Citrus Sinensis ID: 047130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-----
Protein Sequence
KGSHRQGISGVEVLRAGLKMTELNPRPFVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQTTV
Secondary Structure (PSIPRED)
cccccccccHHHHHcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEEEccccccccHHHHHccccccccccccHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEcccccccccccccccccHHHHHHHHHHccccccEEEEEEcccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHcccccEEEEccccccccccccccccccccccccHHHHHHHcccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHEEEEEEcHcccccccccccccEcccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHEEEHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccHHHcHHHHcccccccEEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEEEEcccccccEEEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEccccccccccEccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHcccccEEEEEEEEcccccccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHcccccEEEEEccccccccHHcccHcHHHcccccccHHHcccccccccEEEEEEEEccccc
Coil and Loop (DISEMBL)
KGSHRQGISGVEVLRAGlkmtelnprpfvgsenqgynlssrfcmpvppyvnsngIWQFIgkagnhpwdaslprLELQIIVAFAVTHACHFVLKrfgipmiasqitgglilgqaipglnryykhvlfsdtslgtldLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSlsrfpsiaCLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYhaplhsayRNLGIMVVYLLAVVFVVRPAMLWVvkqtpegkpvnslhIHNIIMLALGagyisdlfgqhvyfgpfvfglavpagpplgsalvekldpmvsgLFIPLVVTSasmrtnlsdikllddnlAKSTAVIVAVVVLAKVAttmipplyckvpKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFlydpsrkyagyqkrnimqhskaSGELRILAciyrpdniPAIIKFLQascpkrgslVTVYVLHLIDLRgraaplfiSHKMqkktvsnrsyseNVILSFKLFeeknwgtacvypftaisppklmhEDVCMLALDKLASIVvlpfhrkwfidgsiesddntkralncsvlerapcsvgilidrgrigrfisselslgssFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVldsevlkevkpennfNQRVKYVVEMVNEGQETLAKIQsvvpkydlvivgrrdntetpqtsgldrcrefpelgivgnclvtedlpgrYSVLVVQQQQTTV
Flexible Loop (DISEMBL)
kgshrqgisgvEVLRAGLKMTELNPRPFVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVAttmipplyckVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHkmqkktvsnrsySENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFidgsiesddntKRALNCsvlerapcsvgilidrgrIGRFISselslgssFRVAMIFLGGSDDREALTLAKrmsqntsinltVFRFIVKTDEMISTNWEKVldsevlkevkpennfnqRVKYVVEMVNEGQETlakiqsvvpkydlvivgrrdntetpqtsgldrcreFPELGIVGNCLVTEDLPGRYSVLVVQQQQTTV
Low Complexity Region (SEG)
KGSHRQGISGVEVLRAGLKMTELNPRPFVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQktgkkslftglltllipfllgAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMvvyllavvfvvRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTavivavvvlakvaTTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSvlvvqqqqttv
Disordered region (IsUnstruct)
************VLRAGLK********FVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRD********GLDRCREFPELGIVGNCLVTEDLPGRYSVLVV*******
Disordered Region (DISOPRED)
**********VEVLRAGLKMTELNPRPFVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRK********************ILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRA************************LSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKW***********TKRALNCSVLERAPCSVGILIDRGRI***********SSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKT***********LDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRD*************REFPELGIVGNCLVTEDLPGRYSVLVVQQQQ***
Disordered Region (DISEMBL)
KGSHRQGISGVEVLRAGLKMTELNPRPFVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQTTV
Disordered Region (DISPRO)
****RQGISGVEVLRAGLKMTELNPRPFVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQ*****NRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRI*********LGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQT**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KGSHRQGISGVEVLRAGLKMTELNPRPFVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQTTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	815	2.2.26 [Sep-21-2011]
Q9FFB8	822	Cation/H(+) antiporter 3	yes	no	0.923	0.916	0.375	1e-150
Q9FYC1	817	Cation/H(+) antiporter 4	no	no	0.941	0.938	0.370	1e-148
Q3EDG3	815	Cation/H(+) antiporter 5	no	no	0.922	0.922	0.374	1e-140
Q9SIT5	821	Cation/H(+) antiporter 15	no	no	0.907	0.901	0.371	1e-136
Q58P71	816	Cation/H(+) antiporter 8	no	no	0.928	0.927	0.372	1e-136
Q8GX92	818	Cation/H(+) antiporter 6A	no	no	0.938	0.935	0.347	1e-129
Q9FYC0	770	Cation/H(+) antiporter 12	no	no	0.912	0.966	0.349	1e-123
Q58P69	783	Cation/H(+) antiporter 10	no	no	0.907	0.945	0.335	1e-122
P0CG16	796	Cation/H(+) antiporter 6B	no	no	0.910	0.932	0.344	1e-121
Q9FFB7	800	Cation/H(+) antiporter 9	no	no	0.892	0.908	0.336	1e-120

>sp|Q9FFB8|CHX3_ARATH Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1

 Score =  531 bits (1369), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 304/810 (37%), Positives = 477/810 (58%), Gaps = 57/810 (7%)

Query: 44  MPVPPYVNSNGIW---QFIGKAGN-HPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPM 99
           +P+ P  +SNG+W   +F     N H W+ + P L++  ++   +    HF L+R G+  
Sbjct: 26  LPINP--SSNGVWPQQKFSDPNINVHFWNYAFPHLQMIFLIISFLWQFLHFFLRRLGMIR 83

Query: 100 IASQITGGLILGQAIPGLN----RY-----YKHVLFSDTSLGTLDLVATFGYILFQFLTG 150
             S +  G++L ++    N    R+     YK ++FS        L A   Y++F FL G
Sbjct: 84  FTSHMLTGVLLSKSFLKENSAARRFFSTEDYKEIVFS--------LTAACSYMMFWFLMG 135

Query: 151 VKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMED----KMKLWVVTV 206
           VKMD  +I+ TG+K++  GL ++L+  L+ +       R +G    D     ++  V+  
Sbjct: 136 VKMDTGLIRTTGRKAITIGLSSVLLSTLVCSVIFFGNLRDVGTKNSDHTLNSLEYVVIYS 195

Query: 207 VHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIW----------IA 256
           +  LS FP +  L+ +LR+ NSELGRL +S A++S+    IL    I+          + 
Sbjct: 196 IQCLSSFPVVGNLLFELRLQNSELGRLAISSAVISDFSTSILASVLIFMKELKDEQTRLG 255

Query: 257 SIYHAPLHSAYRNL---GIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLA 313
           S++   + +  R L   GI+V+++   ++V RP M +++KQTP G+PV ++++  II++ 
Sbjct: 256 SVFIGDVIAGNRPLMRAGIVVLFVCIAIYVFRPLMFYIIKQTPSGRPVKAIYLSTIIVMV 315

Query: 314 LGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTN 373
            G+  +++   Q ++ GPF+ GLAVP GPPLGSA+++K +  + G F+P  + S+S   +
Sbjct: 316 SGSAILANWCKQSIFMGPFILGLAVPHGPPLGSAIIQKYESAIFGTFLPFFIASSSTEID 375

Query: 374 LSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEIS 433
           +S   L          +I+    + K   T +P L+  +P  D FAL+LIMS KGI E+ 
Sbjct: 376 IS--ALFGWEGLNGIILIMVTSFVVKFIFTTVPALFYGMPMEDCFALSLIMSFKGIFELG 433

Query: 434 TYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASG 493
            Y ++    S+  + F+   + I + + IIP ++++LYDPSR YAGY+KRN MQH K + 
Sbjct: 434 AYALAYQRGSVRPETFTVACLYITLNSAIIPPILRYLYDPSRMYAGYEKRN-MQHLKPNS 492

Query: 494 ELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTV 553
           ELRIL+CIYR D+I  +I  L+A CP R S V  YVLHL++L G+A P+FISHK+Q +  
Sbjct: 493 ELRILSCIYRTDDISPMINLLEAICPSRESPVATYVLHLMELVGQANPIFISHKLQTRRT 552

Query: 554 SNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHR 613
              SYS NV++SF+ F +  +G+  V  +TA+S P  MH D+CMLAL+   S+++LPFH+
Sbjct: 553 EETSYSNNVLVSFEKFRKDFYGSVFVSTYTALSMPDTMHGDICMLALNNTTSLILLPFHQ 612

Query: 614 KWFIDGS-IESDDNTKRALNCSVLERAPCSVGILIDRGRIGR--------FISSELSLGS 664
            W  DGS + S++N  R LN SVL+ APCSVG+ + R   GR         I+  +   S
Sbjct: 613 TWSADGSALISNNNMIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISSGRKTINGTVPNLS 672

Query: 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTN--WEKVLDSEVL 722
           S+ + MIFLGG DDREA+TLA RM+++  IN+T+ R I  TDE    N  W+K+LD E+L
Sbjct: 673 SYNICMIFLGGKDDREAVTLATRMARDPRINITIVRLIT-TDEKARENTVWDKMLDDELL 731

Query: 723 KEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCR 782
           ++VK  +N    + Y  + + +  ET + ++S+V  +D+ IVGR +   +  T GL+   
Sbjct: 732 RDVK--SNTLVDIFYSEKAIEDAAETSSLLRSMVSDFDMFIVGRGNGRTSVFTEGLEEWS 789

Query: 783 EFPELGIVGNCLVTEDLPGRYSVLVVQQQQ 812
           EF ELGI+G+ L ++D   + SVLV+QQQQ
Sbjct: 790 EFKELGIIGDLLTSQDFNCQASVLVIQQQQ 819

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYC1|CHX4_ARATH Cation/H(+) antiporter 4 OS=Arabidopsis thaliana GN=CHX4 PE=2 SV=1

 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 296/798 (37%), Positives = 477/798 (59%), Gaps = 31/798 (3%)

Query: 44  MPVPPYVNSNGIWQFIG----KAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPM 99
           +P+ P  +S+G+W        +A    W+   P +++  ++   +    HF L+R G+  
Sbjct: 25  LPINP--SSSGLWPSPKLPDPQANIEFWNYMFPHVQIIFLIVTILWQFFHFFLRRLGMIR 82

Query: 100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTL-DLVATFGYILFQFLTGVKMDVSMI 158
             S +  G++L ++    N   +  L ++    TL  LV    Y++F FL GVKMD+S+I
Sbjct: 83  FTSHMLTGILLSKSFLKENTPARKFLSTEDYKETLFGLVGACSYMMFWFLMGVKMDLSLI 142

Query: 159 QKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKM----KLWVVTVVHSLSRFP 214
           + TG+K++  GL ++L+   + A     + R +G    + +    ++  + ++  LS FP
Sbjct: 143 RSTGRKAVAIGLSSVLLSITVCALIFFLILRDVGTKKGEPVMSFFEIIFIYLIQCLSSFP 202

Query: 215 SIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIY--HAPLHSAY----- 267
            I  L+ +LR+ NSELGRL +S A++S+    IL+   +++  +    + L S +     
Sbjct: 203 VIGNLLFELRLQNSELGRLAMSSAVISDFSTSILSAVLVFLKELKDDKSRLGSVFIGDVI 262

Query: 268 ------RNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISD 321
                 +  G +V+++   +++ RP M +++K+TP G+PV   +I+ II+L  G+  ++D
Sbjct: 263 VGNRPMKRAGTVVLFVCFAIYIFRPLMFFIIKRTPSGRPVKKFYIYAIIILVFGSAILAD 322

Query: 322 LFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD 381
              Q ++ GPF+ GLAVP GPPLGSA+++K + +V G F+P  V +++   + S ++   
Sbjct: 323 WCKQSIFIGPFILGLAVPHGPPLGSAILQKFESVVFGTFLPFFVATSAEEIDTSILQSWI 382

Query: 382 DNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNI 441
           D   KS  ++V+V  + K A T +P     +P +D  AL+LIMS KGI E   Y  +   
Sbjct: 383 D--LKSIVILVSVSFIVKFALTTLPAFLYGMPAKDCIALSLIMSFKGIFEFGAYGYAYQR 440

Query: 442 ESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACI 501
            ++    F+ L++ IL+ + +IP L+K +YDPSR YAGY+KRN M H K + ELRIL+CI
Sbjct: 441 GTIRPVTFTVLSLYILLNSAVIPPLLKRIYDPSRMYAGYEKRN-MLHMKPNSELRILSCI 499

Query: 502 YRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSY-SE 560
           Y+ D+I  +I  L+A+CP R + V  YVLHL++L G+A P+ ISH++Q +   N SY SE
Sbjct: 500 YKTDDIRPMINLLEATCPSRENPVATYVLHLMELVGQANPVLISHRLQTRKSENMSYNSE 559

Query: 561 NVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGS 620
           NV++SF+ F    +G+  V  +TA+S PK+MH D+CMLAL+   S+++LPFH+ W  DGS
Sbjct: 560 NVVVSFEQFHNDFFGSVFVSTYTALSVPKMMHGDICMLALNNTTSLIILPFHQTWSADGS 619

Query: 621 -IESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLG-SSFRVAMIFLGGSDD 678
            I SD    R LN SVL+ +PCSVGI + R   GR    E +   SS++V M+FLGG DD
Sbjct: 620 AIVSDSLMIRQLNKSVLDLSPCSVGIFVYRSSNGRRTIKETAANFSSYQVCMLFLGGKDD 679

Query: 679 REALTLAKRMSQNTSINLTVFRFIVKTDEM-ISTNWEKVLDSEVLKEVKPENNFNQRVKY 737
           REAL+LAKRM++++ I +TV   I        +T+W+++LD E+L++VK        + +
Sbjct: 680 REALSLAKRMARDSRITITVVSLISSEQRANQATDWDRMLDLELLRDVKSNVLAGADIVF 739

Query: 738 VVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTE 797
             E+VN+  +T   ++S+  +YDL IVGR    ++  T GL+   EF ELGI+G+ L ++
Sbjct: 740 SEEVVNDANQTSQLLKSIANEYDLFIVGREKGRKSVFTEGLEEWSEFEELGIIGDLLTSQ 799

Query: 798 DLPGRYSVLVVQQQQTTV 815
           DL  + SVLV+QQQQ  +
Sbjct: 800 DLNCQASVLVIQQQQQMI 817

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDG3|CHX5_ARATH Cation/H(+) antiporter 5 OS=Arabidopsis thaliana GN=CHX5 PE=2 SV=1

 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 299/799 (37%), Positives = 463/799 (57%), Gaps = 47/799 (5%)

Query: 34  QGYNLS---SRFCMPVPPYVNSNGIWQFIGKA--GNHPWDASLPRLELQIIVAFAVTHAC 88
            GY  S   S+FC  +P  VNS G+W+ +     G   WD SLP LE  I++   +    
Sbjct: 23  HGYGFSEDGSKFCEQIPILVNSFGVWEKLDLPIRGMKIWDYSLPHLESVIVLVLCLWQFF 82

Query: 89  HFVLKRFGIPMIASQITGGLILGQAIPGLN-----RYYKHVLF-SDTSLGTLDLVATFGY 142
           +  LK+ G+P+   +IT  +I G A+   N        +H+LF  DT     + +  F +
Sbjct: 83  YLSLKKIGLPV--PKITSMMIAGAALSQTNLLPNDWTIQHILFPDDTRPKVPETLGGFAF 140

Query: 143 ILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILG---IGMEDKM 199
           + + F+ GVKMDV M++KTG K + TG+ T+++P +       K+    G    GME + 
Sbjct: 141 VFYWFIEGVKMDVGMVRKTGTKVIVTGIATVILPIIAANMVFGKLRETGGKYLTGMEYRT 200

Query: 200 KLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIY 259
            L++     S+S F  I+ L+ DLRI +SE GR+ +S A+V++  G  +   A+     +
Sbjct: 201 ILFM----QSISAFTGISRLLRDLRINHSEFGRIVISTAMVADGTGFGVNLFALVAWMDW 256

Query: 260 HAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYI 319
                SA + +GI + Y++ +V+VVRPAM WV+K+TP+ +PV    I+ I++LA G  Y 
Sbjct: 257 RV---SALQGVGI-IGYVIFMVWVVRPAMFWVIKRTPQERPVKECFIYIILILAFGGYYF 312

Query: 320 SDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTN------ 373
                     GPF+ GL VP GPPLGS LVEK +   +G+ +PL +  + ++ +      
Sbjct: 313 LKEIHMFPAVGPFLLGLCVPHGPPLGSQLVEKFESFNTGILLPLFLFFSMLQIDGPWLAN 372

Query: 374 -LSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEI 432
            +  ++  D  L ++  +I+ VV +AK+  +MIP L  K+P  D+F +ALI+S KGIVE+
Sbjct: 373 QIGQLRHFDGQLYEALTIII-VVFVAKIIFSMIPALLAKMPLTDSFVMALILSNKGIVEL 431

Query: 433 ST--YNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSK 490
               Y +  N+  L  + F+ +   ILV++ I P+L+ +LYD S+++  +QKRN+M   K
Sbjct: 432 CYFLYGVESNV--LHVKSFTIMATMILVSSTISPVLIHYLYDSSKRFISFQKRNLMS-LK 488

Query: 491 ASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQK 550
              EL+ L CI++ D+I  +I  L  S P   S ++ YV+HL++L G   P+FISH+MQK
Sbjct: 489 LGSELKFLVCIHKADHISGMINLLAQSFPLHESTISCYVIHLVELVGLDNPVFISHQMQK 548

Query: 551 KTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLP 610
               NRSYS NV+++F  F+   W +  +  FT IS P+ MH+++  LALDK AS ++LP
Sbjct: 549 AEPGNRSYSNNVLIAFDNFKHY-WKSISLELFTCISNPRYMHQEIYSLALDKQASFLMLP 607

Query: 611 FHRKWFID-GSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVA 669
           FH  W +D  ++ SDD  +R  N +VL +APCSVGI + R ++   +S++ S   SF V 
Sbjct: 608 FHIIWSLDQTTVVSDDVMRRNANLNVLRQAPCSVGIFVHRQKL---LSAQKS-SPSFEVC 663

Query: 670 MIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPEN 729
            IF+GG DDREAL L ++M +N ++NLTV + I    + ++T W+++LDS  +KEV   N
Sbjct: 664 AIFVGGKDDREALALGRQMMRNPNVNLTVLKLIPAKMDGMTTGWDQMLDSAEVKEVLRNN 723

Query: 730 NF----NQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFP 785
           N     +  V+YV E VN+G +T   + S+   +DL +VGR     T   S L    EF 
Sbjct: 724 NNTVGQHSFVEYVEETVNDGSDTSTLLLSIANSFDLFVVGRSAGVGTDVVSALSEWTEFD 783

Query: 786 ELGIVGNCLVTEDLPGRYS 804
           ELG++G+ LV++D P R S
Sbjct: 784 ELGVIGDLLVSQDFPRRGS 802

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1

 Score =  486 bits (1252), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 295/795 (37%), Positives = 470/795 (59%), Gaps = 55/795 (6%)

Query: 47  PPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITG 106
           P  + +NG+WQ     G++P D SLP   LQ+ +   VT    F+LK F  P + S+I G
Sbjct: 18  PSMITTNGVWQ-----GDNPLDFSLPLFVLQLTLVVVVTRFFVFILKPFRQPRVISEILG 72

Query: 107 GLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSL 166
           G++LG ++ G +  + H +F   S+  L+ +A  G + F FL GV+MD+ +++KTGK++L
Sbjct: 73  GIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMDIMVVRKTGKRAL 132

Query: 167 FTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMK----LWVVTVVHSLSRFPSIACLVSD 222
              +  +++PFL+GAA    M R      ED +     +  + V  S++ FP +A ++++
Sbjct: 133 TIAIGGMVLPFLIGAAFSFSMHR-----SEDHLGQGTYILFLGVALSVTAFPVLARILAE 187

Query: 223 LRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMV---VYLLA 279
           L++IN+E+GR+ +S ALV++M   IL   AI +A        +++ +L +M+   V++  
Sbjct: 188 LKLINTEIGRISMSAALVNDMFAWILLALAIALAE----SDKTSFASLWVMISSAVFIAV 243

Query: 280 VVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVP 339
            VFVVRP + W++++TPEG+  +  HI  I+   + +G+I+D  G H  FG FVFGL +P
Sbjct: 244 CVFVVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFVFGLVIP 303

Query: 340 AGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAK 399
            G PLG  L+EKL+  VSGL +PL    + ++TN++ I+     L     + +A     K
Sbjct: 304 NG-PLGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACA--GK 360

Query: 400 VATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLT-VEILV 458
           V  T+I   +  +P R+   L L+++TKG+VE+   N+ ++ + L D+ F+ +  V +++
Sbjct: 361 VIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVALVM 420

Query: 459 TAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASC 518
           T +I PI V  LY P +K   Y++R I Q +K   ELR+L C++ P N+P II  L+AS 
Sbjct: 421 TGVITPI-VTILYKPVKKSVSYKRRTI-QQTKPDSELRVLVCVHTPRNVPTIINLLEASH 478

Query: 519 PKRGSLVTVYVLHLIDLRGRAAPLFISHKMQK--KTVSNRS--YSENVILSFKLFEEKNW 574
           P + S + +YVLHL++L GRA+ + I H  +K  +   NR+   S+++I +F+ +E+   
Sbjct: 479 PTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAA 538

Query: 575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCS 634
             A V P TAISP   MHEDVC LA DK  S +++PFH++  +DG +ES +   R +N +
Sbjct: 539 FVA-VQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQN 597

Query: 635 VLERAPCSVGILIDRGRIG--RFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNT 692
           +LE +PCSVGIL+DRG  G  R  S+ +SL    +VA++F GG DDREAL  A RM+Q+ 
Sbjct: 598 LLENSPCSVGILVDRGLNGATRLNSNTVSL----QVAVLFFGGPDDREALAYAWRMAQHP 653

Query: 693 SINLTVFRFIVKTDEMISTNW-----------------EKVLDSEVLKEVKPENNFNQRV 735
            I LTV RFI   DE  + +                  ++ LD + +   + EN   + +
Sbjct: 654 GITLTVLRFIHDEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAENAEYESI 713

Query: 736 KYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLV 795
            Y+ ++V+ G+ET+A ++S+   +DL IVGR +   +P T+GL    E PELG +G+ L 
Sbjct: 714 VYIEKLVSNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPELGAIGDLLA 773

Query: 796 TEDLPGRYSVLVVQQ 810
           + D     SVLVVQQ
Sbjct: 774 SSDFAATVSVLVVQQ 788

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58P71|CHX8_ARATH Cation/H(+) antiporter 8 OS=Arabidopsis thaliana GN=CHX8 PE=2 SV=1

 Score =  485 bits (1248), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 295/793 (37%), Positives = 457/793 (57%), Gaps = 36/793 (4%)

Query: 43  CMPVPPYVNSNGIWQ--FIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFG--IP 98
           C   PP ++S+GIW+   I  AG + W   LP+LE+ I++ F +    + + K+ G  IP
Sbjct: 33  CEEHPPKLSSDGIWEKLIIKSAGLYFWQYRLPKLEIVILLVFFLWQGFNILFKKLGLSIP 92

Query: 99  MIASQITGGLILGQ--AIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVS 156
            ++S +  GL+L     + G N     +L +   +     + +FG+++F FL GV+MDV 
Sbjct: 93  KLSSMMLAGLLLNVLVTLSGENSIIADILVTKNRIDVAGCLGSFGFLIFWFLKGVRMDVK 152

Query: 157 MIQKTGKKSLFTGLLTLLIPFLLGAAALEKMS---RILGIGMEDKMKLWVVTVVHSLSRF 213
            I K   K+  TG+  +  P ++G       S   R L     D M L     + S++ F
Sbjct: 153 RIFKAEAKARVTGVAAVTFPIVVGFLLFNLKSAKNRPLTFQEYDVMLL-----MESITSF 207

Query: 214 PSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIM 273
             IA L+ DL + +S +GR+ LS ALVS+++GL+L  + +  +S   A L      L  +
Sbjct: 208 SGIARLLRDLGMNHSSIGRVALSSALVSDIVGLLLLIANVSRSS---ATLADGLAILTEI 264

Query: 274 VVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIML-ALGAGYISDLFGQHVYFGPF 332
            ++L+    VVRP M  ++K+  EG+P+   +IH +++L  L   Y  DL  Q    G F
Sbjct: 265 TLFLVIAFAVVRPIMFKIIKRKGEGRPIEDKYIHGVLVLVCLSCMYWEDL-SQFPPLGAF 323

Query: 333 VFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIK-----LLDDNLAKS 387
             GLA+P GPP+GSALVE+L+    G+ +PL +T+  +RT+ +  K        D+   +
Sbjct: 324 FLGLAIPNGPPIGSALVERLESFNFGIILPLFLTAVMLRTDTTAWKGALTFFSGDDKKFA 383

Query: 388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ 447
            A +V ++ L K++ ++I P   K+P RD+  LALIMS KGI+E+S Y  S +++ +T  
Sbjct: 384 VASLVLLIFLLKLSVSVIVPYLYKMPLRDSIILALIMSHKGIIELSFYLFSLSLKLVTKD 443

Query: 448 MFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNI 507
            FS L + I++ +++IP+ + FLYDPS+++  YQKRN +   K  GEL+ L CI+RPD+I
Sbjct: 444 TFSILVLSIVLNSLLIPMAIGFLYDPSKQFICYQKRN-LASMKNMGELKTLVCIHRPDHI 502

Query: 508 PAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTV-SNRSYSENVILSF 566
            ++I  L+AS     S +T YVLHL++LRG+  P  ISHK+QK  V +   YSENVILSF
Sbjct: 503 SSMINLLEASYQSEDSPLTCYVLHLVELRGQDVPTLISHKVQKLGVGAGNKYSENVILSF 562

Query: 567 KLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFID-GSIESDD 625
           + F      +  +  FT I+    M +D+C LALDK  ++++LPFHR W +D  SI SD 
Sbjct: 563 EHFHRSVCSSISIDTFTCIANANHMQDDICWLALDKAVTLIILPFHRTWSLDRTSIVSDV 622

Query: 626 NTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLA 685
              R LN +VL++APCSVGILI+R      ++ +     S +V +IF+GG DDREAL  A
Sbjct: 623 EAIRFLNVNVLKQAPCSVGILIER----HLVNKKQEPHESLKVCVIFVGGKDDREALAFA 678

Query: 686 KRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNF-----NQRVKYVVE 740
           KRM++  ++ LTV R +       +T W+++LD+  L+E+   NN           Y+ +
Sbjct: 679 KRMARQENVTLTVLRLLASGKSKDATGWDQMLDTVELRELIKSNNAGMVKEETSTIYLEQ 738

Query: 741 MVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLP 800
            + +G +T   ++S+   YDL +VGR        T G++   EF ELG++G+ L + D P
Sbjct: 739 EILDGADTSMLLRSMAFDYDLFVVGRTCGENHEATKGIENWCEFEELGVIGDFLASPDFP 798

Query: 801 GRYSVLVVQQQQT 813
            + SVLVVQQQ+T
Sbjct: 799 SKTSVLVVQQQRT 811

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GX92|CHX6A_ARATH Cation/H(+) antiporter 6A OS=Arabidopsis thaliana GN=CHX6a PE=2 SV=2

 Score =  462 bits (1190), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 280/806 (34%), Positives = 446/806 (55%), Gaps = 41/806 (5%)

Query: 30  GSENQGYNLSSRFCMPVPPYVNSNGIWQFIG-KAGNHPWDASLPRLELQIIVAFAVTHAC 88
           G  N+  N SS FC   P  VNS+GIW+ +  K G + W+  LP LE+ I   F +    
Sbjct: 16  GEFNEDKN-SSIFCESHPHIVNSHGIWEVMTFKRGMNFWEYPLPNLEILIFSTFFIWRLL 74

Query: 89  HFVLKRFG--IPMIASQITGGLILGQAIPGLNRYYKHVLF--SDTSLGTLDLVATFGYIL 144
                + G  +P     +  G+ILGQ     N+ + H +F   D      + +  FG++L
Sbjct: 75  DISFNKIGLRVPRFTYMMIAGIILGQTCHFSNKSWIHDIFFPDDNRPKVAETLGAFGFVL 134

Query: 145 FQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVV 204
           + FL GV MD  +  +T K+S   G +T++IP + G+       R  G     +M+  ++
Sbjct: 135 YWFLKGVTMDAELPFRTEKRSSVIGFITVIIPLICGSLTFRYRER-RGDSSILRMEYRLI 193

Query: 205 TVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLH 264
             + S+S F SI  L+ DL+I +SE GR+ LS A+V++M+   +T    +  +IY+  L+
Sbjct: 194 IFLQSISAFTSIDTLLKDLQIKHSEFGRIALSGAMVTDMLAFGVT----FFNAIYYEKLY 249

Query: 265 SAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGA----GYIS 320
              + +G   ++++ ++ VVRPAM WV+KQTPEG+PV   ++++I  +A         + 
Sbjct: 250 GFMQTVG-FCLFVVVMICVVRPAMYWVIKQTPEGRPVKDFYLYSIFGIAFACFTFFNKVI 308

Query: 321 DLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL 380
            LFG     G FVFGL VP G PLG+ L++K +    G  +PL  +   M+ +L  +   
Sbjct: 309 HLFGPA---GSFVFGLTVPNGYPLGTTLIQKFESFNLGSILPLFGSLTMMQVDLLRLFKE 365

Query: 381 DDNLAKSTAVIVAVVVL------AKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEIST 434
             +L +    I  V+         K   T I     K+P RD+FALAL++S KGI E++ 
Sbjct: 366 SGDLIRMEGQIYEVISFILLVNTTKFVVTTITAYAFKMPLRDSFALALVLSNKGIFELAY 425

Query: 435 YNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGE 494
           Y  +  ++ +  ++F+ L    L+ +I IP+L++ ++DP++++  Y+KRN +   K    
Sbjct: 426 YTYAVELKLIRPEVFTILAAYTLLNSIFIPMLLELVHDPTKRFRCYRKRN-LGILKDGAA 484

Query: 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVS 554
           L+ L C+YRPD+I ++   L+   P + S +   +LHL++L G+A P+FISH++QK    
Sbjct: 485 LQCLMCVYRPDHITSMTDLLETFSPSQDSPMACNILHLVELVGQANPMFISHQLQKPEPG 544

Query: 555 NRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRK 614
           + S S+NVI+SF+ F+ + +    +  FT++S  + MHED+C LAL +  S++VLPFHR 
Sbjct: 545 STSLSDNVIISFRGFQRQFFEYTSLDIFTSVSVSQHMHEDICWLALSRSLSLIVLPFHRT 604

Query: 615 WFIDGS-IESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFL 673
           W +D S + S+D+  R LN +VL RAPCSVGI + R  I   + S ++   S ++ +IF 
Sbjct: 605 WSVDRSTVISNDDNLRMLNVNVLRRAPCSVGIFVYRKPI---VESHMAKSHS-KICLIFN 660

