Citrus Sinensis ID: 047101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQKSEGPVSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYLESPPSILQFSEDRQQAAAMSSLENMNKNLDFVYDAGGSAGDAWNIVGSSSVNNAGDENFIEGFSCDYHMNNNNNNNNNNIGGDQESSNNYCWNELISVVECRQPNTTPFYTRGC
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccHccccccccccHcccHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mgrspcsdtnglkrgpwtpeeDQKLLDYIKKhghgswrslpekadlqrcgkscrlrwtnylrpdikrgkfslhEEQTIIQLHALLGNRWSAIAahlpkrtdneIKNYWNTHIKKRLArmgidpmthrpkipslasadgdpkkasnlsHMAQWENARLEAEARLVreskpkqndqqksegpvsvsANKQLNRMAttytstrprCLDILKAWESTIcningsiisfgdgsylesppsilqFSEDRQQAAAMSSLENMNKNLDFVydaggsagdawnivgsssvnnagdenfiegFSCDYhmnnnnnnnnnniggdqessnnycWNELISVVecrqpnttpfytrgc
Flexible Loop (DISEMBL)
mgrspcsdtnglkrgpwtpeEDQKLLDYIKKHghgswrslpekadlqrcgkscrlrwTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHlpkrtdneikNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVReskpkqndqqksegpvsvsankqlnrmattytstrprCLDILKAWESTICNINGSIISFGDGSYLESPPSILQFSEDRQQAAAMSSLENMNKNLDFVYDAGGSAGDAWNIVGSSSVNNAGDENFIEGFSCDYHMNNNNNNNNNNIGGDQESSNNYCWNELISVvecrqpnttpfytrgc
Low Complexity Region (SEG)
MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQKSEGPVSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYLESPPSILQFSEDRQQAAAMSSLENMNKNLDFVYDAGGSAGDAWNIVGSSSVNNAGDENFIEGFSCDYHMnnnnnnnnnnIGGDQESSNNYCWNELISVVECRQPNTTPFYTRGC
Disordered region (IsUnstruct)
************************LLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG*************************************************************************TTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYL***************************NLDFVYDAGGSAGDAWNIVGSSSVNNAGDENFIEGFSC*************************************************
Disordered Region (DISOPRED)
*GRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGI******************************************************************************************************************************************DFVYD*************************I************************ESSNNYCWNELISVV*********FYTRGC
Disordered Region (DISEMBL)
***********LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVR*****************VSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYLESPPSILQFS********MSSLENMNKNLDFVYDAGGSAGDAWNIVGSSSVNNAGDENFIEGFSCDYHMNNNNNNNNNNIGGDQESSNNYCWNELISVVECRQPNTTPFYTRGC
Disordered Region (DISPRO)
***SPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRP*I**************************************************************************DILKAWESTIC*****I****D*SYLESPPSILQF****************NKNLDFVYDAGGSAGDAWNIVGSSS*************************************NNYCWNELISVVEC*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQKSEGPVSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYLESPPSILQFSEDRQQAAAMSSLENMNKNLDFVYDAGGSAGDAWNIVGSSSVNNAGDENFIEGFSCDYHMNNNNNNNNNNIGGDQESSNNYCWNELISVVECRQPNTTPFYTRGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q8GWP0	360	Transcription factor MYB3	no	no	0.389	0.372	0.688	8e-53
Q9SPG2	366	Transcription factor MYB2	no	no	0.372	0.349	0.687	4e-52
Q9SPG5	338	Transcription factor MYB7	no	no	0.598	0.609	0.5	1e-51
Q9FLR1	336	Transcription factor MYB2	no	no	0.372	0.380	0.687	2e-51
O49608	274	Transcription factor MYB3	no	no	0.398	0.5	0.656	2e-50
Q9SZP1	282	Transcription repressor M	no	no	0.587	0.716	0.458	3e-49
Q9S9K9	257	Transcription factor MYB3	no	no	0.392	0.525	0.651	8e-49
Q8LPH6	352	Transcription factor MYB8	no	no	0.377	0.369	0.661	1e-48
Q38851	236	Transcription repressor M	no	no	0.369	0.538	0.677	1e-48
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.372	0.435	0.664	1e-48

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  207 bits (528), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 93/135 (68%), Positives = 112/135 (82%), Gaps = 1/135 (0%)

Query: 1   MGRSPCSDTN-GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTN 59
           MGRSPC D + G+K+GPW PEED KL  YI ++G+G+WRSLP+ A L RCGKSCRLRW N
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 60  YLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARM 119
           YLRPDI+RGKFS  EE TI++LHALLGN+WS IA HLP RTDNEIKNYWNTH++K+L +M
Sbjct: 61  YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQM 120

Query: 120 GIDPMTHRPKIPSLA 134
           GIDP+TH P+   L+
Sbjct: 121 GIDPVTHEPRTNDLS 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  205 bits (522), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 102/128 (79%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           M R PC    GLK+G WT EED+KL+ YI  HG G WR +P+KA L+RCGKSCRLRWTNY
Sbjct: 1   MSRKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           L+P+IKRG+FS  EEQ II LHA  GN+WS IA HLP+RTDNEIKNYWNTH+KKRL   G
Sbjct: 61  LKPEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQG 120

Query: 121 IDPMTHRP 128
           IDP+TH+P
Sbjct: 121 IDPVTHKP 128

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG5|MYB76_ARATH Transcription factor MYB76 OS=Arabidopsis thaliana GN=MYB76 PE=1 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/230 (50%), Positives = 144/230 (62%), Gaps = 24/230 (10%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           M + P     GLK+G WT EED+KL+ YI  HG G WR +PEKA L+RCGKSCRLRWTNY
Sbjct: 1   MSKRPYCIGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPEKAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           L+PDIKRG+FS  EEQ II LHA  GN+WS IA HLPKRTDNE+KNYWNTH+KKRL   G
Sbjct: 61  LKPDIKRGEFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEVKNYWNTHLKKRLIDDG 120

Query: 121 IDPMTHRPKIPSLASADGDP---------KKASNLSHMAQWEN---ARLEAEARL-VRES 167
           IDP+TH+P    LAS++ +P         KK++   H +Q  +   A L   + L   +S
Sbjct: 121 IDPVTHKP----LASSNPNPVEPMKFDFQKKSNQDEHSSQSSSTTPASLPLSSNLNSVKS 176

Query: 168 KPKQNDQQKSEGPVSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNI 217
           K    + Q   G   VS  K+  R ++T      R L+ + A  S+I NI
Sbjct: 177 KISSGETQIESG--HVSCKKRFGRSSST-----SRLLNKVAARASSIGNI 219

Plays a role in determining the spatial distribution of aliphatic glucosinolates (GLSs) within the leaf, mostly short chained. Together with MYB28/HAG1 and MYB29/HAG3, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLR1|MYB29_ARATH Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 101/128 (78%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           M R PC    GLK+G WT EED+KL+ YI +HG G WR +P+KA L+RCGKSCRLRW NY
Sbjct: 1   MSRKPCCVGEGLKKGAWTAEEDKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWANY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           L+PDIKRG+FS  EEQ II LHA  GN+WS IA HLPKRTDNEIKNYWNTH+KK L   G
Sbjct: 61  LKPDIKRGEFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEIKNYWNTHLKKLLIDKG 120

Query: 121 IDPMTHRP 128
           IDP+TH+P
Sbjct: 121 IDPVTHKP 128

Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 104/137 (75%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC + +   +G WT EED KL+ YIK HG G WRSLP  A LQRCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPD+KRG F+L E+  II+LH+LLGN+WS IA  LP RTDNEIKNYWNTH+K++L R G
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query: 121 IDPMTHRPKIPSLASAD 137
           IDP THRP   +  S D
Sbjct: 121 IDPATHRPINETKTSQD 137

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/227 (45%), Positives = 137/227 (60%), Gaps = 25/227 (11%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC +     +G WT EED++L+ YIK HG G WRSLP+ A L RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPD+KRG F+  E++ II+LH+LLGN+WS IA  LP RTDNEIKNYWNTHI+++L   G
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query: 121 IDPMTHRPKIPSLASADGDPKK----ASNLSHMAQWENARLEAEARLVRESKPKQND--- 173
           IDP +HRP   S AS D  P +     SN  +++     ++E     +  S P +++   
Sbjct: 121 IDPTSHRPIQESSASQDSKPTQLEPVTSNTINISFTSAPKVETFHESI--SFPGKSEKIS 178

Query: 174 -----QQKSEGPVS-----------VSANKQLNRMATTYTSTRPRCL 204
                ++K E PV            +S    ++R+     ST PRC 
Sbjct: 179 MLTFKEEKDECPVQEKFPDLNLELRISLPDDVDRLQGHGKSTTPRCF 225

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  194 bits (493), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 88/135 (65%), Positives = 104/135 (77%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC +   + +G WT EEDQ L+DYI+KHG G WRSLP  A LQRCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPD+KRG F+  E++ II+LH+LLGN+WS IA  LP RTDNEIKNYWNTHIK++L   G
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query: 121 IDPMTHRPKIPSLAS 135
           IDP +HR    S+ S
Sbjct: 121 IDPNSHRLINESVVS 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 101/130 (77%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGR  C     L++G W+PEED+KLL+YI +HGHG W S+P+ A LQRCGKSCRLRW NY
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPD+KRG FS  EE  II+LHA LGNRWS IA  LP RTDNEIKN+WN+ +KK+L R G
Sbjct: 61  LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query: 121 IDPMTHRPKI 130
           IDP TH+P I
Sbjct: 121 IDPTTHKPLI 130

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/127 (67%), Positives = 100/127 (78%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC +     +G WT EEDQ+L+DYI+ HG G WRSLP+ A L RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPD+KRG F+  E+Q II+LH+LLGN+WS IA  LP RTDNEIKNYWNTHIK++L   G
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query: 121 IDPMTHR 127
           IDP THR
Sbjct: 121 IDPQTHR 127

Arabidopsis thaliana (taxid: 3702)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 103/128 (80%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGR PC D  G+K+GPWT EED+KL+ +I  +G   WR++P+ A L+RCGKSCRLRWTNY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPD+KRG  S  EE+ +I LH+ LGNRWS IAA LP RTDNEIKN+WNTHIKK+L +MG
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG 120

Query: 121 IDPMTHRP 128
           IDP+TH P
Sbjct: 121 IDPVTHEP 128

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
224925916	405	MYB transcription factor ML2 [Thalictrum	0.697	0.592	0.670	2e-89
224098902	381	predicted protein [Populus trichocarpa]	0.956	0.863	0.493	6e-89
224112215	382	predicted protein [Populus trichocarpa]	0.953	0.858	0.487	8e-89
210111348	309	R2R3 MYB transcription factor [Gossypium	0.691	0.770	0.637	3e-88
225452873	393	PREDICTED: uncharacterized protein LOC10	0.764	0.669	0.607	8e-88
224141017	401	predicted protein [Populus trichocarpa]	0.779	0.668	0.621	8e-88
224098912	382	predicted protein [Populus trichocarpa]	0.947	0.853	0.496	1e-87
20563	421	protein 1 [Petunia x hybrida]	0.761	0.622	0.604	2e-87
13346188	309	GHMYB25 [Gossypium hirsutum]	0.691	0.770	0.633	2e-87
254680093	392	mixta-like2 MYB transcription factor [Th	0.828	0.727	0.568	4e-87

>gi|224925916|gb|ACN69972.1| MYB transcription factor ML2 [Thalictrum thalictroides]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/249 (67%), Positives = 194/249 (77%), Gaps = 9/249 (3%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC D  GLK+GPWTPEEDQKLL YI++HGHGSWR+LP KA LQRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKFSL EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL+++G
Sbjct: 61  LRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLSKLG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQN--DQQKSE 178
           IDP+TH+PK  +L+S DG  K  SNLSHMAQWE+ARLEAEARLVRESK + +  + Q   
Sbjct: 121 IDPVTHKPKSDALSSIDGHTKADSNLSHMAQWESARLEAEARLVRESKLRSSSLNSQLGL 180

Query: 179 GPVSVSANKQLNRMATTYTSTRPRCLDILKAWES-----TICNINGSIISFGDGSYLESP 233
               V   +QLN+   T TST+P+CL+++KAW+      T C +     S   G  LESP
Sbjct: 181 SGSGVDPGQQLNK--ATSTSTQPQCLNVMKAWQGIWSKPTKCGLVTGEGSSTGGLDLESP 238

Query: 234 PSILQFSED 242
            S L FS++
Sbjct: 239 TSTLCFSDN 247

Source: Thalictrum thalictroides

Species: Thalictrum thalictroides

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098902|ref|XP_002311313.1| predicted protein [Populus trichocarpa] gi|222851133|gb|EEE88680.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 193/391 (49%), Positives = 238/391 (60%), Gaps = 62/391 (15%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           M +S C +  GLK+GPWTPEEDQKLLDYI++HGHGSWR+LP KA LQRCGKSCRLRWTNY
Sbjct: 1   MVKSQCFEKVGLKKGPWTPEEDQKLLDYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKF+L EEQ+II+LHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL +MG
Sbjct: 61  LRPDIKRGKFNLQEEQSIIRLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQKSEGP 180
           IDP+TH+PK  S  S  G  K A++LSHMAQWE+ARLEAEARLVRESK    +  K+   
Sbjct: 121 IDPVTHKPKADSFGSGSGHSKGAASLSHMAQWESARLEAEARLVRESKLTVPNPPKNVLG 180

Query: 181 VSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYLESPPSILQFS 240
            +VSA  Q++  ++   + RPRCLD+LKAW+  +     S+ S G    LESP S L FS
Sbjct: 181 SAVSA--QVSNKSSATPTERPRCLDVLKAWQGVVF----SMFSVGSSDSLESPTSTLNFS 234

Query: 241 EDRQQAAAMSSLENMNKNLDFV--------------YDAGGS------------------ 268
           E+      +   +N    L F               +D G                    
Sbjct: 235 ENALAIPLIGVQKNPTTTLAFATNNATCNRGTTVSEFDRGNQLECFEKLKDPAQVRRNLD 294

Query: 269 -----------AGD--AWNIVGSSSVNNAGDENFIEGF-------SCDYHMNNNNNNNNN 308
                      AGD  AW  V SS+  NA   N I+GF       S D +   +  N N+
Sbjct: 295 SSMAIHGISPYAGDHNAW-FVDSSANENAPMGNIIDGFSEILVCNSLDPNPTCSGENIND 353

Query: 309 NIGGDQESSNNYCWNELISVVECRQPNTTPF 339
           N  G+ E  +NY WN L+++V+     ++ F
Sbjct: 354 NYAGNLE--DNY-WNSLLNLVDASPTGSSVF 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112215|ref|XP_002316122.1| predicted protein [Populus trichocarpa] gi|222865162|gb|EEF02293.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 192/394 (48%), Positives = 238/394 (60%), Gaps = 66/394 (16%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           M RS C D  GLK+GPWTPEEDQKLL Y+++HGHGSWR+LP KA LQRCGKSCRLRWTNY
Sbjct: 1   MVRSQCCDKVGLKKGPWTPEEDQKLLAYVEEHGHGSWRALPAKAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKFSL EEQTIIQLHALLGNRWS IA HLPKRTDNEIKNYWNTH+KKRL +MG
Sbjct: 61  LRPDIKRGKFSLQEEQTIIQLHALLGNRWSVIATHLPKRTDNEIKNYWNTHLKKRLDKMG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESK-----PKQNDQQ 175
           IDPMTH+PK  S  S  G  K A++LSHMAQWE+ARLEAEARLVRESK     P  N   
Sbjct: 121 IDPMTHKPKADSFGSGSGHSKGAAHLSHMAQWESARLEAEARLVRESKVIIPNPPPNR-- 178

Query: 176 KSEGPVSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYLESPPS 235
                +  +A+ Q++   +     RP+CLD+LKAW+  +     S++S G    LESP S
Sbjct: 179 -----LGSTASAQVSDKRSAAPPARPQCLDVLKAWQGVVF----SMLSAGCSDSLESPTS 229

Query: 236 ILQFSEDRQQAAAMSSLENMNKNLDFVYD----AGGSAGDAWNI---------------- 275
            L FSE+      +   +N    L F  +     GG+    +N                 
Sbjct: 230 TLNFSENELAMPLVGVQKNSATTLAFATNNAPCNGGTTAIEFNSGNQFECFEKLNEAAQV 289

Query: 276 ---VGSSSV---------------NNAGDEN----FIEGFS----C---DYHMNNNNNNN 306
              V SS                 ++A +EN     IEG S    C   D++ + +  N 
Sbjct: 290 KQNVDSSVALHDISPDASNHNAWFDSATNENAPMGIIEGLSEILVCTSQDHNASFDGENI 349

Query: 307 NNNIGGDQESSNNYCWNELISVVECRQPNTTPFY 340
           N++ GG+ E + NY WN L+++V+     T+P +
Sbjct: 350 NDSCGGNLEENGNY-WNSLLNLVDASPTGTSPVF 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|210111348|gb|ACJ07153.1| R2R3 MYB transcription factor [Gossypium hirsutum]

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 167/262 (63%), Positives = 194/262 (74%), Gaps = 24/262 (9%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC +  GLK+GPWTPEEDQKLL YI++HGHGSWR+LP KA LQRCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKVGLKKGPWTPEEDQKLLAYIEQHGHGSWRALPLKAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKFSL EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL +MG
Sbjct: 61  LRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESK-----PKQNDQQ 175
           IDP+TH+PK  +L S  G+PK A+NLSHMAQWE+ARLEAEARLVRESK     P Q++  
Sbjct: 121 IDPVTHKPKTDALGSTTGNPKDAANLSHMAQWESARLEAEARLVRESKLVPSNPPQSNHF 180

Query: 176 KSEGPVSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFG-DGSYLESPP 234
            +  P    A             TRP+CLD+LKAW+  +C     + +F  D + L+SP 
Sbjct: 181 TAVAPSPTPA-------------TRPQCLDVLKAWQGVVC----GLFTFNMDNNNLQSPT 223

Query: 235 SILQFSEDRQQAAAMSSLENMN 256
           S L F E+      MSS  ++N
Sbjct: 224 STLNFMEN-TTTLPMSSSSSVN 244

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452873|ref|XP_002283843.1| PREDICTED: uncharacterized protein LOC100245564 [Vitis vinifera]