Query: 674 GGSDDREALTLAKRMS-QNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKP----- 727
           GG DDREAL +  RM        LT+ RFI K+ EM +  WE+     + + V       
Sbjct: 661 GGKDDREALAITNRMRLTEKRTRLTIIRFIPKSSEMDNDEWEQQQSINLKESVTSIVGSN 720

Query: 728 --ENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFP 785
             EN  + +V Y+ + V++G ET   ++++   YDL IVG      T  TSG+    EF 
Sbjct: 721 IKEN--DAKVTYIDKAVSDGSETSRILRAMANDYDLFIVGSGSGIGTEATSGISEWTEFN 778

Query: 786 ELGIVGNCLVTEDLPGRYSVLVVQQQ 811
           ELG +G+ L + + P   SVLVVQ+Q
Sbjct: 779 ELGPIGDLLASHEYPSSASVLVVQKQ 804

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYC0|CHX12_ARATH Cation/H(+) antiporter 12 OS=Arabidopsis thaliana GN=CHX12 PE=2 SV=2

 Score =  443 bits (1140), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/769 (34%), Positives = 427/769 (55%), Gaps = 25/769 (3%)

Query: 41  RFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMI 100
           R C+P+   ++S G W+ + K+ +  +  SLP +E QI++ F      H  LK FGI  I
Sbjct: 8   RGCIPLVFNISSFGFWENL-KSPDVIFGYSLPLMEFQILLIFVFIIIIHSFLKSFGISPI 66

Query: 101 ASQITGGLILGQAIPGLNRYYKHVLFSDTSL---GTLDLVATFGYILFQFLTGVKMDVSM 157
            S +  GLILG  +  L       L  D +L   G L  ++  G I+  F   VK+   +
Sbjct: 67  PSYMLAGLILGPQLFNLREVSSRKLSWDPALDGNGPLRGLSVCGNIMLAFFMTVKISRRL 126

Query: 158 IQKTGKKSLFTGLLTLLIPFLLGAAALE-KMSRILGIGME-DKMKLWVVTVVHSLSR--F 213
               G   +  G L+ ++PFL G          I    M  +K+    + V+ S S    
Sbjct: 127 AFNNGWLPIVIGTLSFIVPFLGGFCVRNLHTDNIDPYYMSPNKVLAERIVVISSQSSILL 186

Query: 214 PSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIM 273
           P++   +S+L+I+NSELGRL LS +L++++    ++  A  + +  +    +AYR+L  +
Sbjct: 187 PTVVHFLSELKILNSELGRLVLSASLINDIFASTVSIFAYLVGTYKNISPMTAYRDLIAV 246

Query: 274 VVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFV 333
           ++ +L    V+RP + W+V++TPEGKPV  +++H +++  + +   S  F      GPF+
Sbjct: 247 IILILVAFCVLRPVVEWIVERTPEGKPVADVYVHAVVLSVIASAAYSSFFNMKYLLGPFL 306

Query: 334 FGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVA 393
            G+ +P GPP+GSAL  K + +   + IP+ +T ++MR ++  I    D++  +  ++  
Sbjct: 307 LGIIIPEGPPIGSALEAKYEALTMNVLIPISITFSTMRCDVMKIVYQYDDIWYNIFLMTF 366

Query: 394 VVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLT 453
              L K+AT M+P LYCK+P ++A A +L++ +K   EI  Y  + +   ++   ++FL 
Sbjct: 367 TGFL-KMATGMVPCLYCKIPFKEAIAASLLLCSKSFSEIFLYESTYDDSYISQATYTFLI 425

Query: 454 VEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKF 513
              L+ + IIP  +  LYDP RKY GYQK+NIM + K   +LRIL CI+RP+NI A I F
Sbjct: 426 TCALINSGIIPTALAGLYDPKRKYVGYQKKNIM-NLKPDSDLRILTCIHRPENISAAISF 484

Query: 514 LQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN 573
           LQ       S + V VLHL+ L G+  P+ ISH  Q   V   SY     L+F   E   
Sbjct: 485 LQF----LPSTIVVTVLHLVKLVGKTVPVLISHNKQINRVVTNSYIHTANLAFSQLE--- 537

Query: 574 WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNC 633
             +  +  FTAI+   LMH+++C +AL++  SI+++P  RKW +DG+ ES+D   R LN 
Sbjct: 538 --SVTMTMFTAITHENLMHDEICKVALEQATSIIIVPSGRKWTVDGAFESEDEAIRRLNE 595

Query: 634 SVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTS 693
           S+L+ A CS+GIL+DRG++    + + ++     V +IF+GG DDREAL+L K+M QN  
Sbjct: 596 SLLKSASCSIGILVDRGQLSLKGTRKFNID----VGVIFIGGKDDREALSLVKKMKQNPR 651

Query: 694 INLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQ 753
           + +TV R I    E  STNW+ +LD EVL+++K     N  + Y   +V  G E    ++
Sbjct: 652 VKITVIRLI-SDRETESTNWDYILDHEVLEDLKDTEATNS-IAYTERIVTGGPEVATTVR 709

Query: 754 SVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGR 802
           S+   YDL++VGR     +P   GL    E PELG++G+ L + +L  R
Sbjct: 710 SLSEDYDLMVVGRDHGMASPDFDGLMEWVELPELGVIGDLLASRELDSR 758

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58P69|CHX10_ARATH Cation/H(+) antiporter 10 OS=Arabidopsis thaliana GN=CHX10 PE=2 SV=2

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/767 (33%), Positives = 418/767 (54%), Gaps = 27/767 (3%)

Query: 50  VNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLI 109
           ++S G W  + K+ +  +  SLP LE+QII+ F      H  L+  GI  IAS +  G++
Sbjct: 17  ISSQGFWDNL-KSPDVVFGYSLPLLEIQIILIFFCIVMSHMFLRCIGISQIASYMIAGIV 75

Query: 110 LGQAIPGLNRYYKHVLFSDTSL---GTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSL 166
           LG  +  +       L  D +L     L  ++ FG ++F FL  V+    +   +GK  +
Sbjct: 76  LGPQLFDVLEKSSGKLSVDPALDGIAALRCISVFGTLMFTFLMTVRTSRRVAFHSGKLPV 135

Query: 167 FTGLLTLLIP-FLLGAAALEK---------MSRILGIGMEDKMKLWVVTVVHSLSRFPSI 216
             G+++   P F LG               +++ LG       +   + +  S    PS 
Sbjct: 136 VIGIVSFFAPLFGLGFQNFFSDNIDPHYMPLTKALG-------ERTAIVITQSSILLPST 188

Query: 217 ACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVY 276
             ++ +L+IINSELGRL LS  ++++++G+     A   A+  H    +AYR+   ++++
Sbjct: 189 TYILLELKIINSELGRLALSACVINDILGIFSMIVASIQATYIHVSHATAYRDTVAVIIF 248

Query: 277 LLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGL 336
            L V  V +P + WV+ +TPE KPV  ++IH +I+ AL +      F      GP + G+
Sbjct: 249 FLVVFLVFKPMVQWVIDRTPEDKPVEDMYIHAVIITALASAAYFVFFNMKYILGPLMIGI 308

Query: 337 AVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVV 396
            +P GPPLGSAL  K + +   +F+P+ +T ++MR + + I L   N       +  +++
Sbjct: 309 IIPEGPPLGSALEAKFERLTMNVFLPISITFSAMRCDGARI-LSQFNDIFFNIFLTFLIL 367

Query: 397 LAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEI 456
           + K+   + P LY K+P  ++ A++ I+S K   +   Y    +   ++   +SFL +  
Sbjct: 368 VIKLVACLAPCLYYKLPLSESLAVSFILSYKSFADFVLYEAVLDDTYISQATYSFLILYS 427

Query: 457 LVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQA 516
           L+ A I+P +++ +YDP RKY  YQKR+I+ H + + +LRIL C+++P+N+   I FLQ 
Sbjct: 428 LLNAGIVPTVLRRMYDPRRKYVNYQKRDIL-HLERNSDLRILTCLHKPENVSETIAFLQL 486

Query: 517 -SCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575
            S P     + V VLHL+ L G+  P+ +SH  + K ++  SY     L+F+ F  ++  
Sbjct: 487 LSSPNLDFPIAVTVLHLVKLVGQINPIIVSHDKKLKRLNKDSYIHTANLAFRQFVLESLE 546

Query: 576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSV 635
           +  V  FTA S   LMHED+C LALDK  S++V+P  RKW +DG  ESD+   R LN S+
Sbjct: 547 SVTVTTFTAFSHENLMHEDICTLALDKTTSMIVVPSGRKWTVDGLFESDNTAIRHLNQSL 606

Query: 636 LERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSIN 695
           L+RAPCS+GIL+DRG+  R             V ++F+GG DDREAL+L KRM  N  I 
Sbjct: 607 LDRAPCSIGILVDRGQFSRKSIVTSKKRYIIDVGVLFIGGKDDREALSLVKRMKNNPRIR 666

Query: 696 LTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSV 755
           +TV R +   D  I ++W+ +LD+E LK++K   + N+ + Y+  +V    E +  +Q +
Sbjct: 667 VTVIRLVF--DHEIESDWDYILDNEGLKDLKSTED-NKDIDYIERIVTSSVEVVKAVQLL 723

Query: 756 VPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGR 802
             +YDL++VGR  +  +   SGL    E PELG++G+ L   DL  +
Sbjct: 724 AEEYDLMVVGRDHDMTSQDLSGLMEWVELPELGVIGDLLAARDLSSK 770

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CG16|CHX6B_ARATH Cation/H(+) antiporter 6B OS=Arabidopsis thaliana GN=CHX6b PE=2 SV=1

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 275/798 (34%), Positives = 448/798 (56%), Gaps = 56/798 (7%)

Query: 42  FCMPVPPYV--NSNGIWQFI--GKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGI 97
           FC  V P++  NS+G+ + +  G  G   W+  LP+LE+ I+  F +      + K+ G+
Sbjct: 28  FC-DVSPHIMLNSHGVAEKMASGSKGMDFWEYPLPQLEIIILSIFLLWRLFDMLFKKLGV 86

Query: 98  PM--IASQITGGLILGQ-----AIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTG 150
           P+    S +  G +L +      IP L   + H  ++       D +  F ++L  FL G
Sbjct: 87  PIPKFTSMMLVGAVLSEMFGSMQIPCLKHIFIH--YNQYMTKVPDTIGAFAFVLDWFLRG 144

Query: 151 VKMDVSMIQKTGKKSLFTGLLTLLIPFLLGA---AALEKMSRILGIGMEDKMKLWVVTVV 207
           V  DV +++K+G KS+  G+ +++IP+ +G    ++ EK S IL +    +M+  V+T  
Sbjct: 145 VTTDVGIMKKSGTKSVVIGITSMIIPWQIGKLLYSSREK-SSILTM---TEMEYTVMTFT 200

Query: 208 HSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAY 267
            S++ F  +  L++DL+I++++ G++  S  +V++++   LT SA      Y +   +  
Sbjct: 201 MSMTPFTCVNMLLTDLKIVHTDFGQIAQSAGMVTDLLAFFLTVSA------YVSRDETQG 254

Query: 268 RNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHV 327
             +G+  +     V++VR  MLWV++ TPEG PV +++++   +  L A      + + +
Sbjct: 255 VKMGLAFMAFFIFVYLVRQFMLWVIRHTPEGAPVKNVYLY---IGLLLAYLSYLYWSRFL 311

Query: 328 YFGP---FVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLV-------VTSASMRTNLSDI 377
           +FGP   F  GLAVP GPPLGS  ++K D    G+F+PL        +  + +R    + 
Sbjct: 312 FFGPLGAFALGLAVPNGPPLGSVFIQKFDSFNEGIFLPLFGSLSMIKLDWSFLRKEFGNG 371

Query: 378 KLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNI 437
           + L  ++ +  + +  +V +AK AT+ +  L  K+P RD+  L +IM TK   E+     
Sbjct: 372 RHLHGHMYECFSFL-PIVYIAKFATSFLAALATKIPLRDSIILGVIMGTKSSFELGYVLT 430

Query: 438 SRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRI 497
           +   + ++ ++ S L V ILV +++ P+ + FLYD S+++  Y +RN+    K   E++ 
Sbjct: 431 AFEKDRISLEVLSLLGVYILVNSLLTPMAIHFLYDRSKRFVCYGRRNL----KEKPEMQT 486

Query: 498 LACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRS 557
           L CI +PDNI ++I  L+A+ P + S +   VLHLI+L G+A P FISH++QK    +RS
Sbjct: 487 LVCINKPDNITSMISLLRATSPSKDSPMECCVLHLIELLGQATPTFISHQLQKPKPGSRS 546

Query: 558 YSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFI 617
           YSENVI SF+LF+E  W +A +  FT+++  K MHE +C  AL + +++++L FHR W  
Sbjct: 547 YSENVISSFQLFQEVYWDSASINMFTSLTSAKEMHEQICWFALSQGSNLILLSFHRTWEP 606

Query: 618 DGS-IESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGS 676
           +G+ I SDD T R+LN +VL+RAPCSVGI + R  I +      +L S  RV +I++GG+
Sbjct: 607 NGNVIISDDQTLRSLNLNVLKRAPCSVGIFVYRKPIWQ----TKALESPCRVCLIYVGGN 662

Query: 677 DDREALTLAKRMSQNTSINLTVFRFIVKT--DEMISTNWEKVLDSEVLKEVKPENNFNQR 734
           DD+EAL LA  M  N  + LTV R I  +  DE       +++D    ++ +P      +
Sbjct: 663 DDKEALALADHMRGNQQVILTVLRLIPTSYADESSLRIHSQMVDMNRHEDQRP----GDK 718

Query: 735 VKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCL 794
              +   V +G ET   + SV   YDL IVGRR    T  T GL    EF ELG++G+ L
Sbjct: 719 STIIDWTVGDGTETSKILHSVSYDYDLFIVGRRSGVGTTVTRGLGDWMEFEELGVIGDLL 778

Query: 795 VTEDLPGRYSVLVVQQQQ 812
            +E  P R SVLVVQQQ+
Sbjct: 779 ASEYFPSRASVLVVQQQE 796

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFB7|CHX9_ARATH Cation/H(+) antiporter 9 OS=Arabidopsis thaliana GN=CHX9 PE=2 SV=1

 Score =  432 bits (1110), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/746 (33%), Positives = 418/746 (56%), Gaps = 19/746 (2%)

Query: 70  SLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDT 129
           +LP LELQII+ F      H  L+R GIP   S I  GLILG  +  L  Y    L  D 
Sbjct: 48  ALPLLELQIILIFVCIVLSHMFLRRIGIPRFVSNILAGLILGPQLLDLLEYSSDRLSLDI 107

Query: 130 SLG-TLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALE-KM 187
                L+ VA  G ++F FL GVK +   + + GK+ +   + +  +  + G A    ++
Sbjct: 108 PGNVALEGVARLGLVMFTFLMGVKTNKRAVYQIGKRPIVIAVSSFFVTMISGLAFRNFRL 167

Query: 188 SRILGIGMEDKM---KLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMI 244
            ++  + M  ++   +  V+  + +++  P I  LV +L++ NSELGR+ +S A VS+ +
Sbjct: 168 DKVDPLYMPLRLAPTERSVIVSIQAVTLLPVITHLVYELKMSNSELGRIAISTAAVSDFL 227

Query: 245 GLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSL 304
           G +      ++ +  +     A R++  +++ +L ++F+ +P    +V  TPEGKPV  +
Sbjct: 228 GFLTLVCISYVGTYRYVSPGIANRDIVALIILVLVILFIFKPMAQRIVDMTPEGKPVPKV 287

Query: 305 HIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLV 364
           +++  I+ A+ A     +F Q    G  + GLA+P GPPLGSAL  + + +V+ +F P+ 
Sbjct: 288 YLYVTILTAIAASIYLSVFNQMYILGALLVGLAIPDGPPLGSALEARFESLVTNIFFPIS 347

Query: 365 VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL-YCKVPKRDAFALALI 423
           +   +M+ ++       D+++ +  +++ + V+ K   + +P L +C++P R++  +A I
Sbjct: 348 IAVMAMKADVVRALYSFDDISFNI-LLLGLTVVVKWTASFVPCLIFCELPTRESVIIATI 406

Query: 424 MSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKR 483
           M+ KG V++  ++++    +L+   ++ + + +L+ A I+P ++K LYDP RKY GY KR
Sbjct: 407 MNYKGFVDLCFFDVALRRRNLSRATYTVMIIYVLLNAGILPTIIKALYDPKRKYIGYVKR 466

Query: 484 NIMQHSKASGELRILACIYRPDNIPAIIKFLQASCP------KRGSLVTVYVLHLIDLRG 537
           +IM H K + +L+IL C+++PDNI   I  L+          K   ++ V  LHL+ L G
Sbjct: 467 DIM-HLKTNSDLKILTCLHKPDNISGAISLLELLSSPLNNDNKDRGVIAVTALHLVKLAG 525

Query: 538 RAAPLFISH-KMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVC 596
           R  P+ I H K  K  +   SY + ++L+F  F+++NW +  V  FTA S   LM +D+C
Sbjct: 526 RTFPILIPHDKRSKARLLQNSYIQTMMLAFTEFQQENWESTTVSSFTAYSHENLMDQDIC 585

Query: 597 MLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFI 656
            LALD L S++++P  RKW  DG  ESDD   R +N S+L+ APCSVGIL  RG    + 
Sbjct: 586 NLALDHLTSMIIVPSGRKWSPDGEYESDDIMIRRVNESLLDLAPCSVGILNYRG----YN 641

Query: 657 SSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKV 716
             +    S   V +IF+GG DDREAL+LAK M QN+ + LTV RF+   +   S NW+ +
Sbjct: 642 KGKKKTNSIINVGVIFIGGKDDREALSLAKWMGQNSRVCLTVIRFLSGQELDKSKNWDYL 701

Query: 717 LDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTS 776
           +D EVL ++K   +      Y+ ++VN G      ++ V   +DL+IVGR     +   +
Sbjct: 702 VDDEVLNDLKATYSLANNFNYMEKVVNGGPAVATTVRLVAEDHDLMIVGRDHEDYSLDLT 761

Query: 777 GLDRCREFPELGIVGNCLVTEDLPGR 802
           GL +  E PELG++G+ L ++DL  R
Sbjct: 762 GLAQWMELPELGVIGDLLASKDLRAR 787

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	815
224142305	782	cation proton exchanger [Populus trichoc	0.932	0.971	0.490	0.0
255564875	776	monovalent cation:proton antiporter, put	0.930	0.976	0.477	0.0
225434429	764	PREDICTED: cation/H(+) antiporter 3-like	0.926	0.988	0.481	0.0
224091881	701	cation proton exchanger [Populus trichoc	0.856	0.995	0.508	0.0
297745811	1497	unnamed protein product [Vitis vinifera]	0.888	0.483	0.425	1e-167
449463487	795	PREDICTED: cation/H(+) antiporter 3-like	0.941	0.964	0.408	1e-163
356529113	777	PREDICTED: cation/H(+) antiporter 3-like	0.930	0.975	0.415	1e-163
255565469	790	monovalent cation:proton antiporter, put	0.919	0.948	0.406	1e-161
449529582	779	PREDICTED: cation/H(+) antiporter 3-like	0.931	0.974	0.405	1e-159
449452132	770	PREDICTED: cation/H(+) antiporter 4-like	0.903	0.955	0.4	1e-159

>gi|224142305|ref|XP_002324499.1| cation proton exchanger [Populus trichocarpa] gi|222865933|gb|EEF03064.1| cation proton exchanger [Populus trichocarpa]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/773 (49%), Positives = 526/773 (68%), Gaps = 13/773 (1%)

Query: 40  SRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPM 99
           ++ C  +PP VNSNG  Q       H   ASLP LEL +   F ++H CHF+LKR+GI +
Sbjct: 19  TKKCTSIPPNVNSNGWLQ-----NEHSLTASLPILELHMFAIFLISHGCHFILKRYGIHI 73

Query: 100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQ 159
           + SQI  G+I+G    G    Y  +  +  S   L  +A  GY LF F+ G+KMD+++++
Sbjct: 74  LVSQILAGVIVGTTGLGHQSDYTRIFLTVDSKQILGTLAGLGYQLFGFINGIKMDIALVR 133

Query: 160 KTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACL 219
           KT K ++++G+L+++IP +LG      +S+   +   D++ L +V +V S++ FP I   
Sbjct: 134 KTEKMAIYSGILSMVIPVVLGGVTGRMVSKYWNLDKLDRLSLILVMLVQSMTPFPVICSF 193

Query: 220 VSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLA 279
           + DL++ NSELGRLGLS  L SEM+  +L   A +I   Y     +A  ++ I V +L+ 
Sbjct: 194 IGDLKLTNSELGRLGLSSVLTSEMLTQVLALVAFFIGIAYKQRAQAAIESVVISVAFLVV 253

Query: 280 VVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVP 339
           V++VVRPAM WV+KQTP+G+PV  L+   II  AL +G + +  G +V+ G  VFGLAVP
Sbjct: 254 VLYVVRPAMFWVIKQTPKGRPVKDLYTDIIIFGALASGALFNYIGLNVFLGSLVFGLAVP 313

Query: 340 AGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAK 399
           AGPPL SA+VEK++ +V+G+ +PL +   +M  +L  I   DD + KSTA++V VV+LAK
Sbjct: 314 AGPPLASAVVEKIECIVTGVLVPLFMAMCTMGADLLKIDF-DDYILKSTAIVVFVVILAK 372

Query: 400 VATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVT 459
               ++P LY K+PK+DA ALA ++STKGIVE+ ++   R +  LT+ MF+FL + +L++
Sbjct: 373 FGAYLVPLLYFKLPKQDALALAFLISTKGIVELGSFTYMRELGILTEGMFAFLVITVLLS 432

Query: 460 AIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCP 519
           A I   +V ++YDPSRKYAGYQKRNIM HSK   ELRIL CIYRPDN   II F+++ CP
Sbjct: 433 ATISSFVVNWVYDPSRKYAGYQKRNIM-HSK---ELRILTCIYRPDNTTIIINFIKSLCP 488

Query: 520 KRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTAC- 578
              S  +V VLHLI + GRA+P+FISH+MQKKTVS  S S NVILSFK F++ N+G A  
Sbjct: 489 TIQSPFSVSVLHLIKISGRASPMFISHQMQKKTVSLHSISGNVILSFKHFQQ-NYGDAVS 547

Query: 579 VYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLER 638
           V  FTAISPPK MHED+C LALD+LA  +VLPFH+KW +DGSIES+D+T R LNC VLER
Sbjct: 548 VNVFTAISPPKFMHEDICTLALDELACFLVLPFHKKWLVDGSIESEDSTLRTLNCCVLER 607

Query: 639 APCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTV 698
           APCSVGILIDRG   + I  E S G S  V ++F GG+DD+EAL LAKRMSQN +I++ +
Sbjct: 608 APCSVGILIDRGNQVKSIFLESSRGPSLLVVVLFFGGNDDQEALVLAKRMSQNRNISIKI 667

Query: 699 FRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPK 758
            RFI  TDE+   N + +L+S+ L  +  +   ++ V Y+ E V++G ET   I+S++ K
Sbjct: 668 ARFIPSTDEL-EINRDSMLESQALNYIMHDYTEHETVDYIEERVSDGLETSKTIRSMLDK 726

Query: 759 YDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQ 811
           YDL IVGRR + +TPQT+GLD   E+PELG++G+ L + D   +YSVLVV+QQ
Sbjct: 727 YDLFIVGRRKDIQTPQTAGLDDMNEYPELGVIGSLLASMDTTEKYSVLVVKQQ 779

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564875|ref|XP_002523431.1| monovalent cation:proton antiporter, putative [Ricinus communis] gi|223537321|gb|EEF38951.1| monovalent cation:proton antiporter, putative [Ricinus communis]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/766 (47%), Positives = 517/766 (67%), Gaps = 8/766 (1%)

Query: 43  CMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIAS 102
           C  +PP +NSNGIW+ I  + N     SLP L+LQII+ F +T ACHFVLK FG P+I S
Sbjct: 11  CTKLPPNINSNGIWENI-NSPNSVLTYSLPLLQLQIIMIFFITQACHFVLKHFGFPIIIS 69

Query: 103 QITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTG 162
           Q+  G+ILG ++ G +  +K +LF+  S   L  VAT GY LF F+ GVKMDVSMI KTG
Sbjct: 70  QLIAGVILGPSLLGSSTEFKDMLFTIDSQDILGTVATLGYTLFMFVCGVKMDVSMIFKTG 129

Query: 163 KKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSD 222
            K+   G L+L  P + G      + R   +  +    L+V+T V S + FP I+ L+SD
Sbjct: 130 GKATAIGFLSLAAPLVFGLTVEVLLERSW-LAEDLPSNLYVITSVLSATPFPVISTLLSD 188

Query: 223 LRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVF 282
           L+I+NSELGRLGLS A++ E+  + L   A  I     + +  A+R+L  ++ ++   +F
Sbjct: 189 LKILNSELGRLGLSAAMIGEIGTVGLFTLATLITVGKESSVQMAFRSLICIIGFIAFSIF 248

Query: 283 VVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP 342
            +RPAM W++KQTP+G+PV  ++IH II +  G   +S+ +GQ ++FGPF+ GLA+P GP
Sbjct: 249 AIRPAMFWIIKQTPKGRPVKDMYIHVIIFMVFGTAILSNSYGQSIFFGPFILGLAIPDGP 308

Query: 343 PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVAT 402
           PLGSA+V KLD MVSG+F+PL VT+++MR     ++L + NL  +  +++ V + AK+  
Sbjct: 309 PLGSAIVHKLDCMVSGIFVPLFVTTSTMRAEFGTLRL-NKNLITAEIILIIVTLTAKLGA 367

Query: 403 TMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAII 462
            +I  LYC++P  D+ ALAL+MS KGIVE++TY+  R+ + ++ + F+ L V +LVTA I
Sbjct: 368 CLIASLYCQMPLNDSLALALVMSCKGIVELATYSFLRDNKIVSSETFTLLIVSVLVTATI 427

Query: 463 IPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRG 522
           +P+LVK LYDP RKYAGYQKRNI+ + + + ELRIL CI+ PD+I A I  L ASCP   
Sbjct: 428 VPMLVKKLYDPCRKYAGYQKRNIL-NLRYNSELRILVCIHSPDDITAAINVLDASCPNPE 486

Query: 523 SLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPF 582
             ++V VLHL+ L GRA+P+FISH +Q K+VS  SYS+NVI SF  +++KN G   +  F
Sbjct: 487 KPLSVSVLHLMKLIGRASPIFISHNIQIKSVSKHSYSDNVITSFNQYQQKNIGAVSISTF 546

Query: 583 TAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCS 642
           TAISPPKLMHED+C LALDKLAS+++LPFH  W   GSI S+D T RALN ++LERAPCS
Sbjct: 547 TAISPPKLMHEDICTLALDKLASLIILPFHINWSSAGSIVSEDTTIRALNHNILERAPCS 606

Query: 643 VGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFI 702
           +GIL++RG + R  + +    S  RVAMIFLGG+DDREALT AKRM+  +S    +   +
Sbjct: 607 IGILVNRGHLRRTKAEQ----SPKRVAMIFLGGNDDREALTFAKRMAIGSSAITIMVINL 662

Query: 703 VKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLV 762
           V  D+   T WE++LDSE LK+VK     ++ V +   +V +G +T   ++ +  +YDL+
Sbjct: 663 VANDQKDITTWEQMLDSETLKDVKHNTGGSRYVTFKEVVVKDGTQTACILRGMACQYDLI 722

Query: 763 IVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808
           IVGRR+    P+T+GL    EFPELG+VG+ L + D+  + S+LV+
Sbjct: 723 IVGRRNGINCPRTTGLAEWSEFPELGVVGDLLASSDVNCKASILVM 768

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434429|ref|XP_002277574.1| PREDICTED: cation/H(+) antiporter 3-like [Vitis vinifera]

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/770 (48%), Positives = 504/770 (65%), Gaps = 15/770 (1%)

Query: 43  CMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIAS 102
           C  +PP VNS G+W++       P    LP L++QI+   AV H  HFVLK  G+PM+ S
Sbjct: 8   CTELPPKVNSFGVWKY----EKGPLKFPLPLLQMQILAILAVIHTLHFVLKHLGLPMLIS 63

Query: 103 QITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTG 162
           +I  GL+LG +  G    Y  +  +  S   +  ++ FGY LF FL GVKMD+ MI  TG
Sbjct: 64  EIAAGLLLGGSALGNISAYSEMFLNVESQNIIGTLSIFGYTLFMFLIGVKMDMGMISNTG 123

Query: 163 KKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSD 222
           KK+L  G+L LL P ++G A        L    ++   L  +  VHSL+ FP IACL+S+
Sbjct: 124 KKALAVGILALLGPLIVGMAV---AVICLEFWAKEATNLTYIAAVHSLTPFPVIACLLSE 180

Query: 223 LRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVF 282
           L+I+NSELGRL LS A+VS++  L LT  ++ + +   AP H+A   +   VV++L VV+
Sbjct: 181 LKILNSELGRLALSSAIVSDLFSLFLTIVSVVVRTREGAPWHTAVVTVVSPVVFVLVVVY 240

Query: 283 VVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP 342
           ++RPAM WVV QTPEG+ V +++I+ II+  L  G  SD FGQ+V FG F+FGLAVP GP
Sbjct: 241 ILRPAMFWVVAQTPEGRAVKNVYIYAIILGLLFCGIFSDFFGQYVIFGAFIFGLAVPDGP 300

Query: 343 PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVAT 402
           PLGSALVEKLD MVS + +P+ + + +MR N+ D+    D    +   I+   ++AK+  
Sbjct: 301 PLGSALVEKLDSMVSLVLMPIFMATCAMRANVIDVFRKGDKETVANIFIILATLIAKIGA 360

Query: 403 TMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAII 462
            + P LYCK+P  DA AL+LIMS KG V ++T ++ R+   + D++F  + +   + A I
Sbjct: 361 CVAPLLYCKMPCNDALALSLIMSAKGTVNMATQSVLRDSGVVDDEIFGLMVIATTLNAAI 420

Query: 463 IPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRG 522
           +P LV+ LYDPSRKYAGYQ RNIM H K + ELRILAC++  + + +II  L AS P R 
Sbjct: 421 VPFLVRKLYDPSRKYAGYQTRNIM-HCKPNAELRILACVHEQEGVTSIINLLNASNPTRD 479

Query: 523 SLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPF 582
           + +++YVLHLI+L GRA P+FISH MQK+TVSN SYSENVIL+   ++  N G A  + F
Sbjct: 480 NPISIYVLHLIELVGRATPIFISHDMQKRTVSNHSYSENVILALNRYQRNNGGAALTHVF 539

Query: 583 TAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCS 642
           TAISP KLMHED+C LAL+KLA  +++PFHRKW I GSIESD+   R LNCSVL+ APCS
Sbjct: 540 TAISPHKLMHEDICTLALNKLALFMIIPFHRKWNIGGSIESDEQRIRNLNCSVLDMAPCS 599

Query: 643 VGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFI 702
           VGIL+DR ++GR      S   SF +A+IFLGG+DDRE L  AKRM    ++NLT+  F+
Sbjct: 600 VGILVDRAQLGR------SASQSFYIALIFLGGNDDREGLAYAKRMVSGPNVNLTIAHFL 653

Query: 703 VKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLV 762
              DE  +  WE +LD E LK++K  N   ++V Y+  +V +G ET   ++S+  +YDL+
Sbjct: 654 PMDDEN-TNEWENILDDEALKDIKHSNLGFEQVNYLQRVVKDGPETALIVRSMTSQYDLI 712

Query: 763 IVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQ 812
           IVGRR   E+P TSGL    EFPELG +G+ L   DL    SVLVVQQQ+
Sbjct: 713 IVGRRHGVESPLTSGLTEWSEFPELGALGDLLAASDLDSNASVLVVQQQR 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091881|ref|XP_002309384.1| cation proton exchanger [Populus trichocarpa] gi|222855360|gb|EEE92907.1| cation proton exchanger [Populus trichocarpa]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/704 (50%), Positives = 476/704 (67%), Gaps = 6/704 (0%)

Query: 108 LILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLF 167
           +ILG+A  GL   Y+ ++F+  S      +  FG+ LF FL GVKMD+S+I+KTG+ +L 
Sbjct: 1   MILGKAGLGLQADYRRIMFAIDSDQLFGTIGGFGFQLFVFLNGVKMDLSLIRKTGRMALC 60

Query: 168 TGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIIN 227
           +G+L++++  L GA     +S  LG+   DK+ L +V +VHS++ FP     VSDL + +
Sbjct: 61  SGVLSMVMSVLFGAVTTSIVSSYLGLLELDKLSLSLVMLVHSMTPFPVTCSFVSDLELTH 120

Query: 228 SELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPA 287
           SELGRLGLS AL SE++   L  +A+ +   Y      A + + I   +++  VFVVRPA
Sbjct: 121 SELGRLGLSAALSSELLTQFLACNALLVGIFYRYHYQGALKIVAITTAFIILTVFVVRPA 180

Query: 288 MLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSA 347
           MLWV+KQTPEG+PV  L+I++I++ AL +G I    G +++ G   FGLAVPAGPPL SA
Sbjct: 181 MLWVIKQTPEGRPVRDLYIYSIVLGALVSGLIFHFIGLNMFLGSLAFGLAVPAGPPLASA 240

Query: 348 LVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPP 407
           LVEK + MVSG+ +P  +   +M+ N  +I   D  L K TA++V VV L K    ++  
Sbjct: 241 LVEKFECMVSGVLVPFFMAMCTMKANFREISF-DKKLTKGTAIVVTVVSLTKFGACLVTL 299

Query: 408 LYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILV 467
            Y ++PK+DAFALA I+S+KGIVE+  Y         T+ MFSFL + IL++A I PI V
Sbjct: 300 FYYRMPKQDAFALAFIISSKGIVELGAYAFISESGVFTEGMFSFLVITILLSATISPIFV 359

Query: 468 KFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTV 527
            +LYDPSRKYAGYQKRNIM HSK   +L +LACIYRPDN+ +II FLQA CP   S V+V
Sbjct: 360 NWLYDPSRKYAGYQKRNIM-HSK---DLCVLACIYRPDNVTSIINFLQAFCPTLESPVSV 415

Query: 528 YVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISP 587
             LHLI + GRA  LFISH+ QKK++S RS SENVILSF  F   N     V  FT+ISP
Sbjct: 416 CALHLIKISGRATSLFISHQKQKKSLSARSISENVILSFSNFWRNNCEIESVNVFTSISP 475

Query: 588 PKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI 647
            K MH+D+C LALD+LAS +VLPFH KW +DGSIES D+  R LNC VLERAPCSVGILI
Sbjct: 476 TKFMHQDICTLALDELASFIVLPFHLKWLVDGSIESQDSRFRTLNCCVLERAPCSVGILI 535

Query: 648 DRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDE 707
           D G     IS + S   S  VA++F GG DDREA  LA+RMSQ+ +I+LT+  F++ T E
Sbjct: 536 DHGNQVNSISRDSSREQSLLVALMFFGGEDDREARVLAERMSQHRNISLTIIHFVLSTGE 595

Query: 708 MISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRR 767
            I ++WEK+ DSE L+ +KP +  ++ VKY+ E V++G ET  KI+S++ KYDL IVGR 
Sbjct: 596 -IKSDWEKMQDSERLRNIKPGSIEHREVKYIEETVSDGLETSKKIRSILDKYDLFIVGRS 654

Query: 768 DNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQ 811
            + ET QT+GLD   E+PELG++GN L + +   RYSVLVVQQQ
Sbjct: 655 KDVETIQTAGLDYMNEYPELGVIGNLLASMETTERYSVLVVQQQ 698

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745811|emb|CBI15867.3| unnamed protein product [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 342/803 (42%), Positives = 471/803 (58%), Gaps = 79/803 (9%)

Query: 10   GVEVLRAGLKMTELNPRPFVGSENQGYNLSSRFCMPVPPYVNSNGIWQFIGKAGNHPWDA 69
            G+  +  G +    NPR    S      L S  C  +PP VNS G+W++       P   
Sbjct: 772  GLGAVSTGKRRGRTNPR----SGQMPEQLLS--CTELPPKVNSFGVWKY----EKGPLKF 821

Query: 70   SLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDT 129
             LP L++QI+   AV H  HFVLK  G+PM+ S+I  GL+LG +  G    Y  +  +  
Sbjct: 822  PLPLLQMQILAILAVIHTLHFVLKHLGLPMLISEIAAGLLLGGSALGNISAYSEMFLNVE 881

Query: 130  SLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSR 189
            S   +  ++ FGY LF FL GVKMD+ MI  TGKK+L  G+L LL P ++G A       
Sbjct: 882  SQNIIGTLSIFGYTLFMFLIGVKMDMGMISNTGKKALAVGILALLGPLIVGMAV---AVI 938

Query: 190  ILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILT 249
             L    ++   L  +  VHSL+ FP IACL+S+L+I+NSELGRL LS A+VS++  L LT
Sbjct: 939  CLEFWAKEATNLTYIAAVHSLTPFPVIACLLSELKILNSELGRLALSSAIVSDLFSLFLT 998

Query: 250  RSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNI 309
              ++ + +   AP H+A   +   VV++L VV+++RPAM WVV QTPEG+ V +++I+ I
Sbjct: 999  IVSVVVRTREGAPWHTAVVTVVSPVVFVLVVVYILRPAMFWVVAQTPEGRAVKNVYIYAI 1058

Query: 310  IMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSAS 369
            I+  L  G  SD FGQ+V FG F+FGLAVP GPPLGSALVEKLD MVS + +P+ + + +
Sbjct: 1059 ILGLLFCGIFSDFFGQYVIFGAFIFGLAVPDGPPLGSALVEKLDSMVSLVLMPIFMATCA 1118

Query: 370  MRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGI 429
            MR N+ D+    D    +   I+   ++AK+   + P LYCK+P  DA AL+LIMS KG 
Sbjct: 1119 MRANVIDVFRKGDKETVANIFIILATLIAKIGACVAPLLYCKMPCNDALALSLIMSAKGT 1178

Query: 430  VEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHS 489
            V ++T ++ R+   + D++F  + +   + A I+P LV+ LYDPSRKYAGYQ RNIM H 
Sbjct: 1179 VNMATQSVLRDSGVVDDEIFGLMVIATTLNAAIVPFLVRKLYDPSRKYAGYQTRNIM-HC 1237

Query: 490  KASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQ 549
            K + ELRILAC++  + + +II  L AS P R + +++Y                     
Sbjct: 1238 KPNAELRILACVHEQEGVTSIINLLNASNPTRDNPISIY--------------------- 1276

Query: 550  KKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVL 609
             +TVSN SYSENVIL+   ++  N G A  + FTAISP KLMHED+C LAL+KLA  +++
Sbjct: 1277 -RTVSNHSYSENVILALNRYQRNNGGAALTHVFTAISPHKLMHEDICTLALNKLALFMII 1335

Query: 610  PFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVA 669
            PFHRKW I GSIESD+   R LNCSVL+ APCSVGIL+DR                    
Sbjct: 1336 PFHRKWNIGGSIESDEQRIRNLNCSVLDMAPCSVGILVDR-------------------- 1375

Query: 670  MIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPEN 729
                                   ++NLT+  F+   DE  +  WE +LD E LK++K  N
Sbjct: 1376 ----------------------PNVNLTIAHFLPMDDEN-TNEWENILDDEALKDIKHSN 1412

Query: 730  NFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGI 789
               ++V Y+  +V +G ET   ++S+  +YDL+IVGRR   E+P TSGL    EFPELG 
Sbjct: 1413 LGFEQVNYLQRVVKDGPETALIVRSMTSQYDLIIVGRRHGVESPLTSGLTEWSEFPELGA 1472

Query: 790  VGNCLVTEDLPGRYSVLVVQQQQ 812
            +G+ L   DL    SVLVVQQQ+
Sbjct: 1473 LGDLLAASDLDSNASVLVVQQQR 1495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463487|ref|XP_004149465.1| PREDICTED: cation/H(+) antiporter 3-like [Cucumis sativus]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 322/789 (40%), Positives = 471/789 (59%), Gaps = 22/789 (2%)

Query: 37  NLSSRFCMPVPPYVNSNGIWQFIGKAGNHPW--DASLPRLELQIIVAFAVTHACHFVLKR 94
           N+++  C+ +PPYVNS G+W    +  +  W  + SLP LE Q+IV        +F LKR
Sbjct: 10  NMTATICIDIPPYVNSKGLWV---EFDDSEWWLNPSLPLLEFQLIVLCFSLAITYFFLKR 66

Query: 95  FGIPMIASQITGGLILGQAIPGLNRY-YKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM 153
           FGI  ++ QI  GL  G +         KH+  +  S   L L+A FGY L+  LT  K 
Sbjct: 67  FGISKLSCQILVGLAFGWSWNEEEEAKLKHL--NVGSQDVLVLLANFGYTLYILLTVAKY 124

Query: 154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRF 213
           D+ MI  TG+ SL  G+  LL+P ++       +     +       L ++   H+ + F
Sbjct: 125 DLKMIMGTGRSSLIIGMSALLLPLIIQTLVESMVVEEWELTEIQIESLPLLISFHATTSF 184

Query: 214 PSIACLVSDLRIINSELGRLGLSCALVSEMIG--LILTRSAIWIASIYHAPLHSAYRNLG 271
           P +A LV +L I+NSELGRLGLS ALVS++ G  +++ +  I    I  + + +    + 
Sbjct: 185 PVVASLVKELHIMNSELGRLGLSSALVSDIFGTFIMIIKGQILQYRINPSLIST---EIC 241

Query: 272 IMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGP 331
           + ++ +L  +FV+RP MLW++K TP+G PV + +I  +I + L    +    G     G 
Sbjct: 242 VYIMLILVALFVLRPTMLWIIKHTPQGMPVKNCYIEGVIFVTLLYTVLETFTGHACIIGA 301

Query: 332 FVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIK--LLDDNLAKSTA 389
           +V GLA+PAG PL S LV K++ +V  +F+P+ VT+ ++R +LS I     D    K   
Sbjct: 302 YVLGLAIPAGAPLASTLVNKIECLVENIFMPIFVTTCALRADLSKISATTFDVVFTKLNI 361

Query: 390 VIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMF 449
            ++ +    K   ++    YC++P +DA AL+LIM +KG VE+ +Y +S +   + +++F
Sbjct: 362 TMLCLACTVKFVASVSSSKYCQLPFKDALALSLIMCSKGPVELISYTMSVDYNVVDNELF 421

Query: 450 SFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPA 509
               V IL+ A I+PI VK LYDPSRKYAGYQ RNIM  ++ + EL++LACI++ +N+ A
Sbjct: 422 GCFIVYILLFATIVPIAVKGLYDPSRKYAGYQNRNIMHLNRFNDELQLLACIHQHENVNA 481

Query: 510 IIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLF 569
           II  L  SCP   + + V++ HLI+L GR AP+FISHK Q      RSYS ++I +F  F
Sbjct: 482 IIHLLNLSCPTIENPIIVHLFHLIELPGRFAPIFISHKRQNNPFDKRSYSRHIIHAFDRF 541

Query: 570 EEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKR 629
           E +N GT  V  FTA+SP  +MH DVC LALDK  S ++LPFH  W +DG IE  DN  R
Sbjct: 542 ERENDGTVYVECFTAVSPCTVMHNDVCTLALDKTTSFIILPFHITWTMDGYIERVDNNVR 601

Query: 630 ALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMS 689
            LN +VL+RAPCSVGI  DRG++    + +    SS+ V +IFLGG DDREAL+ AKRM 
Sbjct: 602 TLNYNVLKRAPCSVGIFADRGKLEHIKARK---RSSYSVCVIFLGGKDDREALSYAKRMV 658

Query: 690 QNTSINLTVFRFIVKTD----EMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEG 745
           ++  + LTV R     D     M+  +WE ++D EV+K+ K +   ++RV Y  E+  +G
Sbjct: 659 KDLRVELTVLRLKAPQDYQNRSMLRNSWEYIMDEEVVKDFKGKCLGDERVVYEEEVCRDG 718

Query: 746 QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSV 805
           QET   ++ VV  +DL+IVGRRD  ETPQT GL+   EFPELG +G+ + + D+    S+
Sbjct: 719 QETAFVLRKVVDMFDLMIVGRRDGLETPQTDGLNEWNEFPELGHLGDLIASSDINTGTSL 778

Query: 806 LVVQQQQTT 814
           LV+QQQQ +
Sbjct: 779 LVIQQQQIS 787

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529113|ref|XP_003533141.1| PREDICTED: cation/H(+) antiporter 3-like [Glycine max]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 326/785 (41%), Positives = 487/785 (62%), Gaps = 27/785 (3%)

Query: 44  MPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQ 103
           M +PP VNS   W      G  P +A LP L++Q+ + F  T   H  L R G+P   S 
Sbjct: 1   MDLPPRVNSEMSWS--TTKGILPENA-LPMLQMQMCLIFLATFFLHTFLGRLGVPRFTSM 57

Query: 104 ITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGK 163
              GLI               LF   S   L L++ FGY+LF F TGVK D+S++ ++ +
Sbjct: 58  SVVGLIFATTFSEKWAQKCRDLFIFDSQANLGLLSVFGYMLFLFYTGVKTDMSVVHRSRR 117

Query: 164 KSLFTGLLTLLIPFLLGAAALEKMS-RILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSD 222
            +   G + ++ PFL   A +   S + L IG     KL V++ + S++ F +I  ++SD
Sbjct: 118 NATNIGSIAIMAPFLCSMAVVHFHSIKYLDIG--QATKLGVISGLFSMTPFSTICTVLSD 175

Query: 223 LRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVF 282
           L+I+NSELGRL  S  LV+E+  L L     +   ++  P   A+ +L   V ++L VVF
Sbjct: 176 LKILNSELGRLAQSSTLVTEVFNLFLITILTFSKIVFQEP-SRAWFSLAAAVFFVLLVVF 234

Query: 283 VVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP 342
           ++RPAM W++KQTPEG PV+  +++ I++L L + Y +   G    FGP V GLA P GP
Sbjct: 235 IIRPAMFWIIKQTPEGSPVSDHYVYCILILVLLSSYATHRIGFFALFGPCVLGLATPEGP 294

Query: 343 PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKL--------LDDNLAKSTAVIVAV 394
           PLG+A+ +K+D  V+ + +P  VT+ +MR +L D           +D+ + ++  +IV  
Sbjct: 295 PLGTAITKKIDTFVNWVLVPAFVTTCAMRVDLRDFMNWTEKVNGGVDEFMVQTLIIIVVT 354

Query: 395 VVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTV 454
            V+  VA T+ PPLY  +P  D+ +LALIM+ KG+VE++ Y++ R++  + D +F+ + V
Sbjct: 355 SVVKVVACTL-PPLYSNMPLNDSVSLALIMNCKGVVEMAGYSMVRDVMGMPDNVFALVMV 413

Query: 455 EILVTAIIIPILVKFLYDPSRKYAG-YQKRNIMQHSKASGELRILACIYRPDNIPAIIKF 513
            I++ A  IP+++  LYDP +KYAG Y KRNI    K +GELR+L CI+RPDNIP  I  
Sbjct: 414 CIILNATAIPMVLTHLYDPMKKYAGNYTKRNIFDL-KTNGELRVLTCIHRPDNIPPTINL 472

Query: 514 LQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKK--TVSNRSYSENVILSFKLFEE 571
           L+A+ P +   V  YVL LI+L GRA+PLF+ H++QKK    SN S +E ++ +F+ FE+
Sbjct: 473 LEATFPTKEDPVCAYVLQLIELIGRASPLFVCHQLQKKKRADSNSSMAEKLVDAFQNFEQ 532

Query: 572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGS-IESDDNTKRA 630
           +  G   V  FT+ISP + M++D+C LALDK AS++VLPFH+KW  DG+ IE +D + R 
Sbjct: 533 EFKGALVVNTFTSISPQENMYDDICTLALDKFASLIVLPFHKKWSSDGNFIEIEDESLRE 592

Query: 631 LNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQ 690
           LN  V+ERAPCSVGILI+R ++    S E    + + V M+F+GG DDREAL  AKRM++
Sbjct: 593 LNYRVMERAPCSVGILIERAQMTHIFSPE----TPYTVCMLFIGGKDDREALFFAKRMTK 648

Query: 691 NTSINLTVFRFIVKT-DEMISTNWEKVLDSEVLKEVKPENNFNQR-VKYVVEMVNEGQET 748
           N  + LTV RF V + +EM + +W+ +LD+E+L ++K      +  V Y+ + V +G +T
Sbjct: 649 NPHVRLTVVRFFVDSCNEMNTRDWQGMLDTEILNDIKVNKKVGEAYVNYIEKTVKDGPDT 708

Query: 749 LAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808
              I+S+V +YDL+IVGR+   ETPQTSGL +  E+PELG++G+ L + D  G+ SV V+
Sbjct: 709 ALVIRSLVTEYDLIIVGRQAGVETPQTSGLLQWSEYPELGVLGDLLASTDAAGKASVFVM 768

Query: 809 QQQQT 813
           QQQ+T
Sbjct: 769 QQQRT 773

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565469|ref|XP_002523725.1| monovalent cation:proton antiporter, putative [Ricinus communis] gi|223537029|gb|EEF38665.1| monovalent cation:proton antiporter, putative [Ricinus communis]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 318/782 (40%), Positives = 483/782 (61%), Gaps = 33/782 (4%)

Query: 43  CMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIAS 102
           C+ +PP VNS G+       G+     +LP LELQ+ + F  T+A HF+LK FG  +  S
Sbjct: 24  CLNIPPNVNSRGMVNPPKPPGDF-LTYTLPLLELQMGLIFIFTNAIHFMLKPFGASLFIS 82

Query: 103 QITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTG 162
            +  G+ LG    G   + K+ +F   +   +  +A  GY +F FL  VKMDV M+ + G
Sbjct: 83  CLLAGVCLGPTFLGRYEFMKNSVFPHEAQDIITTLALLGYNMFLFLGAVKMDVGMVLRAG 142

Query: 163 KKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDK-MKLWVVTVVHSLSRFPSIACLVS 221
            K L  G+L++  P + G     + S       ED+ +  W V ++H+++ FP  A L+ 
Sbjct: 143 HKVLSIGVLSVTAPLIFGLTF--QNSHGGEFKTEDEFLGSWSVILIHAMTSFPVTAYLIG 200

Query: 222 -DLRIINSELGRLGLSCALVSEMIG------LILTRSAIWIASIYHAPLHSAYRNLGIMV 274
             L+I NSELGRL LS ALV +++G      L L ++  W+  +         +N   ++
Sbjct: 201 HQLKISNSELGRLSLSSALVGDLLGISTTITLSLVKTGTWVGVV---------QNFRPIL 251

Query: 275 VYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVF 334
            ++L  VFV+RPAM W++++TPE KPVN  +I+ I+ LA+G+    + F Q  Y GPF+ 
Sbjct: 252 GFVLVAVFVLRPAMNWIIRKTPERKPVNETYIYIIMALAIGSEAYFNYFHQVQYLGPFII 311

Query: 335 GLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAV 394
           GLA PAG PLGSALVEK +P    +   ++  ++ MR +L  +      L K   VI   
Sbjct: 312 GLATPAGAPLGSALVEKFEPFTLDVLFQILTATSMMRADLWLVVSEYTKLRKYVTVICVT 371

Query: 395 VVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTV 454
             L K+  T++P L  ++P  DA AL+++++ KGIVE+S   + R+++ +++++FS + +
Sbjct: 372 CSL-KLIATLLPALLARMPLIDAMALSVVLNYKGIVELSLSVVYRDLQMISEEVFSLVAL 430

Query: 455 EILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFL 514
            I + A I+P+LV   YDPSRKYAGYQ RNIM   K + EL+ILAC++RPD++ +II+ L
Sbjct: 431 SIFLNATILPLLVYSFYDPSRKYAGYQARNIMS-LKPNSELKILACVHRPDDVKSIIRLL 489

Query: 515 QASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW 574
            AS P +   + VYVLHLI L GR+ P  ISH  QK  +SN S S+NVI +F  +E+ NW
Sbjct: 490 DASGPSKDHPIGVYVLHLIKLIGRSTPFLISHSKQK-VISNSS-SKNVIHAFTQYEKNNW 547

Query: 575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCS 634
           G   +  FTA+S  +LMHED+C LALDKL S++++P HRKW I G++ES+D   R LNC 
Sbjct: 548 GAVSMQFFTAMSMYELMHEDICTLALDKLTSLIIIPLHRKWSIHGNVESEDRYLRTLNCK 607

Query: 635 VLERAPCSVGILIDRGRIG--RFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNT 692
           VL++APCSVGI  DRGR+G  R   SE     +  + M+F GG DDREALTLAKRM++++
Sbjct: 608 VLDKAPCSVGIFFDRGRLGRQRIAPSE---SPTLSLCMLFFGGKDDREALTLAKRMARDS 664

Query: 693 SINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVK--PENNFNQRVKYVVEMVNEGQETLA 750
           + +LTV  F  +  +M   + ++++D+ +L+++K   +++ N  + Y+   V +G ET+ 
Sbjct: 665 NASLTVVHFTAR--DMFIASEDRMVDAVLLEDIKQRADDDSNGGIAYIEHAVRDGPETVL 722

Query: 751 KIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQ 810
            I+++   YD+ ++GRR +  +PQT+GL    E PELGI+G+   ++DL  + SVLVVQQ
Sbjct: 723 IIRAMANDYDVFLLGRRYDIASPQTAGLSLWSELPELGIIGDFFASKDLDIKASVLVVQQ 782

Query: 811 QQ 812
           Q+
Sbjct: 783 QK 784

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529582|ref|XP_004171777.1| PREDICTED: cation/H(+) antiporter 3-like, partial [Cucumis sativus]

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 317/781 (40%), Positives = 464/781 (59%), Gaps = 22/781 (2%)

Query: 37  NLSSRFCMPVPPYVNSNGIWQFIGKAGNHPW--DASLPRLELQIIVAFAVTHACHFVLKR 94
           N+++  C+ +PPYVNS G+W    +  +  W  + SLP LE Q+IV        +F LKR
Sbjct: 10  NMTATICIDIPPYVNSKGLWV---EFDDSEWWLNPSLPLLEFQLIVLCFSLAITYFFLKR 66

Query: 95  FGIPMIASQITGGLILGQAIPGLNRY-YKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM 153
           FGI  ++ QI  GL  G +         KH+  +  S   L L+A FGY L+  LT  K 
Sbjct: 67  FGISKLSCQILVGLAFGWSWNEEEEAKLKHL--NVGSQDVLVLLANFGYTLYILLTVAKY 124

Query: 154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRF 213
           D+ MI  TG+ SL  G+  LL+P ++       +     +       L ++   H+ + F
Sbjct: 125 DLKMIMGTGRSSLIIGMSALLLPLIIQTLVESMVVEEWELTEIQIESLPLLISFHATTSF 184

Query: 214 PSIACLVSDLRIINSELGRLGLSCALVSEMIG--LILTRSAIWIASIYHAPLHSAYRNLG 271
           P +A LV +L I+NSELGRLGLS ALVS++ G  +++ +  I    I  + + +    + 
Sbjct: 185 PVVASLVKELHIMNSELGRLGLSSALVSDIFGTFIMIIKGQILQYRINPSLIST---EIC 241

Query: 272 IMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGP 331
           + ++ +L  +FV+RP MLW++K TP+G PV + +I  +I + L    +    G     G 
Sbjct: 242 VYIMLILVALFVLRPTMLWIIKHTPQGMPVKNCYIEGVIFVTLLYTVLETFTGHACIIGA 301

Query: 332 FVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIK--LLDDNLAKSTA 389
           +V GLA+PAG PL S LV K++ +V  +F+P+ VT+ ++R +LS I     D    K   
Sbjct: 302 YVLGLAIPAGAPLASTLVNKIECLVENIFMPIFVTTCALRADLSKISATTFDVVFTKLNI 361

Query: 390 VIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMF 449
            ++ +    K   ++    YC++P +DA AL+LIM +KG VE+ +Y +S +   + +++F
Sbjct: 362 TMLCLACTVKFVASVSSSKYCQLPFKDALALSLIMCSKGPVELISYTMSVDYNVVDNELF 421

Query: 450 SFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPA 509
               V IL+ A I+PI VK LYDPSRKYAGYQ RNIM  ++ + EL++LACI++ +N+ A
Sbjct: 422 GCFIVYILLFATIVPIAVKGLYDPSRKYAGYQNRNIMHLNRFNDELQLLACIHQHENVNA 481

Query: 510 IIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLF 569
           II  L  SCP   + + V++ HLI+L GR AP+FISHK Q      RSYS ++I +F  F
Sbjct: 482 IIHLLNLSCPTIENPIIVHLFHLIELPGRFAPIFISHKRQNNPFDKRSYSRHIIHAFDRF 541

Query: 570 EEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKR 629
           E +N GT  V  FTA+SP  +MH DVC LALDK  S ++LPFH  W +DG IE  DN  R
Sbjct: 542 ERENDGTVYVECFTAVSPCTVMHNDVCTLALDKTTSFIILPFHITWTMDGYIERVDNNVR 601

Query: 630 ALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMS 689
            LN +VL+RAPCSVGI  DRG++    + +    SS+ V +IFLGG DDREAL+ AKRM 
Sbjct: 602 TLNYNVLKRAPCSVGIFADRGKLEHIKARK---RSSYSVCVIFLGGKDDREALSYAKRMV 658

Query: 690 QNTSINLTVFRFIVKTD----EMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEG 745
           ++  + LTV R     D     M+  +WE ++D EV+K+ K +   ++RV Y  E+  +G
Sbjct: 659 KDLRVELTVLRLKAPQDYQNRSMLRNSWEYIMDEEVVKDFKGKCLGDERVVYEEEVCRDG 718

Query: 746 QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSV 805
           QET   ++ VV  +DL+IVGRRD  ETPQT GL+   EFPELG +G+ + + D+    S+
Sbjct: 719 QETAFVLRKVVDMFDLMIVGRRDGLETPQTDGLNEWNEFPELGHLGDLIASSDINTGTSL 778

Query: 806 L 806
           L
Sbjct: 779 L 779

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452132|ref|XP_004143814.1| PREDICTED: cation/H(+) antiporter 4-like [Cucumis sativus]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 310/775 (40%), Positives = 477/775 (61%), Gaps = 39/775 (5%)

Query: 43  CMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIAS 102
           C+  PP +NS+GIW+F+  A    + AS                             + +
Sbjct: 23  CLNTPPKINSDGIWEFVFGAAPCLFSASF----------------------------VGA 54

Query: 103 QITGGLILGQAIPGLNRYY---KHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQ 159
               GLILG +  G    +   K  +F+  S   + L+A FGY LF FL GV+MD+S+++
Sbjct: 55  SPQTGLILGSSWRGSFESFDNFKDGVFATASQEIVGLLAGFGYTLFVFLIGVRMDLSVVK 114

Query: 160 KTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACL 219
           ++G++SL  G+L+++IP +LG+     +SR         M+   +    S + F  + CL
Sbjct: 115 RSGRQSLIGGILSIVIPAILGSLTAFGLSRFSKTHGTADMEF--IAAHQSYTSFAVMVCL 172

Query: 220 VSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLA 279
           +  L+I+NSE+GRL LS  +V++++GL  +     I ++      +      + +  L+ 
Sbjct: 173 LDHLKILNSEVGRLVLSTTIVADLVGLSFSLIITVIENVRSQGALNGLMTFAMAIGSLVL 232

Query: 280 VVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVP 339
           +VF+ RPAMLW+V+ TP G+PV   +I  II+L L +   S++ G+ VY GPF+ GL VP
Sbjct: 233 IVFLFRPAMLWIVRSTPSGRPVPDGYICIIILLVLVSSVTSNIMGRTVYSGPFILGLTVP 292

Query: 340 AGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAK 399
            GPPLG++LV+KLD +++ +F+PL VT + M+ +LS +   D      + +++ +  + K
Sbjct: 293 EGPPLGASLVKKLDSIITSVFVPLFVTISVMKVDLSFL-YYDGEFLIHSIIVIFISSIGK 351

Query: 400 VATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVT 459
           +A ++   LY K+   DA A  LIM +KGIVE++  +   +   L +Q F+ L  +IL+ 
Sbjct: 352 LAVSVGTALYFKMSSHDALAFGLIMCSKGIVELAACSYFYDSNLLYEQTFAVLIADILIF 411

Query: 460 AIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCP 519
           +I++P++VK+ YDPSRKY+ YQK+NI+ + K   EL IL CI+  D +P ++  L ASCP
Sbjct: 412 SILMPMVVKWFYDPSRKYSHYQKKNIL-NLKPDAELSILGCIHTQDGLPVLLNLLDASCP 470