 Score =  330 bits (845), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 172/283 (60%), Positives = 197/283 (69%), Gaps = 20/283 (7%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC D  GLK+GPWTPEEDQKLL YI++HGHGSWR+LP KA LQRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKFSL EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRLA+MG
Sbjct: 61  LRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQKSEGP 180
           IDP+TH+PK  +L S+DG  K A+NLSHMAQWE+ARLEAEARLVRESK + N      G 
Sbjct: 121 IDPVTHKPKSDALLSSDGQSKNAANLSHMAQWESARLEAEARLVRESKLRSNSFNHHPGT 180

Query: 181 VSVSANKQLNRMATTYTSTRPRCLDILKAWEST-------------ICNINGSIISFGDG 227
            S S +  +       +S+ P  LD+LKAW                     G        
Sbjct: 181 PSASTSAAVGGKTAAVSSSPPLYLDVLKAWHGVWPKSTEGGGSSGGGGGGGGGGGGVAVA 240

Query: 228 SYLESPPSILQFSEDRQQAAAMSSLENMNKNLDFVYDAGGSAG 270
             LESP S L +SE+   AAA++S       +DFV ++G   G
Sbjct: 241 GDLESPTSTLSYSEN---AAAVAS----TAVIDFVGNSGSCEG 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141017|ref|XP_002323871.1| predicted protein [Populus trichocarpa] gi|222866873|gb|EEF04004.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 171/275 (62%), Positives = 196/275 (71%), Gaps = 7/275 (2%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC D  GLK+GPWTPEEDQKLL YI++HGHGSWR+LP KA LQRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKFSL EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRLA+MG
Sbjct: 61  LRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQND---QQKS 177
           IDP+TH+ K  +L S DG  K A+NLSHMAQWE+ARLEAEARLVRESK +      Q  S
Sbjct: 121 IDPVTHKSKNDALLSIDGQSKNAANLSHMAQWESARLEAEARLVRESKLRSQSIQHQLSS 180

Query: 178 EGPVSVSANKQLNRMATTYTSTRPRCLDILKAWE---STICNINGSIISFGDGSYLESPP 234
             P     +       ++  +  PR LD LKAW    S     NG  ++ G G  LESP 
Sbjct: 181 TTPGYFPGSGSSPGSTSSTLAQPPRSLDALKAWNDGWSKSSEGNGGGLNMGIGDVLESPT 240

Query: 235 SILQFSEDRQQAAAMSSL-ENMNKNLDFVYDAGGS 268
           S L FSE+        ++ EN    ++FV  +G +
Sbjct: 241 STLTFSENAPPVMNSGAVGENSISMIEFVGTSGST 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098912|ref|XP_002311317.1| predicted protein [Populus trichocarpa] gi|222851137|gb|EEE88684.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 196/395 (49%), Positives = 241/395 (61%), Gaps = 69/395 (17%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           M +S C +  GLK+GPWTPEEDQKLL YI++HGHGSWR+LP KA L+RCGKSCRLRWTNY
Sbjct: 1   MVKSQCFEKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLRRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKF+L EEQ+IIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL +MG
Sbjct: 61  LRPDIKRGKFNLQEEQSIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQKSEGP 180
           IDP+TH+PK  S  S  G  K A++LSHMAQWE+ARLEAEARLVRESK    +  K+   
Sbjct: 121 IDPVTHKPKADSFGSGSGHSKGAASLSHMAQWESARLEAEARLVRESKLTVPNPPKNVLG 180

Query: 181 VSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYLESPPSILQFS 240
            +VSA  Q++  ++   + RP+CLD+LKAW+  +     S+ S G    LESP S L FS
Sbjct: 181 SAVSA--QVSNKSSATPTARPQCLDVLKAWQGVVF----SMFSVGSSDSLESPTSTLNFS 234

Query: 241 EDRQQAAAMSSLENMNKN----LDFV--------------YDAGGS-------------- 268
           E+   A AM  L  + KN    L F               +D G                
Sbjct: 235 EN---ALAMIPLIGVQKNPTTTLAFATNNATCNRGATASEFDRGNQLECFEKLKDPAQVR 291

Query: 269 ---------------AGD--AWNIVGSSSVNNAGDENFIEGF-------SCDYHMNNNNN 304
                          AGD  AW  V SS+  NA   N I+GF       S D +   +  
Sbjct: 292 RNLDSSMAIHGISPYAGDHNAW-FVDSSANENAPMGNIIDGFSEILVCNSLDPNPTCSGE 350

Query: 305 NNNNNIGGDQESSNNYCWNELISVVECRQPNTTPF 339
           N N+N  G+ E  +NY WN L+++V+     ++ F
Sbjct: 351 NINDNYAGNLE--DNY-WNSLLNLVDASPTGSSVF 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20563|emb|CAA78386.1| protein 1 [Petunia x hybrida]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/281 (60%), Positives = 197/281 (70%), Gaps = 19/281 (6%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC D  GLK+GPWTPEEDQKLL YI++HGHGSWR+LP KA LQRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKF+L EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL +MG
Sbjct: 61  LRPDIKRGKFTLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQ----K 176
           IDP+TH+PK  +L S DG  K A+NLSHMAQWE+ARLEAEARLVR+SK + N  Q     
Sbjct: 121 IDPVTHKPKNDALLSHDGQSKNAANLSHMAQWESARLEAEARLVRQSKLRSNSFQNPLAS 180

Query: 177 SEGPVSVSANKQLNRMATTYTST--RPRCLDILKAWEST-------ICNINGSIISFGD- 226
            E   S + +  L++   T T     PRCLD+LKAW          + + +GS  +    
Sbjct: 181 HELFTSPTPSSPLHKPIVTPTKAPGSPRCLDVLKAWNGVWTKPMNDVLHADGSTSASATV 240

Query: 227 -----GSYLESPPSILQFSEDRQQAAAMSSLENMNKNLDFV 262
                G  LESP S L + E+ Q  +     EN     +FV
Sbjct: 241 SVNALGLDLESPTSTLSYFENAQHISTGMIQENSTSLFEFV 281

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13346188|gb|AAK19616.1|AF336283_1 GHMYB25 [Gossypium hirsutum]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/262 (63%), Positives = 193/262 (73%), Gaps = 24/262 (9%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGRSPC +  GLK+GPWTPEEDQKLL YI++HGHGSWR+LP KA LQRCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKVGLKKGPWTPEEDQKLLAYIEQHGHGSWRALPLKAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPDIKRGKFSL EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL +MG
Sbjct: 61  LRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESK-----PKQNDQQ 175
           IDP+TH+PK  +L S  G+P  A+NLSHMAQWE+ARLEAEARLVRESK     P Q++  
Sbjct: 121 IDPVTHKPKTDALGSTTGNPIDAANLSHMAQWESARLEAEARLVRESKLVPSNPPQSNHF 180

Query: 176 KSEGPVSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFG-DGSYLESPP 234
            +  P    A             TRP+CLD+LKAW+  +C     + +F  D + L+SP 
Sbjct: 181 TAVAPSPTPA-------------TRPQCLDVLKAWQGVVC----GLFTFNMDNNNLQSPT 223

Query: 235 SILQFSEDRQQAAAMSSLENMN 256
           S L F E+      MSS  ++N
Sbjct: 224 STLNFMEN-TTTLPMSSSSSVN 244

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254680093|gb|ACT78693.1| mixta-like2 MYB transcription factor [Thalictrum dioicum]

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/299 (56%), Positives = 209/299 (69%), Gaps = 14/299 (4%)

Query: 11  GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKF 70
           GLK+GPWTPEEDQKLL YI++HGHGSWR+LP KA LQRCGKSCRLRWTNYLRPDIKRGKF
Sbjct: 3   GLKKGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKF 62

Query: 71  SLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKI 130
           SL EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL+++GIDP+TH+PK 
Sbjct: 63  SLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLSKLGIDPVTHKPKS 122

Query: 131 PSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQKSEGPVS--VSANKQ 188
            +L+S +G  K  SNLSHMAQWE+ARLEAEARLVRESK +        G  S  V   +Q
Sbjct: 123 DALSSINGQTKADSNLSHMAQWESARLEAEARLVRESKLRSTSMNNQLGLSSSGVDPGQQ 182

Query: 189 LNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSY----LESPPSILQFSEDRQ 244
           LN+   T TST+P+CLD++K W+          +  G+GS     LESP S L FS++  
Sbjct: 183 LNK--ATSTSTQPQCLDVMKTWQGIWSKPTKCGLLTGEGSTGGLDLESPTSTLCFSDNSM 240

Query: 245 QAAAMSSLENMNKNLDFVYDAGGSAGDAWNIVGSSSVNNAGDENFIEGFSCDYHMNNNN 303
               +   +N   +LD + ++ G++       G  +V    DE ++ G      +N+ N
Sbjct: 241 PVLTVGFSDNPMPSLDLIPNSSGTS------EGVPAVKEECDEEYMGGGEYKRMVNSVN 293

Source: Thalictrum dioicum

Species: Thalictrum dioicum

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.566	0.502	0.719	8.5e-77
TAIR|locus:2150891	326	MYB16 "myb domain protein 16"	0.837	0.883	0.532	2.8e-73
TAIR|locus:2098906	299	MYB17 "myb domain protein 17"	0.479	0.551	0.688	5.5e-61
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.462	0.495	0.660	1.1e-60
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.462	0.473	0.648	3.3e-59
TAIR|locus:2023951	365	MYB93 "myb domain protein 93"	0.392	0.369	0.770	4.5e-59
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.386	0.38	0.751	8.8e-59
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.430	0.456	0.697	5.9e-57
TAIR|locus:2132957	282	MYB41 "myb domain protein 41"	0.718	0.875	0.482	9.6e-57
TAIR|locus:2171845	310	MYB53 "myb domain protein 53"	0.534	0.593	0.573	3.7e-55

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 141/196 (71%), Positives = 159/196 (81%)

Query:     4 SPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRP 63
             SPC D  GLK+GPWTPEEDQKLL YI++HGHGSWRSLPEKA LQRCGKSCRLRWTNYLRP
Sbjct:    47 SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRP 106

Query:    64 DIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDP 123
             DIKRGKF++ EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL +MGIDP
Sbjct:   107 DIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDP 166

Query:   124 MTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESKPKQNDQQKSEGPVSV 183
             +TH+ K  +L+S+ G  K A+ LSHMAQWE+ARLEAEARL RESK       ++   ++ 
Sbjct:   167 VTHKHKNETLSSSTGQSKNAATLSHMAQWESARLEAEARLARESKLLHLQHYQNNNNLNK 226

Query:   184 SANKQLNRMATTYTST 199
             SA  Q     T  TST
Sbjct:   227 SAAPQ-QHCFTQKTST 241

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 166/312 (53%), Positives = 202/312 (64%)

Query:     1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
             MGRSPC D  GLK+GPWTPEEDQKLL YI++HGHGSWRSLPEKA L RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
             LRPDIKRGKF+L EEQTIIQLHALLGNRWSAIA HLPKRTDNEIKNYWNTH+KKRL +MG
Sbjct:    61 LRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMG 120

Query:   121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRESK--PKQNDQQKSE 178
             IDP+TH+PK  +  S+ G  K A+ LSH AQWE+ARLEAEARL RESK    Q+ Q K+ 
Sbjct:   121 IDPVTHKPKNETPLSSLGLSKNAAILSHTAQWESARLEAEARLARESKLLHLQHYQTKTS 180

Query:   179 GPVSVSANKQLNRMATTYTSTRPRCLDILKAWESTICNINGSIISFGDGSYLESPPSILQ 238
                          +   +T T+P   +  +  ES       S +SF +    ES P+ ++
Sbjct:   181 SQPHHHHGFTHKSLLPNWT-TKPH--EDQQQLESPT-----STVSFSEMK--ESIPAKIE 230

Query:   239 FSEDRQQAAAMSSLEN--MNKNL-DFVYDAGGSA---GDAWNIVGSSSVNNA--GDENFI 290
             F         M   E+  +N  + +F     G     G    ++G  S++ +  GD+N  
Sbjct:   231 FVGSSTGVTLMKEPEHDWINSTMHEFETTQMGEGIEEGFTGLLLGGDSIDRSFSGDKNET 290

Query:   291 EGFS----CDYH 298
              G S    C+Y+
Sbjct:   291 AGESSGGDCNYY 302

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 115/167 (68%), Positives = 134/167 (80%)

Query:     1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
             MGR+PC D  GLK+GPWTPEED+ L+ +IKK+GHGSWR+LP+ A L RCGKSCRLRWTNY
Sbjct:     1 MGRTPCCDKIGLKKGPWTPEEDEVLVAHIKKNGHGSWRTLPKLAGLLRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
             LRPDIKRG F+  EE+ +IQLHA+LGNRW+AIAA LP RTDNEIKN WNTH+KKRL  MG
Sbjct:    61 LRPDIKRGPFTADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKRLLSMG 120

Query:   121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVRES 167
             +DP TH P +PS   A   P   +   HMAQWE+AR+EAEARL RES
Sbjct:   121 LDPRTHEP-LPSYGLAKQAPSSPTT-RHMAQWESARVEAEARLSRES 165

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048443 "stamen development" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 107/162 (66%), Positives = 133/162 (82%)

Query:     1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
             MGRSPC D +GLK+GPWTPEEDQKL+++I+KHGHGSWR+LP++A L RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
             LRPDIKRG F+  EEQTII LH+LLGN+WS+IA HLP RTDNEIKNYWNTHI+K+L +MG
Sbjct:    61 LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMG 120

Query:   121 IDPMTHRPKIPSLASADGDPK--KASNLSHMAQW-ENARLEA 159
             IDP+THRP+   L      P+   A+N +++    +N +L+A
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLLAAANFNNLLNLNQNIQLDA 162

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 105/162 (64%), Positives = 130/162 (80%)

Query:     1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
             MGRSPC D NGLK+GPWT EED KL+D+I+KHGHGSWR+LP++A L RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
             LRPDIKRG F+  EEQTII LH+LLGN+WS+IA +LP RTDNEIKNYWNTH++K+L +MG
Sbjct:    61 LRPDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMG 120

Query:   121 IDPMTHRPKIPSLASADGDPK--KASNLSHMAQW-ENARLEA 159
             IDP+THRP+   L      P+   A+N + +    +N +L+A
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLIAAANFNSLLNLNQNVQLDA 162

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2023951 MYB93 "myb domain protein 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 104/135 (77%), Positives = 119/135 (88%)

Query:     1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
             MGRSPC D NGLK+GPWTPEEDQKL+DYI KHGHGSWR+LP+ ADL RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
             LRPDIKRGKFS  EEQTI+ LH++LGN+WSAIA HL  RTDNEIKN+WNTH+KK+L +MG
Sbjct:    61 LRPDIKRGKFSAEEEQTILHLHSILGNKWSAIATHLQGRTDNEIKNFWNTHLKKKLIQMG 120

Query:   121 IDPMTHRPKIPSLAS 135
             IDP+TH+P+    AS
Sbjct:   121 IDPVTHQPRTDLFAS 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 100/133 (75%), Positives = 118/133 (88%)

Query:     1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
             M RSPC + NGLK+GPWT EEDQKL+DYI+KHG+G+WR+LP+ A LQRCGKSCRLRWTNY
Sbjct:     1 MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
             LRPDIKRG+FS  EE+TIIQLH+ LGN+WSAIAA LP RTDNEIKN+WNTHI+K+L RMG
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMG 120

Query:   121 IDPMTHRPKIPSL 133
             IDP+TH P++  L
Sbjct:   121 IDPVTHSPRLDLL 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 104/149 (69%), Positives = 123/149 (82%)

Query:     1 MGRSPCSDT-NGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTN 59
             MGRSPC +  NGLK+GPWTPEEDQKL+DYI  HG+G+WR+LP+ A LQRCGKSCRLRWTN
Sbjct:     1 MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

Query:    60 YLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARM 119
             YLRPDIKRG+FS  EE+TIIQLH+++GN+WSAIAA LP RTDNEIKNYWNTHI+KRL +M
Sbjct:    61 YLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLKM 120

Query:   120 GIDPMTHRPKIPSLASADGDPKKASNLSH 148
             GIDP+TH P++  L  +        N SH
Sbjct:   121 GIDPVTHTPRLDLLDISSILSSSIYNSSH 149

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2132957 MYB41 "myb domain protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 123/255 (48%), Positives = 159/255 (62%)

Query:     1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
             MGRSPC D NG+K+GPWT EEDQKL+DYI+ HG G+WR+LP+ A L RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
             LRPDIKRG+FS  EE+TIIQLH+++GN+WSAIAA LP RTDNEIKN+WNTHI+KRL R G
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKRLVRSG 120

Query:   121 IDPMTHRPKIP--SLASADGDPKKASNLSHMAQWENARLEAEA-RLVRESKPKQNDQQKS 177
             IDP+TH P++    L+S         N S +A   ++ L  +  RL     P QN     
Sbjct:   121 IDPVTHSPRLDLLDLSSLLSALFNQPNFSAVATHASSLLNPDVLRLASLLLPLQNPNPVY 180

Query:   178 EGPVSVSANKQLNRMATTYTSTRPRCLDILKAWE-STICNINGSIISFGDGSYLESPPSI 236
               P ++  N Q    ++  +  +     +   +E S++  +N  +   G    L  PP  
Sbjct:   181 --PSNLDQNLQTPNTSSESSQPQAETSTVPTNYETSSLEPMNARLDDVGLADVL--PPLS 236

Query:   237 LQFSEDRQQAAAMSS 251
               F  D   +  MSS
Sbjct:   237 ESFDLDSLMSTPMSS 251

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0016049 "cell growth" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080090 "regulation of primary metabolic process" evidence=IMP

GO:0080091 "regulation of raffinose metabolic process" evidence=IMP

TAIR|locus:2171845 MYB53 "myb domain protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 109/190 (57%), Positives = 134/190 (70%)

Query:     1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
             MGRSP SD  GLK+GPW PEED KL++YI KHGH SW +LP+ A L RCGKSCRLRWTNY
Sbjct:     1 MGRSPSSDETGLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
             LRPDIKRGKFS  EE+TI+ LHA+LGN+WS IA+HLP RTDNEIKN+WNTH+KK+L +MG
Sbjct:    61 LRPDIKRGKFSAEEEETILNLHAVLGNKWSMIASHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query:   121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENA-RLEAEA--RLVRESKPKQNDQ--- 174
              DPMTH+P+   + S+       SNL  +   +    +E +A   L  E    Q  Q   
Sbjct:   121 FDPMTHQPRTDDIFSSLSQLMSLSNLRGLVDLQQQFPMEDQALLNLQTEMAKLQLFQYLL 180

Query:   175 QKSEGPVSVS 184
             Q S  P+S++
Sbjct:   181 QPSPAPMSIN 190

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	4e-61
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-56
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-15
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-10
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	2e-04
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-04

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  202 bits (514), Expect = 4e-61
 Identities = 96/201 (47%), Positives = 128/201 (63%), Gaps = 7/201 (3%)

Query: 1   MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
           MGR  C     L++G W+PEED+KLL +I K+GHG W S+P++A LQRCGKSCRLRW NY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMG 120
           LRPD+KRG FS  EE  II+LHA+LGNRWS IAA LP RTDNEIKN WN+ +KK+L + G
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 121 IDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAEARLVR--ESKPKQNDQQKSE 178
           IDP TH+P    L+  +    K       +   ++ +  E  L++   SKP    Q+K  
Sbjct: 121 IDPNTHKP----LSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLAALQEKRS 176

Query: 179 GPVSVSANKQLNRMATTYTST 199
             +S +   QL   +++ +  
Sbjct: 177 SSISPAGY-QLEVESSSSSKI 196

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  182 bits (464), Expect = 3e-56
 Identities = 81/125 (64%), Positives = 97/125 (77%)

Query: 4   SPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRP 63
           +PC    G+KRGPWT EED+ L+ +IKK G G WRSLP++A L RCGKSCRLRW NYLRP
Sbjct: 15  TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRP 74

Query: 64  DIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDP 123
            +KRG  +  EE  I++LH LLGNRWS IA  +P RTDNEIKNYWNTH++K+L R GIDP
Sbjct: 75  SVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDP 134

Query: 124 MTHRP 128
            TH+P
Sbjct: 135 QTHKP 139

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.9 bits (167), Expect = 5e-15
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61
          RGPWTPEED+ L++ +KKHG+G+W  + +     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 12  LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
            K G W   ED+ L   +KK G  +W  +     +   GK    RW N+L P +K+  +S
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKV-ASLLISSTGKQSSNRWNNHLNPQLKKKNWS 76

Query: 72  LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDP 123
             E++ +I L   LG +WS IA +  +RT  +    +   ++   +      
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKL 128

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 67  RGKFSLHEEQTIIQLHALLGNR-WSAIAAHLPKRTDNEIKNYWNTHI 112
           RG ++  E++ +I+     GN  WS IA HLP RTDN+ KN WN ++
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRP 63
          +G WT EED+ L++ +KK+G  +W  + ++    R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 67  RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKK 114
           +G+++  E++ +I+L    G N W  IA  LP RT  + +  W   +K 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 56.9 bits (138), Expect = 7e-11
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 17 WTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQ 76
          WT EED+KLL  ++K+G   W+ + E+  L R   +CR RW   LRP   RG ++  E+Q
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 16 PWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61
          PWT EED+ LL+ +KK+G  +W  + ++    R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 69  KFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI 112
            ++  E++ +++     G N W  IA  LP RT  + +  W   +
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 16 PWTPEEDQKLLDYIKKHGHGSWR 38
           WT EED+ L++ ++K+G G+W 
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWA 24

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 74  EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLAR 118
           E++ +++L    GN W  IA  L  RT +  ++ W   ++ + +R
Sbjct: 5   EDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.79
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.76
PLN03212	249	Transcription repressor MYB5; Provisional	99.62
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.6
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.55
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.55
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.49
PLN03091	459	hypothetical protein; Provisional	99.49
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.41
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.36
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.32
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.17
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.05
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.95
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.82
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.79
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.22
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.21
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.63
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.5
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.32
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.28
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.16
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.99
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.81
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.58
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.57
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.53
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.41
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.23
PRK13923	170	putative spore coat protein regulator protein YlbO	95.89
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.68
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.66
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.5
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.01
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	94.78
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.01
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.48
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	93.29
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.55
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.22
PRK13923	170	putative spore coat protein regulator protein YlbO	91.14
KOG2656	445	consensus DNA methyltransferase 1-associated prote	90.36
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	90.0
KOG1194	534	consensus Predicted DNA-binding protein, contains	89.99
KOG4282	345	consensus Transcription factor GT-2 and related pr	89.95
KOG4167	907	consensus Predicted DNA-binding protein, contains	88.07
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	82.8

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=5.8e-40  Score=325.71  Aligned_cols=170  Identities=52%  Similarity=0.921  Sum_probs=155.0

Q ss_pred             CCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHH
Q 047101            1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQ   80 (344)
Q Consensus         1 mgR~pc~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~   80 (344)
                      |||++||+|.+++||+||+|||++|+++|++||.++|..||+.++++|+++|||+||.+||+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCcccccccchhhhhhhHHHHH
Q 047101           81 LHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASNLSHMAQWENARLEAE  160 (344)
Q Consensus        81 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~~s~l~h~~qwesarlEae  160 (344)
                      +|++||++|.+||++|||||+++||+||+.+|+++++..++++.+++++.+.....+    ..+....+.+++++++++|
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~~d----~~p~~~~~~~~~s~~~~~e  156 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGED----KNPPTDDKSDKASSVVSNE  156 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccccc----cCCccccccccchhhhhhh
Confidence            999999999999999999999999999999999999999999999999976543322    2245567888999999999


Q ss_pred             HhhhhhcCCCCCCC
Q 047101          161 ARLVRESKPKQNDQ  174 (344)
Q Consensus       161 arl~r~~~~~~~~~  174 (344)
                      ..|.....++....
T Consensus       157 l~~~~~~~~~~~~~  170 (459)
T PLN03091        157 LNLLKADNSKPLAA  170 (459)
T ss_pred             hhhhhhhccCcccc
Confidence            98887776655443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=6e-38  Score=292.73  Aligned_cols=129  Identities=63%  Similarity=1.191  Sum_probs=124.8

Q ss_pred             CCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHH
Q 047101            2 GRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQL   81 (344)
Q Consensus         2 gR~pc~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~l   81 (344)
                      .|+|||+|++++|++||+|||++|+++|++||..+|..||+.++++|+++|||+||.+||+|.+++++||.|||++|+++
T Consensus        13 ~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel   92 (249)
T PLN03212         13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL   92 (249)
T ss_pred             CCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHH
Confidence            37899999999999999999999999999999999999999997799999999999999999999999999999999999


Q ss_pred             HHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 047101           82 HALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKI  130 (344)
Q Consensus        82 v~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~  130 (344)
                      |.+||++|..||++|||||+++||+||+.+|++++.+.++++.+++++.
T Consensus        93 ~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~  141 (249)
T PLN03212         93 HRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD  141 (249)
T ss_pred             HHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999988764

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=3.1e-36  Score=282.11  Aligned_cols=118  Identities=66%  Similarity=1.136  Sum_probs=111.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 047101           11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWS   90 (344)
Q Consensus        11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs   90 (344)
                      .+.||+||+|||++|++||++||.++|..||+.++++||+|+||+||.|||+|++++|.||+|||.+|++||+.+|++|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 047101           91 AIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRP  128 (344)
Q Consensus        91 ~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp  128 (344)
                      .||++|||||+++|||+|+++|++|+.+.+.++.+..+
T Consensus        86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~~  123 (238)
T KOG0048|consen   86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHRP  123 (238)
T ss_pred             HHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence            99999999999999999999999999998865555443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.79  E-value=5.6e-20  Score=189.03  Aligned_cols=140  Identities=16%  Similarity=0.331  Sum_probs=127.2

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccc--------------------------------
Q 047101            7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCR--------------------------------   54 (344)
Q Consensus         7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr--------------------------------   54 (344)
                      ...|.++|..|++|||++|+.+...+++.+|..||..++..|+..||.                                
T Consensus       246 ~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~  325 (939)
T KOG0049|consen  246 ELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSI  325 (939)
T ss_pred             hcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhc
Confidence            467889999999999999999999998888888888888778888886                                


Q ss_pred             ----------------------cccccccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHH
Q 047101           55 ----------------------LRWTNYLRPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTH  111 (344)
Q Consensus        55 ----------------------~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~  111 (344)
                                            .||...|+|.+++|+||.+||.+|+++|.+|| ..|.+|-..+|||++.|||.||.+.
T Consensus       326 nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv  405 (939)
T KOG0049|consen  326 NSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV  405 (939)
T ss_pred             cCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence                                  68999999999999999999999999999999 5599999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCcccccCC-CCCcccccc
Q 047101          112 IKKRLARMGIDPMTHRPKIPSLASAD-GDPKKASNL  146 (344)
Q Consensus       112 Lkk~l~k~~~~p~e~kp~~~~~~~~~-~~~k~~s~l  146 (344)
                      |..+.+++.|+-.++..+..++..+| ++|.+++.+
T Consensus       406 L~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~  441 (939)
T KOG0049|consen  406 LNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAML  441 (939)
T ss_pred             HHHhhccCceeecchHHHHHHHHHHccchHHHHHHH
Confidence            99999999999999999999998876 578887665

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.76  E-value=4e-19  Score=182.77  Aligned_cols=111  Identities=25%  Similarity=0.479  Sum_probs=102.5

Q ss_pred             CCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHH
Q 047101            1 MGRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQ   80 (344)
Q Consensus         1 mgR~pc~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~   80 (344)
                      +||......|++++|+||++||.+|+.+|.+||.++|.+|-+.++ +|+..|||+||.|.|....|.+.||..||+.||.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            478888899999999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             HHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           81 LHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        81 lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      +|++|| ++|.+||..||+||..|...|=...+
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~  458 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLI  458 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHHHHHHH
Confidence            999999 89999999999999966654443333

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.62  E-value=2.5e-16  Score=147.91  Aligned_cols=98  Identities=13%  Similarity=0.238  Sum_probs=88.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCC
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHL-PKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGD  139 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~L-pgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~  139 (344)
                      ++.+++++||+|||++|+++|++|| .+|..||+.+ ++||++|||.||.++|++.+++.+|+++|++.+...+...|.+
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999 6899999998 6999999999999999999999999999999999999999999


Q ss_pred             Cccccccc-------chhhhhhhHHHH
Q 047101          140 PKKASNLS-------HMAQWENARLEA  159 (344)
Q Consensus       140 ~k~~s~l~-------h~~qwesarlEa  159 (344)
                      |..|+...       .+.+|.+.....
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            99998753       557888765443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.60  E-value=3.8e-16  Score=116.22  Aligned_cols=60  Identities=45%  Similarity=0.910  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHH
Q 047101           17 WTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTI   78 (344)
Q Consensus        17 WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~L   78 (344)
                      ||+|||++|+++|.+||. +|..||..|+ .|++.||+.||.++|+|.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999996 9999999997 89999999999999999999999999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=4.2e-15  Score=150.44  Aligned_cols=108  Identities=24%  Similarity=0.529  Sum_probs=102.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhH
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSA   91 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~   91 (344)
                      ++.|-|+.-||+.|..+|.+||.+.|++|++.+. ..+++||+.||..+|+|.+++..|+.+||++|+.+...+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5679999999999999999999999999999998 889999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 047101           92 IAAHLPKRTDNEIKNYWNTHIKKRLARMGI  121 (344)
Q Consensus        92 IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~  121 (344)
                      |+..| ||+.+||-.||+++|........-
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence            99999 999999999999999877766443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.55  E-value=6.1e-15  Score=151.16  Aligned_cols=107  Identities=28%  Similarity=0.520  Sum_probs=102.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCh
Q 047101           10 NGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRW   89 (344)
Q Consensus        10 ~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kW   89 (344)
                      ..++.|.|+..||+.|+.+|+++|..+|..||..+. .|+++||+.||.++++|.+++..|+.+||..|+.+..++|.+|
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            357789999999999999999999999999999999 5999999999999999999999999999999999999999999


Q ss_pred             hHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 047101           90 SAIAAHLPKRTDNEIKNYWNTHIKKRLA  117 (344)
Q Consensus        90 s~IA~~LpgRT~~qcKnRW~~~Lkk~l~  117 (344)
                      ..||..+++||..+|.+||...+.....
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999999987776

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.49  E-value=2.4e-15  Score=141.18  Aligned_cols=92  Identities=15%  Similarity=0.225  Sum_probs=84.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC-CCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCC
Q 047101           63 PDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP-KRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDP  140 (344)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp-gRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~  140 (344)
                      |.+.+|+||+|||++|+++|++|| ++|..|++.++ +|++++||-||.++|++.++++.|+++|++.+..+....|++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            445689999999999999999999 66999999999 9999999999999999999999999999999999999999999


Q ss_pred             cccccc-------cchhhhhh
Q 047101          141 KKASNL-------SHMAQWEN  154 (344)
Q Consensus       141 k~~s~l-------~h~~qwes  154 (344)
                      ..||..       ..+.+|.+
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt  105 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNT  105 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHH
Confidence            999876       44568844

>PLN03091 hypothetical protein; Provisional

Probab=99.49  E-value=5.9e-15  Score=147.84  Aligned_cols=96  Identities=14%  Similarity=0.265  Sum_probs=86.3

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCC
Q 047101           60 YLRPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHL-PKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASAD  137 (344)
Q Consensus        60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~L-pgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~  137 (344)
                      ..++.+++++||+|||++|+++|++|| .+|..||+.+ ++|+++|||.||+++|++.+++.+|+++|++.++..+...|
T Consensus         7 c~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~G   86 (459)
T PLN03091          7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLG   86 (459)
T ss_pred             CcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhC
Confidence            334678999999999999999999999 5799999988 49999999999999999999999999999999999999999


Q ss_pred             CCCcccccc-------cchhhhhhh
Q 047101          138 GDPKKASNL-------SHMAQWENA  155 (344)
Q Consensus       138 ~~~k~~s~l-------~h~~qwesa  155 (344)
                      .+|..|+..       ..+.+|...
T Consensus        87 nKWskIAk~LPGRTDnqIKNRWnsl  111 (459)
T PLN03091         87 NRWSQIAAQLPGRTDNEIKNLWNSC  111 (459)
T ss_pred             cchHHHHHhcCCCCHHHHHHHHHHH
Confidence            999999875       345677764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.41  E-value=1.4e-13  Score=142.66  Aligned_cols=103  Identities=26%  Similarity=0.594  Sum_probs=93.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCC--CCCCCCCHHHHHHHHHHHH-------
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD--IKRGKFSLHEEQTIIQLHA-------   83 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~--ikrg~WT~EED~~Ll~lv~-------   83 (344)
                      ++|.||+||++.|..++.+||. .|.+|+..++  |.+..|++||++|..+.  .+++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            7999999999999999999996 9999999998  99999999999999987  4899999999999999995       


Q ss_pred             Hh-------------------CCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 047101           84 LL-------------------GNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLAR  118 (344)
Q Consensus        84 ~~-------------------G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k  118 (344)
                      ++                   +..|+.|++.+..|+..||+.+|+.++......
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n  513 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN  513 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence            23                   235999999999999999999999999776554

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.36  E-value=1.9e-13  Score=101.66  Aligned_cols=57  Identities=26%  Similarity=0.569  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047101           70 FSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTH  126 (344)
Q Consensus        70 WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~  126 (344)
                      ||.|||++|+++|.+||++|..||++|+.||..+|++||+.+|++.+.+.+|+++++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd   57 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEED   57 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHH
Confidence            999999999999999999999999999779999999999998888888888876543

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=9.3e-13  Score=94.38  Aligned_cols=46  Identities=22%  Similarity=0.554  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-hhHHhhhCC-CCCHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHI  112 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~k-Ws~IA~~Lp-gRT~~qcKnRW~~~L  112 (344)
                      |++||.|||++|++++.+||.+ |..||..|| +||..||++||+.+|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.32  E-value=2.1e-13  Score=97.73  Aligned_cols=48  Identities=46%  Similarity=0.915  Sum_probs=43.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      |++||+|||++|+++|.+||.++|..||..|+.+|++.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999679999999998999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.17  E-value=4.6e-11  Score=82.87  Aligned_cols=47  Identities=34%  Similarity=0.726  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.05  E-value=3.8e-10  Score=77.20  Aligned_cols=44  Identities=25%  Similarity=0.588  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           69 KFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      +||.+||..|++++.+|| .+|..||+.|++||..+|++||+.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.95  E-value=2.3e-10  Score=79.37  Aligned_cols=48  Identities=38%  Similarity=0.892  Sum_probs=44.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccC
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      +++||++||++|+.++.+||..+|..||..++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999669999999999 9999999999998764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.82  E-value=1.3e-09  Score=113.60  Aligned_cols=120  Identities=21%  Similarity=0.279  Sum_probs=95.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC----C-------------------CCccccccccccccccccccccccccCCCC-CC
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGH----G-------------------SWRSLPEKADLQRCGKSCRLRWTNYLRPDI-KR   67 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~----~-------------------~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~i-kr   67 (344)
                      ++-+.|+.+||+.|-..|+.|-.    .                   -|..|...++. |+.+.++.+-++...|-- ++
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCcccccc
Confidence            34489999999999999998821    0                   15667777884 999998873333333322 89


Q ss_pred             CCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHH--HHhCCCCCCCCCCCCccc
Q 047101           68 GKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKR--LARMGIDPMTHRPKIPSL  133 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~--l~k~~~~p~e~kp~~~~~  133 (344)
                      |.||++|++.|..+|.++|+.|..|++.| ||.+..|++||..+.+..  .++..|+-++...++..+
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V  451 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTV  451 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999 999999999999999877  477778766666555444

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.79  E-value=1.6e-09  Score=74.06  Aligned_cols=45  Identities=44%  Similarity=0.909  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101           16 PWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        16 ~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      +||+|||+.|+.++.+||..+|..||..++ +|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999779999999998 899999999998653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=3.8e-07  Score=93.44  Aligned_cols=82  Identities=17%  Similarity=0.291  Sum_probs=75.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCccc
Q 047101           65 IKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKA  143 (344)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~~  143 (344)
                      ++.|-|+.-||+.|...|.+|| ++|+.|++.|+..|..||++||+.+|.+.+++..|.-+++..++.+......+|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            5678899999999999999999 789999999999999999999999999999999999999988888777778888888