Query: 520 KRGSLVTVYVLHLIDLRGRAAPLFISHKM-QKKTVSNRSYSENVILSFKLFEEKNWGTAC 578
              S +++Y LHL++L GRA P+FI+H++ ++K+ S    S+++I   + +E +N G   
Sbjct: 471 TEESPISLYALHLVELVGRATPVFITHELHEQKSSSEVMVSDSIIQMLRKYEMRNEGVVS 530

Query: 579 VYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLER 638
           +  FTAI+P KLMH+D+C +A++KL SI++LP HR+W  +G ++S+D+T RALNC VLER
Sbjct: 531 IEVFTAIAPMKLMHDDICTVAVNKLTSIIILPCHRRWTREGFVDSEDSTIRALNCQVLER 590

Query: 639 APCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQN-TSINLT 697
           APCSVGILIDRG +  + S   S  S  +VAM+FLGG DDREA + A+RM +  +S  LT
Sbjct: 591 APCSVGILIDRGHLSSYRSFGGSCASLLQVAMVFLGGQDDREAFSFARRMVKEVSSAQLT 650

Query: 698 VFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVP 757
           V R I + DE IS +WE VLD+E+L +VK      +  +YV    +EG ET   I+S+  
Sbjct: 651 VIRLIAE-DESIS-HWEMVLDTELLNDVKHSFVGGEPFRYVERRADEGSETATIIRSIGD 708

Query: 758 KYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQ 812
           +YDL+IVGRR+  ++PQTSGL    EFPELGI+G+ L + D   + S LVVQQQQ
Sbjct: 709 EYDLIIVGRREGIDSPQTSGLMEWNEFPELGIIGDMLASADSHFKASTLVVQQQQ 763

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	815
TAIR|locus:2082142	817	CHX4 "cation/H+ exchanger 4" [	0.727	0.725	0.391	1.3e-130
TAIR|locus:2172631	822	CHX3 "cation/H+ exchanger 3" [	0.892	0.884	0.365	6.5e-122
TAIR|locus:2205165	815	ATCHX5 [Arabidopsis thaliana (	0.925	0.925	0.355	2e-118
TAIR|locus:2054152	821	CHX15 "cation/hydrogen exchang	0.910	0.903	0.346	4.4e-116
TAIR|locus:2082102	783	CHX10 "cation/H+ exchanger 10"	0.728	0.758	0.352	6.3e-110
TAIR|locus:2205150	818	CHX6A "cation/H+ exchanger 6A"	0.930	0.926	0.327	5.7e-107
TAIR|locus:2172646	800	CHX9 "cation/H+ exchanger 9" [	0.894	0.911	0.331	2.5e-106
TAIR|locus:2007392	829	CHX14 "cation/hydrogen exchang	0.890	0.875	0.288	5e-92
TAIR|locus:2060827	831	ATCHX13 [Arabidopsis thaliana	0.890	0.873	0.286	4.6e-89
TAIR|locus:2128484	820	CHX17 "cation/H+ exchanger 17"	0.801	0.796	0.303	6.3e-89

TAIR|locus:2082142 CHX4 "cation/H+ exchanger 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
 Identities = 240/613 (39%), Positives = 369/613 (60%)

Query:   204 VTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYH--A 261
             + ++  LS FP I  L+ +LR+ NSELGRL +S A++S+    IL+   +++  +    +
Sbjct:   192 IYLIQCLSSFPVIGNLLFELRLQNSELGRLAMSSAVISDFSTSILSAVLVFLKELKDDKS 251

Query:   262 PLHSAY-----------RNLGIMXXXXXXXXXXXRPAMLWVVKQTPEGKPVNSLHIHNII 310
              L S +           +  G +           RP M +++K+TP G+PV   +I+ II
Sbjct:   252 RLGSVFIGDVIVGNRPMKRAGTVVLFVCFAIYIFRPLMFFIIKRTPSGRPVKKFYIYAII 311

Query:   311 MLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASM 370
             +L  G+  ++D   Q ++ GPF+ GLAVP GPPLGSA+++K + +V G F+P  V +++ 
Sbjct:   312 ILVFGSAILADWCKQSIFIGPFILGLAVPHGPPLGSAILQKFESVVFGTFLPFFVATSAE 371

Query:   371 RTNLSDIKLLDDNLAKSTXXXXXXXXXXXXXTTMIPPLYCKVPKRDAFALALIMSTKGIV 430
               + S ++   D   KS               T +P     +P +D  AL+LIMS KGI 
Sbjct:   372 EIDTSILQSWID--LKSIVILVSVSFIVKFALTTLPAFLYGMPAKDCIALSLIMSFKGIF 429

Query:   431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSK 490
             E   Y  +    ++    F+ L++ IL+ + +IP L+K +YDPSR YAGY+KRN++ H K
Sbjct:   430 EFGAYGYAYQRGTIRPVTFTVLSLYILLNSAVIPPLLKRIYDPSRMYAGYEKRNML-HMK 488

Query:   491 ASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQK 550
              + ELRIL+CIY+ D+I  +I  L+A+CP R + V  YVLHL++L G+A P+ ISH++Q 
Sbjct:   489 PNSELRILSCIYKTDDIRPMINLLEATCPSRENPVATYVLHLMELVGQANPVLISHRLQT 548

Query:   551 KTVSNRSY-SENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVL 609
             +   N SY SENV++SF+ F    +G+  V  +TA+S PK+MH D+CMLAL+   S+++L
Sbjct:   549 RKSENMSYNSENVVVSFEQFHNDFFGSVFVSTYTALSVPKMMHGDICMLALNNTTSLIIL 608

Query:   610 PFHRKWFIDGS-IESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLG-SSFR 667
             PFH+ W  DGS I SD    R LN SVL+ +PCSVGI + R   GR    E +   SS++
Sbjct:   609 PFHQTWSADGSAIVSDSLMIRQLNKSVLDLSPCSVGIFVYRSSNGRRTIKETAANFSSYQ 668

Query:   668 VAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMI-STNWEKVLDSEVLKEVK 726
             V M+FLGG DDREAL+LAKRM++++ I +TV   I        +T+W+++LD E+L++VK
Sbjct:   669 VCMLFLGGKDDREALSLAKRMARDSRITITVVSLISSEQRANQATDWDRMLDLELLRDVK 728

Query:   727 PENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPE 786
                     + +  E+VN+  +T   ++S+  +YDL IVGR    ++  T GL+   EF E
Sbjct:   729 SNVLAGADIVFSEEVVNDANQTSQLLKSIANEYDLFIVGREKGRKSVFTEGLEEWSEFEE 788

Query:   787 LGIVGNCLVTEDL 799
             LGI+G+ L ++DL
Sbjct:   789 LGIIGDLLTSQDL 801

GO:0006812 "cation transport" evidence=IEA;IC

GO:0008152 "metabolic process" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2172631 CHX3 "cation/H+ exchanger 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
 Identities = 279/764 (36%), Positives = 428/764 (56%)

Query:    65 HPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHV 124
             H W+ + P L++  ++   +    HF L+R G+    S +  G++L ++    N   +  
Sbjct:    49 HFWNYAFPHLQMIFLIISFLWQFLHFFLRRLGMIRFTSHMLTGVLLSKSFLKENSAARR- 107

Query:   125 LFS--DTSLGTLDLVATFGYILFQFLTGVKMDVSMIQXXXXXXXXXXXXXXXXXXXXXAA 182
              FS  D       L A   Y++F FL GVKMD  +I+                     + 
Sbjct:   108 FFSTEDYKEIVFSLTAACSYMMFWFLMGVKMDTGLIRTTGRKAITIGLSSVLLSTLVCSV 167

Query:   183 ALEKMSRILGIGMED----KMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCA 238
                   R +G    D     ++  V+  +  LS FP +  L+ +LR+ NSELGRL +S A
Sbjct:   168 IFFGNLRDVGTKNSDHTLNSLEYVVIYSIQCLSSFPVVGNLLFELRLQNSELGRLAISSA 227

Query:   239 LVSEMIGLILTRSAIW----------IASIYHAPLHSAYRNL---GIMXXXXXXXXXXXR 285
             ++S+    IL    I+          + S++   + +  R L   GI+           R
Sbjct:   228 VISDFSTSILASVLIFMKELKDEQTRLGSVFIGDVIAGNRPLMRAGIVVLFVCIAIYVFR 287

Query:   286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLG 345
             P M +++KQTP G+PV ++++  II++  G+  +++   Q ++ GPF+ GLAVP GPPLG
Sbjct:   288 PLMFYIIKQTPSGRPVKAIYLSTIIVMVSGSAILANWCKQSIFMGPFILGLAVPHGPPLG 347

Query:   346 SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTXXXXXXXXXXXXXTTMI 405
             SA+++K +  + G F+P  + S+S   ++S +    + L                 TT +
Sbjct:   348 SAIIQKYESAIFGTFLPFFIASSSTEIDISAL-FGWEGLNGIILIMVTSFVVKFIFTT-V 405

Query:   406 PPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPI 465
             P L+  +P  D FAL+LIMS KGI E+  Y ++    S+  + F+   + I + + IIP 
Sbjct:   406 PALFYGMPMEDCFALSLIMSFKGIFELGAYALAYQRGSVRPETFTVACLYITLNSAIIPP 465

Query:   466 LVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLV 525
             ++++LYDPSR YAGY+KRN MQH K + ELRIL+CIYR D+I  +I  L+A CP R S V
Sbjct:   466 ILRYLYDPSRMYAGYEKRN-MQHLKPNSELRILSCIYRTDDISPMINLLEAICPSRESPV 524

Query:   526 TVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAI 585
               YVLHL++L G+A P+FISHK+Q +     SYS NV++SF+ F +  +G+  V  +TA+
Sbjct:   525 ATYVLHLMELVGQANPIFISHKLQTRRTEETSYSNNVLVSFEKFRKDFYGSVFVSTYTAL 584

Query:   586 SPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGS-IESDDNTKRALNCSVLERAPCSVG 644
             S P  MH D+CMLAL+   S+++LPFH+ W  DGS + S++N  R LN SVL+ APCSVG
Sbjct:   585 SMPDTMHGDICMLALNNTTSLILLPFHQTWSADGSALISNNNMIRNLNKSVLDVAPCSVG 644

Query:   645 ILIDRGRIGRF-ISSELSL--G-----SSFRVAMIFLGGSDDREALTLAKRMSQNTSINL 696
             + + R   GR  ISS      G     SS+ + MIFLGG DDREA+TLA RM+++  IN+
Sbjct:   645 VFVYRSSSGRKNISSGRKTINGTVPNLSSYNICMIFLGGKDDREAVTLATRMARDPRINI 704

Query:   697 TVFRFIVKTDEMISTN--WEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQS 754
             T+ R I  TDE    N  W+K+LD E+L++VK  +N    + Y  + + +  ET + ++S
Sbjct:   705 TIVRLIT-TDEKARENTVWDKMLDDELLRDVK--SNTLVDIFYSEKAIEDAAETSSLLRS 761

Query:   755 VVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED 798
             +V  +D+ IVGR +   +  T GL+   EF ELGI+G+ L ++D
Sbjct:   762 MVSDFDMFIVGRGNGRTSVFTEGLEEWSEFKELGIIGDLLTSQD 805

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2205165 ATCHX5 [Arabidopsis thaliana (taxid:3702)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 283/795 (35%), Positives = 431/795 (54%)

Query:    35 GYNLS---SRFCMPVPPYVNSNGIWQFIGKA--GNHPWDASLPRLELQIIVAFAVTHACH 89
             GY  S   S+FC  +P  VNS G+W+ +     G   WD SLP LE  I++   +    +
Sbjct:    24 GYGFSEDGSKFCEQIPILVNSFGVWEKLDLPIRGMKIWDYSLPHLESVIVLVLCLWQFFY 83

Query:    90 FVLKRFGIPM--IASQITGGLILGQA--IPGLNRYYKHVLF-SDTSLGTLDLVATFGYIL 144
               LK+ G+P+  I S +  G  L Q   +P  +   +H+LF  DT     + +  F ++ 
Sbjct:    84 LSLKKIGLPVPKITSMMIAGAALSQTNLLPN-DWTIQHILFPDDTRPKVPETLGGFAFVF 142

Query:   145 FQFLTGVKMDVSMIQXXXXXXXXXXXXXXXXXXXXXAAALEKMSRILGIGMEDKMKLWVV 204
             + F+ GVKMDV M++                          K+    G  +   M+   +
Sbjct:   143 YWFIEGVKMDVGMVRKTGTKVIVTGIATVILPIIAANMVFGKLRETGGKYLTG-MEYRTI 201

Query:   205 TVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLH 264
               + S+S F  I+ L+ DLRI +SE GR+ +S A+V++  G  +   A+     +     
Sbjct:   202 LFMQSISAFTGISRLLRDLRINHSEFGRIVISTAMVADGTGFGVNLFALVAWMDWRV--- 258

Query:   265 SAYRNLGIMXXXXXXXXXXXRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFG 324
             SA + +GI+           RPAM WV+K+TP+ +PV    I+ I++LA G  Y      
Sbjct:   259 SALQGVGIIGYVIFMVWVV-RPAMFWVIKRTPQERPVKECFIYIILILAFGGYYFLKEIH 317

Query:   325 QHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTN-------LSDI 377
                  GPF+ GL VP GPPLGS LVEK +   +G+ +PL +  + ++ +       +  +
Sbjct:   318 MFPAVGPFLLGLCVPHGPPLGSQLVEKFESFNTGILLPLFLFFSMLQIDGPWLANQIGQL 377

Query:   378 KLLDDNLAKSTXXXXXXXXXXXXXTTMIPPLYCKVPKRDAFALALIMSTKGIVEIS--TY 435
             +  D  L ++              + MIP L  K+P  D+F +ALI+S KGIVE+    Y
Sbjct:   378 RHFDGQLYEALTIIIVVFVAKIIFS-MIPALLAKMPLTDSFVMALILSNKGIVELCYFLY 436

Query:   436 NISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGEL 495
              +  N+  L  + F+ +   ILV++ I P+L+ +LYD S+++  +QKRN+M   K   EL
Sbjct:   437 GVESNV--LHVKSFTIMATMILVSSTISPVLIHYLYDSSKRFISFQKRNLMS-LKLGSEL 493

Query:   496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSN 555
             + L CI++ D+I  +I  L  S P   S ++ YV+HL++L G   P+FISH+MQK    N
Sbjct:   494 KFLVCIHKADHISGMINLLAQSFPLHESTISCYVIHLVELVGLDNPVFISHQMQKAEPGN 553

Query:   556 RSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKW 615
             RSYS NV+++F  F+   W +  +  FT IS P+ MH+++  LALDK AS ++LPFH  W
Sbjct:   554 RSYSNNVLIAFDNFKHY-WKSISLELFTCISNPRYMHQEIYSLALDKQASFLMLPFHIIW 612

Query:   616 FIDGS-IESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLG 674
              +D + + SDD  +R  N +VL +APCSVGI + R ++   +S++ S   SF V  IF+G
Sbjct:   613 SLDQTTVVSDDVMRRNANLNVLRQAPCSVGIFVHRQKL---LSAQKS-SPSFEVCAIFVG 668

Query:   675 GSDDREALTLAKRMSQNTSINLTVFRFI-VKTDEMISTNWEKVLDSEVLKEVKPENN--F 731
             G DDREAL L ++M +N ++NLTV + I  K D M +T W+++LDS  +KEV   NN   
Sbjct:   669 GKDDREALALGRQMMRNPNVNLTVLKLIPAKMDGM-TTGWDQMLDSAEVKEVLRNNNNTV 727

Query:   732 NQR--VKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGI 789
              Q   V+YV E VN+G +T   + S+   +DL +VGR     T   S L    EF ELG+
Sbjct:   728 GQHSFVEYVEETVNDGSDTSTLLLSIANSFDLFVVGRSAGVGTDVVSALSEWTEFDELGV 787

Query:   790 VGNCLVTEDLPGRYS 804
             +G+ LV++D P R S
Sbjct:   788 IGDLLVSQDFPRRGS 802

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
 Identities = 276/796 (34%), Positives = 440/796 (55%)

Query:    39 SSRFCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIP 98
             +S  C   P  + +NG+WQ     G++P D SLP   LQ+ +   VT    F+LK F  P
Sbjct:    11 ASIICY-APSMITTNGVWQ-----GDNPLDFSLPLFVLQLTLVVVVTRFFVFILKPFRQP 64

Query:    99 MIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMI 158
              + S+I GG++LG ++ G +  + H +F   S+  L+ +A  G + F FL GV+MD+ ++
Sbjct:    65 RVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMDIMVV 124

Query:   159 QXXXXXXXXXXXXXXXXXXXXXAAALEKMSRI---LGIGMEDKMKLWVVTVVHSLSRFPS 215
             +                     AA    M R    LG G      +  + V  S++ FP 
Sbjct:   125 RKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSEDHLGQGTY----ILFLGVALSVTAFPV 180

Query:   216 IACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMXX 275
             +A ++++L++IN+E+GR+ +S ALV++M   IL   AI +A        +++ +L +M  
Sbjct:   181 LARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALAESDK----TSFASLWVMIS 236

Query:   276 XXXXXXX---XXRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPF 332
                         RP + W++++TPEG+  +  HI  I+   + +G+I+D  G H  FG F
Sbjct:   237 SAVFIAVCVFVVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAF 296

Query:   333 VFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTXXXX 392
             VFGL +P GP LG  L+EKL+  VSGL +PL    + ++TN++ I+     L  +     
Sbjct:   297 VFGLVIPNGP-LGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWL--TLFLVI 353

Query:   393 XXXXXXXXXTTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFL 452
                       T+I   +  +P R+   L L+++TKG+VE+   N+ ++ + L D+ F+ +
Sbjct:   354 FLACAGKVIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATM 413

Query:   453 T-VEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAII 511
               V +++T +I PI V  LY P +K   Y++R I Q +K   ELR+L C++ P N+P II
Sbjct:   414 VLVALVMTGVITPI-VTILYKPVKKSVSYKRRTIQQ-TKPDSELRVLVCVHTPRNVPTII 471

Query:   512 KFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQK--KTVSNRSY--SENVILSFK 567
               L+AS P + S + +YVLHL++L GRA+ + I H  +K  +   NR+   S+++I +F+
Sbjct:   472 NLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFE 531

Query:   568 LFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNT 627
              +E+ +     V P TAISP   MHEDVC LA DK  S +++PFH++  +DG +ES +  
Sbjct:   532 NYEQ-HAAFVAVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPA 590

Query:   628 KRALNCSVLERAPCSVGILIDRGRIG--RFISSELSLGSSFRVAMIFLGGSDDREALTLA 685
              R +N ++LE +PCSVGIL+DRG  G  R  S+ +SL    +VA++F GG DDREAL  A
Sbjct:   591 YRLVNQNLLENSPCSVGILVDRGLNGATRLNSNTVSL----QVAVLFFGGPDDREALAYA 646

Query:   686 KRMSQNTSINLTVFRFIVKTDEMIS-----TN------------WEKVLDSEVLKEVKPE 728
              RM+Q+  I LTV RFI   DE  +     TN             ++ LD + +   + E
Sbjct:   647 WRMAQHPGITLTVLRFIHDEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAE 706

Query:   729 NNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELG 788
             N   + + Y+ ++V+ G+ET+A ++S+   +DL IVGR +   +P T+GL    E PELG
Sbjct:   707 NAEYESIVYIEKLVSNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPELG 766

Query:   789 IVGNCLVTEDLPGRYS 804
              +G+ L + D     S
Sbjct:   767 AIGDLLASSDFAATVS 782

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006885 "regulation of pH" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2082102 CHX10 "cation/H+ exchanger 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 213/604 (35%), Positives = 338/604 (55%)

Query:   204 VTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPL 263
             + +  S    PS   ++ +L+IINSELGRL LS  ++++++G+     A   A+  H   
Sbjct:   176 IVITQSSILLPSTTYILLELKIINSELGRLALSACVINDILGIFSMIVASIQATYIHVSH 235

Query:   264 HSAYRNLGIMXXXXXXXXXXXRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLF 323
              +AYR+   +           +P + WV+ +TPE KPV  ++IH +I+ AL +      F
Sbjct:   236 ATAYRDTVAVIIFFLVVFLVFKPMVQWVIDRTPEDKPVEDMYIHAVIITALASAAYFVFF 295

Query:   324 GQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDN 383
                   GP + G+ +P GPPLGSAL  K + +   +F+P+ +T ++MR + + I L   N
Sbjct:   296 NMKYILGPLMIGIIIPEGPPLGSALEAKFERLTMNVFLPISITFSAMRCDGARI-LSQFN 354

Query:   384 LAKSTXXXXXXXXXXXXXTTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIES 443
                                 + P LY K+P  ++ A++ I+S K   +   Y    +   
Sbjct:   355 DIFFNIFLTFLILVIKLVACLAPCLYYKLPLSESLAVSFILSYKSFADFVLYEAVLDDTY 414

Query:   444 LTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYR 503
             ++   +SFL +  L+ A I+P +++ +YDP RKY  YQKR+I+ H + + +LRIL C+++
Sbjct:   415 ISQATYSFLILYSLLNAGIVPTVLRRMYDPRRKYVNYQKRDIL-HLERNSDLRILTCLHK 473

Query:   504 PDNIPAIIKFLQA-SCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENV 562
             P+N+   I FLQ  S P     + V VLHL+ L G+  P+ +SH  + K ++  SY    
Sbjct:   474 PENVSETIAFLQLLSSPNLDFPIAVTVLHLVKLVGQINPIIVSHDKKLKRLNKDSYIHTA 533

Query:   563 ILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIE 622
              L+F+ F  ++  +  V  FTA S   LMHED+C LALDK  S++V+P  RKW +DG  E
Sbjct:   534 NLAFRQFVLESLESVTVTTFTAFSHENLMHEDICTLALDKTTSMIVVPSGRKWTVDGLFE 593

Query:   623 SDDNTKRALNCSVLERAPCSVGILIDRGRIGR--FISSELSLGSSFRVAMIFLGGSDDRE 680
             SD+   R LN S+L+RAPCS+GIL+DRG+  R   ++S+        V ++F+GG DDRE
Sbjct:   594 SDNTAIRHLNQSLLDRAPCSIGILVDRGQFSRKSIVTSKKRY--IIDVGVLFIGGKDDRE 651

Query:   681 ALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVE 740
             AL+L KRM  N  I +TV R +   D  I ++W+ +LD+E LK++K   + N+ + Y+  
Sbjct:   652 ALSLVKRMKNNPRIRVTVIRLVF--DHEIESDWDYILDNEGLKDLKSTED-NKDIDYIER 708

Query:   741 MVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLP 800
             +V    E +  +Q +  +YDL++VGR  +  +   SGL    E PELG++G+ L   DL 
Sbjct:   709 IVTSSVEVVKAVQLLAEEYDLMVVGRDHDMTSQDLSGLMEWVELPELGVIGDLLAARDLS 768

Query:   801 GRYS 804
              + S
Sbjct:   769 SKVS 772

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

TAIR|locus:2205150 CHX6A "cation/H+ exchanger 6A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 262/799 (32%), Positives = 419/799 (52%)

Query:    30 GSENQGYNLSSRFCMPVPPYVNSNGIWQFIG-KAGNHPWDASLPRLELQIIVAFAVTHAC 88
             G  N+  N SS FC   P  VNS+GIW+ +  K G + W+  LP LE+ I   F +    
Sbjct:    16 GEFNEDKN-SSIFCESHPHIVNSHGIWEVMTFKRGMNFWEYPLPNLEILIFSTFFIWRLL 74

Query:    89 HFVLKRFG--IPMIASQITGGLILGQAIPGLNRYYKHVLF--SDTSLGTLDLVATFGYIL 144
                  + G  +P     +  G+ILGQ     N+ + H +F   D      + +  FG++L
Sbjct:    75 DISFNKIGLRVPRFTYMMIAGIILGQTCHFSNKSWIHDIFFPDDNRPKVAETLGAFGFVL 134

Query:   145 FQFLTGVKMDVSMIQXXXXXXXXXXXXXXXXXXXXXAAALEKMSRILGIGMEDKMKLWVV 204
             + FL GV MD  +                       +       R  G     +M+  ++
Sbjct:   135 YWFLKGVTMDAELPFRTEKRSSVIGFITVIIPLICGSLTFRYRER-RGDSSILRMEYRLI 193

Query:   205 TVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLH 264
               + S+S F SI  L+ DL+I +SE GR+ LS A+V++M+   +T    +  +IY+  L+
Sbjct:   194 IFLQSISAFTSIDTLLKDLQIKHSEFGRIALSGAMVTDMLAFGVT----FFNAIYYEKLY 249

Query:   265 SAYRNLGIMXXXXXXXXXXXRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFG 324
                + +G             RPAM WV+KQTPEG+PV   ++++I  +A         F 
Sbjct:   250 GFMQTVGFCLFVVVMICVV-RPAMYWVIKQTPEGRPVKDFYLYSIFGIAFAC---FTFFN 305

Query:   325 QHVY-FGP---FVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNL------ 374
             + ++ FGP   FVFGL VP G PLG+ L++K +    G  +PL  +   M+ +L      
Sbjct:   306 KVIHLFGPAGSFVFGLTVPNGYPLGTTLIQKFESFNLGSILPLFGSLTMMQVDLLRLFKE 365

Query:   375 -SDIKLLDDNLAKSTXXXXXXXXXXXXXTTMIPPLYCKVPKRDAFALALIMSTKGIVEIS 433
               D+  ++  + +               TT+    + K+P RD+FALAL++S KGI E++
Sbjct:   366 SGDLIRMEGQIYEVISFILLVNTTKFVVTTITAYAF-KMPLRDSFALALVLSNKGIFELA 424

Query:   434 TYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASG 493
              Y  +  ++ +  ++F+ L    L+ +I IP+L++ ++DP++++  Y+KRN+    K   
Sbjct:   425 YYTYAVELKLIRPEVFTILAAYTLLNSIFIPMLLELVHDPTKRFRCYRKRNL-GILKDGA 483

Query:   494 ELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTV 553
              L+ L C+YRPD+I ++   L+   P + S +   +LHL++L G+A P+FISH++QK   
Sbjct:   484 ALQCLMCVYRPDHITSMTDLLETFSPSQDSPMACNILHLVELVGQANPMFISHQLQKPEP 543

Query:   554 SNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHR 613
              + S S+NVI+SF+ F+ + +    +  FT++S  + MHED+C LAL +  S++VLPFHR
Sbjct:   544 GSTSLSDNVIISFRGFQRQFFEYTSLDIFTSVSVSQHMHEDICWLALSRSLSLIVLPFHR 603

Query:   614 KWFIDGS--IESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMI 671
              W +D S  I +DDN  R LN +VL RAPCSVGI + R  I   + S ++   S ++ +I
Sbjct:   604 TWSVDRSTVISNDDNL-RMLNVNVLRRAPCSVGIFVYRKPI---VESHMAKSHS-KICLI 658

Query:   672 FLGGSDDREALTLAKRMSQNTS-INLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKP--E 728
             F GG DDREAL +  RM        LT+ RFI K+ EM +  WE+     + + V     
Sbjct:   659 FNGGKDDREALAITNRMRLTEKRTRLTIIRFIPKSSEMDNDEWEQQQSINLKESVTSIVG 718

Query:   729 NNFNQ---RVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFP 785
             +N  +   +V Y+ + V++G ET   ++++   YDL IVG      T  TSG+    EF 
Sbjct:   719 SNIKENDAKVTYIDKAVSDGSETSRILRAMANDYDLFIVGSGSGIGTEATSGISEWTEFN 778

Query:   786 ELGIVGNCLVTEDLPGRYS 804
             ELG +G+ L + + P   S
Sbjct:   779 ELGPIGDLLASHEYPSSAS 797

GO:0005634 "nucleus" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

TAIR|locus:2172646 CHX9 "cation/H+ exchanger 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 248/748 (33%), Positives = 397/748 (53%)

Query:    70 SLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDT 129
             +LP LELQII+ F      H  L+R GIP   S I  GLILG  +  L  Y    L  D 
Sbjct:    48 ALPLLELQIILIFVCIVLSHMFLRRIGIPRFVSNILAGLILGPQLLDLLEYSSDRLSLDI 107

Query:   130 SLGT-LDLVATFGYILFQFLTGVKMDVSMI-QXXXXXXXXXXXXXXXXXXXXXAAALEKM 187
                  L+ VA  G ++F FL GVK +   + Q                     A    ++
Sbjct:   108 PGNVALEGVARLGLVMFTFLMGVKTNKRAVYQIGKRPIVIAVSSFFVTMISGLAFRNFRL 167

Query:   188 SRILGIGMEDKM---KLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMI 244
              ++  + M  ++   +  V+  + +++  P I  LV +L++ NSELGR+ +S A VS+ +
Sbjct:   168 DKVDPLYMPLRLAPTERSVIVSIQAVTLLPVITHLVYELKMSNSELGRIAISTAAVSDFL 227

Query:   245 GLILTRSAIWIASIYHAPLHSAYRNLGIMXXXXXXXXXXXRPAMLWVVKQTPEGKPVNSL 304
             G +      ++ +  +     A R++  +           +P    +V  TPEGKPV  +
Sbjct:   228 GFLTLVCISYVGTYRYVSPGIANRDIVALIILVLVILFIFKPMAQRIVDMTPEGKPVPKV 287

Query:   305 HIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLV 364
             +++  I+ A+ A     +F Q    G  + GLA+P GPPLGSAL  + + +V+ +F P+ 
Sbjct:   288 YLYVTILTAIAASIYLSVFNQMYILGALLVGLAIPDGPPLGSALEARFESLVTNIFFPIS 347

Query:   365 VTSASMRTNLSDIKLLDDNLAKSTXXXXXXXXXXXXXTTMIPPL-YCKVPKRDAFALALI 423
             +   +M+ ++       D+++ +              +  +P L +C++P R++  +A I
Sbjct:   348 IAVMAMKADVVRALYSFDDISFNILLLGLTVVVKWTAS-FVPCLIFCELPTRESVIIATI 406

Query:   424 MSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKR 483
             M+ KG V++  ++++    +L+   ++ + + +L+ A I+P ++K LYDP RKY GY KR
Sbjct:   407 MNYKGFVDLCFFDVALRRRNLSRATYTVMIIYVLLNAGILPTIIKALYDPKRKYIGYVKR 466

Query:   484 NIMQHSKASGELRILACIYRPDNIPAIIKFLQA-SCP-----KRGSLVTVYVLHLIDLRG 537
             +IM H K + +L+IL C+++PDNI   I  L+  S P     K   ++ V  LHL+ L G
Sbjct:   467 DIM-HLKTNSDLKILTCLHKPDNISGAISLLELLSSPLNNDNKDRGVIAVTALHLVKLAG 525

Query:   538 RAAPLFISH-KMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVC 596
             R  P+ I H K  K  +   SY + ++L+F  F+++NW +  V  FTA S   LM +D+C
Sbjct:   526 RTFPILIPHDKRSKARLLQNSYIQTMMLAFTEFQQENWESTTVSSFTAYSHENLMDQDIC 585

Query:   597 MLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFI 656
              LALD L S++++P  RKW  DG  ESDD   R +N S+L+ APCSVGIL  RG    + 
Sbjct:   586 NLALDHLTSMIIVPSGRKWSPDGEYESDDIMIRRVNESLLDLAPCSVGILNYRG----YN 641

Query:   657 SSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKV 716
               +    S   V +IF+GG DDREAL+LAK M QN+ + LTV RF+   +   S NW+ +
Sbjct:   642 KGKKKTNSIINVGVIFIGGKDDREALSLAKWMGQNSRVCLTVIRFLSGQELDKSKNWDYL 701

Query:   717 LDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTS 776
             +D EVL ++K   +      Y+ ++VN G      ++ V   +DL+IVGR     +   +
Sbjct:   702 VDDEVLNDLKATYSLANNFNYMEKVVNGGPAVATTVRLVAEDHDLMIVGRDHEDYSLDLT 761

Query:   777 GLDRCREFPELGIVGNCLVTEDLPGRYS 804
             GL +  E PELG++G+ L ++DL  R S
Sbjct:   762 GLAQWMELPELGVIGDLLASKDLRARVS 789

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

TAIR|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 214/743 (28%), Positives = 387/743 (52%)

Query:    63 GNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYK 122
             G+ P   ++P + LQ+ V    +   + +LK     MI++Q+  G+ILG ++ G +  Y 
Sbjct:    42 GSDPLKYAMPLMLLQMSVIIITSRLLYRLLKPLKQGMISAQVLAGIILGPSLFGQSSAYM 101

Query:   123 HVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQXXXXXXXXXXXXXXXXXXXXXAA 182
              +    +   TL  ++  G+ +  FL G+++D S+I+                       
Sbjct:   102 QMFLPISGKITLQTLSNLGFFIHLFLLGLRIDASIIRKAGSKAILIGTASYALPFSLGNL 161

Query:   183 ALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSE 242
              +  +     +  +    +  V  +++++ FP    ++++L I+NS+LGRL  +C++V E
Sbjct:   162 TVLFLKNTYNLPPDVVHCISTVISLNAMTSFPVTTTVLAELNILNSDLGRLATNCSIVCE 221

Query:   243 MIGLILTRSAIWIASIYHAPLHSAYRNLGIMXXXXXXXXXXXRPAMLWVVKQTPEG-KPV 301
                 I+  + ++   +    L S +  + +            RPA++W+ ++        
Sbjct:   222 AFSWIV--ALVFRMFLRDGTLASVWSFVWV-TALILVIFFVCRPAIIWLTERRSISIDKA 278

Query:   302 NSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFI 361
               +    IIM+ L     S++ G H  FG F  G+++P GPPLG+ L  KL+   + L +
Sbjct:   279 GEIPFFPIIMVLLTISLTSEVLGVHAAFGAFWLGVSLPDGPPLGTGLTTKLEMFATSLML 338

Query:   362 PLVVTSASMRTNLSDIKLLDDNLAKSTXXXXXXXXXXXXXTTMIPPLYCKVPKRDAFALA 421
             P  ++ + ++TN     ++ ++  K                T     YC +   DAF+LA
Sbjct:   339 PCFISISGLQTNFF---IIGESHVKIIEAVILITYGCKFLGTAAASAYCNIQIGDAFSLA 395

Query:   422 LIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQ 481
             L+M  +G++EI T  + ++ + L  + F+ L + +L+   I   LV  LYDPS++Y    
Sbjct:   396 LLMCCQGVIEIYTCVMWKDEKVLNTECFNLLIITLLLVTGISRFLVVCLYDPSKRYRSKS 455

Query:   482 KRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAP 541
             KR I+   + + + R+L C+Y  +N+P+++  L+AS P R S ++V+ LHL++L+GRA  
Sbjct:   456 KRTILDTRQRNLQFRLLLCVYNVENVPSMVNLLEASYPSRFSPISVFTLHLVELKGRAHA 515

Query:   542 LFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALD 601
             + + H    K   N   S +++  F+ FE++N GT     FTA +P   +++D+C LALD
Sbjct:   516 VLVPHHQMNKLDPNTVQSTHIVNGFQRFEQQNQGTLMAQHFTAAAPFSSINDDICTLALD 575

Query:   602 KLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRI-GRFISSEL 660
             K A+++V+PFH+++ IDG+++  + + R +N +VLE+APCSVGI IDRG   GR   S L
Sbjct:   576 KKATLIVIPFHKQYAIDGTVDHVNPSIRNINLNVLEKAPCSVGIFIDRGETEGR--RSVL 633

Query:   661 SLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSE 720
                +   VA+IF+ G DD EAL  + R++++  +++T+  F  K+   +  N    ++SE
Sbjct:   634 MSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPEVSVTMIHFRHKSS--LQQNHVVDVESE 691

Query:   721 VLKE--VKPENNF---NQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQT 775
             + +   +    NF     ++ Y  E+V +G ET   I S+   +DLV+VGR  + E+   
Sbjct:   692 LAESYLINDFKNFAMSKPKISYREEIVRDGVETTQVISSLGDSFDLVVVGRDHDLESSVL 751

Query:   776 SGLDRCREFPELGIVGNCLVTED 798
              GL    E PELG++G+   + D
Sbjct:   752 YGLTDWSECPELGVIGDMFASSD 774

GO:0005886 "plasma membrane" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 212/740 (28%), Positives = 376/740 (50%)

Query:    64 NHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKH 123
             ++P   +LP L LQ+ V    +     VL+     MI++Q+  G++LG +  G N  Y +
Sbjct:    45 SNPLKYALPLLLLQMSVIIVTSRLIFRVLQPLKQGMISAQVLTGVVLGPSFLGHNVIYMN 104

Query:   124 VLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQXXXXXXXXXXXXXXXXXXXXXAAA 183
             +         +  ++  G+++  FL G+K+D S+I+                        
Sbjct:   105 MFLPAGGKIIIQTLSNVGFVIHLFLLGLKIDGSIIRKAGSKAILIGTASYAFPFSLGNLT 164

Query:   184 LEKMSRILGIGMEDKMKLWVVTV-VHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSE 242
             +  +S+ +G+   D +      + + S++ FP    ++++L I+NSELGRL   C++V E
Sbjct:   165 IMFISKTMGLP-SDVISCTSSAISLSSMTSFPVTTTVLAELNILNSELGRLATHCSMVCE 223

Query:   243 MIGLILTRSAIWIASIY--HAPLHSAYRNLGIMXXXXXXXXXXXRPAMLWVVKQTPEGKP 300
             +    +  +     ++Y     + S Y  L ++           RP ++W+ ++  +   
Sbjct:   224 VCSWFVALAF----NLYTRDRTMTSLYA-LSMIIGLLLVIYFVFRPIIVWLTQRKTKSMD 278

Query:   301 VNSLHIHNIIMLALGAGYIS-DLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGL 359
                +     ++L L    +S +  G H  FG F  G+++P GPPLG+ L  KL+   S L
Sbjct:   279 KKDVVPFFPVLLLLSIASLSGEAMGVHAAFGAFWLGVSLPDGPPLGTELAAKLEMFASNL 338

Query:   360 FIPLVVTSASMRTNLSDIKLLDDNLAKSTXXXXXXXXXXXXXTTMIPPLYCKVPKRDAFA 419
             F+P  +  + ++TN  +I    ++                   T     YC+    DA  
Sbjct:   339 FLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGCKFLGTAAASAYCQTQIGDALC 398

Query:   420 LALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAG 479
             LA +M  +GI+E+ T  + ++ + +  + F+ + + IL    I   LV +LYDPS++Y  
Sbjct:   399 LAFLMCCQGIIEVYTTIVWKDAQVVDTECFNLVIITILFVTGISRFLVVYLYDPSKRYKS 458

Query:   480 YQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRA 539
               KR I+   + + +LR+L  +Y  +N+P+++  L+A+ P R + ++ + LHL++L+GRA
Sbjct:   459 KSKRTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTRFNPISFFTLHLVELKGRA 518

Query:   540 APLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLA 599
               L   H    K   N + S +++ +F+ FE+K  G      FTA +P   ++ D+C LA
Sbjct:   519 HALLTPHHQMNKLDPNTAQSTHIVNAFQRFEQKYQGALMAQHFTAAAPYSSINNDICTLA 578

Query:   600 LDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRI-GRFISS 658
             LDK A+++V+PFH+++ IDG++   +   R +N +VL+ APCSV I IDRG   GR   S
Sbjct:   579 LDKKATLIVIPFHKQYAIDGTVGQVNGPIRTINLNVLDAAPCSVAIFIDRGETEGR--RS 636

Query:   659 ELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLD 718
              L   +   VAM+F+GG DD EAL L  RM++   +N+T+  F  K+  +   ++  + +
Sbjct:   637 VLMTNTWQNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMIHFRHKS-ALQDEDYSDMSE 695

Query:   719 SEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGL 778
               ++ + K       ++ YV E+V +G ET   I S+   YD+V+VGR  + E+    GL
Sbjct:   696 YNLISDFKSYAANKGKIHYVEEIVRDGVETTQVISSLGDAYDMVLVGRDHDLESSVLYGL 755

Query:   779 DRCREFPELGIVGNCLVTED 798
                 E PELG++G+ L + D
Sbjct:   756 TDWSECPELGVIGDMLTSPD 775

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IGI

GO:0015079 "potassium ion transmembrane transporter activity" evidence=IGI;IMP;IDA

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
 Identities = 207/682 (30%), Positives = 357/682 (52%)

Query:    45 PVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQI 104
             P P    SNG++Q     G +P + +LP L LQI +   +T    F+L+    P + ++I
Sbjct:     9 PGPMKATSNGVFQ-----GENPLEHALPLLILQICIVLLLTRLLAFLLRPLRQPRVIAEI 63

Query:   105 TGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQXXXXX 164
              GG++LG +  G +  + + +F   SL  LD +A  G I F FL G+++D   ++     
Sbjct:    64 VGGILLGPSALGKSTKFINTVFPPKSLTVLDTLANLGLIFFLFLVGLELDPKSLKRTGKR 123

Query:   165 XXXXXXXXXXXXXXXXAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLR 224
                                   +   +  G      L  + V  S++ FP +A ++++++
Sbjct:   124 ALSIALAGITLPFVLGIGTSFALRSSIADGASKAPFLVFMGVALSITAFPVLARILAEIK 183

Query:   225 IINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMXXXXXXXXXXX 284
             ++ +++G++ LS A V+++   IL   A+ ++    +PL S +  L              
Sbjct:   184 LLTTDIGKIALSAAAVNDVAAWILLALAVALSGEGSSPLTSLWVFLSGCGFVLFCIFVV- 242

Query:   285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL 344
             +P +  + K+ PEG+PVN L++   + + L A +++D  G H  FG FV G+  P     
Sbjct:   243 QPGIKLIAKRCPEGEPVNELYVCCTLGIVLAASFVTDFIGIHALFGAFVIGVIFPKEGNF 302

Query:   345 GSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTXXXXXXXXXXXXXTTM 404
              +ALVEK++ +VSGLF+PL   S+ ++TN++ I+    +                  T +
Sbjct:   303 ANALVEKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQ-SWGLLVLVIFNACFGKIIGTVL 361

Query:   405 IPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIP 464
             +  LYCKVP   + AL  +M+TKG+VE+   NI ++   L DQ+F+ + +  + T  +  
Sbjct:   362 VS-LYCKVPLDQSLALGFLMNTKGLVELIVLNIGKDRGVLNDQIFAIMVLMAIFTTFMTT 420

Query:   465 ILVKFLYDPSRKY--AGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCP-KR 521
              LV  +Y P +    A Y+ R + + ++++  L ++ C     NIP I+  ++AS    R
Sbjct:   421 PLVLAVYKPGKSLTKADYKNRTVEETNRSNKPLCLMFCFQSIMNIPTIVNLIEASRGINR 480

Query:   522 GSLVTVYVLHLIDLRGRAAPLFISHKMQK---------KTVSNRSYSENVILSFKLFEEK 572
                ++VY +HL++L  R++ + ++HK+++         K+ +N S S+ V+++F+ F  +
Sbjct:   481 KENLSVYAMHLMELSERSSAILMAHKVRRNGLPFWNKDKSENNSSSSDMVVVAFEAF--R 538

Query:   573 NWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALN 632
                   V P TAISP   +HED+C  A  K  ++V+LPFH+   +D + E+  N  R +N
Sbjct:   539 RLSRVSVRPMTAISPMATIHEDICQSAERKKTAMVILPFHKHVRLDRTWETTRNDYRWIN 598

Query:   633 CSVLERAPCSVGILIDRGRIG--RFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQ 690
               V+E +PCSV IL+DRG  G  R  SS+ SL     + ++F GG+DDREAL  A RM++
Sbjct:   599 KKVMEESPCSVAILVDRGLGGTTRVASSDFSL----TITVLFFGGNDDREALAFAVRMAE 654

Query:   691 NTSINLTVFRFIVKTDEMISTN 712
             +  I+LTV RFI  +DE    N
Sbjct:   655 HPGISLTVVRFI-PSDEFKPEN 675

GO:0005634 "nucleus" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006885 "regulation of pH" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFB8	CHX3_ARATH	No assigned EC number	0.3753	0.9239	0.9160	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	815
PLN03159	832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	1e-177
COG0475	397	COG0475, KefB, Kef-type K+ transport systems, memb	3e-33
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	1e-31
TIGR00932	273	TIGR00932, 2a37, transporter, monovalent cation:pr	1e-19
pfam13118	126	pfam13118, DUF3972, Protein of unknown function (D	0.003

>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional

 Score =  531 bits (1370), Expect = e-177
 Identities = 296/792 (37%), Positives = 460/792 (58%), Gaps = 47/792 (5%)

Query: 47  PPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITG 106
           P  + +NGIWQ     G++P D SLP   LQ+ +    T    F+LK F  P + S+I G
Sbjct: 22  PMMITTNGIWQ-----GDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILG 76

Query: 107 GLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSL 166
           G+ILG ++ G +  + + +F   S+  L+ +A  G + F FL GV+MD+S+I++TGKK+L
Sbjct: 77  GVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKAL 136

Query: 167 FTGLLTLLIPFLLGAA---ALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDL 223
              +  + +PF +G A      ++SR +  G      +  + V  S++ FP +A +++++
Sbjct: 137 AIAIAGMALPFCIGLAFSFIFHQVSRNVHQG----TFILFLGVALSVTAFPVLARILAEI 192

Query: 224 RIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFV 283
           ++IN+ELGR+ +S ALV++M   IL   AI +A      L S +  L   V ++L   +V
Sbjct: 193 KLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLS-SVAFVLFCFYV 251

Query: 284 VRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPP 343
           VRP + W++++TPEG+  +  +I  I+   + +G+I+D  G H  FG FVFGL +P G P
Sbjct: 252 VRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-P 310

Query: 344 LGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVV-LAKVAT 402
           LG  L+EKL+  VSGL +PL    + ++TN++ I            V+V ++    K+  
Sbjct: 311 LGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKI---QGPATWGLLVLVIIMASAGKIMG 367

Query: 403 TMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFL-TVEILVTAI 461
           T+I   +  +P R+   L  +M+TKG+VE+   N+ R+ E L D+ F+ +  V + +TA+
Sbjct: 368 TIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTAL 427

Query: 462 IIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKR 521
           I P+ V  +Y P+R+  GY++R I Q SK   ELR+L C++ P N+P II  L+AS P +
Sbjct: 428 ITPV-VTVVYRPARRLVGYKRRTI-QRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTK 485

Query: 522 GSLVTVYVLHLIDLRGRAAPLFISHKMQK--KTVSNRS--YSENVILSFKLFEEKNWGTA 577
            S + +YVLHL++L GRA+ + I H  +K  +   NR+   S+++I +F+ +E+ + G  
Sbjct: 486 RSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ-HAGCV 544

Query: 578 CVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLE 637
            V P TAISP   MHEDVC LA DK  S++++PFH++  +DG +E+ +   R +N +VL 
Sbjct: 545 SVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLA 604

Query: 638 RAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLT 697
            APCSVGIL+DRG  G   +   S   S  VA++F GG DDREAL  A RMS++  I LT
Sbjct: 605 NAPCSVGILVDRGLSGA--TRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLT 662

Query: 698 VFRFIVKTDEMISTNW-------------------EKVLDSEVLKEVKPENNFNQRVKYV 738
           V RFI   D   + +                    E+ LD E + E +  N  N+ + Y 
Sbjct: 663 VMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYT 722

Query: 739 VEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED 798
            ++V+ G+ET+A I+S+   +DL IVGR     +P T+GL    E PELG +G+ L + D
Sbjct: 723 EKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSD 782

Query: 799 LPGRYSVLVVQQ 810
                SVLVVQQ
Sbjct: 783 FAATVSVLVVQQ 794

Length = 832

>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

 Score =  132 bits (335), Expect = 3e-33
 Identities = 91/408 (22%), Positives = 168/408 (41%), Gaps = 30/408 (7%)

Query: 76  LQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLD 135
           LQ+++   V      + KR G+P +   +  G+ILG            +L    S   ++
Sbjct: 9   LQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWG---------LLLIIESSEIIE 59

Query: 136 LVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLL-IPFLLGAAALEKMSRILGIG 194
           L+A  G +   FL G++ D+  ++K G+          L  PFLLG   L      LGI 
Sbjct: 60  LLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLL------LGIL 113

Query: 195 MEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLIL----TR 250
               +    +    +LS    +  ++ +L ++ +  G+L L   +  ++  ++L      
Sbjct: 114 GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPA 173

Query: 251 SAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNII 310
            A   +      L      L  + + LL   +++ P    V K            I  ++
Sbjct: 174 LAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELF-----ILFVL 228

Query: 311 MLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASM 370
           +L LGA Y+++L G  +  G F+ GL +         L EK++P   GLFIPL   S  M
Sbjct: 229 LLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGM 288

Query: 371 RTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIV 430
                D+ +L +NL     ++VA+ +L K+    +        KR A  + L++   G  
Sbjct: 289 SL---DLGVLLENLL-LILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEF 344

Query: 431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYA 478
                 I+     +++ + + + +  ++T  I+P+L   L     K +
Sbjct: 345 AFVLAGIALGSA-ISEALLTAVVILSMITTPILPLLTPILLKRLLKKS 391

Length = 397

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score =  127 bits (321), Expect = 1e-31
 Identities = 85/394 (21%), Positives = 177/394 (44%), Gaps = 29/394 (7%)

Query: 78  IIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLV 137
           +++  A+        +R G+P +   I  G++LG +  GL      V         L+++
Sbjct: 3   LLLLLALLAGLLA--RRLGLPPVVGLILAGILLGPSGLGL------VEPDLD----LEVL 50

Query: 138 ATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMED 197
           A  G  L  FL G+++D+  ++K GK  L   LL +LIPFLLG         +LG     
Sbjct: 51  AELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLLGLLL-----ALLGGLGIP 105

Query: 198 KMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIAS 257
            ++  +     S +    +  ++ +   +N+ LG L L  +++++ + ++L    +   +
Sbjct: 106 LLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLL---A 162

Query: 258 IYHAPLHSAYRNLGIMVVYLLA---VVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLAL 314
           +      S    L ++ + +     ++ +V   +L ++ +   G     L +  ++ LAL
Sbjct: 163 LAGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSG--DRELEVLLVLALAL 220

Query: 315 GAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNL 374
            A  +++L G     G F+ GL +       + L EKL+P   GLF+PL   S  +  +L
Sbjct: 221 LAALLAELLGLSGILGAFLAGLVLS-NYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDL 279

Query: 375 SDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEIST 434
           S + L   +L     +++  ++L K+    +      +  R+A  +      +G V ++ 
Sbjct: 280 SSLLL---SLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLAL 336

Query: 435 YNISRNIESLTDQMFSFLTVEILVTAIIIPILVK 468
             I   +  +  ++++ L   +L+T ++ P+L K
Sbjct: 337 AAIGLQLGLIDRELYTLLVAVVLLTTLLKPLLKK 370

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family

 Score = 89.2 bits (222), Expect = 1e-19
 Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 19/278 (6%)

Query: 93  KRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK 152
           +R GIP +   +  G+++G +  GL    + V            +A FG IL  FL G++
Sbjct: 12  RRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNH----------LAEFGVILLMFLIGLE 61

Query: 153 MDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSR 212
           +D+  + K  K +   G+L +L+P +L    L     +LG+ +   +   V+ ++ +LS 
Sbjct: 62  LDLERLWKLRKAAFGVGVLQVLVPGVLLGLLL---GHLLGLALGAAV---VIGIILALSS 115

Query: 213 FPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGI 272
              +  ++ +  ++ +  G+  L   L  ++  + L      +A+       +    L  
Sbjct: 116 TAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVALALLLLK 175

Query: 273 MVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPF 332
           + +  L +V + R  +  V++ T E +P + L     ++L  G+ Y +DL G  +  G F
Sbjct: 176 VFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLSMALGAF 234

Query: 333 VFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASM 370
           + G+ +         L   L+P+  G+ +PL   S  M
Sbjct: 235 LAGVVLSES-EYRHKLESDLEPI-GGVLLPLFFISVGM 270

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 273

>gnl|CDD|205299 pfam13118, DUF3972, Protein of unknown function (DUF3972)

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 688 MSQNTSINLTVFRFIVKTDEMISTNWEKVLDS--EVLKEVKPENNF 731
           ++ + S  L    F+ KT   I    EKVLD+  E ++ +K EN F
Sbjct: 51  IAMDMSSVLLEPSFVEKTIGTILNLHEKVLDAKDETIEALKNENKF 96

This is a Proteobacterial family of unknown function. Some of the proteins in this family are annotated as being kinesin-like proteins. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	815
PLN03159	832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650	769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669	558	putative cation:proton antiport protein; Provision	100.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	100.0
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.96
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.95
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.92
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.92
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.89
PRK11175	305	universal stress protein UspE; Provisional	99.81
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.74
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.69
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	99.59
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.5
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.4
PRK15456	142	universal stress protein UspG; Provisional	99.36
PRK15005	144	universal stress protein F; Provisional	99.35
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	99.26
PRK09982	142	universal stress protein UspD; Provisional	99.25
PRK15118	144	universal stress global response regulator UspA; P	99.18
PF00582	140	Usp: Universal stress protein family; InterPro: IP	99.11
cd01987	124	USP_OKCHK USP domain is located between the N-term	99.08
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	99.07
PRK10116	142	universal stress protein UspC; Provisional	99.05
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	99.01
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	98.95
PRK11175	305	universal stress protein UspE; Provisional	98.92
cd00293	130	USP_Like Usp: Universal stress protein family. The	98.9
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	98.89
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	98.88
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	98.73
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.61
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	98.55
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.52
COG0589	154	UspA Universal stress protein UspA and related nuc	98.5
PRK09982	142	universal stress protein UspD; Provisional	98.39
PF00582	140	Usp: Universal stress protein family; InterPro: IP	98.34
cd01987	124	USP_OKCHK USP domain is located between the N-term	98.33
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.3
PRK15005	144	universal stress protein F; Provisional	98.22
PRK10116	142	universal stress protein UspC; Provisional	98.17
PRK15456	142	universal stress protein UspG; Provisional	98.15
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.15
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	97.96
PRK15118	144	universal stress global response regulator UspA; P	97.96
cd00293	130	USP_Like Usp: Universal stress protein family. The	97.93
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	97.79
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.63
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	97.3
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.25
TIGR00698	335	conserved hypothetical integral membrane protein.	97.23
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	97.14
COG0385	319	Predicted Na+-dependent transporter [General funct	97.02
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	97.01
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	96.93
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	96.65
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.61
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	96.55
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.48
COG3493	438	CitS Na+/citrate symporter [Energy production and	96.47
COG0589	154	UspA Universal stress protein UspA and related nuc	96.15
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	96.03
TIGR00841	286	bass bile acid transporter. Functionally character	95.86
PRK10490	895	sensor protein KdpD; Provisional	95.73
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	95.67
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.67
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	95.65
PRK10669	558	putative cation:proton antiport protein; Provision	95.62
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.54
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.53
cd01984	86	AANH_like Adenine nucleotide alpha hydrolases supe	95.48
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.48
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.47
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	95.42
COG2855	334	Predicted membrane protein [Function unknown]	95.37
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	95.18
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	94.96
PRK03818	552	putative transporter; Validated	94.87
PRK05326	562	potassium/proton antiporter; Reviewed	94.83
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	94.63
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	94.12
TIGR00698	335	conserved hypothetical integral membrane protein.	94.0
TIGR00930	953	2a30 K-Cl cotransporter.	93.34
PRK10490	895	sensor protein KdpD; Provisional	93.25
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	92.83
PLN03159	832	cation/H(+) antiporter 15; Provisional	92.62
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	92.35
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	92.33
COG2205	890	KdpD Osmosensitive K+ channel histidine kinase [Si	92.33
COG2855	334	Predicted membrane protein [Function unknown]	91.5
PRK04972	558	putative transporter; Provisional	91.42
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	91.36
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	91.02
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	90.93
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	90.67
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	90.53
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.27
COG2205	890	KdpD Osmosensitive K+ channel histidine kinase [Si	89.21
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	88.71
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	88.23
PF02040	423	ArsB: Arsenical pump membrane protein; InterPro: I	87.99
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	87.4
COG2985	544	Predicted permease [General function prediction on	85.73
PRK04288	232	antiholin-like protein LrgB; Provisional	84.7
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	83.83
PRK04972	558	putative transporter; Provisional	82.57
PRK15475	433	oxaloacetate decarboxylase subunit beta; Provision	81.76
PRK15476	433	oxaloacetate decarboxylase subunit beta; Provision	81.54
PRK15477	433	oxaloacetate decarboxylase subunit beta; Provision	81.54
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	81.36
TIGR01109	354	Na_pump_decarbB sodium ion-translocating decarboxy	81.24
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	80.11

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=100.00  E-value=5e-152  Score=1363.88  Aligned_cols=758  Identities=37%  Similarity=0.644  Sum_probs=691.5

Q ss_pred             ccccCCCccCcCCceeecccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccc
Q 047130           42 FCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYY  121 (815)
Q Consensus        42 ~c~~~~~~~~s~gi~~~~~~~g~~pl~~~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~  121 (815)
                      +|+. +.+.+|+|+|+     |+||++|++|++++|+++++++++++++++||+|||++++||++|+++||+++|.++.+
T Consensus        18 ~c~~-~~~~~s~g~~~-----g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~   91 (832)
T PLN03159         18 VCYA-PMMITTNGIWQ-----GDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVF   91 (832)
T ss_pred             cccc-CCCccCCcccc-----cCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhh
Confidence            5994 43579999999     99999999999999999999999999999999999999999999999999999999888


Q ss_pred             cccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHH
Q 047130          122 KHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKL  201 (815)
Q Consensus       122 ~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~  201 (815)
                      .+.+||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+++++++.. ...+.......
T Consensus        92 ~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~  170 (832)
T PLN03159         92 ANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFI  170 (832)
T ss_pred             hhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHH
Confidence            88999988888999999999999999999999999999999999999999999999999988887743 22111234567


Q ss_pred             HHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q 047130          202 WVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVV  281 (815)
Q Consensus       202 l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  281 (815)
                      +++|+++|.||+|+++++|+|+|+++|+.||+++++++++|+++|++++++.++...+. +....+|.++..++|++++.
T Consensus       171 l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~-~~~~~l~~~l~~~~f~~~~~  249 (832)
T PLN03159        171 LFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDS-TSLASLWVLLSSVAFVLFCF  249 (832)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999988876654322 22345677777788888889


Q ss_pred             HHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhH
Q 047130          282 FVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFI  361 (815)
Q Consensus       282 ~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~l  361 (815)
                      +++||++.|+.+|++++++.+|.++.++++++++++++++.+|+|+++|||++|+++|+ +|+++++.+|+++++.++|+
T Consensus       250 ~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lfl  328 (832)
T PLN03159        250 YVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLL  328 (832)
T ss_pred             HHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888999999999999999999999999999999999999998 47999999999999999999


Q ss_pred             HHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccc
Q 047130          362 PLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNI  441 (815)
Q Consensus       362 PlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~  441 (815)
                      |+||+++|+++|+..+.+...|.  .+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.
T Consensus       329 PlFFv~vGl~idl~~l~~~~~~~--~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~  406 (832)
T PLN03159        329 PLFFAISGLKTNVTKIQGPATWG--LLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQ  406 (832)
T ss_pred             HHHHHHhhheeeHHHhcCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence            99999999999998887553453  4566777889999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCccceeEEeeecCCChHHHHHHHHHhCCCC
Q 047130          442 ESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKR  521 (815)
Q Consensus       442 ~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~~~~~~~~r~i~~~~~~~~elrILv~i~~~~~~~~~i~la~~~~~~~  521 (815)
                      |+++++.|++++++++++|.+.+|++.++|||+|||..|++|++ |+.++++|+|||+|+|+++|++++++|++++++++
T Consensus       407 gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i-~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~  485 (832)
T PLN03159        407 EVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTI-QRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTK  485 (832)
T ss_pred             CccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhcccccccc-ccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             CCCceEEEEEeeeccCCCccchhhhhccccccC----CcccchHHHHHHHHHHHhcCcceEEEEEEEecCCCChhHHHHH
Q 047130          522 GSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVS----NRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCM  597 (815)
Q Consensus       522 ~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~----~~~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~  597 (815)
                      ++|.++|++||+|+++|++|++++|+.+++...    ...++|++.++|+.|++++ ++++++++|++||+++||+|||+
T Consensus       486 ~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~  564 (832)
T PLN03159        486 RSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCN  564 (832)
T ss_pred             CCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHH
Confidence            999999999999999999999999987543221    2345799999999999864 58999999999999999999999