Q ss_pred             ccc
Q 047101          144 SNL  146 (344)
Q Consensus       144 s~l  146 (344)
                      +.+
T Consensus        85 a~i   87 (617)
T KOG0050|consen   85 ADI   87 (617)
T ss_pred             HHH
Confidence            765

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.21  E-value=1.2e-07  Score=97.99  Aligned_cols=97  Identities=29%  Similarity=0.620  Sum_probs=84.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCC--CCCCCCCCHHHHHHHHHHHHHhC----
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRP--DIKRGKFSLHEEQTIIQLHALLG----   86 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P--~ikrg~WT~EED~~Ll~lv~~~G----   86 (344)
                      .+|.||+||++.|...+.++|. .|..|...++  |-+..||+||.+|..+  .+++++|+.||+.+|...+...-    
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhccCccccccccccccccccc-hhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            4689999999999999999995 9999987776  9999999999999998  68889999999999998886431    


Q ss_pred             ----CChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           87 ----NRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        87 ----~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                          ..|..|+.++++|...+|+.++..+.
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                45999999999999888887765544

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.63  E-value=2.4e-05  Score=58.79  Aligned_cols=48  Identities=19%  Similarity=0.376  Sum_probs=42.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCC---ccccccccccc-ccccccccccccc
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSW---RSLPEKADLQR-CGKSCRLRWTNYL   61 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W---~~IA~~~~~~R-t~kQCr~Rw~n~L   61 (344)
                      +-.||+||.++++++|+.+|.++|   ..|++.|...| +..||+.+++.|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            567999999999999999999899   99999988666 9999999887764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.50  E-value=0.00017  Score=73.12  Aligned_cols=49  Identities=24%  Similarity=0.448  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           64 DIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      .+-...||.+||.+||+++..|| ++|..||.++..||..+||.+|.++.
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            34456799999999999999999 99999999999999999999997654

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.32  E-value=0.00065  Score=51.04  Aligned_cols=46  Identities=15%  Similarity=0.223  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-Ch---hHHhhhCC-CC-CHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLGN-RW---SAIAAHLP-KR-TDNEIKNYWNTHI  112 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~-kW---s~IA~~Lp-gR-T~~qcKnRW~~~L  112 (344)
                      +-.||+||..+.+++++.+|. +|   ..|++.|. .| |..||+.+...+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999995 99   99999885 45 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.28  E-value=8.1e-05  Score=75.39  Aligned_cols=50  Identities=18%  Similarity=0.535  Sum_probs=46.3

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101           11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      .+-...||.+|+-+|+++++.||-|||..||.++| .|++.+|+++|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            45567899999999999999999999999999999 999999999998864

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.16  E-value=0.00058  Score=61.23  Aligned_cols=52  Identities=15%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CC----ChhHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 047101           66 KRGKFSLHEEQTIIQLHALL---GN----RWSAIAAHLPKRTDNEIKNYWNTHIKKRLAR  118 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~---G~----kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k  118 (344)
                      +...||.|||.+|-+.|..|   |.    -+..++..| +||..+|.-|||.++++++..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45689999999999999888   42    289999999 999999999999999977654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.99  E-value=0.00089  Score=62.10  Aligned_cols=100  Identities=21%  Similarity=0.370  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccccc--ccccccccccccccc-CCCC--------------------CCCCCCH
Q 047101           16 PWTPEEDQKLLDYIKKHGHGSWRSLPEKADL--QRCGKSCRLRWTNYL-RPDI--------------------KRGKFSL   72 (344)
Q Consensus        16 ~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~--~Rt~kQCr~Rw~n~L-~P~i--------------------krg~WT~   72 (344)
                      +|++++|-.|+.+|..-.  +-..|+..+..  .-|-..+.+||+..| +|.+                    .+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998765  45555544332  346677789998875 3433                    2358999


Q ss_pred             HHHHHHHHHHHHhCC---ChhHHhh-----hCCCCCHHHHHHHHHHHHHHHHH
Q 047101           73 HEEQTIIQLHALLGN---RWSAIAA-----HLPKRTDNEIKNYWNTHIKKRLA  117 (344)
Q Consensus        73 EED~~Ll~lv~~~G~---kWs~IA~-----~LpgRT~~qcKnRW~~~Lkk~l~  117 (344)
                      +||++|.........   .+.+|=.     +-++||+.++.++|..+.+..+-
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            999999997665542   3666632     23789999999999866555543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.81  E-value=0.0011  Score=52.36  Aligned_cols=52  Identities=27%  Similarity=0.553  Sum_probs=36.0

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------ChhHHhhhC----CCCCHHHHHHHHHHHHHHHHHhC
Q 047101           67 RGKFSLHEEQTIIQLHAL------LG--N------RWSAIAAHL----PKRTDNEIKNYWNTHIKKRLARM  119 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~------~G--~------kWs~IA~~L----pgRT~~qcKnRW~~~Lkk~l~k~  119 (344)
                      |..||.+|...||+++..      ++  .      -|..||..|    ..||..||+++|.+ |+++.++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~-L~~~Yk~~   70 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKN-LKKKYKKI   70 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHH-HHHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHH
Confidence            347999999999999877      21  1      399999987    36999999999988 55566553

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.58  E-value=0.0022  Score=65.75  Aligned_cols=54  Identities=15%  Similarity=0.220  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH--HHHHHhCCC
Q 047101           68 GKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI--KKRLARMGI  121 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L--kk~l~k~~~  121 (344)
                      ..||.+|..+|++.++.||..|.+||.|+..||..||--||-++-  .+-+.++..
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~~  335 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGDG  335 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhcccC
Confidence            389999999999999999999999999999999999999997542  344444433

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.57  E-value=0.0031  Score=48.63  Aligned_cols=51  Identities=16%  Similarity=0.384  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------CC-hhHHhhhCC-CCCHHHHHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLG--------NR-WSAIAAHLP-KRTDNEIKNYWNTHIKKRLA  117 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G--------~k-Ws~IA~~Lp-gRT~~qcKnRW~~~Lkk~l~  117 (344)
                      |.+||.+||+.|++.|.++.        ++ |.++++.-+ .+|-...|+||...|+.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            45899999999999997652        22 999999888 89999999999998877654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.53  E-value=0.0032  Score=65.69  Aligned_cols=46  Identities=13%  Similarity=0.341  Sum_probs=42.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTH  111 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~  111 (344)
                      .+..||.+|..+|++.++.||-.|.+||.++.+||..||--++..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3567999999999999999999999999999999999999988643

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.41  E-value=0.001  Score=68.16  Aligned_cols=46  Identities=20%  Similarity=0.473  Sum_probs=43.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccc
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY   60 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~   60 (344)
                      ....||.+|..+|++.|+.||. +|.+||.+++ .|+.-||..|+.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5679999999999999999997 9999999999 99999999999874

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.23  E-value=0.0018  Score=67.55  Aligned_cols=49  Identities=22%  Similarity=0.521  Sum_probs=44.5

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccc
Q 047101           10 NGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY   60 (344)
Q Consensus        10 ~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~   60 (344)
                      ...-++.||.+|+-+|+++|+.||. +|.+||.+++ .|+..||..++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            3455789999999999999999997 9999999999 99999999998764

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.89  E-value=0.011  Score=53.74  Aligned_cols=51  Identities=14%  Similarity=0.288  Sum_probs=42.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC-------hhHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLGNR-------WSAIAAHLPKRTDNEIKNYWNTHIKKRLA  117 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G~k-------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~  117 (344)
                      ++..||.|||.+|-+.|..|+..       ...++..| +||..+|..||+.+++++..
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            46789999999999998888622       66677777 99999999999999986543

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.68  E-value=0.0021  Score=49.49  Aligned_cols=51  Identities=39%  Similarity=0.651  Sum_probs=32.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------C--CCccccccccccccccccccccccccCCC
Q 047101           14 RGPWTPEEDQKLLDYIKKHGH------G--SWRSLPEKADLQRCGKSCRLRWTNYLRPD   64 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~------~--~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~   64 (344)
                      +-+||.|||+.|+++|..+..      |  =|..+++..+..++-.+-|+||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            457999999999999976632      1  28888888766788888899999988764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.66  E-value=0.039  Score=42.79  Aligned_cols=47  Identities=30%  Similarity=0.493  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHhC----C-------------ChhHHhhhC-----CCCCHHHHHHHHHHHHHH
Q 047101           68 GKFSLHEEQTIIQLHALLG----N-------------RWSAIAAHL-----PKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G----~-------------kWs~IA~~L-----pgRT~~qcKnRW~~~Lkk  114 (344)
                      ..||.+|...|++++.+|.    +             -|..|+..|     +.||..+++.+|.++...
T Consensus         3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            4699999999999998872    1             299999887     359999999999887654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.50  E-value=0.014  Score=57.64  Aligned_cols=46  Identities=26%  Similarity=0.403  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      ...|+.+||.+|++....+| ++|..||.+++.|+..+||.+|....
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34699999999999999999 99999999999999999999997654

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.01  E-value=0.0045  Score=48.77  Aligned_cols=46  Identities=30%  Similarity=0.732  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHHHHHH--h----CC-C------CCccccccc---cccccccccccccccc
Q 047101           15 GPWTPEEDQKLLDYIKK--H----GH-G------SWRSLPEKA---DLQRCGKSCRLRWTNY   60 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k--~----G~-~------~W~~IA~~~---~~~Rt~kQCr~Rw~n~   60 (344)
                      -.||.+|...|++++..  +    +. +      -|..||..|   |..|++.||+.+|.++
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            47999999999999887  1    11 1      399999886   4579999999999875

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=94.78  E-value=0.0067  Score=54.51  Aligned_cols=50  Identities=28%  Similarity=0.669  Sum_probs=41.9

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC-C-----CCccccccccccccccccccccccccCC
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGH-G-----SWRSLPEKADLQRCGKSCRLRWTNYLRP   63 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~-~-----~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P   63 (344)
                      .++-.||.|||.+|.+.|-+|-. |     .+.+++..++  ||+..|.-||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            35678999999999999999922 1     4788888887  9999999999988863

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.01  E-value=0.013  Score=57.87  Aligned_cols=49  Identities=14%  Similarity=0.445  Sum_probs=45.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccC
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      ---.|+.+|+-+|++..+..|-|+|..||..+| .|....|+.+|..++.
T Consensus        62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            345699999999999999999999999999999 9999999999988765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.48  E-value=0.014  Score=45.26  Aligned_cols=49  Identities=22%  Similarity=0.518  Sum_probs=39.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----------------CCCccccccc----ccccccccccccccccc
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGH----------------GSWRSLPEKA----DLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~----------------~~W~~IA~~~----~~~Rt~kQCr~Rw~n~L   61 (344)
                      ++..||.+|.+.|+++|.+|..                ..|..|+..+    +..|+..|++..|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999822                1499999875    22699999999998753

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=93.29  E-value=0.16  Score=57.52  Aligned_cols=100  Identities=15%  Similarity=0.316  Sum_probs=74.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccc----------------------------------------
Q 047101           15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCR----------------------------------------   54 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr----------------------------------------   54 (344)
                      +.|+.-|=..++.+..+||..+-..||..+. +++...++                                        
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588888888888999999888888888886 56666554                                        


Q ss_pred             --------cccccc-c-CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhh------------CCCCCHHHHHHHHHHH
Q 047101           55 --------LRWTNY-L-RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAH------------LPKRTDNEIKNYWNTH  111 (344)
Q Consensus        55 --------~Rw~n~-L-~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~------------LpgRT~~qcKnRW~~~  111 (344)
                              .-|... + .+..++..||.+||..|+-.+.+|| .+|..|-..            +..||+.++..|..++
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                    111110 0 1233344699999999999999999 789999432            2579999999999998


Q ss_pred             HHHH
Q 047101          112 IKKR  115 (344)
Q Consensus       112 Lkk~  115 (344)
                      |+--
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            8654

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.55  E-value=0.31  Score=41.76  Aligned_cols=51  Identities=25%  Similarity=0.397  Sum_probs=40.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----ChhHHhhhC------------CCCCHHHHHHHHHHHHHH
Q 047101           64 DIKRGKFSLHEEQTIIQLHALLGN----RWSAIAAHL------------PKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G~----kWs~IA~~L------------pgRT~~qcKnRW~~~Lkk  114 (344)
                      ..++..||.+||..|+-++.+||-    .|..|-..+            ..||+.++..|-+++|+-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            455678999999999999999995    798886543            479999999999998854

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.22  E-value=0.56  Score=37.23  Aligned_cols=45  Identities=27%  Similarity=0.482  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------ChhHHhhhCC-----CCCHHHHHHHHHHHHH
Q 047101           69 KFSLHEEQTIIQLHALL---GN----------RWSAIAAHLP-----KRTDNEIKNYWNTHIK  113 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~---G~----------kWs~IA~~Lp-----gRT~~qcKnRW~~~Lk  113 (344)
                      .||+++++.|++++.+.   |+          .|..|+..|.     ..|..||++||..+.+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            49999999999988553   32          2999998872     3688999999976554

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=91.14  E-value=0.037  Score=50.28  Aligned_cols=49  Identities=22%  Similarity=0.578  Sum_probs=37.9

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCC------CccccccccccccccccccccccccC
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGHGS------WRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~~~------W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      .++..||.|||.+|.+.|-.|+...      ...++..+.  |+..+|..||..+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            4678899999999999999886532      444444554  999999999966665

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=90.36  E-value=0.29  Score=49.69  Aligned_cols=84  Identities=19%  Similarity=0.304  Sum_probs=62.5

Q ss_pred             CCccccccccccccccccccccccccCCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCChh
Q 047101           36 SWRSLPEKADLQRCGKSCRLRWTNYLRPD-------------------------IKRGKFSLHEEQTIIQLHALLGNRWS   90 (344)
Q Consensus        36 ~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~-------------------------ikrg~WT~EED~~Ll~lv~~~G~kWs   90 (344)
                      .|.-++=... -|...--..||...-++.                         +....||.+|-+-|+.|.+.|.-+|.
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4665543333 566666677787763321                         11246999999999999999999999


Q ss_pred             HHhhh-----CCC-CCHHHHHHHHHHHHHHHHHhCC
Q 047101           91 AIAAH-----LPK-RTDNEIKNYWNTHIKKRLARMG  120 (344)
Q Consensus        91 ~IA~~-----Lpg-RT~~qcKnRW~~~Lkk~l~k~~  120 (344)
                      .||..     ++. ||-.++|+||+..-++-++...
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            99987     565 9999999999988877665543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=90.00  E-value=0.45  Score=48.31  Aligned_cols=46  Identities=22%  Similarity=0.359  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           69 KFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      +|+.+|-++...+...+|..+..|+..+|.|...|||-+|.+--+.
T Consensus       367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            7999999999999999999999999999999999999999865543

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=89.99  E-value=0.79  Score=47.47  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      ...||.||-.++-+++..||.++.+|-+.||.|+-..+..+|+...+.
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            347999999999999999999999999999999999999998876653

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=89.95  E-value=0.56  Score=46.35  Aligned_cols=51  Identities=20%  Similarity=0.365  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCChhHHhhhC----CCCCHHHHHHHHHHHHHHHHHh
Q 047101           67 RGKFSLHEEQTIIQLHALL----------GNRWSAIAAHL----PKRTDNEIKNYWNTHIKKRLAR  118 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~----------G~kWs~IA~~L----pgRT~~qcKnRW~~~Lkk~l~k  118 (344)
                      ...|+.+|-..||++..+.          +.-|..||+.+    --||+.|||++|.++. +++++
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~-k~Yk~  118 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK-KKYKK  118 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HHHHH
Confidence            3679999999999988653          23499999965    2499999999998866 44544

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=88.07  E-value=1.6  Score=47.64  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           68 GKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      ..||+.|..+.-+++..|-..+-.|++.++++|-.||-.+|++..|
T Consensus       620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK  665 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKK  665 (907)
T ss_pred             ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999877654

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=82.80  E-value=3  Score=29.71  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           72 LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        72 ~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      ++++..++.++-..|-.+.+||+.+ |.+...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4677888888888999999999999 9999999998876554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	344
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-23
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-21
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		4e-21
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		4e-21
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		4e-21
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-15
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		1e-10
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		8e-09
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-07
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-07
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-06
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-06

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12  LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
           L +GPWT EEDQK+++ +KK+G   W +L  K    R GK CR RW N+L P++K+  ++
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72  LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
             E++ I + H +LGNRW+ IA  LP RTDN +KN+WN+ IK+++
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 12  LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
           L +GPWT EEDQ+++++++K+G   W  + +     R GK CR RW N+L P++K+  ++
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72  LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
             E++ I Q H  LGNRW+ IA  LP RTDN +KN+WN+ +++++
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12  LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
           L +GPWT EEDQ+++  ++K+G   W S+  K    R GK CR RW N+L P++K+  ++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
             E++ I Q H  LGNRW+ IA  LP RTDN IKN+WN+ +++++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12  LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
           L +GPWT EEDQ+++  ++K+G   W S+  K    R GK CR RW N+L P++K+  ++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
             E++ I Q H  LGNRW+ IA  LP RTDN IKN+WN+ +++++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12  LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
           L +GPWT EEDQ+++  ++K+G   W S+  K    R GK CR RW N+L P++K+  ++
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72  LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
             E++ I Q H  LGNRW+ IA  LP RTDN IKN+WN+ +++++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 14  RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLH 73
           +GP+T  ED  + +Y+K++G  +W  +       R  K CR RW N+L P + +  ++  
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 74  EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLA 117
           E++TI + +  LG++WS IA  +P RTDN IKN WN+ I KR++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 13  KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSL 72
           K+  +TPEED+ L   + +HG   W+ +       R  + CR RW NYL P I    ++ 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73  HEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNT 110
            E+  ++Q     G +W+ IA   P RTD  IKN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 18  TPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQT 77
           T EED KL   + ++G   W  + +   + R  + CR RW NY+ P ++   +S  E+  
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 78  IIQLHALLGNRWSAIAAHLPKRTDNEIKNYW 108
           + Q +A  G +W+ I+  L  R+DN I+N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 65  IKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
           +K+  ++  E++ I Q H  LGNRW+ IA  LP RTDN IKN+WN+ +++++
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 64  DIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
           ++K+  ++  E++ + Q H  LGNRW+ IA  LP RTDN IKN+WN+ +++++
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
          L +GPWT EEDQ++++ ++K+G   W S+  K    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
          L +GPWT EEDQ+L+  ++K+G   W S+  K    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
          L +GPWT EEDQ+++  ++K+G   W S+  K    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	9e-69
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-67
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-65
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	6e-58
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-55
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-32
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-51
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-28
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-23
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-21
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	4e-15
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-12
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-04
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-11
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	9e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-04
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-08
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	4e-08
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	7e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	6e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	7e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	9e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  210 bits (537), Expect = 9e-69
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 14  RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLH 73
           +GP+T  ED  + +Y+K++G  +W  +       R  K CR RW N+L P + +  ++  
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSL 133
           E++TI + +  LG++WS IA  +P RTDN IKN WN+ I KR++          P     
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 134 ASADGDPKK 142
             A   PKK
Sbjct: 121 RKAADVPKK 129