Q ss_pred             HHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcccccccccccCCcceEEEEecCCcc
Q 047130          598 LALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSD  677 (815)
Q Consensus       598 ~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~I~~~f~gg~D  677 (815)
                      +|+|+++|+||+||||+|+.||.++++++.+|.+|+|||++|||||||+||||.  .+..+.+.....+||+++|+||||
T Consensus       565 ~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~--~~~~~~~~~~~~~~v~~~F~GG~D  642 (832)
T PLN03159        565 LAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGL--SGATRLASNQVSHHVAVLFFGGPD  642 (832)
T ss_pred             HHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCC--CccccccccccceeEEEEecCCcc
Confidence            999999999999999999999999999999999999999999999999999996  332222334557899999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEEEeeecCcccc-------------------ccchhhhhHHHHHHHhcccCCCCCCEEEE
Q 047130          678 DREALTLAKRMSQNTSINLTVFRFIVKTDEMI-------------------STNWEKVLDSEVLKEVKPENNFNQRVKYV  738 (815)
Q Consensus       678 dreAL~~a~rma~~~~v~ltvl~~~~~~~~~~-------------------~~~~~~~~d~~~l~~~~~~~~~~~~v~y~  738 (815)
                      |||||+||+|||+||++++||+||++++....                   .++.|+++||++++||+.++.+++++.|.
T Consensus       643 DREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~  722 (832)
T PLN03159        643 DREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYT  722 (832)
T ss_pred             hHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEE
Confidence            99999999999999999999999986532111                   13568889999999999998878899999


Q ss_pred             EEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEeeeccC
Q 047130          739 VEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQTT  814 (815)
Q Consensus       739 e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~~~~  814 (815)
                      |++|+||+|+++.+|+++++|||++|||+|+.+|++|+||+||+||||||+|||+|||+||.+++||||||||+.|
T Consensus       723 E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~~  798 (832)
T PLN03159        723 EKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVGT  798 (832)
T ss_pred             EEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeeccC
Confidence            9999999999999999999999999999998789999999999999999999999999999999999999999865

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-126  Score=1126.55  Aligned_cols=752  Identities=41%  Similarity=0.696  Sum_probs=687.4

Q ss_pred             ccCcCCceeecccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCC
Q 047130           49 YVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSD  128 (815)
Q Consensus        49 ~~~s~gi~~~~~~~g~~pl~~~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~  128 (815)
                      +.+++|+|+     |+||++|++|++++|+++++++++++++++||+|||++++||++||++||+.+|+++.+.+.+||.
T Consensus         4 ~~~~~g~~~-----~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~   78 (769)
T KOG1650|consen    4 KATSNGVFP-----GVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPK   78 (769)
T ss_pred             ccccCCccc-----CCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhccccc
Confidence            468999999     999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc----hHHHHHHH
Q 047130          129 TSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGME----DKMKLWVV  204 (815)
Q Consensus       129 ~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~----~~~~~l~i  204 (815)
                      ++...+++++.+|+.+++|+.|+|+|.+.++|++|++..+|+.++++|+..|..+...+.........    ...+..++
T Consensus        79 ~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (769)
T KOG1650|consen   79 SSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFI  158 (769)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHH
Confidence            89999999999999999999999999999999999999999999999999988887776433221111    12267888


Q ss_pred             HHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047130          205 TVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVV  284 (815)
Q Consensus       205 g~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~  284 (815)
                      ..++|.|+||+++++|.|+|++++|+||+++++++++|+++|.++++..+.......+.....|.+...++|++++.+++
T Consensus       159 ~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  238 (769)
T KOG1650|consen  159 LSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVV  238 (769)
T ss_pred             HHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeeh
Confidence            99999999999999999999999999999999999999999999988887765444345567888888999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhC-chhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHH
Q 047130          285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFG-QHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPL  363 (815)
Q Consensus       285 r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G-~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPl  363 (815)
                      ||.+.|+.||+|++++.++.|...+++.+++++.+++.++ +|+++|||+.|+++|++||+++.+.+|+|+++.++|+|+
T Consensus       239 ~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl  318 (769)
T KOG1650|consen  239 RPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPL  318 (769)
T ss_pred             hhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998 899999999999999999999999999999999999999


Q ss_pred             HHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccc
Q 047130          364 VVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIES  443 (815)
Q Consensus       364 FF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~  443 (815)
                      ||+.+|+++|+..+..   |.  .....+.+.+++|++++..++.++|+|+||++.+|++|++||.+|++.++.+++.|+
T Consensus       319 ~~~~~G~k~di~~i~~---~~--~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~  393 (769)
T KOG1650|consen  319 YFAISGLKTDISRINK---WG--ALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKI  393 (769)
T ss_pred             HHHhhccceeHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            9999999999998886   43  466777778899999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCccceeEEeeecCCChHHHHHHHHHhCCCCCC
Q 047130          444 LTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGS  523 (815)
Q Consensus       444 i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~~~~~~~~r~i~~~~~~~~elrILv~i~~~~~~~~~i~la~~~~~~~~~  523 (815)
                      ++++.|++++++++++|.++||+++.+|||.|++..|++|++ ||.++++|+||+.|+|++++++++++++|++.+++++
T Consensus       394 ~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i-~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~  472 (769)
T KOG1650|consen  394 LSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGI-QHLKPNSELRILTCLHGPENISGIINLLELSSGSLES  472 (769)
T ss_pred             cccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehh-hhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999999999999999999 9999999999999999999999999999999998878


Q ss_pred             CceEEEEEeeeccCCCccchhhhhcccc-ccC-CcccchHHHHHHHHHHHhcCcceEEEEEEEecCCCChhHHHHHHHHh
Q 047130          524 LVTVYVLHLIDLRGRAAPLFISHKMQKK-TVS-NRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALD  601 (815)
Q Consensus       524 ~~~v~~Lhlvel~~r~~~~~~~~~~~~~-~~~-~~~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e  601 (815)
                      |.+++++|++|+.+|+.|++++|+.+++ ... ....++++..+|+.|++.+.+.+.++++|+++|+++||+|||.+|.+
T Consensus       473 p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~  552 (769)
T KOG1650|consen  473 PLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALD  552 (769)
T ss_pred             CcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHh
Confidence            9999999999999999999999987665 332 23455688999999998544679999999999999999999999999


Q ss_pred             cCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcccccccccccCCcceEEEEecCCccHHHH
Q 047130          602 KLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREA  681 (815)
Q Consensus       602 ~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreA  681 (815)
                      +++++|++|||++|+.++.+++.+..+|.+|++|+++|||||||++|||.  .+....+.....++|+++|+||+|||||
T Consensus       553 ~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~--~~~~~~~~~~~~~~v~~lF~GG~DDrEA  630 (769)
T KOG1650|consen  553 KGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGL--RRSGVTQKRGSSYKVVVLFLGGKDDREA  630 (769)
T ss_pred             hCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCc--ccccceecccceeEEEEEecCChhhHHH
Confidence            99999999999999966689999999999999999999999999999972  1111112233678999999999999999


Q ss_pred             HHHHHHHhhCCCeEEEEEEeeecCccccc---cchhhhhHHHHHHHh-cccCCCCCCEEEE-EEEecCcHHHHHHHHhhC
Q 047130          682 LTLAKRMSQNTSINLTVFRFIVKTDEMIS---TNWEKVLDSEVLKEV-KPENNFNQRVKYV-VEMVNEGQETLAKIQSVV  756 (815)
Q Consensus       682 L~~a~rma~~~~v~ltvl~~~~~~~~~~~---~~~~~~~d~~~l~~~-~~~~~~~~~v~y~-e~~V~~g~~~~~~i~~~~  756 (815)
                      |++++||++||++++||+||...+...++   +++++.+|++..+++ +..+.++..+.|. |+.|++|.||.+.++++.
T Consensus       631 La~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~  710 (769)
T KOG1650|consen  631 LALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSIT  710 (769)
T ss_pred             HHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhc
Confidence            99999999999999999999976443332   367888888888888 6555556678888 699999999999999999


Q ss_pred             CCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEeeecc
Q 047130          757 PKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQT  813 (815)
Q Consensus       757 ~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~~~  813 (815)
                      ++|||++|||.++.+++.|+|+++|+||||||+|||+|+|+||.+++||||+|||++
T Consensus       711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~  767 (769)
T KOG1650|consen  711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY  767 (769)
T ss_pred             cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence            999999999999999999999999999999999999999999999999999999975

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=100.00  E-value=1.1e-47  Score=450.93  Aligned_cols=409  Identities=15%  Similarity=0.211  Sum_probs=328.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 047130           73 RLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK  152 (815)
Q Consensus        73 ~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle  152 (815)
                      .++.++.+++.++.++..++||+|+|+++|||++|+++||+++|.++          ..+.++.++++|++++||.+|+|
T Consensus         5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE   74 (621)
T PRK03562          5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE   74 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence            48899999999999999999999999999999999999999999864          24568999999999999999999


Q ss_pred             cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHH
Q 047130          153 MDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGR  232 (815)
Q Consensus       153 ~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~  232 (815)
                      +|++.+|+.+|+++.+|..++++|+++++.++++++.       +|..++++|.+++.||++++.++|+|+|+++|+.||
T Consensus        75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~-------~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~  147 (621)
T PRK03562         75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL-------RWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR  147 (621)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence            9999999999999999999999999988877766643       477899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCchhHHH
Q 047130          233 LGLSCALVSEMIGLILTRSAIWIASIYHA-PLHSAYRNLGIMVVYLLAV----VFVVRPAMLWVVKQTPEGKPVNSLHIH  307 (815)
Q Consensus       233 lals~a~v~D~~~~~ll~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~----~~v~r~~~~~l~~r~~~~~~~~e~~~~  307 (815)
                      .++++++++|+++|++++++..+...+.. +....++..+..++++++.    .++.+|+++|+.++     +.+|.+..
T Consensus       148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~  222 (621)
T PRK03562        148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTA  222 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHH
Confidence            99999999999999999887665432111 1111122222222222222    33445555554433     24678888


Q ss_pred             HHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130          308 NIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS  387 (815)
Q Consensus       308 ~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~  387 (815)
                      .+++++++++++++.+|+|+++|||++|+++++. +++++++++++++ .++|+|+||+++||++|+..+... .+   .
T Consensus       223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~-~~---~  296 (621)
T PRK03562        223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN-PL---R  296 (621)
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH-HH---H
Confidence            8899999999999999999999999999999996 6899999999999 699999999999999999887654 22   3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 047130          388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILV  467 (815)
Q Consensus       388 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv  467 (815)
                      ++.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++.++.+.|+++++.|+.+++++++|++++|++.
T Consensus       297 il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~  376 (621)
T PRK03562        297 ILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLL  376 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667899999999999999999999999999999999999999999999999999999999998888777776665


Q ss_pred             Hhhhccc--cccccccccccccccCCCccceeEEeeecCCChHHHHHHHH
Q 047130          468 KFLYDPS--RKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQ  515 (815)
Q Consensus       468 ~~ly~p~--~~~~~~~~r~i~~~~~~~~elrILv~i~~~~~~~~~i~la~  515 (815)
                      .. |++.  +++...  +.  +...++.+-|+++|-++. ....+.+.++
T Consensus       377 ~~-~~~~~~~~~~~~--~~--~~~~~~~~~~vII~G~Gr-~G~~va~~L~  420 (621)
T PRK03562        377 VL-LDRLEQSRTEEA--RE--ADEIDEQQPRVIIAGFGR-FGQIVGRLLL  420 (621)
T ss_pred             Hh-hhHHHHHHhhhc--cc--ccccccccCcEEEEecCh-HHHHHHHHHH
Confidence            44 5432  111111  11  111122356888887554 4444444443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=100.00  E-value=2.6e-47  Score=446.41  Aligned_cols=378  Identities=15%  Similarity=0.237  Sum_probs=324.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130           74 LELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM  153 (815)
Q Consensus        74 ~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~  153 (815)
                      ++..+.++++++.+++.++||+|+|++++||++|+++||+++|..+          ..+.++.++++|++++||.+|+|+
T Consensus         7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~   76 (558)
T PRK10669          7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF   76 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence            3567788899999999999999999999999999999999998753          246789999999999999999999


Q ss_pred             ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHH
Q 047130          154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRL  233 (815)
Q Consensus       154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~l  233 (815)
                      |++.+|+.++..+..++.++++|+++++++++.++.       ++..++++|+++|.||++++.++|+|+|+++++.||+
T Consensus        77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~  149 (558)
T PRK10669         77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW-------SLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI  149 (558)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence            999999998888888888989999888877766653       4678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh---cCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHH
Q 047130          234 GLSCALVSEMIGLILTRSAIWIASI---YHAPLH----SAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHI  306 (815)
Q Consensus       234 als~a~v~D~~~~~ll~v~~~~~~~---~~~~~~----~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~  306 (815)
                      ++++++++|+.+|+++++...+...   +..+..    ...+.++..+++++++.++.|++++|+.++.++.+ .+|.+.
T Consensus       150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~  228 (558)
T PRK10669        150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT  228 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence            9999999999999988877654321   111111    12345556667777788899999999999987664 678888


Q ss_pred             HHHHHHHHHHHHH-HHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHH
Q 047130          307 HNIIMLALGAGYI-SDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLA  385 (815)
Q Consensus       307 ~~~l~~~l~~~~i-~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~  385 (815)
                      ..++++++++++. ++.+|+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+++|+++|+..+.+. .+  
T Consensus       229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~-~~--  303 (558)
T PRK10669        229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ-PL--  303 (558)
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH-HH--
Confidence            8888888888864 6999999999999999999986 6788888777776 689999999999999999887654 22  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 047130          386 KSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPI  465 (815)
Q Consensus       386 ~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~  465 (815)
                       .+..++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+++++++++|++++|+
T Consensus       304 -~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~  382 (558)
T PRK10669        304 -AVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPV  382 (558)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             3455666788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccc
Q 047130          466 LVKFLYDPSR  475 (815)
Q Consensus       466 lv~~ly~p~~  475 (815)
                      +.++..+..+
T Consensus       383 l~~~~~~~~~  392 (558)
T PRK10669        383 LFTLLERYLA  392 (558)
T ss_pred             HHHHhhHHHH
Confidence            9888765433

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=100.00  E-value=3.3e-46  Score=437.89  Aligned_cols=411  Identities=16%  Similarity=0.215  Sum_probs=324.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130           74 LELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM  153 (815)
Q Consensus        74 ~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~  153 (815)
                      ++.++.+++.++.++..+++|+|+|++++||++|+++||+++|.++          ..+.+..++++|++++||.+|+|+
T Consensus         6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel   75 (601)
T PRK03659          6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLEL   75 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5778899999999999999999999999999999999999999864          235678999999999999999999


Q ss_pred             ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHH
Q 047130          154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRL  233 (815)
Q Consensus       154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~l  233 (815)
                      |++.+++.+|+++.+|..++++|+++++.+.++++.       +|..++++|++++.||++++.++|+|+|+++++.||+
T Consensus        76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~-------~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~  148 (601)
T PRK03659         76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF-------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL  148 (601)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence            999999999999999999999999877666555432       4788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHH
Q 047130          234 GLSCALVSEMIGLILTRSAIWIASIYHAP--LHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIM  311 (815)
Q Consensus       234 als~a~v~D~~~~~ll~v~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~  311 (815)
                      +++.++++|+.+++++++...+.......  .....+.++..++++++..++.+|+++|+.+.     +.+|.++..+++
T Consensus       149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~  223 (601)
T PRK03659        149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALL  223 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHH
Confidence            99999999999999988876654322211  01111111112222222234445555444332     256888999999


Q ss_pred             HHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHH
Q 047130          312 LALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVI  391 (815)
Q Consensus       312 ~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i  391 (815)
                      ++++++++++.+|+|+++|||++|+++++. +++++++++++++ .++|+|+||+++||++|+..+.+.  |.  .++.+
T Consensus       224 ~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~--~~--~il~~  297 (601)
T PRK03659        224 LVLGSALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH--LL--WVLIS  297 (601)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh--HH--HHHHH
Confidence            999999999999999999999999999996 6899999999998 699999999999999999888755  32  34556


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047130          392 VAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLY  471 (815)
Q Consensus       392 ~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly  471 (815)
                      +++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|++++|.+. .+|
T Consensus       298 ~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~-~~~  376 (601)
T PRK03659        298 VVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLM-KLI  376 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence            6667899999999999999999999999999999999999999999999999999999999888888886655555 455


Q ss_pred             cc--ccccccccccccccccCCCccceeEEeeecCCChHHHHHHHH
Q 047130          472 DP--SRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQ  515 (815)
Q Consensus       472 ~p--~~~~~~~~~r~i~~~~~~~~elrILv~i~~~~~~~~~i~la~  515 (815)
                      +|  ++++....+... .+...+.+-++++|-.+. -...+.+.+.
T Consensus       377 ~~~~~~~~~~~~~~~~-~~~~~~~~~~vII~G~Gr-~G~~va~~L~  420 (601)
T PRK03659        377 DKWLARRLNGPEEEDE-KPWVEDDKPQVIIVGFGR-FGQVIGRLLM  420 (601)
T ss_pred             HHHHHHhhcccccccc-ccccccccCCEEEecCch-HHHHHHHHHH
Confidence            44  333321111100 111112356888887544 4444444443

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-45  Score=409.36  Aligned_cols=380  Identities=22%  Similarity=0.354  Sum_probs=329.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 047130           73 RLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK  152 (815)
Q Consensus        73 ~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle  152 (815)
                      ..+.++.++++++.+.+.++||+|+|+++||+++|+++||..++...         +..+.++.++++|++++||.+|+|
T Consensus         6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~---------~~~~~i~~laelGvi~LlF~~GLE   76 (397)
T COG0475           6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLII---------ESSEIIELLAELGVVFLLFLIGLE   76 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccC---------CchHHHHHHHHHhHHHHHHHHHHC
Confidence            57889999999999999999999999999999999999995554432         467899999999999999999999


Q ss_pred             cChhHHHhcchh-hHHHHHHHHHHHHHHHHHHHHH-HHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChh
Q 047130          153 MDVSMIQKTGKK-SLFTGLLTLLIPFLLGAAALEK-MSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSEL  230 (815)
Q Consensus       153 ~d~~~l~~~~k~-~~~i~~~~~~ip~~~~~~~~~~-l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~  230 (815)
                      +|++.+||++|+ +...+..++..|+.++....+. ++.       ++..++++|.+++.||+++++++++|+|.++++.
T Consensus        77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-------~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~  149 (397)
T COG0475          77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL-------SLIAALFLGAALALSSTAIVLKILMELGLLKTRE  149 (397)
T ss_pred             cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------ChHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            999999999999 8888888889998887655443 322       4678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHH
Q 047130          231 GRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNII  310 (815)
Q Consensus       231 g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l  310 (815)
                      |++++++++++|+.+++++++...+...++.+....+..+....+|.++..+..|++.+|+.|+..+. +.+|....+++
T Consensus       150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l  228 (397)
T COG0475         150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVL  228 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence            99999999999999999999999886544433333455556666677666666788888888887654 35788999999


Q ss_pred             HHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHH
Q 047130          311 MLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAV  390 (815)
Q Consensus       311 ~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~  390 (815)
                      ++++.+++++|.+|+|+++|||++|+++++.....++++++++++.+++|+|+||+.+|+++|++.+...  +.  .+..
T Consensus       229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~--~~--~~l~  304 (397)
T COG0475         229 LLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN--LL--LILL  304 (397)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc--HH--HHHH
Confidence            9999999999999999999999999999998543379999999998779999999999999999999876  22  4677


Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130          391 IVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFL  470 (815)
Q Consensus       391 i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~l  470 (815)
                      ++.+.+++|.+++++.++.+|++.|++...|+.+.++|+++++.++.+.. +.++++.++..+.+++++|.+.+.+.+.+
T Consensus       305 ~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~  383 (397)
T COG0475         305 LVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPIL  383 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888899999999999999999999999999999999999999998887 67888999999999999888888888877


Q ss_pred             hccc
Q 047130          471 YDPS  474 (815)
Q Consensus       471 y~p~  474 (815)
                      ++..
T Consensus       384 ~~~~  387 (397)
T COG0475         384 LKRL  387 (397)
T ss_pred             HHHh
Confidence            7543

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=7.4e-40  Score=383.25  Aligned_cols=385  Identities=11%  Similarity=0.055  Sum_probs=321.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhh
Q 047130           71 LPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTG  150 (815)
Q Consensus        71 lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~G  150 (815)
                      +-.++++++++++++.+++.+++|+++|.+++++++|+++||+++|.++.        .+.+..+.++++|+++++|..|
T Consensus         4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~G   75 (562)
T PRK05326          4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGG   75 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCc
Confidence            34678999999999999999999999999999999999999999986541        2456789999999999999999


Q ss_pred             cccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhh-ccCh
Q 047130          151 VKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRI-INSE  229 (815)
Q Consensus       151 le~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l-l~s~  229 (815)
                      +|+|++.+|+.+++++.+++.++++|++++..+++++..      .+|..++++|+++++||++++.++++|+|+ ++++
T Consensus        76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g------~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~  149 (562)
T PRK05326         76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLG------LDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER  149 (562)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence            999999999999999999999999999885544444333      158899999999999999999999999996 7999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHH
Q 047130          230 LGRLGLSCALVSEMIGLILTRSAIWIASIYHAP-LHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHN  308 (815)
Q Consensus       230 ~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~  308 (815)
                      +++++.+++.+||.++++++.++..+...+..+ ....++.++..+++.+++++++++++.|+.+|....  .++.+..+
T Consensus       150 v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~  227 (562)
T PRK05326        150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPIL  227 (562)
T ss_pred             HHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHH
Confidence            999999999999999999887776654333211 122234445555666677788889999999987432  24567888


Q ss_pred             HHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHH
Q 047130          309 IIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKST  388 (815)
Q Consensus       309 ~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~  388 (815)
                      ++.+++++++++|.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|++.+.+. .+.  .+
T Consensus       228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-~~~--~l  304 (562)
T PRK05326        228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-ALP--AL  304 (562)
T ss_pred             HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH--HH
Confidence            899999999999999999999999999999998655555566777767899999999999999999887644 221  23


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccc-hhHHHHHHHHHHHHHHHHHHHH
Q 047130          389 AVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLT-DQMFSFLTVEILVTAIIIPILV  467 (815)
Q Consensus       389 ~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~-~~~~~~lv~~~ll~t~i~~~lv  467 (815)
                      .+.+++.+++|++++++.++.+++++||+..+||. ++||.++++++.++.+.++.+ +..|+++.+++++|+++.++.+
T Consensus       305 ~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl  383 (562)
T PRK05326        305 LLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTL  383 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhH
Confidence            33345567899999999999999999999999995 899999999999999999886 5678888899999999999999


Q ss_pred             Hhhhcccc
Q 047130          468 KFLYDPSR  475 (815)
Q Consensus       468 ~~ly~p~~  475 (815)
                      +.+.|+.+
T Consensus       384 ~~~a~~l~  391 (562)
T PRK05326        384 PWAARKLG  391 (562)
T ss_pred             HHHHHHcC
Confidence            88776544

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=100.00  E-value=1.4e-35  Score=317.23  Aligned_cols=271  Identities=22%  Similarity=0.348  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcc
Q 047130           83 AVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTG  162 (815)
Q Consensus        83 ~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~  162 (815)
                      +++.+++.++||+|+|.+++||++|+++||+++|.++          ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus         2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~   71 (273)
T TIGR00932         2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR   71 (273)
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4567789999999999999999999999999998764          245799999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHH
Q 047130          163 KKSLFTGLLTLLIP-FLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVS  241 (815)
Q Consensus       163 k~~~~i~~~~~~ip-~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~  241 (815)
                      |++..+++.++++| ++++..++++++.       ++..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~  144 (273)
T TIGR00932        72 KAAFGVGVLQVLVPGVLLGLLLGHLLGL-------ALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ  144 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence            99999999999999 6667666665543       478899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 047130          242 EMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISD  321 (815)
Q Consensus       242 D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e  321 (815)
                      |+++++++.+.......++.+.....+.+...+++.++.+++.++...|+.|+.++.+ .+|.+...++.+++++++++|
T Consensus       145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~la~  223 (273)
T TIGR00932       145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELR-PSELFTAGSLLLMFGSAYFAD  223 (273)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHH
Confidence            9999999988876654222222233344445555555667788899999999887654 357888899999999999999


Q ss_pred             HhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCC
Q 047130          322 LFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTN  373 (815)
Q Consensus       322 ~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~d  373 (815)
                      .+|.|+++|||++|+++++. +.++++.++++++. ++|+|+||+++|+++|
T Consensus       224 ~~g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~  273 (273)
T TIGR00932       224 LLGLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD  273 (273)
T ss_pred             HhCCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence            99999999999999999997 45788999999998 9999999999999987

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=100.00  E-value=3e-39  Score=362.44  Aligned_cols=374  Identities=22%  Similarity=0.383  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHH
Q 047130           80 VAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQ  159 (815)
Q Consensus        80 lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~  159 (815)
                      ++++++.+.+.++||+++|.+++|+++|+++||.+++..+.        + ....+.++++|+.+++|.+|+|+|.+.+|
T Consensus         3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~--------~-~~~~~~l~~i~l~~llF~~G~~~d~~~l~   73 (380)
T PF00999_consen    3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP--------D-NPSFELLAEIGLAFLLFEAGLELDIKELR   73 (380)
T ss_dssp             ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred             EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc--------h-hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            34455666677899999999999999999999998885431        1 36778999999999999999999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHH
Q 047130          160 KTGKKSLFTGLLTLLIPFLL-GAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCA  238 (815)
Q Consensus       160 ~~~k~~~~i~~~~~~ip~~~-~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a  238 (815)
                      |++|+++.+++.++.+|+++ ++.+++++.. .   +.++..++++|.++++||++++.++++|.+..+++.++++++++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~  149 (380)
T PF00999_consen   74 RNWRRALALGLVGFLLPFILVGFLLSFFLFI-L---GLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES  149 (380)
T ss_dssp             --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred             cccccccccccceeeehhhHHHHHHHHhhcc-c---hhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence            99999999999999999998 7666643210 0   12578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCchhHHHHHHHHHHHHH
Q 047130          239 LVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEG-KPVNSLHIHNIIMLALGAG  317 (815)
Q Consensus       239 ~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~-~~~~e~~~~~~l~~~l~~~  317 (815)
                      ++||+++++++.+.......+.   ....+.....++..+....+.+....|+.++..+. ++.++.+..+++++++.++
T Consensus       150 ~i~d~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  226 (380)
T PF00999_consen  150 VINDIIAIILLSILISLAQASG---QSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLY  226 (380)
T ss_dssp             TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred             hhhccchhhhhhhhhhhhcccc---cccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhc
Confidence            9999999998877766651111   11222222222222333333344444444443322 2456788899999999999


Q ss_pred             HHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhc-ccchhHHHHHHHHHHHHH
Q 047130          318 YISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIK-LLDDNLAKSTAVIVAVVV  396 (815)
Q Consensus       318 ~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~-~~~~~~~~~~~~i~~~~~  396 (815)
                      +++|.+|.|+++|+|++|+++++. +.++++.++++++.++++.|+||+++|+++|++.+. +...+.  ....+.+..+
T Consensus       227 ~~a~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~--~~~~~~~~~~  303 (380)
T PF00999_consen  227 GLAEILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVII--LVLLLLIAIL  303 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhh--hHHHHHHHHH
Confidence            999999999999999999999965 677789999999988999999999999999998884 121332  4555666666


Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047130          397 LAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYD  472 (815)
Q Consensus       397 ~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~  472 (815)
                      ++|++++++.+++.++++||+..+|+.|++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+.+
T Consensus       304 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~  379 (380)
T PF00999_consen  304 LGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLR  379 (380)
T ss_dssp             -------------------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------------
T ss_pred             HhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999988887653

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.2e-33  Score=281.84  Aligned_cols=376  Identities=15%  Similarity=0.225  Sum_probs=306.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHh
Q 047130           70 SLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLT  149 (815)
Q Consensus        70 ~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~  149 (815)
                      ..|+ +-.+..-+.++.+++.+..|+|+|+.+||+++|+++||.--|...          +......++++|++++||-+
T Consensus         4 ~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFgv   72 (408)
T COG4651           4 DTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFGV   72 (408)
T ss_pred             CchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHhc
Confidence            3444 445555667788999999999999999999999999997766542          34455699999999999999


Q ss_pred             hcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccCh
Q 047130          150 GVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSE  229 (815)
Q Consensus       150 Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~  229 (815)
                      |++++++.+...+.-+.--++.++.+...++...++.+++.       +...+.+|.++|..|+.|..|.|.|+++.+++
T Consensus        73 GLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws-------~~~glvfGlaLS~aSTVvllraLqEr~lidt~  145 (408)
T COG4651          73 GLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWS-------FGTGIVFGLALSVASTVVLLRALEERQLIDTQ  145 (408)
T ss_pred             chheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCC-------cccceeeeehhhhHHHHHHHHHHHHhcccccc
Confidence            99999999988877777677777777777788888777763       45678999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 047130          230 LGRLGLSCALVSEMIGLILTRSAIWIASIYH---APL----HSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVN  302 (815)
Q Consensus       230 ~g~lals~a~v~D~~~~~ll~v~~~~~~~~~---~~~----~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~  302 (815)
                      .||++++.-+++|+..+..+....++++.-+   ...    ....+++.+...|+.++.++.|++.+|+..+.... ..+
T Consensus       146 rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-Gsr  224 (408)
T COG4651         146 RGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSR  224 (408)
T ss_pred             CceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcH
Confidence            9999999999999999888877766653211   111    12234566888899999999999999999987543 257


Q ss_pred             hhHHHHHHHHHHHHHHH-HHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc
Q 047130          303 SLHIHNIIMLALGAGYI-SDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD  381 (815)
Q Consensus       303 e~~~~~~l~~~l~~~~i-~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~  381 (815)
                      |.+...++..+++.++- ++.+|.++.+|||++|+++.+. ...++..+..-++ .+.|.-+||+.+||..|+..+.+. 
T Consensus       225 Elf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~-  301 (408)
T COG4651         225 ELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQ-  301 (408)
T ss_pred             HHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcc-
Confidence            89999999999887755 5789999999999999999997 5667766665555 788999999999999999888766 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHH
Q 047130          382 DNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAI  461 (815)
Q Consensus       382 ~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~  461 (815)
                      ++   .+...+.+.+++|-+..+...+.++.|.|.++.++..+.+.|+++++++..+.+.+++++.--..++...++ ++
T Consensus       302 pl---~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sI  377 (408)
T COG4651         302 PL---AVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SI  377 (408)
T ss_pred             hH---HHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HH
Confidence            44   455666667789999999999999999999999999999999999999999999999986655555444444 55


Q ss_pred             HHHHHHHhhh
Q 047130          462 IIPILVKFLY  471 (815)
Q Consensus       462 i~~~lv~~ly  471 (815)
                      +..|+.....
T Consensus       378 l~nPllf~~~  387 (408)
T COG4651         378 LLNPLLFALL  387 (408)
T ss_pred             HHhHHHHHHH
Confidence            5555555444

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=99.96  E-value=5.4e-26  Score=263.22  Aligned_cols=356  Identities=10%  Similarity=-0.004  Sum_probs=254.9

Q ss_pred             HHHHHHHHHHHHHHHHHHh-hhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130           75 ELQIIVAFAVTHACHFVLK-RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM  153 (815)
Q Consensus        75 ll~i~lil~~~~~~~~llk-rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~  153 (815)
                      ++.++..+++..++..++| |+.+|..+.++++|+++||.++|.++... +  .......++ ++++++++.+|.+|+++
T Consensus        15 ~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~--g~~d~i~le-IteIvL~I~LFa~Gl~L   90 (810)
T TIGR00844        15 YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-W--GNTDSITLE-ISRILLCLQVFAVSVEL   90 (810)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-c--ccchHHHHH-HHHHHHHHHHHHHHHhC
Confidence            4444444444455566666 99999999999999999999888654210 0  001233444 99999999999999999


Q ss_pred             ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHH---HhhhccChh
Q 047130          154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVS---DLRIINSEL  230 (815)
Q Consensus       154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~---el~ll~s~~  230 (815)
                      +.+.+++.++..+.+.+.++.+++++++++++++...     .+|..++++|+++++|++.....+++   ..+ ++.++
T Consensus        91 ~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~G-----L~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rL  164 (810)
T TIGR00844        91 PRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPG-----LNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHL  164 (810)
T ss_pred             CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHH
Confidence            9999999999999999999999999888877766321     25899999999999999877777776   223 57888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CchhH
Q 047130          231 GRLGLSCALVSEMIGLILTRSAIWIASIY--HAPL--HSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKP-VNSLH  305 (815)
Q Consensus       231 g~lals~a~v~D~~~~~ll~v~~~~~~~~--~~~~--~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~-~~e~~  305 (815)
                      ..++.+++.+||.++++++.++..+....  +...  ...+..++..+++.++++++++.+..|+.++..+.+. ..+.+
T Consensus       165 R~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esf  244 (810)
T TIGR00844       165 RNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESF  244 (810)
T ss_pred             HhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            99999999999999998776554443211  1111  1112233333334444444444444454444321111 23456


Q ss_pred             HHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhH-HHHhhhhhHHHhhHHHHHHhhcccCChhhhccc----
Q 047130          306 IHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSA-LVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL----  380 (815)
Q Consensus       306 ~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~-l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~----  380 (815)
                      +.+.++++++++.+++.+|.++++++|++|+++.+...+.+. -...+......++..++|+++|+.+....+...    
T Consensus       245 la~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~  324 (810)
T TIGR00844       245 LAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGL  324 (810)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhH
Confidence            777888888899999999999999999999999986433322 233466667788899999999999988776431    


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCChHHHHHHHHHHhhhhhHHHHHHhhcccccc
Q 047130          381 DDNLAKSTAVIVAVVVLAKVATTMIPPLYC--KVPKRDAFALALIMSTKGIVEISTYNISRNIES  443 (815)
Q Consensus       381 ~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~  443 (815)
                      ..|.  .+++.+++.++.|..++++...+.  ..+++|++++|| .++||..++.++.++++.+.
T Consensus       325 ~~w~--~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~  386 (810)
T TIGR00844       325 DVWR--LIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE  386 (810)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence            1232  344455556677888888764433  478999999999 79999999999999987664

This model is specific for the fungal members of this family.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=99.95  E-value=1.3e-25  Score=259.74  Aligned_cols=369  Identities=14%  Similarity=0.063  Sum_probs=253.2

Q ss_pred             HHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHH
Q 047130           80 VAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQ  159 (815)
Q Consensus        80 lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~  159 (815)
                      .+++.+.....+++|+++|..++++++|+++||..++...       +. +.   +.+..+++..++|..|+++|++.+|
T Consensus         5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~-~~---~~~~~~~Lp~lLF~~g~~~~~~~l~   73 (525)
T TIGR00831         5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PL-DR---EIVLFLFLPPLLFEAAMNTDLRELR   73 (525)
T ss_pred             HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CC-CH---HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3444555667889999999999999999999986433210       01 11   2344589999999999999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHH
Q 047130          160 KTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCAL  239 (815)
Q Consensus       160 ~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~  239 (815)
                      |+++..+.+++.++++|++++..+.+++..      .++..++++|+++|+|+++++.+++++.+ .++++.+++.++++
T Consensus        74 ~~~~~i~~la~~~vlit~~~v~~~~~~~~~------l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESl  146 (525)
T TIGR00831        74 ENFRPIALIAFLLVVVTTVVVGFSLNWILG------IPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESL  146 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhh
Confidence            999999999999999999986665554432      26899999999999999999999999987 57889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHH
Q 047130          240 VSEMIGLILTRSAIWIASI-YHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGY  318 (815)
Q Consensus       240 v~D~~~~~ll~v~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~  318 (815)
                      +||..+++++.++.....+ +..+.......++..++..+++++++..+..|+.++..+.   +.....+++++.+++++
T Consensus       147 lND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~  223 (525)
T TIGR00831       147 LNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFL  223 (525)
T ss_pred             hcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHH
Confidence            9999999999877766542 2223333333333333344455555566666666553322   33567788889999999


Q ss_pred             HHHHhCchhhHHHHHHHhhcCCCCCc-h-----hHHHHhhhhhHHHhhHHHHHHhhcccCChhhh--cc-cc-hhHHHH-
Q 047130          319 ISDLFGQHVYFGPFVFGLAVPAGPPL-G-----SALVEKLDPMVSGLFIPLVVTSASMRTNLSDI--KL-LD-DNLAKS-  387 (815)
Q Consensus       319 i~e~~G~~~~lGafvaGl~~~~~~~~-~-----~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l--~~-~~-~~~~~~-  387 (815)
                      ++|.+|.|+++++|++|+++++..+. .     +.-.+.+......++.+++|+++|++++....  .. .. .+.... 
T Consensus       224 lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~  303 (525)
T TIGR00831       224 LAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVIL  303 (525)
T ss_pred             HHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence            99999999999999999999986433 1     12234566667789999999999999864211  11 00 000000 


Q ss_pred             -----HHHHHHHHHHHHHHHHHHhh-------hhcCCChHHHHHHHHHHhhhhhHHHHHHhhcc-c--cc--c-----cc
Q 047130          388 -----TAVIVAVVVLAKVATTMIPP-------LYCKVPKRDAFALALIMSTKGIVEISTYNISR-N--IE--S-----LT  445 (815)
Q Consensus       388 -----~~~i~~~~~~~K~i~~~l~~-------~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~-~--~~--~-----i~  445 (815)
                           .+++.......|++.++...       ...++++|+.+.++| .+.||.++++++...- .  .+  .     +-
T Consensus       304 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~  382 (525)
T TIGR00831       304 ALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELV  382 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHH
Confidence                 11111122344554433321       112578999999999 5999999999775321 1  11  1     11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130          446 DQMFSFLTVEILVTAIIIPILVKFL  470 (815)
Q Consensus       446 ~~~~~~lv~~~ll~t~i~~~lv~~l  470 (815)
                      .-++.++++++++.....||+++++
T Consensus       383 ~~~~~vVl~TllvqG~tlp~l~r~l  407 (525)
T TIGR00831       383 FLAAGVILFSLLVQGISLPIFVKRK  407 (525)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhc
Confidence            2233444455555555556666654

This model is specific for the bacterial members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=99.92  E-value=3.3e-22  Score=225.20  Aligned_cols=378  Identities=15%  Similarity=0.121  Sum_probs=283.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 047130           73 RLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK  152 (815)
Q Consensus        73 ~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle  152 (815)
                      ..++++.+++++......+.+|+..|.+..+++.|++.||.+++..+.        .....-+.+-.+++..++|..|++
T Consensus         6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~   77 (429)
T COG0025           6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE   77 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence            457788888889999999999999999999999999999988877542        112222334489999999999999


Q ss_pred             cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHH
Q 047130          153 MDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGR  232 (815)
Q Consensus       153 ~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~  232 (815)
                      +|.+.+||+++....+++.+++++.+....+.+++.+     ..++..++.+|+++|+|++.++.+++++.+ .+.++.+
T Consensus        78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~  151 (429)
T COG0025          78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT  151 (429)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence            9999999999999999999999998876666666532     236889999999999999999999999866 6889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHH
Q 047130          233 LGLSCALVSEMIGLILTRSAIWIASI-YHAPLHSAYRNLG----IMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIH  307 (815)
Q Consensus       233 lals~a~v~D~~~~~ll~v~~~~~~~-~~~~~~~~~~~~~----~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~  307 (815)
                      +..+++++||..+++++.+....... +..+.......++    ..++...+.+++.+++.+++.+|-  .. .......
T Consensus       152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~--~~-~~~~~~~  228 (429)
T COG0025         152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRG--WT-SPLLETL  228 (429)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc-chHHHHH
Confidence            99999999999999999877776542 2222233333333    333344444445455554444432  11 1346788


Q ss_pred             HHHHHHHHHHHHHHHhCchhhHHHHHHHhhcC---C--CCCch-hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc
Q 047130          308 NIIMLALGAGYISDLFGQHVYFGPFVFGLAVP---A--GPPLG-SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD  381 (815)
Q Consensus       308 ~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~---~--~~~~~-~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~  381 (815)
                      +.+...+..+.++|.+|.|++++.+++|++..   .  ..+.. +...+.+.+....++.-+.|+..|++++...+... 
T Consensus       229 i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-  307 (429)
T COG0025         229 LTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-  307 (429)
T ss_pred             HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-
Confidence            89999999999999999999999999998774   1  11222 34455577777888999999999999998877654 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CChHHHHHHHHHHhhhhhHHHHHHhhcccc-c-----ccchhHH
Q 047130          382 DNLAKSTAVIVAVVVLAKVATTMIPPLYCK------VPKRDAFALALIMSTKGIVEISTYNISRNI-E-----SLTDQMF  449 (815)
Q Consensus       382 ~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~------~~~~~~~~lgl~m~~kG~v~li~~~~~~~~-~-----~i~~~~~  449 (815)
                      .+.  .+++.++..+++|++++++..+..+      .+++|+++++| -++||.++++++...... .     .+-.-.+
T Consensus       308 ~~~--~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~  384 (429)
T COG0025         308 GLL--GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVF  384 (429)
T ss_pred             hHH--HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHH
Confidence            332  4667777778999999999998843      89999999999 599999999987765422 1     1222334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 047130          450 SFLTVEILVTAIIIPILVKFLY  471 (815)
Q Consensus       450 ~~lv~~~ll~t~i~~~lv~~ly  471 (815)
                      ..++.++++.+...||+.+++.
T Consensus       385 ~vIl~Sl~v~g~t~~~l~~~~~  406 (429)
T COG0025         385 LVILFSLLVQGLTLPPLAKKLE  406 (429)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhc
Confidence            4445555555555566666544

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.3e-23  Score=218.47  Aligned_cols=381  Identities=13%  Similarity=0.102  Sum_probs=308.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHh
Q 047130           70 SLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLT  149 (815)
Q Consensus        70 ~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~  149 (815)
                      ++..+++.-.++++++.+...+..|+|.|..+-.+..|++.|--++|.++.        ++.+....++++++++++|..
T Consensus         4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdg   75 (574)
T COG3263           4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDG   75 (574)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcC
Confidence            344555666678888889999999999999999999999999999998762        456778899999999999999


Q ss_pred             hcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccCh
Q 047130          150 GVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSE  229 (815)
Q Consensus       150 Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~  229 (815)
                      |+.++++.+|...++++.++..+++++-.+...+++++.+.      +|.+++++|++...|+.+.+..+|.+++ +|.+
T Consensus        76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~er  148 (574)
T COG3263          76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNER  148 (574)
T ss_pred             ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhh
Confidence            99999999999999999999999999998877777666552      6999999999999999999999998888 5889


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHH
Q 047130          230 LGRLGLSCALVSEMIGLILTRSAIWIASIYHAPL-HSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHN  308 (815)
Q Consensus       230 ~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~  308 (815)
                      ++.+..-++--||-+++++..-+..+...+..+. ...+..++..+++.++.++....+..|+++|+.-.   +..|..+
T Consensus       149 v~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil  225 (574)
T COG3263         149 VASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPIL  225 (574)
T ss_pred             hhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHH
Confidence            9999999999999999988754444433322211 12222355667788888899999999999998432   4578899


Q ss_pred             HHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCch-hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130          309 IIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLG-SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS  387 (815)
Q Consensus       309 ~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~-~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~  387 (815)
                      ++...+..+.+++.+|.|++++.+++|+.+.|.+-.. +.+.+-.+.+ .++.--+.|...|+.++++++... ...  .
T Consensus       226 ~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~i-avP--a  301 (574)
T COG3263         226 ALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPI-AIP--A  301 (574)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHh-hHH--H
Confidence            9999999999999999999999999999999985333 3455555555 678888889999999999887754 222  3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchh-HHHHHHHHHHHHHHHHHHH
Q 047130          388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ-MFSFLTVEILVTAIIIPIL  466 (815)
Q Consensus       388 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~-~~~~lv~~~ll~t~i~~~l  466 (815)
                      +++-+.+.+++|.+++|+...-++.++||.++++| -+-||.++++++.+..-.|.=+.+ .|++..+.++++..+.+..
T Consensus       302 ilL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~t  380 (574)
T COG3263         302 ILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGST  380 (574)
T ss_pred             HHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCc
Confidence            55566667899999999999999999999999999 599999999999998877765443 5677777777777776666


Q ss_pred             HHhhhcc
Q 047130          467 VKFLYDP  473 (815)
Q Consensus       467 v~~ly~p  473 (815)
                      +.+..|+
T Consensus       381 l~~~a~~  387 (574)
T COG3263         381 LPWAAKK  387 (574)
T ss_pred             chHHHHh
Confidence            6665543

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=99.89  E-value=1.3e-20  Score=217.90  Aligned_cols=372  Identities=11%  Similarity=0.058  Sum_probs=251.3

Q ss_pred             HHHHHHHHH-hhh-CCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhc
Q 047130           84 VTHACHFVL-KRF-GIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKT  161 (815)
Q Consensus        84 ~~~~~~~ll-krl-~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~  161 (815)
                      ++.+...+. |+. ++|..+..++.|+++|+...+... ....-+      .-+.+-.+.+..++|..|+++|.+.++++
T Consensus        20 ~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~-~~~~~l------~~~lf~~~~LPpIlFe~g~~l~~~~f~~n   92 (559)
T TIGR00840        20 LAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH-IDPPTL------DSSYFFLYLLPPIVLDAGYFMPQRNFFEN   92 (559)
T ss_pred             HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC-CccCCc------CHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            333444434 444 499999999999999985433211 000011      12455567888999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHH
Q 047130          162 GKKSLFTGLLTLLIPFLLGAAALEKMSRILG--IGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCAL  239 (815)
Q Consensus       162 ~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~--~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~  239 (815)
                      .+..+.+++.+++++.++.....+++....+  ....++..++.+|+++|+|++..+..++++.+ .+.++-.++.++++
T Consensus        93 ~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESl  171 (559)
T TIGR00840        93 LGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESL  171 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhh
Confidence            9999999999999998775555554332111  11236889999999999999999999999988 58899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc--CCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHH
Q 047130          240 VSEMIGLILTRSAIWIASIY--HAPLHS---AYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLAL  314 (815)
Q Consensus       240 v~D~~~~~ll~v~~~~~~~~--~~~~~~---~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l  314 (815)
                      +||..+++++.++..+...+  ..+...   ....++...+..+++++++..+..++.|+....+   .....+++++.+
T Consensus       172 lNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~---~~e~~l~l~~~y  248 (559)
T TIGR00840       172 LNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIR---QIEPLFVFLISY  248 (559)
T ss_pred             hhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHH
Confidence            99999999997777654321  111111   1111111111244555666666777777764432   355677888899


Q ss_pred             HHHHHHHHhCchhhHHHHHHHhhcCCC-----CCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHH
Q 047130          315 GAGYISDLFGQHVYFGPFVFGLAVPAG-----PPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTA  389 (815)
Q Consensus       315 ~~~~i~e~~G~~~~lGafvaGl~~~~~-----~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~  389 (815)
                      ++++++|.+|.|++++.+++|+++.+.     .+..+.-.+.+......++..+.|++.|+.+....  ..+.|.  .++
T Consensus       249 l~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~--~~~~~~--~i~  324 (559)
T TIGR00840       249 LSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN--HEWNWA--FVV  324 (559)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHH--HHH
Confidence            999999999999999999999999653     22222233455566677888999999999763221  111332  233


Q ss_pred             HHHHHHHHHHHHHHHHhhhh------cCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchh-HHHH----HHHHHHH
Q 047130          390 VIVAVVVLAKVATTMIPPLY------CKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ-MFSF----LTVEILV  458 (815)
Q Consensus       390 ~i~~~~~~~K~i~~~l~~~~------~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~-~~~~----lv~~~ll  458 (815)
                      +.+++.+++|++++++.++.      .+.+++|.+.++| .+.||.++++++....+.+.-..+ ..++    +++++++
T Consensus       325 ~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvlv  403 (559)
T TIGR00840       325 ATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIF  403 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHH
Confidence            44455568899888876543      3589999999999 589999999988755433322222 2222    2333333


Q ss_pred             HHHHHHHHHHhhh
Q 047130          459 TAIIIPILVKFLY  471 (815)
Q Consensus       459 ~t~i~~~lv~~ly  471 (815)
                      .....+|+++++.
T Consensus       404 qG~T~~pl~~~L~  416 (559)
T TIGR00840       404 QGGTIKPLVEVLK  416 (559)
T ss_pred             HHhhHHHHHHHhC
Confidence            3344567777654

This model is specific for the eukaryotic members members of this family.

>PRK11175 universal stress protein UspE; Provisional

Probab=99.81  E-value=5.1e-19  Score=192.56  Aligned_cols=274  Identities=10%  Similarity=0.069  Sum_probs=174.6

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc-C
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN-W  574 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~  574 (815)
                      |||+|+|+++++..+++.+..++  ++.+++++++|+++-+....+.........  .......++..+.++++.+.. .
T Consensus         5 ~ILv~~D~s~~~~~al~~a~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~   80 (305)
T PRK11175          5 NILVVIDPNQDDQPALRRAVYLA--QRNGGKITAFLPIYDFSYEMTTLLSPDERE--AMRQGVISQRTAWIREQAKPYLD   80 (305)
T ss_pred             eEEEEcCCCccccHHHHHHHHHH--HhcCCCEEEEEeccCchhhhhcccchhHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence            69999999999999999999998  557789999998863321111110000000  000001112222333333221 1


Q ss_pred             cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCccc
Q 047130          575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGR  654 (815)
Q Consensus       575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~  654 (815)
                      .+++++..+...  .+.+++|++.|+++++||||+|+|++.+..+.+.++      +.+++++++||||.++.++..   
T Consensus        81 ~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs------~~~~l~~~~~~pvlvv~~~~~---  149 (305)
T PRK11175         81 AGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTP------TDWHLLRKCPCPVLMVKDQDW---  149 (305)
T ss_pred             cCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccCh------hHHHHHhcCCCCEEEeccccc---
Confidence            456777765432  488999999999999999999999987766655444      445999999999999875421   


Q ss_pred             ccccccccCCcceEEEEecCCccH-------HHHHHHHHHHhhCC-CeEEEEEEeeecCccc--------cccchhhhhH
Q 047130          655 FISSELSLGSSFRVAMIFLGGSDD-------REALTLAKRMSQNT-SINLTVFRFIVKTDEM--------ISTNWEKVLD  718 (815)
Q Consensus       655 ~~~~~~~~~~~~~I~~~f~gg~Dd-------reAL~~a~rma~~~-~v~ltvl~~~~~~~~~--------~~~~~~~~~d  718 (815)
                              ...++|+++.+|+++.       ..|+.+|.++|+.. +++++++++..+....        ..++.++...
T Consensus       150 --------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~  221 (305)
T PRK11175        150 --------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIR  221 (305)
T ss_pred             --------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHH
Confidence                    1257999999998753       67999999999998 9999999987531100        0011111111


Q ss_pred             ---HHHHHHhcccCCCC-CCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhh
Q 047130          719 ---SEVLKEVKPENNFN-QRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCL  794 (815)
Q Consensus       719 ---~~~l~~~~~~~~~~-~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~l  794 (815)
                         ++.++++..+.... ......+-..  .+++.+++++.+.  ||++||++++      +|+.+|    =+|-..+-+
T Consensus       222 ~~~~~~l~~~~~~~~~~~~~~~v~~G~~--~~~I~~~a~~~~~--DLIVmG~~~~------~~~~~~----llGS~a~~v  287 (305)
T PRK11175        222 GQHLLAMKALRQKFGIDEEQTHVEEGLP--EEVIPDLAEHLDA--ELVILGTVGR------TGLSAA----FLGNTAEHV  287 (305)
T ss_pred             HHHHHHHHHHHHHhCCChhheeeccCCH--HHHHHHHHHHhCC--CEEEECCCcc------CCCcce----eecchHHHH
Confidence               12334443322111 1111111111  2336677777555  9999999988      677665    578888888


Q ss_pred             hcCCCCCcccEEEEe
Q 047130          795 VTEDLPGRYSVLVVQ  809 (815)
Q Consensus       795 as~d~~~~~SvLvvq  809 (815)
                      +..   .+.+||||.
T Consensus       288 ~~~---~~~pVLvv~  299 (305)
T PRK11175        288 IDH---LNCDLLAIK  299 (305)
T ss_pred             Hhc---CCCCEEEEc
Confidence            877   677999995

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.74  E-value=3.1e-15  Score=164.45  Aligned_cols=304  Identities=15%  Similarity=0.153  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChh-------HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVS-------MIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT  205 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~-------~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig  205 (815)
                      ..+.+.+.-+.+|.|.+|+|+.-+       ..||..-. ..-++.|+++|.++-.+    +..  +.    ....--+ 
T Consensus        62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~----~n~--~~----~~~~~GW-  129 (423)
T PRK14853         62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYVA----VNL--AG----GGALRGW-  129 (423)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHHH----HhC--Cc----hhhhhhh-
Confidence            345566666788999999999544       33333322 45678888888864332    221  10    0001111 


Q ss_pred             HHHhhccHHHHHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047130          206 VVHSLSRFPSIACLVSDLRI-INSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVV  284 (815)
Q Consensus       206 ~~ls~Ts~~vv~~iL~el~l-l~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~  284 (815)
                      .+-+.|+.+....+|+.+|- .++.++...++.|++||+.++++++++.    +++.+   ..+.......++  +    
T Consensus       130 ~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~---~~~L~~a~~~~~--~----  196 (423)
T PRK14853        130 AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELN---LEALLLALVPLA--L----  196 (423)
T ss_pred             hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCC---HHHHHHHHHHHH--H----
Confidence            23456888999999999875 4889999999999999999999888766    22222   122221111111  1    


Q ss_pred             HHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC-----------CchhHHHHhhh
Q 047130          285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP-----------PLGSALVEKLD  353 (815)
Q Consensus       285 r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~-----------~~~~~l~~kl~  353 (815)
                          .|+.+|.+    +++.+.++++.  +++.+..+..|+|+.+|+|++|+++|..+           +..++++++++
T Consensus       197 ----l~~l~~~~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~  266 (423)
T PRK14853        197 ----FWLLVQKR----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLR  266 (423)
T ss_pred             ----HHHHHHcC----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHH
Confidence                13333332    44455666553  36777899999999999999999999521           23578999999


Q ss_pred             hhHHHhhHHHH-HHhhcccCCh-hhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHH
Q 047130          354 PMVSGLFIPLV-VTSASMRTNL-SDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALA  421 (815)
Q Consensus       354 ~~~~~l~lPlF-F~~~G~~~dl-~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lg  421 (815)
                      +++..+++|+| |+..|.++|. ..+.+...-.  ....+++..+++|.+|.+..++..          +++|++-..+|
T Consensus       267 p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~p--v~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~  344 (423)
T PRK14853        267 PLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDP--IVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVA  344 (423)
T ss_pred             HHHHHHHHHHHHHHHhhheecCchhHHHHhhch--HHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHH
Confidence            99999999999 9999999986 4341111100  245667777899999988776643          47889998888


Q ss_pred             HHHhhhhhHHHHHHhhccc-ccccchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047130          422 LIMSTKGIVEISTYNISRN-IESLTDQMFSFLTVEILVTAIIIPILVKFLYDP  473 (815)
Q Consensus       422 l~m~~kG~v~li~~~~~~~-~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p  473 (815)
                      ++-+.-=++++-+.+.+++ .....++.=-.+.+.++++.+++-.+++...++
T Consensus       345 ~L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~~  397 (423)
T PRK14853        345 LLAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNRK  397 (423)
T ss_pred             HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8666666788888888884 222222332333444555555555555544433

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.1e-14  Score=150.01  Aligned_cols=350  Identities=9%  Similarity=0.031  Sum_probs=246.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccC
Q 047130           75 ELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMD  154 (815)
Q Consensus        75 ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d  154 (815)
                      +..-+.+.+++..--++-+++-+...+--.+.|+++||++++......    -.+.......++.+-+..-.|.++.|+.
T Consensus        16 ~~~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~----wgn~d~it~ei~RvvLcvqvfava~eLP   91 (467)
T KOG4505|consen   16 AASGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS----WGNKDYITYEISRVVLCVQVFAVAMELP   91 (467)
T ss_pred             HHHhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc----ccCcchhhhhhhhhhHhHHHHHHHHhcc
Confidence            333344445555555566677777778888999999999998754211    0122345667889999999999999999


Q ss_pred             hhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhh---ccChhH
Q 047130          155 VSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRI---INSELG  231 (815)
Q Consensus       155 ~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l---l~s~~g  231 (815)
                      -..+.++++..+.+-+.-+++-+...+.+.|.+....     ....++.++.++++|++.....+..+-+.   .+.++.
T Consensus        92 r~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~l-----nf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR  166 (467)
T KOG4505|consen   92 RAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNL-----NFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIR  166 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHH
Confidence            9999999998877765555555555555555554322     46789999999999996666666654433   456777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---Ch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchh
Q 047130          232 RLGLSCALVSEMIGLILTRSAIWIASIYHA---PL----HSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSL  304 (815)
Q Consensus       232 ~lals~a~v~D~~~~~ll~v~~~~~~~~~~---~~----~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~  304 (815)
                      .+..+++..||.++++++-+..-+...+..   .-    ...++.....+.+..+++++.|..++.-.++.--+   .|+
T Consensus       167 ~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eS  243 (467)
T KOG4505|consen  167 NLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RES  243 (467)
T ss_pred             HHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHH
Confidence            889999999999999988776655432211   00    12334444445566667777777776665554333   578


Q ss_pred             HHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHH-HHhhhhhHHHhhHHHHHHhhcccCChhhhcccc--
Q 047130          305 HIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSAL-VEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD--  381 (815)
Q Consensus       305 ~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l-~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~--  381 (815)
                      ++.+-+++++.|+.+.+.+|.+-.+-.|.||.+++...-+.++. ..++..+...++--.||++.|..++.+.++...  
T Consensus       244 fl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~g  323 (467)
T KOG4505|consen  244 FLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEG  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccC
Confidence            99999999999999999999999999999999999876555444 346777777778888999999999998876441  


Q ss_pred             --hhHHHHHHHHHHHHHHH-HHHHHHHhhhhcC--CChHHHHHHHHHHhhhhhHHHHHHhhccc
Q 047130          382 --DNLAKSTAVIVAVVVLA-KVATTMIPPLYCK--VPKRDAFALALIMSTKGIVEISTYNISRN  440 (815)
Q Consensus       382 --~~~~~~~~~i~~~~~~~-K~i~~~l~~~~~~--~~~~~~~~lgl~m~~kG~v~li~~~~~~~  440 (815)
                        .|   ..+++.++.++. |+-.+++.-.+..  .+|||+++.|. .+|.|.-++..+..+..
T Consensus       324 l~vw---rlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~  383 (467)
T KOG4505|consen  324 LPVW---RLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK  383 (467)
T ss_pred             chHH---HHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence              23   344444444444 4444443322221  57999999999 79999999888776643

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.59  E-value=8.2e-14  Score=155.52  Aligned_cols=382  Identities=12%  Similarity=0.056  Sum_probs=245.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhC---CChhHHHHHhhhhcccccccccccc-----cccccCCCchhHHHHHHHHHHHHHH
Q 047130           75 ELQIIVAFAVTHACHFVLKRFG---IPMIASQITGGLILGQAIPGLNRYY-----KHVLFSDTSLGTLDLVATFGYILFQ  146 (815)
Q Consensus        75 ll~i~lil~~~~~~~~llkrl~---~P~iv~~IlaGillGP~~lg~~~~~-----~~~lfp~~~~~~l~~la~lgli~~l  146 (815)
                      ++-.+.++.++.+..+++++-|   +|.-+.-++.|+++|-.........     ....|.+      +.+-.+-+--+.
T Consensus        37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpii  110 (575)
T KOG1965|consen   37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPII  110 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhh
Confidence            4445555666778999999988   9999999999999995432211111     1112221      122234455578


Q ss_pred             HHhhcccChhHHHhcchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhh
Q 047130          147 FLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLL-GAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRI  225 (815)
Q Consensus       147 F~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~-~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l  225 (815)
                      |..|.+++.+.++|+.......++.|..+...+ |.++.++... ......++..++++|+++|+|++..+..++.|++ 
T Consensus       111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~-~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-  188 (575)
T KOG1965|consen  111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFG-LLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-  188 (575)
T ss_pred             hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcc-cccccccHHHHHHHhhHhcccCchHHHHHHHHhC-
Confidence            999999999999999999999999988777554 5554444322 2223346899999999999999999999999998 


Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 047130          226 INSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLH--SAY----RNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGK  299 (815)
Q Consensus       226 l~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~--~~~----~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~  299 (815)
                      ....+-.++-+++++||..+++++............+..  ..+    ..+....+..+.++++.    ..+.|.+--++
T Consensus       189 vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~Glis----A~~lK~~~l~~  264 (575)
T KOG1965|consen  189 VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLIS----ALVLKFLYLRR  264 (575)
T ss_pred             CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcC
Confidence            466788899999999999999999777665432211111  111    22222222222222222    22333322221


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC-----CchhHHHHhhhhhHHHhhHHHHHHhhccc-CC
Q 047130          300 PVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP-----PLGSALVEKLDPMVSGLFIPLVVTSASMR-TN  373 (815)
Q Consensus       300 ~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~-----~~~~~l~~kl~~~~~~l~lPlFF~~~G~~-~d  373 (815)
                       .......+.+++....++++|.+|+++++..+..|+++++..     +..+.-.+.+-.+.+.+.--+-|+++|+. ++
T Consensus       265 -~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~  343 (575)
T KOG1965|consen  265 -TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFD  343 (575)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence             234567888999999999999999999999999999999752     22333344455555777788889999963 34