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  206 bits (527), Expect = 1e-67
 Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 1/105 (0%)

Query: 12  LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFS 71
           L +GPWT EEDQ+++  ++K+G   W  + +     R GK CR RW N+L P++K+  ++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 72  LHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
             E++ I Q H  LGNRW+ IA  LP RTDN IKN+WN+ +++++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  202 bits (515), Expect = 2e-65
 Identities = 44/106 (41%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 11  GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKF 70
            L +GPWT EEDQ+++++++K+G   W  + +     R GK CR RW N+L P++K+  +
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 82

Query: 71  SLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
           +  E++ I Q H  LGNRW+ IA  LP RTDN +KN+WN+ +++++
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  182 bits (464), Expect = 6e-58
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 8   DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKR 67
           +    K+  +TPEED+ L   + +HG   W+ +       R  + CR RW NYL P I  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATF-PNRNARQCRDRWKNYLAPSISH 62

Query: 68  GKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTH 126
             ++  E+  ++Q     G +W+ IA   P RTD  IKN W T   K         + H
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  178 bits (453), Expect = 1e-55
 Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 1/106 (0%)

Query: 11  GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKF 70
            L +GPWT EEDQ+++  ++K+G   W  + +     R GK CR RW N+L P++K+  +
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 71  SLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRL 116
           +  E++ I Q H  LGNRW+ IA  LP RTDN IKN+WN+ +++++
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  118 bits (297), Expect = 1e-32
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 11  GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKF 70
            L +  WT EED+KL   ++++G   W+ +       R    C+ RW   L P++ +G +
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPW 61

Query: 71  SLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEI----KNYWNTHIKKR 115
           +  E+Q +I+L    G  RWS IA HL  R   +      N+ N  +KK 
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 111

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  165 bits (421), Expect = 1e-51
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 14  RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLH 73
           +  +T EED KL   + ++G   W  + +     R  + CR RW NY+ P ++   +S  
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLAR 118
           E+  + Q +A  G +W+ I+  L  R+DN I+N W    + R   
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  102 bits (258), Expect = 4e-28
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
          L +GPWT EEDQ+L+  ++K+G   W  + +     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 89.3 bits (222), Expect = 7e-23
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 7  SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSW----RSLPEKADLQRCGKSCRLRWTNYLR 62
          S  +  K G W   ED+ L   + K+G   W      L      ++  K C+ RW  +L 
Sbjct: 2  SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-----RKSAKQCKARWYEWLD 56

Query: 63 PDIKRGKFSLHEE 75
          P IK+ ++S    
Sbjct: 57 PSIKKTEWSGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 85.3 bits (212), Expect = 1e-21
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
          L +  WT EED+KL   ++++G   W+ +       R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 68.0 bits (167), Expect = 4e-15
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 9  TNGLKRGPWTPEEDQKLLDYIKKHGHGSW----RSLPEKADLQRCGKSCRLRWTNYLRPD 64
          +    +  WT EED++L   +++ G   W       P      R  + C+ RW   L   
Sbjct: 3  SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-----NRTDQQCQYRWLRVLSGP 57

Query: 65 IK 66
            
Sbjct: 58 SS 59

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 58.9 bits (143), Expect = 6e-12
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQ-RCGKSCRLRWTNYLR 62
          KR  W  EED+ L   ++K+G G+W  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 66  KRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLP--KRTDNEIKNYWNTHIKKR 115
           KR  +   E++ +       G   WS I  H     RT   +K+ W T  K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 56.4 bits (136), Expect = 7e-11
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 7  SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIK 66
          S  +  K+  W+ EE++KLL   K      WR++     + R    C   +   L    +
Sbjct: 2  SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPI--IGRTAAQCLEHYEFLLDKAAQ 58

Query: 67 R 67
          R
Sbjct: 59 R 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 65  IKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLAR 118
            K+ ++S  EE+ ++ L  L+  +W  I A +  RT  +   ++   + K   R
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQR 59

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 50.0 bits (120), Expect = 9e-09
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQ-RCGKSCRLRWTNYLRPDI 65
          K+  WT EE + +   ++K+G G+W ++ +      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 66  KRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLP--KRTDNEIKNYWNTHIKKRL 116
           K+ K+++ E + +       G   W+AI+ + P   RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 2  GRSPCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRS---LPEKADLQRCGKSCRLRWT 58
          G     D     R P++  E + L+  ++K G G WR       +    R     + +W 
Sbjct: 1  GSHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWK 60

Query: 59 NYLRPDI----KRGKFSLHEEQ--TIIQLHALLGNRWS 90
            +        +R    + +E    ++  H     +  
Sbjct: 61 TLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQM 98

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 7  SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQ-RCGKSCRLRWTNYLRPDI 65
          S TN  K+  WT EE + +   ++K+G G+W ++ +      R     + RW    R  +
Sbjct: 4  STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQ-RCGKSCRLRWTNYLRPDI 65
          KR  W  EED+ L   ++K+G G+W  +        R     + RW    +  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 50.1 bits (119), Expect = 4e-08
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 9/88 (10%)

Query: 13  KRGPWTPEEDQKLLDYIKKHGHGSWRS---LPEKADLQRCGKSCRLRWTNYLRPDIKRGK 69
            R P+T  E + L++ ++  G G WR       +    R     + +W   +       +
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 70  FSLHEEQT------IIQLHALLGNRWSA 91
                         ++   A      S 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 16 PWTPEEDQKLLDYIKKHGHGSWRSLPEKAD---LQRCGKSCRLRWTNYLR-----PDIKR 67
          P++  E + L++ ++  G G WR +  +A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GKFSLHEEQ--TIIQLHALLGNR 88
          G+  + ++    ++  HA    +
Sbjct: 62 GE-PVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 46.7 bits (110), Expect = 7e-07
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 13  KRGPWTPEEDQKLLDYIKKHGHGSWRS---LPEKADLQRCGKSCRLRWTNYLR-----PD 64
            R P++  E + L++ ++  G G WR            R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 65  IKRGK-FSLHEEQTIIQLHALLGNRWS 90
            +RG+         ++  HA    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9  TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61
          +       WT +E+  LL+ +   G G+W+ +  +    +  + C   +  Y 
Sbjct: 3  SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 54  RLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113
                +  R ++    ++  E  T  +     G  WSAIA  +  +T ++ KN++  + K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 114 K 114
           +
Sbjct: 63  R 63

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 7  SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
          S  +      W  +E+  L+D  +  G G+W  + +     R  + CR  +   
Sbjct: 2  SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 42.2 bits (99), Expect = 9e-06
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRG 68
            G +TPEE +KL +   KHG   W ++     L R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAA--LGRSASSVKDRC-RLMKDTCNTG 73

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 13 KRGPWTPEEDQKLLDYIKKH-----GHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIK 66
           +  +T EED+ +LD ++K+      H  +  +         G S R R+  YL   ++
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLE 64

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 62  RPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGI 121
                  K+++ E++   Q  A  G RW+ I+  +  RT  ++K+Y   + K    + G+
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKN-KVKCGL 62

Query: 122 DPMTHRPK 129
           D  T   K
Sbjct: 63  DKETPNQK 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.98
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.89
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.83
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.71
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.7
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.69
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.69
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.66
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.66
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.65
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.64
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.63
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.63
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.63
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.62
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.61
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.6
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.59
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.58
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.57
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.55
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.52
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.52
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.5
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.49
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.49
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.48
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.2
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.43
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.37
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.37
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.36
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.35
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.31
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.3
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.26
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.24
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.89
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.24
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.21
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.19
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.18
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.17
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.16
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.93
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.92
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.84
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.8
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.61
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.6
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.55
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.44
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.33
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.31
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.3
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.25
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.11
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.04
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.04
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.99
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.88
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.08
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.71
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.68
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.59
2crg_A	70	Metastasis associated protein MTA3; transcription	97.47
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.45
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.28
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.94
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.94
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.91
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.4
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.25
2crg_A	70	Metastasis associated protein MTA3; transcription	96.18
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.07
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.84
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	95.63
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.14
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	93.84
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	92.4
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.21
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.75
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	87.35

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=6.8e-34  Score=233.11  Aligned_cols=105  Identities=43%  Similarity=0.874  Sum_probs=99.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 047101           11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWS   90 (344)
Q Consensus        11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs   90 (344)
                      ++++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHHHHHHH
Q 047101           91 AIAAHLPKRTDNEIKNYWNTHIKKRL  116 (344)
Q Consensus        91 ~IA~~LpgRT~~qcKnRW~~~Lkk~l  116 (344)
                      .||++|||||++||++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=2.5e-33  Score=239.00  Aligned_cols=111  Identities=36%  Similarity=0.680  Sum_probs=106.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHh
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIA   93 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA   93 (344)
                      ||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047101           94 AHLPKRTDNEIKNYWNTHIKKRLARMGIDPMT  125 (344)
Q Consensus        94 ~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e  125 (344)
                      ++|||||++||++||+++|++++....++.+-
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~  112 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEI  112 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence            99999999999999999999998887765443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.98  E-value=2.8e-33  Score=230.98  Aligned_cols=104  Identities=30%  Similarity=0.574  Sum_probs=100.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHh
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIA   93 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA   93 (344)
                      ||+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHh
Q 047101           94 AHLPKRTDNEIKNYWNTHIKKRLAR  118 (344)
Q Consensus        94 ~~LpgRT~~qcKnRW~~~Lkk~l~k  118 (344)
                      ++|||||++||++||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999876554

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=6.5e-33  Score=235.14  Aligned_cols=109  Identities=40%  Similarity=0.836  Sum_probs=102.7

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 047101            7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLG   86 (344)
Q Consensus         7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G   86 (344)
                      ..+|++++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus        20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G   98 (128)
T 1h8a_C           20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG   98 (128)
T ss_dssp             --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence            346899999999999999999999999889999999998 9999999999999999999999999999999999999999


Q ss_pred             CChhHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 047101           87 NRWSAIAAHLPKRTDNEIKNYWNTHIKKRL  116 (344)
Q Consensus        87 ~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l  116 (344)
                      ++|+.||++|||||+++|++||+.++++++
T Consensus        99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999998764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=2.5e-34  Score=251.88  Aligned_cols=136  Identities=25%  Similarity=0.525  Sum_probs=92.0

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 047101           11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGN-RW   89 (344)
Q Consensus        11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~-kW   89 (344)
                      ++++++||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999995 79


Q ss_pred             hHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCccccccc
Q 047101           90 SAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASNLS  147 (344)
Q Consensus        90 s~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~~s~l~  147 (344)
                      ..||.+|||||+.||++||+++|++.+++.+|+++++..+..++...|.+|..|+...
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l  139 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL  139 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTS
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999887653

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=1.4e-32  Score=233.03  Aligned_cols=105  Identities=34%  Similarity=0.663  Sum_probs=100.7

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGN   87 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~   87 (344)
                      .+.+.+||+||+|||++|+++|++||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            567899999999999999999999998 9999999998 89999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           88 RWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      +|..||++|||||+++||+||+.++++
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999988765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=1.1e-30  Score=228.71  Aligned_cols=108  Identities=42%  Similarity=0.836  Sum_probs=103.0

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGN   87 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~   87 (344)
                      .+|++++|+||+|||++|+++|++||.++|..||..|+ +|+++||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            46899999999999999999999999878999999998 99999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 047101           88 RWSAIAAHLPKRTDNEIKNYWNTHIKKRL  116 (344)
Q Consensus        88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l  116 (344)
                      +|+.||++|||||+++||+||+.++++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999998764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.89  E-value=2.5e-25  Score=188.46  Aligned_cols=107  Identities=21%  Similarity=0.450  Sum_probs=82.0

Q ss_pred             ccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 047101           40 LPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKKRLAR  118 (344)
Q Consensus        40 IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k  118 (344)
                      ||+.|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||.+|||||+.||++||+++|++.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            677887 99999999999999999999999999999999999999995 7999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccccCCCCCccccccc
Q 047101          119 MGIDPMTHRPKIPSLASADGDPKKASNLS  147 (344)
Q Consensus       119 ~~~~p~e~kp~~~~~~~~~~~~k~~s~l~  147 (344)
                      .+|+++|+..+..++...|.+|..|+...
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l  108 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLL  108 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCHHHHGGGS
T ss_pred             ccCCHHHHHHHHHHHHHHCcCHHHHHHHC
Confidence            99999999999999999999999887653

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=7.2e-22  Score=151.32  Aligned_cols=67  Identities=27%  Similarity=0.568  Sum_probs=64.6

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHHH
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEE   75 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED   75 (344)
                      ..+++++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            46789999999999999999999999889999999999 99999999999999999999999999997

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=4.6e-18  Score=130.08  Aligned_cols=65  Identities=18%  Similarity=0.329  Sum_probs=62.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTH  126 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~  126 (344)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.||++||+++|++.+++.+|+++++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4788999999999999999999999 8999999999999999999999999999999999999886

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.71  E-value=5.6e-18  Score=131.67  Aligned_cols=59  Identities=20%  Similarity=0.290  Sum_probs=47.2

Q ss_pred             cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           53 CRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        53 Cr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      ..-||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 999999999998643

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2.2e-17  Score=124.94  Aligned_cols=61  Identities=21%  Similarity=0.299  Sum_probs=58.3

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 047101           60 YLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGI  121 (344)
Q Consensus        60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~  121 (344)
                      +|+|.+++++||.|||++|+++|++||.+|..||+ |+|||++|||+||+.+|++.+++..-
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            79999999999999999999999999999999999 88999999999999999999988653

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.69  E-value=1.2e-17  Score=155.23  Aligned_cols=106  Identities=20%  Similarity=0.317  Sum_probs=91.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCC-----CCccccccccccccccccccccccccCCCCC-----------------
Q 047101            9 TNGLKRGPWTPEEDQKLLDYIKKHGHG-----SWRSLPEKADLQRCGKSCRLRWTNYLRPDIK-----------------   66 (344)
Q Consensus         9 k~~lkKg~WT~EEDekL~~lV~k~G~~-----~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ik-----------------   66 (344)
                      .+.++|++||+|||++|+++|.++|..     .|..||+.|+ ||++.|||.||..+|++.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            457889999999999999999999764     2999999998 99999999999999999886                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 047101           67 ------------RGKFSLHEEQTIIQLHAL-L--------------------------------GN--------------   87 (344)
Q Consensus        67 ------------rg~WT~EED~~Ll~lv~~-~--------------------------------G~--------------   87 (344)
                                  +..||.+||-.|+..+.+ |                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999998876 1                                11              


Q ss_pred             -----------ChhHHhhhCCCCCHHHHHHHHHHHHHHH
Q 047101           88 -----------RWSAIAAHLPKRTDNEIKNYWNTHIKKR  115 (344)
Q Consensus        88 -----------kWs~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (344)
                                 .|..||+.+|+||.+.+|+||...|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       6999999999999999999999888654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.69  E-value=3e-17  Score=126.44  Aligned_cols=66  Identities=24%  Similarity=0.330  Sum_probs=60.6

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 047101           61 LRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHR  127 (344)
Q Consensus        61 L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~k  127 (344)
                      ++|.+++++||.|||++|+++|.+||.+|..||++|||||++|||+||+.+|++.++. ++++.+..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s   68 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN   68 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence            5789999999999999999999999999999999999999999999999999888776 77766543

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.66  E-value=8.3e-18  Score=142.24  Aligned_cols=83  Identities=19%  Similarity=0.381  Sum_probs=77.3

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccc---ccccccccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 047101            9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD---LQRCGKSCRLRWTNYLR-----PDIKRG-KFSLHEEQTII   79 (344)
Q Consensus         9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~---~~Rt~kQCr~Rw~n~L~-----P~ikrg-~WT~EED~~Ll   79 (344)
                      ++..++++||+|||+.|+++|++||.++|..|+..+.   .+|++.||++||.++|+     |.++++ +|+++|+.+|+
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~   91 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL   91 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence            4678899999999999999999999999999999852   38999999999999998     999999 99999999999


Q ss_pred             HHHHHhCCChhH
Q 047101           80 QLHALLGNRWSA   91 (344)
Q Consensus        80 ~lv~~~G~kWs~   91 (344)
                      .++..+|++|.+
T Consensus        92 ~~h~~~gn~~~~  103 (121)
T 2juh_A           92 AAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHccchhc
Confidence            999999999977

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=2e-17  Score=122.85  Aligned_cols=57  Identities=25%  Similarity=0.568  Sum_probs=54.4

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCC
Q 047101            9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIK   66 (344)
Q Consensus         9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ik   66 (344)
                      .|.+++++||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            5789999999999999999999999879999999998 99999999999999999876

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.65  E-value=2.3e-17  Score=119.15  Aligned_cols=52  Identities=44%  Similarity=0.944  Sum_probs=49.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCC
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD   64 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~   64 (344)
                      |+||+||+|||++|+++|.+||.++|..||..|+ +|+++||+.||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            6899999999999999999999888999999998 999999999999999985

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.64  E-value=6.1e-17  Score=137.15  Aligned_cols=80  Identities=21%  Similarity=0.355  Sum_probs=73.1

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccc---cccccccccccccccc-----CCCCCCCCCCHHH-HHHHH
Q 047101            9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD---LQRCGKSCRLRWTNYL-----RPDIKRGKFSLHE-EQTII   79 (344)
Q Consensus         9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~---~~Rt~kQCr~Rw~n~L-----~P~ikrg~WT~EE-D~~Ll   79 (344)
                      +...++++||+|||+.|+++|++||.++|..|+..+.   .+|++.||++||.+++     +|.++++.|+++| +.+|+
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            3467789999999999999999999999999998741   3899999999999999     8999999999999 89999


Q ss_pred             HHHHHhCCC
Q 047101           80 QLHALLGNR   88 (344)
Q Consensus        80 ~lv~~~G~k   88 (344)
                      +++..+|++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999975

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=1.2e-16  Score=118.68  Aligned_cols=55  Identities=22%  Similarity=0.444  Sum_probs=51.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRL  116 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l  116 (344)
                      +|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 699999999999999999999999998754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.63  E-value=1.7e-17  Score=140.37  Aligned_cols=86  Identities=15%  Similarity=0.273  Sum_probs=80.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCc
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPK  141 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k  141 (344)
                      .+..++|+||+|||++|+++|.+||.+|..||..|+|||..||+.||.++|.+.+++.+|+++|+..+..++...|.+|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 047101          142 KASNLS  147 (344)
Q Consensus       142 ~~s~l~  147 (344)
                      .|+...
T Consensus        86 ~Ia~~l   91 (126)
T 3osg_A           86 IIAKFF   91 (126)
T ss_dssp             HHHTTS
T ss_pred             HHHHHc
Confidence            887654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.63  E-value=4e-17  Score=117.82  Aligned_cols=52  Identities=31%  Similarity=0.745  Sum_probs=48.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCC
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD   64 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~   64 (344)
                      +++++||+|||++|+++|++||.++|..||..|+ +|+++||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999889999999998 999999999999999985

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.62  E-value=1.5e-17  Score=135.89  Aligned_cols=84  Identities=21%  Similarity=0.406  Sum_probs=78.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCcc
Q 047101           64 DIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKK  142 (344)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~  142 (344)
                      ++++|+||+|||++|+++|.+||. +|..||.+|||||+.||++||.++|.+.+++.+|+++++..+..++...|.+|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            368999999999999999999996 7999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccc
Q 047101          143 ASNLS  147 (344)
Q Consensus       143 ~s~l~  147 (344)
                      |+...
T Consensus        81 Ia~~l   85 (105)
T 1gv2_A           81 IAKLL   85 (105)
T ss_dssp             HHTTC
T ss_pred             HHHHc
Confidence            87653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=5.5e-16  Score=111.78  Aligned_cols=50  Identities=24%  Similarity=0.545  Sum_probs=46.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           65 IKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      +++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 999999999999999999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.61  E-value=7.6e-16  Score=117.51  Aligned_cols=62  Identities=24%  Similarity=0.313  Sum_probs=56.6

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHHHHHHHHhCCC
Q 047101           60 YLRPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHIKKRLARMGI  121 (344)
Q Consensus        60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~~Lkk~l~k~~~  121 (344)
                      ...|..++++||+|||++|+++|.+|| ++|..||.+|+  |||+.||++||+++|++.+.+...
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            346678899999999999999999999 79999999999  999999999999999998877654

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.60  E-value=1.1e-16  Score=122.21  Aligned_cols=63  Identities=22%  Similarity=0.403  Sum_probs=58.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccccccccccccccCCCCCCCCCC
Q 047101            9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADL-QRCGKSCRLRWTNYLRPDIKRGKFS   71 (344)
Q Consensus         9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~-~Rt~kQCr~Rw~n~L~P~ikrg~WT   71 (344)
                      ++..++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999999999999999998899999999986 8999999999999999999887653

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.59  E-value=9.4e-16  Score=110.68  Aligned_cols=50  Identities=32%  Similarity=0.688  Sum_probs=47.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           65 IKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      +++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999996 699999999999999999999999865

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.58  E-value=6.5e-17  Score=132.97  Aligned_cols=80  Identities=21%  Similarity=0.253  Sum_probs=75.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCccccc
Q 047101           67 RGKFSLHEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASN  145 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~~s~  145 (344)
                      +|+||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+++.+|+++++..+..++...|.+|..|+.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            579999999999999999995 8999999999999999999999999999999999999999999999999999998876


Q ss_pred             c
Q 047101          146 L  146 (344)
Q Consensus       146 l  146 (344)
                      .
T Consensus        81 ~   81 (107)
T 2k9n_A           81 F   81 (107)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.57  E-value=3.4e-16  Score=132.98  Aligned_cols=82  Identities=17%  Similarity=0.344  Sum_probs=78.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCccccc
Q 047101           67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASADGDPKKASN  145 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~~~~~k~~s~  145 (344)
                      +|+||+|||++|+++|.+|| ++|..||.+|||||..||+.||.++|.+.+.+.+|+++++..+..++...|.+|..|+.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            68999999999999999999 78999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccc
Q 047101          146 LSH  148 (344)
Q Consensus       146 l~h  148 (344)
                      ...
T Consensus        82 ~l~   84 (131)
T 3zqc_A           82 LIP   84 (131)
T ss_dssp             TST
T ss_pred             HcC
Confidence            653

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=3.1e-15  Score=108.55  Aligned_cols=49  Identities=29%  Similarity=0.431  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~~Lkk  114 (344)
                      ++++||+|||++|+++|.+|| ++|..||.+|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999999874

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=3.5e-15  Score=111.07  Aligned_cols=53  Identities=13%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      .+.+.+++||+|||++|+++|++|| ++|..||++|++||+.||++||+++|.+
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678899999999999999999999 8999999999999999999999998753

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.55  E-value=4.6e-16  Score=117.76  Aligned_cols=56  Identities=23%  Similarity=0.456  Sum_probs=49.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccccccccccccccCCCCC
Q 047101           11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADL-QRCGKSCRLRWTNYLRPDIK   66 (344)
Q Consensus        11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~-~Rt~kQCr~Rw~n~L~P~ik   66 (344)
                      ..+|++||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            467899999999999999999999899999988643 79999999999999998763

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=9.3e-16  Score=114.17  Aligned_cols=56  Identities=18%  Similarity=0.501  Sum_probs=52.1

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCC
Q 047101            9 TNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDI   65 (344)
Q Consensus         9 k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~i   65 (344)
                      .+.+++++||+|||++|+++|++||.++|..||+.|+ +|+++||+.||.++|.+..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence            3689999999999999999999999889999999998 8999999999999998753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=6.5e-15  Score=113.83  Aligned_cols=58  Identities=19%  Similarity=0.218  Sum_probs=53.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLG------NRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARM  119 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G------~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~  119 (344)
                      +|.+.+++||.|||++|+++|.+||      ++|..||++|+|||+.||++||+.+|.+.++..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5788999999999999999999999      789999999999999999999999998766543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.52  E-value=1.1e-14  Score=110.27  Aligned_cols=52  Identities=27%  Similarity=0.479  Sum_probs=47.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHHHHHHH
Q 047101           65 IKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHIKKRL  116 (344)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~~Lkk~l  116 (344)
                      .++++||+|||++|+++|.+|| ++|..||++++  |||+.||++||.+++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4789999999999999999999 68999999876  9999999999999988654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.50  E-value=2.4e-15  Score=109.17  Aligned_cols=50  Identities=28%  Similarity=0.538  Sum_probs=46.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccccccccccccccC
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADL-QRCGKSCRLRWTNYLR   62 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~-~Rt~kQCr~Rw~n~L~   62 (344)
                      ++|+||+|||++|+++|++||.++|..||..+++ +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999986 6999999999999875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.1e-15  Score=115.64  Aligned_cols=58  Identities=24%  Similarity=0.427  Sum_probs=53.6

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCC
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRG   68 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg   68 (344)
                      ..|.+++++||+|||++|+++|++||. +|..||. ++ +|+++||+.||.++|+|.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            468999999999999999999999998 9999999 66 7999999999999999877664

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.49  E-value=2.8e-14  Score=105.59  Aligned_cols=51  Identities=22%  Similarity=0.310  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC-CCCHHHHHHHHHHHH
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLP-KRTDNEIKNYWNTHI  112 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp-gRT~~qcKnRW~~~L  112 (344)
                      ...+.+++||+|||++|+++|++|| ++|..||++|+ +||+.||++||++++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3456788999999999999999999 89999999999 999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.2e-15  Score=116.53  Aligned_cols=61  Identities=21%  Similarity=0.335  Sum_probs=56.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCCccccccccccccccccccccccccCCCCCCCC
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGH-----GSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGK   69 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~-----~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~   69 (344)
                      .+|++++++||+|||++|+++|.+||.     .+|..||+.|+ +|++.||+.||.+||.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            468999999999999999999999996     68999999999 99999999999999998877764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.48  E-value=5.8e-15  Score=109.31  Aligned_cols=52  Identities=19%  Similarity=0.411  Sum_probs=48.1

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101           10 NGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        10 ~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      ..+.+++||+|||++|+++|++||.++|..||+.|+.+|+++||+.||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4567899999999999999999998899999999987899999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.20  E-value=4.2e-15  Score=119.13  Aligned_cols=56  Identities=23%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHH
Q 047101           60 YLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKR  115 (344)
Q Consensus        60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (344)
                      .+.|.+++++||.|||++|+++|.+||++|..||.+|+|||++||++||+++|++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56789999999999999999999999999999999999999999999999988753

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.43  E-value=1.1e-14  Score=112.05  Aligned_cols=59  Identities=19%  Similarity=0.279  Sum_probs=54.5

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCC
Q 047101            7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKR   67 (344)
Q Consensus         7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikr   67 (344)
                      +..|.+++++||+|||++|+++|++||. +|..||..|+ +|++.||+.||.++|++.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            3568999999999999999999999998 9999999998 999999999999999876665

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.37  E-value=1.8e-13  Score=113.10  Aligned_cols=80  Identities=23%  Similarity=0.382  Sum_probs=68.9

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccc---cccccccccccccccc-----CCCCCCCCCCHHHHHH-H
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD---LQRCGKSCRLRWTNYL-----RPDIKRGKFSLHEEQT-I   78 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~---~~Rt~kQCr~Rw~n~L-----~P~ikrg~WT~EED~~-L   78 (344)
                      .+...++++||+|||+.|+++|++||.++|..|+..+.   .+||+.+|++||.+++     +|.+++|.-+++|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            35678899999999999999999999999999998752   3899999999999998     6999999888887765 8


Q ss_pred             HHHHHHhCC
Q 047101           79 IQLHALLGN   87 (344)
Q Consensus        79 l~lv~~~G~   87 (344)
                      ++|+..+|+
T Consensus        87 ~~~~~~~~~   95 (105)
T 2aje_A           87 LNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877663

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.37  E-value=5e-13  Score=103.73  Aligned_cols=52  Identities=10%  Similarity=0.245  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      .+.+.+++||.+||++|++++.+||    ++|.+||++|||||.+||++||+.+++
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3567789999999999999999999    789999999999999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.36  E-value=2.2e-13  Score=108.12  Aligned_cols=69  Identities=23%  Similarity=0.511  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcccccc----cccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 047101           15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEK----ADLQRCGKSCRLRWTNYL-----RPDIKRG-KFSLHEEQTIIQLHAL   84 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~----~~~~Rt~kQCr~Rw~n~L-----~P~ikrg-~WT~EED~~Ll~lv~~   84 (344)
                      ++||+|||++|+++|++||.|+|..|++.    ++ +||+.+|++||.+++     +|.+++| +...+....++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            48999999999999999999999999985    55 899999999999987     6777776 5777777889988865

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.35  E-value=1.8e-13  Score=106.18  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=48.2

Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCC
Q 047101            5 PCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKR   67 (344)
Q Consensus         5 pc~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikr   67 (344)
                      --...|.+++|+||+|||++|+++|++||. +|..||+.+  +|++.||+.||.. |......
T Consensus        14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             -----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            345679999999999999999999999997 699999999  7999999999984 5444443

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.31  E-value=7.6e-13  Score=123.06  Aligned_cols=80  Identities=19%  Similarity=0.285  Sum_probs=63.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC------hhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccC
Q 047101           63 PDIKRGKFSLHEEQTIIQLHALLGNR------WSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLASA  136 (344)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~~  136 (344)
                      +.+++++||+|||++|+++|.++|++      |..||++|||||++|||+||+.+|++++... |+..++..++....  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~--   80 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD--   80 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence            35678999999999999999999975      9999999999999999999999999998844 77666665543333  


Q ss_pred             CCCCcccccc
Q 047101          137 DGDPKKASNL  146 (344)
Q Consensus       137 ~~~~k~~s~l  146 (344)
                      | .|..++.+
T Consensus        81 G-n~ikis~l   89 (246)
T 1ign_A           81 G-NLIKTKVL   89 (246)
T ss_dssp             S-CBCEESSC
T ss_pred             C-Cceeeecc
Confidence            3 37766633

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.30  E-value=1.2e-12  Score=102.82  Aligned_cols=48  Identities=13%  Similarity=0.264  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHH
Q 047101           64 DIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTH  111 (344)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~  111 (344)
                      ...+++||.|||++|+++|++||++|..||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.26  E-value=1.7e-12  Score=102.04  Aligned_cols=52  Identities=19%  Similarity=0.414  Sum_probs=48.4

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccc
Q 047101            7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY   60 (344)
Q Consensus         7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~   60 (344)
                      +.+....+++||+|||++|+++|++|| ++|..||+.++ +|++.||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            456677889999999999999999999 69999999999 89999999999998

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.24  E-value=3.9e-12  Score=107.53  Aligned_cols=55  Identities=25%  Similarity=0.481  Sum_probs=50.2

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 047101           61 LRPDIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHIKKR  115 (344)
Q Consensus        61 L~P~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~  115 (344)
                      +.+..++++||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            556778999999999999999999996 99999998    48999999999999999753

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.89  E-value=6.9e-13  Score=106.24  Aligned_cols=54  Identities=20%  Similarity=0.396  Sum_probs=50.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCC
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRP   63 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P   63 (344)
                      ..|++++|+||+|||++|+++|.+||. +|..||..|+ +|++.||+.||.++|+.
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            467999999999999999999999998 8999999998 99999999999999864

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.24  E-value=1.2e-11  Score=98.19  Aligned_cols=49  Identities=24%  Similarity=0.502  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHHHHHHH
Q 047101           68 GKFSLHEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHIKKRL  116 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~l  116 (344)
                      .+||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999996 99999996    899999999999999997553

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.21  E-value=1.5e-11  Score=101.65  Aligned_cols=52  Identities=27%  Similarity=0.478  Sum_probs=47.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhC----CCCCHHHHHHHHHHHHHH
Q 047101           63 PDIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAHL----PKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~~~Lkk  114 (344)
                      +..++++||.|||+.|+++|++||. +|+.|++.+    ++||+.+||+||.++++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4567899999999999999999996 999999965    899999999999998864

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.19  E-value=2.5e-11  Score=98.21  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=49.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHHHHH-HHhCCCCCC
Q 047101           66 KRGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHIKKR-LARMGIDPM  124 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~-l~k~~~~p~  124 (344)
                      .+++||.|||++|++++.+||    ++|.+||++|||||++||++||+.+++.. ....+..|.
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~   70 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF   70 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            367899999999999999996    68999999999999999999999988654 334444443

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.18  E-value=1e-11  Score=105.05  Aligned_cols=53  Identities=23%  Similarity=0.465  Sum_probs=47.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 047101           63 PDIKRGKFSLHEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHIKKR  115 (344)
Q Consensus        63 P~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~  115 (344)
                      ...++++||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||.++++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3456889999999999999999995 99999987    48999999999999999654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.17  E-value=4.1e-11  Score=90.07  Aligned_cols=49  Identities=18%  Similarity=0.337  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChhHHh---hhCCCCCHHHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLGNRWSAIA---AHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G~kWs~IA---~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      .+.+||+|||+.|++.|++||.+|..|+   .++++||.-++|+||+++.+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5789999999999999999999999999   578999999999999988753

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.16  E-value=3.5e-12  Score=98.93  Aligned_cols=55  Identities=13%  Similarity=0.343  Sum_probs=49.8

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCC---CCCccccccccccccccccccccccccC
Q 047101            7 SDTNGLKRGPWTPEEDQKLLDYIKKHGH---GSWRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus         7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~---~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      -+++...+++||+|||++|+++|.+||.   .+|..||..|+ +|+.+||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4677889999999999999999999993   47999999999 9999999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.2e-09  Score=88.32  Aligned_cols=66  Identities=15%  Similarity=0.203  Sum_probs=59.6

Q ss_pred             cccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhC-----CCCCHHHHHHHHHHHHHHHHHhCC
Q 047101           51 KSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHL-----PKRTDNEIKNYWNTHIKKRLARMG  120 (344)
Q Consensus        51 kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~L-----pgRT~~qcKnRW~~~Lkk~l~k~~  120 (344)
                      .=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+..+     ++||..++|+||+.+.++-+...+
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4567899999976    79999999999999999999999999999     589999999999999987777664

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=81.23  Aligned_cols=47  Identities=13%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      ..++||+||++++++++.+||.+|..||.+||+||..||..+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999999999997654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.84  E-value=2.2e-09  Score=82.94  Aligned_cols=50  Identities=12%  Similarity=0.189  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           64 DIKRGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      ..+.+.||.|||++|.+++.+|+    .+|.+||.+| |||..||++||+.+++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45678999999999999999997    6799999998 99999999999887655

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.80  E-value=5.3e-10  Score=90.44  Aligned_cols=48  Identities=10%  Similarity=0.364  Sum_probs=43.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---CCCcccccccccccccccccccccccc
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGH---GSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~---~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      .+++||+|||++|++++.+|+.   ..|..||..++ +|+.+||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3689999999999999999973   47999999999 999999999998764

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.61  E-value=3.7e-08  Score=91.03  Aligned_cols=49  Identities=14%  Similarity=0.291  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      ..++||.||+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999999987753

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.60  E-value=8.2e-09  Score=77.55  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccc---cccccccccccccccccccC
Q 047101           11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPE---KADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~---~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      ..++++||+|||+.|++.|++||. +|..|+.   .+. +|+..++++||+++.+
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            347899999999999999999998 9999994   444 8999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=1.7e-08  Score=75.11  Aligned_cols=52  Identities=13%  Similarity=0.210  Sum_probs=45.5

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      ++..-..++||+||++++++++.+||. +|..||..++ +|+..||+.+|....
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            444556799999999999999999995 9999998888 999999999997543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.44  E-value=2.1e-07  Score=72.14  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      ...||.+|+++|.+++..|+    .+|..||.++||||..+|+.||..++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45799999999999999998    46999999999999999999998774

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.33  E-value=6.9e-08  Score=74.50  Aligned_cols=50  Identities=16%  Similarity=0.258  Sum_probs=43.6

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCC---CCCcccccccccccccccccccccccc
Q 047101           10 NGLKRGPWTPEEDQKLLDYIKKHGH---GSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        10 ~~lkKg~WT~EEDekL~~lV~k~G~---~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      .+.+.+.||.|||++|.+++.+|+.   ..|..||+.+  +|+.++|+.||..+.
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence            3556789999999999999999984   4699999997  599999999998754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.31  E-value=3.6e-07  Score=92.68  Aligned_cols=45  Identities=16%  Similarity=0.295  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           68 GKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      ..||.+|-.++++++.+||.+|..||++++.||..|||++|..+.
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999997543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.30  E-value=5.3e-07  Score=66.96  Aligned_cols=47  Identities=21%  Similarity=0.409  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCC-hhHHhh-hCCCCCHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALL--------GNR-WSAIAA-HLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~-~LpgRT~~qcKnRW~~~Lk  113 (344)
                      |.+||.|||+.|++.|.++        |+. |..+++ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        433 999999 8999999999999988764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.25  E-value=1.3e-07  Score=70.22  Aligned_cols=48  Identities=27%  Similarity=0.531  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCCccccc-cccccccccccccccccccC
Q 047101           14 RGPWTPEEDQKLLDYIKKH--------GHGSWRSLPE-KADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~--------G~~~W~~IA~-~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      |.+||+|||+.|+++|.+|        |..-|..|++ .++ +++-.+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5689999999999999999        5556999999 676 9999999999998875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.11  E-value=4.9e-07  Score=70.04  Aligned_cols=48  Identities=21%  Similarity=0.398  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCCccccccccccccccccccccccccC
Q 047101           14 RGPWTPEEDQKLLDYIKKHGH---GSWRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~---~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      ...||.+|+++|.+++..|+.   +.|..||..++ +|+..+|+.||..+++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            367999999999999999975   46999999999 8999999999987754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.04  E-value=5.3e-06  Score=66.58  Aligned_cols=47  Identities=15%  Similarity=0.282  Sum_probs=43.5

Q ss_pred             CCCHHHHHHHHHHHHHhCC---ChhHHhhhCCCCCHHHHHHHHHHHHHHH
Q 047101           69 KFSLHEEQTIIQLHALLGN---RWSAIAAHLPKRTDNEIKNYWNTHIKKR  115 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (344)
                      -||.|||..||...++-|.   .|..||+.|.+|+.+||++||+.+++--
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            5999999999999999985   7999999999999999999999988643

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=9.8e-06  Score=60.62  Aligned_cols=50  Identities=12%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhh-hCCCCCHHHHHHHHHHH
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAA-HLPKRTDNEIKNYWNTH  111 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~~~  111 (344)
                      .|.++...||+||-++..+.+.+||.+|..|++ .|++||..+|...|+..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            467788899999999999999999999999999 59999999999988643

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.99  E-value=1.6e-06  Score=80.11  Aligned_cols=50  Identities=20%  Similarity=0.351  Sum_probs=45.5

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccC
Q 047101           11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      ....++||+||++++++++.+||. +|..||+.++ +|+..||+.+|+++.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            345689999999999999999996 9999999999 9999999999998764

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.88  E-value=2.9e-06  Score=65.66  Aligned_cols=43  Identities=19%  Similarity=0.362  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWN  109 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~  109 (344)
                      ...||.+|+++|.++...|+    .+|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            45799999999999999998    47999999999999999999884

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.08  E-value=1.9e-06  Score=65.62  Aligned_cols=44  Identities=16%  Similarity=0.339  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHHHHHHHhCC---ChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           69 KFSLHEEQTIIQLHALLGN---RWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      -||.|||..|+..+++-|.   .|..||+.| +|+++||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999996   799999999 9999999999998875

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.71  E-value=9.9e-05  Score=59.53  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             ccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCC-----CCCHHHHHHHHHHHHHHHHHhCC
Q 047101           56 RWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLP-----KRTDNEIKNYWNTHIKKRLARMG  120 (344)
Q Consensus        56 Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~Lp-----gRT~~qcKnRW~~~Lkk~l~k~~  120 (344)
                      .|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||+.+.++-++...
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            4555554    3589999999999999999999999998874     79999999999998887766543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.68  E-value=6.9e-05  Score=72.09  Aligned_cols=100  Identities=17%  Similarity=0.234  Sum_probs=78.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccc-------cccc---------------------------
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRL-------RWTN---------------------------   59 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~-------Rw~n---------------------------   59 (344)
                      -+.||..|...++.++.+||..+|..||..++ +++...++.       ||..                           
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~  188 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA  188 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999997 777766641       2210                           


Q ss_pred             ----------------ccCCCCCCCCCCHHHHHHHHHHHHHhCC----ChhHHhh------------hCCCCCHHHHHHH
Q 047101           60 ----------------YLRPDIKRGKFSLHEEQTIIQLHALLGN----RWSAIAA------------HLPKRTDNEIKNY  107 (344)
Q Consensus        60 ----------------~L~P~ikrg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~LpgRT~~qcKnR  107 (344)
                                      +..+..+...||.+||..||-++.+||-    .|..|..            ++..||+.+|..|
T Consensus       189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR  268 (304)
T 1ofc_X          189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR  268 (304)
T ss_dssp             HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                            0012234457999999999999999994    6999962            3467999999999


Q ss_pred             HHHHHHH
Q 047101          108 WNTHIKK  114 (344)
Q Consensus       108 W~~~Lkk  114 (344)
                      ..++++-
T Consensus       269 c~tLi~~  275 (304)
T 1ofc_X          269 CNTLITL  275 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.59  E-value=1.4e-05  Score=61.87  Aligned_cols=44  Identities=11%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---CCccccccccccccccccccccc
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHG---SWRSLPEKADLQRCGKSCRLRWT   58 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~---~W~~IA~~~~~~Rt~kQCr~Rw~   58 (344)
                      .+.||.||+++|.+++.+|+.+   .|.+||..++ +|+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4679999999999999999764   6999999999 899999999985

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.47  E-value=0.00022  Score=54.40  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChhHHhh-hCCCCCHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLGNRWSAIAA-HLPKRTDNEIKNYWNT  110 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~~  110 (344)
                      ...||+||-++..+.+.+||.+|..|++ .||+||..+|...|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5999999999999873

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.45  E-value=0.00016  Score=58.20  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTH  111 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~  111 (344)
                      ...||+||.++..+.+..||.+|..||..||+||..+|-.+|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            358999999999999999999999999999999999999988643

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.28  E-value=9.6e-05  Score=55.16  Aligned_cols=50  Identities=8%  Similarity=0.119  Sum_probs=44.5

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc-ccccccccccccccccc
Q 047101            8 DTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPE-KADLQRCGKSCRLRWTN   59 (344)
Q Consensus         8 ~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~-~~~~~Rt~kQCr~Rw~n   59 (344)
                      ..|.++...||+||-++..+++.+||. +|..|++ .++ .|+..||..-|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            457888899999999999999999997 9999998 477 8999999887754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.94  E-value=0.00022  Score=72.37  Aligned_cols=48  Identities=19%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      ....+||.||-+++++++.+||. +|..||..++ +|+..||+..|.++-
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45689999999999999999996 9999999999 899999999987653

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.94  E-value=0.00017  Score=58.14  Aligned_cols=49  Identities=18%  Similarity=0.377  Sum_probs=42.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCcccccccc----cccccccccccccccc
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD----LQRCGKSCRLRWTNYL   61 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~----~~Rt~kQCr~Rw~n~L   61 (344)
                      |+..+||.||++.|++++++|+- .|..|+..+.    .+|+..+++.||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            44589999999999999999997 9999999983    2699999999998653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.91  E-value=0.00082  Score=52.49  Aligned_cols=51  Identities=14%  Similarity=0.419  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CChhHHhhhCC----CCCHHHHHHHHHHHHHHHHHh
Q 047101           67 RGKFSLHEEQTIIQLHALLG----------NRWSAIAAHLP----KRTDNEIKNYWNTHIKKRLAR  118 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G----------~kWs~IA~~Lp----gRT~~qcKnRW~~~Lkk~l~k  118 (344)
                      ...||.+|-..||+++..+.          ..|..||..|.    .||+.||+++|.++.+ ..++
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k-~Yk~   68 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK-EFKK   68 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHH
Confidence            45799999999999997632          14999999873    6999999999987664 4444

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.40  E-value=0.00079  Score=54.11  Aligned_cols=44  Identities=11%  Similarity=0.302  Sum_probs=39.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccc
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTN   59 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n   59 (344)
                      ...||+||.++..+.+..||. +|..|++.++ .|+..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence            367999999999999999996 9999999998 9999999987753

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.25  E-value=0.011  Score=52.80  Aligned_cols=46  Identities=15%  Similarity=0.242  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CChhHHhh--hC------------CCCCHHHHHHHHHHHHH
Q 047101           68 GKFSLHEEQTIIQLHALLG-NRWSAIAA--HL------------PKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G-~kWs~IA~--~L------------pgRT~~qcKnRW~~~Lk  113 (344)
                      ..||.+||..|+..+.+|| ++|..|-.  .|            ..++...+..|-..+|+
T Consensus       135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence            3599999999999999999 99999964  21            12566789999877765

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.18  E-value=0.0013  Score=50.03  Aligned_cols=44  Identities=11%  Similarity=0.132  Sum_probs=39.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccc-ccccccccccccccccc
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPE-KADLQRCGKSCRLRWTN   59 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~-~~~~~Rt~kQCr~Rw~n   59 (344)
                      ...||+||-++..+++.+||. +|..|+. .++ +|+..+|..-|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            468999999999999999997 9999998 477 9999999987753

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.07  E-value=0.00045  Score=54.03  Aligned_cols=49  Identities=20%  Similarity=0.566  Sum_probs=39.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---------CCCccccccc---ccccccccccccccccc
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGH---------GSWRSLPEKA---DLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~---------~~W~~IA~~~---~~~Rt~kQCr~Rw~n~L   61 (344)
                      +...||.+|-..|+++...+..         ..|..||..|   |..|++.||+.+|.++.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999876421         1599999885   35799999999998764

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.84  E-value=0.0014  Score=49.91  Aligned_cols=48  Identities=19%  Similarity=0.299  Sum_probs=41.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccccccccccccccC
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGH--GSWRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~--~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      .--.||.|||..|+..+++.|.  .-|..||..+  +|++.|+..||+..+.
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            3357999999999999999986  3699999888  4999999999987654

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=95.63  E-value=0.028  Score=55.40  Aligned_cols=100  Identities=18%  Similarity=0.248  Sum_probs=74.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccc-------cccccc---------------------------
Q 047101           15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCR-------LRWTNY---------------------------   60 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr-------~Rw~n~---------------------------   60 (344)
                      +.||.-|=..++.+..+||..+-..||..|+.+++...++       .||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999988889998886345554444       111110                           


Q ss_pred             -------------c----CCCC-CCCCCCHHHHHHHHHHHHHhC----CChhHHhhh------------CCCCCHHHHHH
Q 047101           61 -------------L----RPDI-KRGKFSLHEEQTIIQLHALLG----NRWSAIAAH------------LPKRTDNEIKN  106 (344)
Q Consensus        61 -------------L----~P~i-krg~WT~EED~~Ll~lv~~~G----~kWs~IA~~------------LpgRT~~qcKn  106 (344)
                                   |    .+.. +...||.+||..||-++.+||    +.|..|-..            |..||+.+|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0    0111 344699999999999999999    569999433            35799999999


Q ss_pred             HHHHHHHH
Q 047101          107 YWNTHIKK  114 (344)
Q Consensus       107 RW~~~Lkk  114 (344)
                      |..++|+-
T Consensus       284 Rc~tLi~~  291 (374)
T 2y9y_A          284 RGNTLLQC  291 (374)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999954

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.14  E-value=0.0044  Score=49.70  Aligned_cols=45  Identities=16%  Similarity=0.342  Sum_probs=40.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC--CCCcccccccccccccccccccccc
Q 047101           14 RGPWTPEEDQKLLDYIKKHGH--GSWRSLPEKADLQRCGKSCRLRWTN   59 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~--~~W~~IA~~~~~~Rt~kQCr~Rw~n   59 (344)
                      ---||.|||..|+...++.|.  .-|..||+.++ +|+..|+.+|++.
T Consensus        33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~   79 (95)
T 1ug2_A           33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            357999999999999999975  36999999998 8999999999976

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=93.84  E-value=0.044  Score=48.83  Aligned_cols=38  Identities=32%  Similarity=0.533  Sum_probs=31.2

Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc
Q 047101            5 PCSDTNGLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPE   42 (344)
Q Consensus         5 pc~~k~~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~   42 (344)
                      |++.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus       125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            44555554556799999999999999999999999854

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=92.40  E-value=0.033  Score=44.83  Aligned_cols=48  Identities=19%  Similarity=0.395  Sum_probs=40.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCcccccccc----ccccccccccccccc
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD----LQRCGKSCRLRWTNY   60 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~----~~Rt~kQCr~Rw~n~   60 (344)
                      |+...||.||...|++++++|.- .|-.|+....    ..|+..+.++||..+
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            44578999999999999999996 9999998865    258888888888764

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.21  E-value=0.36  Score=36.17  Aligned_cols=47  Identities=13%  Similarity=0.067  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---hhHHhhhC--CCCCHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLGNR---WSAIAAHL--PKRTDNEIKNYWNTHI  112 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~L--pgRT~~qcKnRW~~~L  112 (344)
                      .+-.||+|..+..+++|.++|..   +..|-+.|  +|.|..+|+.+.+.+.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999954   78998876  6899999999876543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.75  E-value=0.29  Score=46.93  Aligned_cols=47  Identities=15%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      .+.||..+....+.++.+|| ..|..||..|+|+|..+|+.++.....
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            35799999999999999999 689999999999999999776655553

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=87.35  E-value=0.42  Score=45.07  Aligned_cols=29  Identities=45%  Similarity=0.757  Sum_probs=26.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcccccc
Q 047101           15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEK   43 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~   43 (344)
                      ..|+.+||..|+..|.+||.|+|..|..-
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            45999999999999999999999999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	344
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-21
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-08
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	8e-17
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-15
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-15
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-05
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-09
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-10
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-06
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-10
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-04
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	0.001

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (203), Expect = 8e-21
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
          L +GPWT EEDQ+L+  ++K+G   W  + +     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.0 bits (187), Expect = 1e-18
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD 64
          +  WT EED+KL   ++++G   W+ +       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (110), Expect = 7e-08
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 67  RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIK 113
           + +++  E++ + +L    G + W  IA +LP RTD + ++ W   + 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 72.4 bits (177), Expect = 8e-17
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDQKLLDYIKKHGHGSWRSLPEKAD---LQRCGKSCRLRWTNYLR-----PDIKR 67
          P++  E + L++ ++  G G WR +  +A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GKFSLHEE-QTIIQLHALLGNR 88
          G+    +    ++  HA    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (167), Expect = 1e-15
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQ-RCGKSCRLRWTNYLR 62
          KR  W  EED+ L   ++K+G G+W  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (162), Expect = 4e-15
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQ-RCGKSCRLRWTNYLRPDI 65
          K+  WT EE + +   ++K+G G+W ++ +      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 7e-05
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 66  KRGKFSLHEEQTIIQLHALLG-NRWSAIAAH--LPKRTDNEIKNYWNTHIKKRL 116
           K+ K+++ E + +       G   W+AI+ +     RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.3 bits (164), Expect = 5e-15
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 14 RGPWTPEEDQKLLDYIKKHGHG-----SWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRG 68
          +  +T EED+ +LD ++K+         +  +         G S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 69 KFSLHEEQTIIQLHA 83
                 + +     
Sbjct: 60 YEVDKFGKLVRDDDG 74

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 2e-12
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 67  RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK 113
           +  ++  E++ I Q H  LGNRW+ IA  LP RTDN IKN+WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLR 62
          +  WT EED+ +    K+ G+        K    R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAE--IAKLLPGRTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 2/63 (3%)

Query: 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLH 73
             WT EE +     + K G   W  + +     R     +     Y +  +K G     
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 74 EEQ 76
            Q
Sbjct: 60 PNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 1e-09
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 67  RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTH 126
             K+++ E++   Q  A  G RW+ I+  +  RT  ++K+Y   + K ++ + G+D  T 
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV-KCGLDKETP 60

Query: 127 RPK 129
             K
Sbjct: 61  NQK 63

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 7/49 (14%), Positives = 24/49 (48%)

Query: 66  KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKK 114
              +++  E+   +Q     G  + AI+  +  ++  ++KN++  + ++
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (111), Expect = 6e-08
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLR 62
              WT EE    +  I+K+G   ++++ +     +     +  + NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRR 51

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 66  KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKK 114
               +S  E++T  +        +  IA+ L ++T  E   Y+    K 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 16 PWTPEEDQKLLDYIKKHGHGSWRSLPEKADL--QRCGKSCRLRWTNYLRPDIKR 67
          PW+ +E++     +  +   +       A     R  +  +  +   L  DIK 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-10
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADL--QRCGKSCRLRW 57
             PWT  + + L   ++++  GS     + A     +  + C  R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 5/51 (9%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 62  RPDIKRGKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYW 108
           R       ++ ++++ +            + W  IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 2e-10
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 17 WTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY 60
          WT +E+  LL+ +   G G+W+ +  +    +  + C   +  Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 10 NGLKRGPWTPEEDQKLLDYIKKHG--HGSWRSLPEKADLQRCGKSCRLRWTNYLR 62
           G K   WT E D+ +L   ++ G    ++  + ++    +       R+   ++
Sbjct: 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELMQ 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 41  PEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNR---WSAIAAHLP 97
              A  +    +     +       K   ++   ++ I+ +    G +   +S I+  L 
Sbjct: 7   GAGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG 66

Query: 98  KRTDNEIKNYWNTHIK 113
            +T  E+ + +   ++
Sbjct: 67  NKTPVEVSHRFRELMQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.71
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.69
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.62
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.56
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.49
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.46
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.45
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.43
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.43
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.37
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.33
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.32
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.26
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.24
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.24
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.22
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.2
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.1
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.08
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.04
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.79
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.77
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.58
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.05
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.01
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.51
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.34
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.67
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.14
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.85
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.72
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	94.08
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	89.93
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.7
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	86.23

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=9.6e-19  Score=125.70  Aligned_cols=52  Identities=44%  Similarity=0.944  Sum_probs=50.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCC
Q 047101           12 LKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD   64 (344)
Q Consensus        12 lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~   64 (344)
                      |+||+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            6899999999999999999999889999999998 999999999999999995

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=7.2e-20  Score=144.54  Aligned_cols=70  Identities=19%  Similarity=0.230  Sum_probs=64.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CCccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHH
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHG-----SWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHAL   84 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~-----~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~   84 (344)
                      |++||+|||++|+++|.+||..     +|..||..|+ +|+++|||.||.++|+|.+++++||.+||++|+.++..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999864     3999999998 99999999999999999999999999999988866543

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.8e-17  Score=114.49  Aligned_cols=47  Identities=47%  Similarity=0.834  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      +++||+|||++|+++|++||++|+.||.+|||||++|||+||+.+||
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999874

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=8.8e-17  Score=115.31  Aligned_cols=50  Identities=32%  Similarity=0.699  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           65 IKRGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      ++||+||+|||++|+++|++|| ++|..||++|++||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 6899999999999999999999999865

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.4e-17  Score=118.47  Aligned_cols=50  Identities=30%  Similarity=0.755  Sum_probs=48.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCC
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPD   64 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~   64 (344)
                      |++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999989999999998 999999999999999985

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=6.7e-17  Score=127.31  Aligned_cols=69  Identities=17%  Similarity=0.215  Sum_probs=64.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------hhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCccccc
Q 047101           67 RGKFSLHEEQTIIQLHALLGNR------WSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGIDPMTHRPKIPSLAS  135 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~p~e~kp~~~~~~~  135 (344)
                      |++||+|||++|+++|.+||.+      |..||.+|||||++|||+||+++|.+++++..|++++++++.+....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            5799999999999999999964      99999999999999999999999999999999999999988776543

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.5e-15  Score=107.84  Aligned_cols=48  Identities=25%  Similarity=0.568  Sum_probs=45.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHIKK  114 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (344)
                      +++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999999975

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.53  E-value=3.7e-16  Score=121.95  Aligned_cols=74  Identities=20%  Similarity=0.449  Sum_probs=60.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccc---ccccccccccccccccc-----CCCCCCCCCCHHHHHHHHHHHHHhC
Q 047101           15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEKA---DLQRCGKSCRLRWTNYL-----RPDIKRGKFSLHEEQTIIQLHALLG   86 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~~---~~~Rt~kQCr~Rw~n~L-----~P~ikrg~WT~EED~~Ll~lv~~~G   86 (344)
                      .+||+|||++|+++|++||.++|..|+..+   ..+|++.||++||.++|     +|..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            379999999999999999999999998763   34899999999999988     4677889999776   444444455


Q ss_pred             CChhH
Q 047101           87 NRWSA   91 (344)
Q Consensus        87 ~kWs~   91 (344)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56653

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-15  Score=109.74  Aligned_cols=54  Identities=24%  Similarity=0.507  Sum_probs=48.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCcccccccc-ccccccccccccccccCCCCC
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD-LQRCGKSCRLRWTNYLRPDIK   66 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~-~~Rt~kQCr~Rw~n~L~P~ik   66 (344)
                      |+++||+|||++|+++|++||.++|..|+..++ .+|++.||++||.++++|.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            588999999999999999999989999998743 389999999999999988763

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-14  Score=102.79  Aligned_cols=51  Identities=25%  Similarity=0.444  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CChhHHhhh--CCCCCHHHHHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLG-NRWSAIAAH--LPKRTDNEIKNYWNTHIKKRL  116 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-~kWs~IA~~--LpgRT~~qcKnRW~~~Lkk~l  116 (344)
                      ++++||+|||++|+++|++|| ++|..||+.  |++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            478999999999999999999 689999998  569999999999999887653

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.9e-14  Score=100.27  Aligned_cols=48  Identities=29%  Similarity=0.452  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CChhHHhhhC--CCCCHHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLG-NRWSAIAAHL--PKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-~kWs~IA~~L--pgRT~~qcKnRW~~~Lk  113 (344)
                      ++++||+|||+.|+++|.+|| ++|..|++.+  .+||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 5899999885  48999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.7e-14  Score=103.28  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q 047101           67 RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIKKRLARMGID  122 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~~~~  122 (344)
                      ...||.|||.+|++++..||.+|..||++||+||+.||++||+.++++..+.....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~   57 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDK   57 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            35799999999999999999999999999999999999999999998876554433

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8e-15  Score=104.86  Aligned_cols=50  Identities=28%  Similarity=0.505  Sum_probs=45.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCcccccccc-ccccccccccccccccC
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD-LQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~-~~Rt~kQCr~Rw~n~L~   62 (344)
                      |+++||+|||++|+++|++||.++|..|+..++ .+|++.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            589999999999999999999999999998754 37999999999998653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.7e-14  Score=101.28  Aligned_cols=47  Identities=23%  Similarity=0.569  Sum_probs=44.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccC
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      |++||+|||++|+++|++||. +|..||..|+ +|++.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999997 8999999998 9999999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.9e-14  Score=99.90  Aligned_cols=44  Identities=23%  Similarity=0.676  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccc
Q 047101           16 PWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY   60 (344)
Q Consensus        16 ~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~   60 (344)
                      .||+|||++|+++|++||.++|..||+.++ +|++.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999999999999999 99999999999876

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.2e-13  Score=93.44  Aligned_cols=43  Identities=16%  Similarity=0.359  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHH
Q 047101           69 KFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTH  111 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~~  111 (344)
                      .||.|||.+|+++|.+|| ++|..||++|++||+.||+.||+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            499999999999999999 6799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=95.81  Aligned_cols=50  Identities=10%  Similarity=0.221  Sum_probs=45.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----ChhHHhhhCCCCCHHHHHHHHHHH
Q 047101           62 RPDIKRGKFSLHEEQTIIQLHALLGN----RWSAIAAHLPKRTDNEIKNYWNTH  111 (344)
Q Consensus        62 ~P~ikrg~WT~EED~~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~~~  111 (344)
                      .+...+++||.|||++|+++|.+||.    +|..||.+|||||..||++||..+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45677889999999999999999994    599999999999999999999754

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.5e-13  Score=97.10  Aligned_cols=52  Identities=15%  Similarity=0.394  Sum_probs=47.2

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCC---CCcccccccccccccccccccccc
Q 047101            7 SDTNGLKRGPWTPEEDQKLLDYIKKHGHG---SWRSLPEKADLQRCGKSCRLRWTN   59 (344)
Q Consensus         7 ~~k~~lkKg~WT~EEDekL~~lV~k~G~~---~W~~IA~~~~~~Rt~kQCr~Rw~n   59 (344)
                      .+++..++++||+|||++|+++|.+||.+   +|..||..|+ +|+++||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            35678889999999999999999999976   4999999999 9999999999964

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.24  E-value=5.4e-12  Score=93.00  Aligned_cols=46  Identities=22%  Similarity=0.426  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----ChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           68 GKFSLHEEQTIIQLHALLGN----RWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      .+||+|||++|++++.+||.    +|.+||.+|||||..||++||+.+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999994    49999999999999999999966554

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.24  E-value=5.3e-12  Score=97.98  Aligned_cols=53  Identities=23%  Similarity=0.428  Sum_probs=47.3

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChhHHhhh----CCCCCHHHHHHHHHHHHHHHHHhCCC
Q 047101           69 KFSLHEEQTIIQLHALLG-NRWSAIAAH----LPKRTDNEIKNYWNTHIKKRLARMGI  121 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~l~k~~~  121 (344)
                      +||.|||+.|+++|.+|| ++|..|++.    +++||+.||++||+++|+.......+
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~   59 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ   59 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGG
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCccc
Confidence            799999999999999999 589999975    68999999999999999877655443

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=9.8e-12  Score=98.75  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=61.1

Q ss_pred             cccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC---hhHHhhhCCCCCHHHHHHHHHHHHHHH
Q 047101           47 QRCGKSCRLRWTNYLRPDIKRGKFSLHEEQTIIQLHALLGNR---WSAIAAHLPKRTDNEIKNYWNTHIKKR  115 (344)
Q Consensus        47 ~Rt~kQCr~Rw~n~L~P~ikrg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (344)
                      ..+..++..++.+...+..+...||.|||++||+.++++|.+   |..||+.|+||+++||++||..+++-.
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            466667778888888888888899999999999999999977   999999999999999999998888543

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.1e-13  Score=99.24  Aligned_cols=58  Identities=19%  Similarity=0.286  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccCCCCCCCCCCHHH
Q 047101           15 GPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLRPDIKRGKFSLHE   74 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P~ikrg~WT~EE   74 (344)
                      ..||+|||++|+++|.+||. +|..||..|+ +|+..||+.||.+++++..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            57999999999999999995 9999999999 9999999999999998877777665443

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.3e-11  Score=89.86  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      ...+||+||+++|++++.+||.+|..||.+||+||..||+++|+...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            44689999999999999999999999999999999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.9e-11  Score=88.65  Aligned_cols=47  Identities=15%  Similarity=0.304  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      ..+||++|+.+|++++..||.+|..||.+|||||..||++||+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            35799999999999999999999999999999999999999987653

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.04  E-value=1.2e-11  Score=91.21  Aligned_cols=44  Identities=11%  Similarity=0.403  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---Ccccccccccccccccccccccc
Q 047101           15 GPWTPEEDQKLLDYIKKHGHGS---WRSLPEKADLQRCGKSCRLRWTN   59 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k~G~~~---W~~IA~~~~~~Rt~kQCr~Rw~n   59 (344)
                      .+||+|||++|+++|.+||.+.   |..||..|+ +|++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999864   999999999 9999999999953

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.4e-10  Score=82.83  Aligned_cols=47  Identities=21%  Similarity=0.415  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccccC
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      ..+||+|||++|++++..||. +|..||..|+ +|+..||+.+|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            367999999999999999996 8999999999 9999999999988753

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.8e-10  Score=82.93  Aligned_cols=49  Identities=10%  Similarity=0.215  Sum_probs=43.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Q 047101           11 GLKRGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL   61 (344)
Q Consensus        11 ~lkKg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L   61 (344)
                      .-...+||+|||++|+++|.+||. +|..||..++ +|+..||+.+|....
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            344578999999999999999996 9999999998 999999999997643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=3.6e-09  Score=83.75  Aligned_cols=51  Identities=18%  Similarity=0.356  Sum_probs=45.6

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCC--Cccccccccccccccccccccccc
Q 047101            9 TNGLKRGPWTPEEDQKLLDYIKKHGHGS--WRSLPEKADLQRCGKSCRLRWTNY   60 (344)
Q Consensus         9 k~~lkKg~WT~EEDekL~~lV~k~G~~~--W~~IA~~~~~~Rt~kQCr~Rw~n~   60 (344)
                      +.|.+...||.|||+.|++.++++|...  |..|+++++ +|++.||+.||..+
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            4577788999999999999999999633  999999998 99999999999764

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.3e-06  Score=61.91  Aligned_cols=44  Identities=14%  Similarity=0.232  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHHH
Q 047101           68 GKFSLHEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHI  112 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~~L  112 (344)
                      ..||.+|+.+|.+++.+|+    .+|..||..| |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999996    5799999999 999999999996543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=4.8e-06  Score=59.48  Aligned_cols=43  Identities=19%  Similarity=0.282  Sum_probs=39.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCChhHHhhh-CCCCCHHHHHHHHHHH
Q 047101           69 KFSLHEEQTIIQLHALLGNRWSAIAAH-LPKRTDNEIKNYWNTH  111 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G~kWs~IA~~-LpgRT~~qcKnRW~~~  111 (344)
                      .||+||-.+..+.+..||.+|..|++. +|+||..||.+.|+..
T Consensus         3 ~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            699999999999999999999999985 6999999999998743

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=6.1e-06  Score=59.61  Aligned_cols=44  Identities=18%  Similarity=0.340  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CCccccccccccccccccccccccc
Q 047101           15 GPWTPEEDQKLLDYIKKHGHG---SWRSLPEKADLQRCGKSCRLRWTNY   60 (344)
Q Consensus        15 g~WT~EEDekL~~lV~k~G~~---~W~~IA~~~~~~Rt~kQCr~Rw~n~   60 (344)
                      +.||+||+.+|.+++.+|..+   .|..||..++  |+..+|..||..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            479999999999999999754   5999999995  9999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=2.2e-05  Score=55.93  Aligned_cols=44  Identities=11%  Similarity=0.160  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccccccccccccccccccc
Q 047101           16 PWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNY   60 (344)
Q Consensus        16 ~WT~EEDekL~~lV~k~G~~~W~~IA~~~~~~Rt~kQCr~Rw~n~   60 (344)
                      .||+||-+++.+++..||. +|..|++.+.++|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            5999999999999999997 9999998654499999999988653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00045  Score=49.51  Aligned_cols=47  Identities=19%  Similarity=0.366  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------CC-hhHHhh-hCCCCCHHHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLG--------NR-WSAIAA-HLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G--------~k-Ws~IA~-~LpgRT~~qcKnRW~~~Lk  113 (344)
                      |.+||.+||+.|++.|+++.        +. |...++ .++.+|-...|+||..+|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999873        22 999985 6899999999999988774

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.0025  Score=42.98  Aligned_cols=45  Identities=18%  Similarity=0.344  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChhHHhhhC---CCCCHHHHHHHHHHHH
Q 047101           68 GKFSLHEEQTIIQLHALLGNRWSAIAAHL---PKRTDNEIKNYWNTHI  112 (344)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G~kWs~IA~~L---pgRT~~qcKnRW~~~L  112 (344)
                      ..||.||-.-|+.-|+.+|+.|..|-=.+   |||+.-++..+|+.++
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            46999999999999999999999996544   7999999999987653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00063  Score=48.72  Aligned_cols=48  Identities=25%  Similarity=0.484  Sum_probs=38.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------CCccccc-cccccccccccccccccccC
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHG--------SWRSLPE-KADLQRCGKSCRLRWTNYLR   62 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~--------~W~~IA~-~~~~~Rt~kQCr~Rw~n~L~   62 (344)
                      +-+||.|||+.|+++|.++...        =|..+++ ..+ .++-.+-|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4589999999999999998432        2888875 455 7899999999988774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.14  E-value=0.0057  Score=44.19  Aligned_cols=45  Identities=13%  Similarity=0.110  Sum_probs=38.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCh---hHHhhh--CCCCCHHHHHHHHHHH
Q 047101           67 RGKFSLHEEQTIIQLHALLGNRW---SAIAAH--LPKRTDNEIKNYWNTH  111 (344)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G~kW---s~IA~~--LpgRT~~qcKnRW~~~  111 (344)
                      +-.||+||.++.++++..+|..|   ..|.+.  ++++|..||+.+-..+
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            45799999999999999999877   467666  5899999999887655

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.029  Score=40.97  Aligned_cols=48  Identities=21%  Similarity=0.261  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----ChhHHhhhCCCCCHHHHHHHHHHHHH
Q 047101           66 KRGKFSLHEEQTIIQLHALLGN----RWSAIAAHLPKRTDNEIKNYWNTHIK  113 (344)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (344)
                      ..+.|+++|-++|-.++..+..    -|..+|..+..||..+|...|...++
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            4568999999999999999873    39999999999999999999977643

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0053  Score=45.02  Aligned_cols=49  Identities=20%  Similarity=0.367  Sum_probs=42.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhC---CCCCccccccccccccccccccccccccCC
Q 047101           14 RGPWTPEEDQKLLDYIKKHG---HGSWRSLPEKADLQRCGKSCRLRWTNYLRP   63 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G---~~~W~~IA~~~~~~Rt~kQCr~Rw~n~L~P   63 (344)
                      -+.|+++|-++|-.++....   .+-|..||..++ .|++..|...|...+.-
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            47899999999999998664   456999999999 99999999999876654

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.08  E-value=0.0088  Score=43.16  Aligned_cols=48  Identities=15%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCC--cccccccc-ccccccccccccccc
Q 047101           13 KRGPWTPEEDQKLLDYIKKHGHGSW--RSLPEKAD-LQRCGKSCRLRWTNY   60 (344)
Q Consensus        13 kKg~WT~EEDekL~~lV~k~G~~~W--~~IA~~~~-~~Rt~kQCr~Rw~n~   60 (344)
                      .+-.||+||.++.+++|+.+|...|  ..|...|+ .+++..||+-+-+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3567999999999999999997444  35655553 267888888665544

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.93  E-value=0.24  Score=39.89  Aligned_cols=52  Identities=21%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CC---hhHHhhh------------CCCCCHHHHHHHHHHHHHHH
Q 047101           64 DIKRGKFSLHEEQTIIQLHALLG-NR---WSAIAAH------------LPKRTDNEIKNYWNTHIKKR  115 (344)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G-~k---Ws~IA~~------------LpgRT~~qcKnRW~~~Lkk~  115 (344)
                      ..++-.+|.|||.-|+-.+.+|| .+   |..|-..            +..||+.++..|.+++|+--
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            44445699999999999999999 55   8887422            25799999999999988643

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.70  E-value=0.5  Score=32.31  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=37.0

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHH
Q 047101           69 KFSLHEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWN  109 (344)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~  109 (344)
                      .|+.-|=..++.+.++|| .+-..||..|.|+|..+|+.+..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Confidence            389999999999999999 68999999999999999987653

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.23  E-value=0.085  Score=35.31  Aligned_cols=45  Identities=22%  Similarity=0.282  Sum_probs=34.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccc--cccccccccccccc
Q 047101           14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKAD--LQRCGKSCRLRWTN   59 (344)
Q Consensus        14 Kg~WT~EEDekL~~lV~k~G~~~W~~IA~~~~--~~Rt~kQCr~Rw~n   59 (344)
                      +..||.||-.-|...|+++|. .|..|-=.++  .||+.......|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            357999999999999999997 9999865544  36777666665543