Q ss_pred             hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcC----------CChHHHHHHHHHHhhhhhHHHHHHhhcc-cc-
Q 047130          374 LSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCK----------VPKRDAFALALIMSTKGIVEISTYNISR-NI-  441 (815)
Q Consensus       374 l~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~----------~~~~~~~~lgl~m~~kG~v~li~~~~~~-~~-  441 (815)
                      .........+   .+....++.+++|..-.+..+.+.+          .|.++-..+.|.=.-||.++++++.--. +. 
T Consensus       344 ~~k~~~~~~~---fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~  420 (575)
T KOG1965|consen  344 FQKHVYKSLQ---FVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSP  420 (575)
T ss_pred             ccceeeechH---HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccc
Confidence            3333322111   2444555556778777776665554          3444455666644479999988775322 11 


Q ss_pred             ----cccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047130          442 ----ESLTDQMFSFLTVEILVTAIIIPILVKFLYD  472 (815)
Q Consensus       442 ----~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~  472 (815)
                          +.+-..+..++++.+++....+.|+++++-.
T Consensus       421 ~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~  455 (575)
T KOG1965|consen  421 HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMI  455 (575)
T ss_pred             cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence                2222333344444444445567899988663

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=99.50  E-value=1.7e-13  Score=129.40  Aligned_cols=131  Identities=16%  Similarity=0.266  Sum_probs=98.3

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG  575 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  575 (815)
                      |||+|+++++++..+++.+..+++  +.+.+++++|+++.+....+    +..    .......++..+.+.+..+.  .
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~--~~~~~v~ll~v~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~--~   68 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALAR--AQNGEIIPLNVIEVPNHSSP----SQL----EVNVQRARKLLRQAERIAAS--L   68 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhh--cCCCeEEEEEEEecCCCCCc----chh----HHHHHHHHHHHHHHHHHhhh--c
Confidence            699999999999999999999994  47889999999997654321    100    00112234445555554443  4


Q ss_pred             ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      ++.++..+..+  .++.++||+.|+++++|+||||+|++++..+.+      +|+++.+|++++||||+|+
T Consensus        69 g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~------lGs~~~~v~~~~~~pvlvv  131 (132)
T cd01988          69 GVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRL------FGGVIDQVLESAPCDVAVV  131 (132)
T ss_pred             CCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcccee------cCchHHHHHhcCCCCEEEe
Confidence            56777777665  479999999999999999999999998765444      5566679999999999986

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=99.40  E-value=5.3e-11  Score=128.79  Aligned_cols=270  Identities=14%  Similarity=0.128  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccC-cchHHHHHHHH
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVSMIQ---KTGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIG-MEDKMKLWVVT  205 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~-~~~~~~~l~ig  205 (815)
                      ..+.+.+.-+.+|.|.+|+|+.-+.+.   ++.||+   ..-++.|+++|.++-..    +... ++. ...|      |
T Consensus        52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~----~n~~-~~~~~~GW------~  120 (373)
T TIGR00773        52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLA----FNAN-DPITREGW------A  120 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhh----eecC-CCcccCcc------c
Confidence            445566666788999999999887764   233333   34567777888764222    2110 000 0112      1


Q ss_pred             HHH-hhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047130          206 VVH-SLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVV  284 (815)
Q Consensus       206 ~~l-s~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~  284 (815)
                      +-. +=++|++-.-.+-..+ .+..+....++-|++||+.+++++++...    ++-+   ..+......++.       
T Consensus       121 IP~ATDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~---~~~L~~a~~~~~-------  185 (373)
T TIGR00773       121 IPAATDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT----NDLS---MAALLVAAVAIA-------  185 (373)
T ss_pred             cccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCC---HHHHHHHHHHHH-------
Confidence            111 1123333332222222 56677889999999999999887776552    2222   222222222111       


Q ss_pred             HHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCch----hHHHHhhhhhHHHhh
Q 047130          285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLG----SALVEKLDPMVSGLF  360 (815)
Q Consensus       285 r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~----~~l~~kl~~~~~~l~  360 (815)
                         ..++.+|..    +++...+..+.. +..+++ ...|+|+.+|+|++|+++|..++..    +++++.+++.+..++
T Consensus       186 ---~l~~~~~~~----v~~~~~y~~lgv-llW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~li  256 (373)
T TIGR00773       186 ---VLAVLNRCG----VRRLGPYMLVGV-ILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLI  256 (373)
T ss_pred             ---HHHHHHHcC----CchhhHHHHHHH-HHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHH
Confidence               113334432    333444444333 333333 7999999999999999999864443    455666666688999


Q ss_pred             HHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhhh
Q 047130          361 IPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKGI  429 (815)
Q Consensus       361 lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~  429 (815)
                      +|+| |+..|.++|...+.....+   ....+++..+++|.+|++..++..          +++|++-..+|++-+.-=+
T Consensus       257 lPlFAFanAGv~l~~~~~~~~~~~---v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFT  333 (373)
T TIGR00773       257 LPLFAFANAGVSLQGVSLNGLTSM---LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFT  333 (373)
T ss_pred             HHHHHHHhcCeeeecCcchhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999 9999999986554332123   456777778899999999887644          4788998888886555567


Q ss_pred             HHHHHHhhccc
Q 047130          430 VEISTYNISRN  440 (815)
Q Consensus       430 v~li~~~~~~~  440 (815)
                      +++-+.+.+++
T Consensus       334 mSlfI~~LAf~  344 (373)
T TIGR00773       334 MSIFIASLAFG  344 (373)
T ss_pred             HHHHHHHHhcC
Confidence            78888888884

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>PRK15456 universal stress protein UspG; Provisional

Probab=99.36  E-value=4.4e-12  Score=121.86  Aligned_cols=136  Identities=10%  Similarity=0.050  Sum_probs=93.1

Q ss_pred             ceeEEeeecCC--ChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHh
Q 047130          495 LRILACIYRPD--NIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK  572 (815)
Q Consensus       495 lrILv~i~~~~--~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~  572 (815)
                      -|||+|+|+++  ++..+++.+..++.  .. .+++++|+++-....  .. ...............+...+.++++.+.
T Consensus         3 ~~ILv~vD~S~~~~s~~al~~A~~la~--~~-~~l~llhv~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (142)
T PRK15456          3 KTIIMPVDVFEMELSDKAVRHAEFLAQ--DD-GVIHLLHVLPGSASL--SL-HRFAADVRRFEEHLQHEAEERLQTMVSH   76 (142)
T ss_pred             ccEEEeccCCchhHHHHHHHHHHHHHh--cC-CeEEEEEEecCcccc--cc-cccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            37999999984  89999999999984  33 489999998754211  00 0000000000011123344455555543


Q ss_pred             cC-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          573 NW-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       573 ~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      .. .++++++.+..+   +..++|++.|+++++||||||.||+. ..+.+.||.++      +|++++||||.|+
T Consensus        77 ~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~------~v~~~a~~pVLvV  141 (142)
T PRK15456         77 FTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNAS------SVIRHANLPVLVV  141 (142)
T ss_pred             hCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHH------HHHHcCCCCEEEe
Confidence            22 456778777666   89999999999999999999999974 55556555555      9999999999986

>PRK15005 universal stress protein F; Provisional

Probab=99.35  E-value=7.1e-12  Score=120.50  Aligned_cols=137  Identities=18%  Similarity=0.121  Sum_probs=92.6

Q ss_pred             eeEEeeecCCC--hHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc
Q 047130          496 RILACIYRPDN--IPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN  573 (815)
Q Consensus       496 rILv~i~~~~~--~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~  573 (815)
                      |||+|+|++++  +..+++.+..++  +..+.+++++|+++.............  ..........++..+.++++.+..
T Consensus         4 ~ILv~~D~s~~~~~~~a~~~a~~la--~~~~~~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~   79 (144)
T PRK15005          4 TILVPIDISDSELTQRVISHVEAEA--KIDDAEVHFLTVIPSLPYYASLGLAYS--AELPAMDDLKAEAKSQLEEIIKKF   79 (144)
T ss_pred             cEEEecCCCchhHHHHHHHHHHHHH--hccCCeEEEEEEEccCccccccccccc--ccchHHHHHHHHHHHHHHHHHHHh
Confidence            69999999998  578999998888  456789999999985322111000000  000000112233444555555443


Q ss_pred             C-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          574 W-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       574 ~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      . .+++++..+..+   +..+.|++.|+++++||||||.|+ .++.+.+.||.++      +|++++||||.++
T Consensus        80 ~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS~a~------~vl~~a~cpVlvV  143 (144)
T PRK15005         80 KLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITTYLLGSNAA------AVVRHAECSVLVV  143 (144)
T ss_pred             CCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecchHH------HHHHhCCCCEEEe
Confidence            2 445677776555   889999999999999999999995 4566656555554      9999999999886

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=99.26  E-value=4.8e-11  Score=115.05  Aligned_cols=142  Identities=10%  Similarity=0.072  Sum_probs=94.1

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc-C
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN-W  574 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~  574 (815)
                      +||+|+|.++++..+++.+..++.  ..+.+++++|+++.+... +.... .............++..+.++++.+.. .
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~--~~~~~l~ll~v~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   76 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLA--TKGQTIVLVHVHPPITSI-PSSSG-KLEVASAYKQEEDKEAKELLLPYRCFCSR   76 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhcc--CCCCcEEEEEeccCcccC-CCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999984  467899999998754321 10000 000000000011122333344433221 1


Q ss_pred             cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCC--CceEEEec
Q 047130          575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAP--CSVGILID  648 (815)
Q Consensus       575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~Ap--CsVgIlvd  648 (815)
                      .++.++..+..+  .+..+.|++.|++.++|+||||.|++.++.+.+-++     ++.++|+++||  |||.++.|
T Consensus        77 ~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gs-----sva~~Vi~~a~~~c~Vlvv~~  145 (146)
T cd01989          77 KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKS-----DVASSVLKEAPDFCTVYVVSK  145 (146)
T ss_pred             cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCC-----chhHHHHhcCCCCceEEEEeC
Confidence            456676666543  378999999999999999999999998876554321     35569999999  99998753

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PRK09982 universal stress protein UspD; Provisional

Probab=99.25  E-value=1.6e-11  Score=118.02  Aligned_cols=134  Identities=10%  Similarity=-0.005  Sum_probs=90.3

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG  575 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  575 (815)
                      |||+|+|+++++..+++.+..++  ++.+.+++++|+++......+.......  . .......+...+.++++.+.. +
T Consensus         5 ~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~-~   78 (142)
T PRK09982          5 HIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGIYFPAT--E-DILQLLKNKSDNKLYKLTKNI-Q   78 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhhhccch--H-HHHHHHHHHHHHHHHHHHHhc-C
Confidence            79999999999999999999999  5578999999998743211000000000  0 000111222333455544432 2


Q ss_pred             ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130          576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI  647 (815)
Q Consensus       576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv  647 (815)
                      ...++..+..+   +..+.|++.|+++++||||||.| +.+..+.       + ++.++|+++|+|||.|+.
T Consensus        79 ~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~-------~-~va~~V~~~s~~pVLvv~  138 (142)
T PRK09982         79 WPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFINRL-------M-PAYRGMINKMSADLLIVP  138 (142)
T ss_pred             CCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHHHH-------H-HHHHHHHhcCCCCEEEec
Confidence            23466666666   89999999999999999999977 5554433       2 266799999999999973

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=99.18  E-value=1.2e-10  Score=112.15  Aligned_cols=133  Identities=10%  Similarity=0.028  Sum_probs=87.1

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG  575 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  575 (815)
                      |||+|+|++++...+++.+..++  +..+..++++|+.+-.....+...  ... .........++..+.++++.+.  .
T Consensus         5 ~ILvavD~S~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~--~   77 (144)
T PRK15118          5 HILIAVDLSPESKVLVEKAVSMA--RPYNAKVSLIHVDVNYSDLYTGLI--DVN-LGDMQKRISEETHHALTELSTN--A   77 (144)
T ss_pred             EEEEEccCChhHHHHHHHHHHHH--HhhCCEEEEEEEccChhhhhhhhh--hcc-hHHHHHHHHHHHHHHHHHHHHh--C
Confidence            79999999999999999999998  446789999998431111000000  000 0000111123333455555543  2


Q ss_pred             ceEEE-EEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130          576 TACVY-PFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI  647 (815)
Q Consensus       576 ~v~v~-~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv  647 (815)
                      ++.+. ..+..+   +.++.|++.|+++++||||||.|++ ...        .++++..+|+++|||||.|+.
T Consensus        78 ~~~~~~~~~~~G---~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~--------~lgSva~~v~~~a~~pVLvv~  138 (144)
T PRK15118         78 GYPITETLSGSG---DLGQVLVDAIKKYDMDLVVCGHHQD-FWS--------KLMSSARQLINTVHVDMLIVP  138 (144)
T ss_pred             CCCceEEEEEec---CHHHHHHHHHHHhCCCEEEEeCccc-HHH--------HHHHHHHHHHhhCCCCEEEec
Confidence            34432 333344   8899999999999999999999963 211        156778899999999999985

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=99.11  E-value=2.1e-10  Score=108.09  Aligned_cols=134  Identities=15%  Similarity=0.130  Sum_probs=90.7

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHH---HHHH
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFK---LFEE  571 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~~  571 (815)
                      -|||+|+|++++...+++.+..++  +.++..++++|+++..............    .  ....+.......   ....
T Consensus         3 ~~Ilv~~d~~~~~~~al~~a~~la--~~~~~~i~~l~v~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~   74 (140)
T PF00582_consen    3 KRILVAIDGSEESRRALRFALELA--KRSGAEITLLHVIPPPPQYSFSAAEDEE----S--EEEAEEEEQARQAEAEEAE   74 (140)
T ss_dssp             SEEEEEESSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEESCHCHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHH--HhhCCeEEEEEeeccccccccccccccc----c--ccccchhhhhhhHHHHHHh
Confidence            389999999999999999999998  4478999999999965432111100000    0  000000000000   1111


Q ss_pred             hcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      . .........+..+   +..++|++.++++++|+||||.|++.+..+.+      ++++.+++++++||||.|+
T Consensus        75 ~-~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv  139 (140)
T PF00582_consen   75 A-EGGIVIEVVIESG---DVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV  139 (140)
T ss_dssp             H-HTTSEEEEEEEES---SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred             h-hccceeEEEEEee---ccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence            1 1234444444444   89999999999999999999999977666554      6777789999999999987

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=99.08  E-value=6.2e-10  Score=104.10  Aligned_cols=122  Identities=19%  Similarity=0.111  Sum_probs=88.4

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG  575 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  575 (815)
                      |||+|+++++....+++.+..++  ++.+..++++|+++-...  +    .         ....++.++.+.+..++  .
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la--~~~~~~l~ll~v~~~~~~--~----~---------~~~~~~~l~~~~~~~~~--~   61 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLA--DRLKAPWYVVYVETPRLN--R----L---------SEAERRRLAEALRLAEE--L   61 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHH--HHhCCCEEEEEEecCccc--c----C---------CHHHHHHHHHHHHHHHH--c
Confidence            69999999999999999999999  447889999999863211  0    0         01123334444444333  2


Q ss_pred             ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcC-CCceEEE
Q 047130          576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERA-PCSVGIL  646 (815)
Q Consensus       576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~A-pCsVgIl  646 (815)
                      ++.  ..+..+  .+..+.|++.|+++++|+||||+|+++.+...+      ++++.++|+++| ||||.|.
T Consensus        62 ~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~------~Gs~~~~v~~~a~~~~v~v~  123 (124)
T cd01987          62 GAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELF------RGSLVDRLLRRAGNIDVHIV  123 (124)
T ss_pred             CCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHh------cccHHHHHHHhCCCCeEEEe
Confidence            233  233333  478999999999999999999999997776555      555566999999 9999885

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.07  E-value=1.9e-08  Score=110.80  Aligned_cols=298  Identities=13%  Similarity=0.114  Sum_probs=176.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH
Q 047130          132 GTLDLVATFGYILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT  205 (815)
Q Consensus       132 ~~l~~la~lgli~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig  205 (815)
                      ...+.+.+.-+.+|.|.+|+|+.-+.+..   +.||+   ..-++.|+++|.++-.    .+..  +.+.     .--+|
T Consensus        67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~----~~n~--~~~~-----~~GWg  135 (438)
T PRK14856         67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYF----FLNA--DTPS-----QHGFG  135 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHh----heec--CCCc-----cCccc
Confidence            34455667777889999999998777642   23333   3456777788876422    2211  1000     11122


Q ss_pred             HHHhhccHHHHHHHHHHhh-hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047130          206 VVHSLSRFPSIACLVSDLR-IINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVV  284 (815)
Q Consensus       206 ~~ls~Ts~~vv~~iL~el~-ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~  284 (815)
                      +- ..|+.+-..-++.=+| ..++.+....++-|++||+.++++++++..    ++.   ...+..+...++.+      
T Consensus       136 IP-mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i---~~~~L~~a~~~~~~------  201 (438)
T PRK14856        136 IP-MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TNL---KFAWLLGALGVVLV------  201 (438)
T ss_pred             cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCC---cHHHHHHHHHHHHH------
Confidence            21 1233333333332222 246677788999999999999988776552    222   12333333222221      


Q ss_pred             HHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc--------------------
Q 047130          285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL--------------------  344 (815)
Q Consensus       285 r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~--------------------  344 (815)
                          .++.+|..    ++....++++..  +.-+....-|+|+.++..++|+++|..++.                    
T Consensus       202 ----l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~  271 (438)
T PRK14856        202 ----LAVLNRLN----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG  271 (438)
T ss_pred             ----HHHHHHcC----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence                12334432    223334444332  334445578999999999999999975322                    


Q ss_pred             ------------------------hhHHHHhhhhhHHHhhHHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHH
Q 047130          345 ------------------------GSALVEKLDPMVSGLFIPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAK  399 (815)
Q Consensus       345 ------------------------~~~l~~kl~~~~~~l~lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K  399 (815)
                                              -+++++.+++.+..+.+|+| |+..|..++........+    ....+++..++||
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~p----v~lGI~~GLvvGK  347 (438)
T PRK14856        272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDK----VLLGVILGLCLGK  347 (438)
T ss_pred             cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCc----HHHHHHHHHHhcc
Confidence                                    13466677788888999999 889999987543221112    3455666667889


Q ss_pred             HHHHHHhhhhc----------CCChHHHHHHHHHHhhhhhHHHHHHhhcccc--cccchhHHHHHHHHHHHHHHHHHHHH
Q 047130          400 VATTMIPPLYC----------KVPKRDAFALALIMSTKGIVEISTYNISRNI--ESLTDQMFSFLTVEILVTAIIIPILV  467 (815)
Q Consensus       400 ~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~--~~i~~~~~~~lv~~~ll~t~i~~~lv  467 (815)
                      .+|.+..++..          +++|++-...|++-+.-=++++-+.+.+++.  ....++.=..+.+.++++.+++..++
T Consensus       348 ~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L  427 (438)
T PRK14856        348 PLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYL  427 (438)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888777643          4788998888886555567888888888843  22223333333344445455555444


Q ss_pred             H
Q 047130          468 K  468 (815)
Q Consensus       468 ~  468 (815)
                      +
T Consensus       428 ~  428 (438)
T PRK14856        428 F  428 (438)
T ss_pred             H
Confidence            4

>PRK10116 universal stress protein UspC; Provisional

Probab=99.05  E-value=9.9e-10  Score=105.33  Aligned_cols=136  Identities=10%  Similarity=0.032  Sum_probs=90.9

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW  574 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  574 (815)
                      -|||+++|++++...+++.+..++  ++.+..++++|+++.+.... .+ ....  .........++..+.++++.+.  
T Consensus         4 ~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~--   75 (142)
T PRK10116          4 SNILVAVAVTPESQQLLAKAVSIA--RPVNGKISLITLASDPEMYN-QF-AAPM--LEDLRSVMQEETQSFLDKLIQD--   75 (142)
T ss_pred             ceEEEEccCCcchHHHHHHHHHHH--HHhCCEEEEEEEccCcccch-hh-hHHH--HHHHHHHHHHHHHHHHHHHHHh--
Confidence            479999999999999999999998  44678999999987532110 01 0000  0000011122333445555443  


Q ss_pred             cceEEE-EEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130          575 GTACVY-PFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR  649 (815)
Q Consensus       575 ~~v~v~-~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr  649 (815)
                      .+++.. ..+   ...+..+.|++.|+++++||||||.|++.+.+..        .++..+|++++||||.|+...
T Consensus        76 ~~~~~~~~~~---~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~--------~s~a~~v~~~~~~pVLvv~~~  140 (142)
T PRK10116         76 ADYPIEKTFI---AYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA--------SCSAKRVIASSEVDVLLVPLT  140 (142)
T ss_pred             cCCCeEEEEE---ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH--------HHHHHHHHhcCCCCEEEEeCC
Confidence            233332 333   3458899999999999999999999998665442        245569999999999998543

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.01  E-value=8.3e-08  Score=104.30  Aligned_cols=271  Identities=12%  Similarity=0.095  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV  206 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~  206 (815)
                      ..+.+.+.=+.+|.|.+|+|+.-+.+..   +.||+   ..-++.|+++|.++-..    +..  +.+.    ..--+|+
T Consensus        59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~----~n~--g~~~----~~~GWgI  128 (389)
T PRK09560         59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAA----FNY--NNPE----TLRGWAI  128 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhe----eec--CCCc----ccCcccc
Confidence            3455566667889999999998777642   23333   45567778888764222    211  1000    0011111


Q ss_pred             HHhhccHHHHHHHHHHh-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130          207 VHSLSRFPSIACLVSDL-RIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR  285 (815)
Q Consensus       207 ~ls~Ts~~vv~~iL~el-~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r  285 (815)
                      - ..|+.+-..-+++=+ +..+..+....++-|++||+.+++++++...    ++-+   ..+......++.+       
T Consensus       129 P-mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~---~~~L~~a~~~~~~-------  193 (389)
T PRK09560        129 P-AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLS---LPALALAAIAIAV-------  193 (389)
T ss_pred             c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCC---HHHHHHHHHHHHH-------
Confidence            1 123333333333222 2256677889999999999999887776552    2222   2233322222211       


Q ss_pred             HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc------hhHHHHhhhhhHHHh
Q 047130          286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL------GSALVEKLDPMVSGL  359 (815)
Q Consensus       286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~------~~~l~~kl~~~~~~l  359 (815)
                         .++.+|..    ++....+..+..  +.-+....-|+|+.++..++|+++|..++.      -+++++++++.+..+
T Consensus       194 ---l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~  264 (389)
T PRK09560        194 ---LFLLNRLG----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFA  264 (389)
T ss_pred             ---HHHHHHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhh
Confidence               12334432    233344444443  334444578999999999999999975322      256889999999888


Q ss_pred             hHHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhh
Q 047130          360 FIPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKG  428 (815)
Q Consensus       360 ~lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG  428 (815)
                      .+|+| |+..|..++-..+.....-   ....+++..++||.+|.+..++..          +++|++-..+|++-+.-=
T Consensus       265 IlPlFAlaNAGV~l~~~~~~~~~~p---v~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGF  341 (389)
T PRK09560        265 ILPLFAFANAGVSLAGISLSSLTSP---VPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGF  341 (389)
T ss_pred             hHHHHHhhcCCeeecCCcHHhccCc---HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999 8888988843223221111   245566666788998888776643          478899888888655566


Q ss_pred             hHHHHHHhhccc
Q 047130          429 IVEISTYNISRN  440 (815)
Q Consensus       429 ~v~li~~~~~~~  440 (815)
                      ++++-+.+.++.
T Consensus       342 TmSLFIa~LAF~  353 (389)
T PRK09560        342 TMSLFIGSLAFG  353 (389)
T ss_pred             HHHHHHHHhhcC
Confidence            778888888883

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=98.95  E-value=1.3e-07  Score=103.94  Aligned_cols=267  Identities=13%  Similarity=0.067  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV  206 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~  206 (815)
                      ..+.+.+--+.+|.|.+|+|+.-+.+..   +.|++   ..-++.|+++|.++-.    .+..  +.+     ..--+|+
T Consensus        63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~----~~n~--~~~-----~~~GWgI  131 (423)
T PRK14855         63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYT----ALNA--GGP-----GASGWGV  131 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHh----eeec--CCC-----ccCcccc
Confidence            3445556667889999999998877642   33333   3456777778776422    2211  100     0111222


Q ss_pred             HHhhccHHHHHHHHHHhh-hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130          207 VHSLSRFPSIACLVSDLR-IINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR  285 (815)
Q Consensus       207 ~ls~Ts~~vv~~iL~el~-ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r  285 (815)
                      - ..|+.+-..-+|+=+| ..+..+....++-|++||+.++++++++..    ++.+   ..+..+...++.        
T Consensus       132 P-mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~---~~~L~~a~~~~~--------  195 (423)
T PRK14855        132 P-MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----SGLN---LLALLLAALTWA--------  195 (423)
T ss_pred             c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----CCCC---HHHHHHHHHHHH--------
Confidence            1 2233333333333222 245667788999999999999887776552    2222   223222222111        


Q ss_pred             HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC-Cc--------------------
Q 047130          286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP-PL--------------------  344 (815)
Q Consensus       286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~-~~--------------------  344 (815)
                        ..++.+|..    ++....++.+..  +.-+....-|+|+.++..++|+++|..+ +.                    
T Consensus       196 --~l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (423)
T PRK14855        196 --LALLAGRLG----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVG  267 (423)
T ss_pred             --HHHHHHHcC----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhh
Confidence              112334432    233344444333  3344455789999999999999999751 11                    


Q ss_pred             ----------------hhHHHHhhhhhHHHhhHHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 047130          345 ----------------GSALVEKLDPMVSGLFIPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPP  407 (815)
Q Consensus       345 ----------------~~~l~~kl~~~~~~l~lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~  407 (815)
                                      .+++++++++.+..+.+|+| |+..|..++-.. ...      ....+++..++||.+|.+..+
T Consensus       268 ~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p------v~lGI~~GLvvGK~lGI~~~s  340 (423)
T PRK14855        268 ARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT------VSLGVFLGLLLGKPLGVVGGA  340 (423)
T ss_pred             HHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc------HHHHHHHHHHhcchHHHHHHH
Confidence                            24577788888888999999 888898885322 222      244556666788998888777


Q ss_pred             hhc----------CCChHHHHHHHHHHhhhhhHHHHHHhhcccc
Q 047130          408 LYC----------KVPKRDAFALALIMSTKGIVEISTYNISRNI  441 (815)
Q Consensus       408 ~~~----------~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~  441 (815)
                      +..          +++|++-...|++-+.-=++++-+++.+++.
T Consensus       341 ~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~  384 (423)
T PRK14855        341 WLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD  384 (423)
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            643          4788998888886556667888888888853

>PRK11175 universal stress protein UspE; Provisional

Probab=98.92  E-value=4.2e-09  Score=114.62  Aligned_cols=142  Identities=13%  Similarity=0.070  Sum_probs=92.4

Q ss_pred             ceeEEeeecCCCh-------HHHHHHHHHhCCCCCC-CceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHH
Q 047130          495 LRILACIYRPDNI-------PAIIKFLQASCPKRGS-LVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSF  566 (815)
Q Consensus       495 lrILv~i~~~~~~-------~~~i~la~~~~~~~~~-~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af  566 (815)
                      -|||+|+|+++..       ..+++.+..++  +.. ...++++|+.+.............  ..........++..+.+
T Consensus       153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la--~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l  228 (305)
T PRK11175        153 GKILVAVNVASEEPYHDALNEKLVEEAIDLA--EQLNHAEVHLVNAYPVTPINIAIELPEF--DPSVYNDAIRGQHLLAM  228 (305)
T ss_pred             CeEEEEeCCCCCccchhHHHHHHHHHHHHHH--hhCcCCceEEEEEecCcchhcccccccc--chhhHHHHHHHHHHHHH
Confidence            4899999998764       46888888887  335 678999999875432100000000  00000011112333455


Q ss_pred             HHHHHhcCcceEE-EEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEE
Q 047130          567 KLFEEKNWGTACV-YPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGI  645 (815)
Q Consensus       567 ~~~~~~~~~~v~v-~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgI  645 (815)
                      +++.+..  ++.. +..+..   .+..+.|++.|+++++||||||.|++.++.+.+.|+.+      ++|++++||||.+
T Consensus       229 ~~~~~~~--~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a------~~v~~~~~~pVLv  297 (305)
T PRK11175        229 KALRQKF--GIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTA------EHVIDHLNCDLLA  297 (305)
T ss_pred             HHHHHHh--CCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchH------HHHHhcCCCCEEE
Confidence            5555442  2322 233333   37889999999999999999999999888877755554      5999999999999


Q ss_pred             EeccCC
Q 047130          646 LIDRGR  651 (815)
Q Consensus       646 lvdrg~  651 (815)
                      ++.++.
T Consensus       298 v~~~~~  303 (305)
T PRK11175        298 IKPDGY  303 (305)
T ss_pred             EcCCCC
Confidence            976654

>cd00293 USP_Like Usp: Universal stress protein family

Probab=98.90  E-value=1.1e-08  Score=95.28  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=90.6

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc-C
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN-W  574 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~  574 (815)
                      |||+|++++++...+++.+..++  +..+..++++|+.+-.+....   ...        ....++..+.++++.... .
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a--~~~~~~i~~l~v~~~~~~~~~---~~~--------~~~~~~~~~~l~~~~~~~~~   67 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLA--RRLGAELVLLHVVDPPPSSAA---ELA--------ELLEEEARALLEALREALAE   67 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCCCCcch---hHH--------HHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999  446899999999875433211   000        001122233444444321 1


Q ss_pred             cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      .+++++.....+   +..++|++.+++.++|++|+|.+++....+.+.++.      .+++++++||||.++
T Consensus        68 ~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~------~~~ll~~~~~pvliv  130 (130)
T cd00293          68 AGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSV------AERVLRHAPCPVLVV  130 (130)
T ss_pred             CCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccH------HHHHHhCCCCCEEeC
Confidence            456776666555   448999999999999999999998866544454444      459999999999763

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=98.89  E-value=4.5e-07  Score=98.14  Aligned_cols=272  Identities=10%  Similarity=0.072  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVSMIQ---KTGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV  206 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~  206 (815)
                      ..+.+.+.=+.+|.|.+|+|+.-+.+.   ++.||+   ..-++.|+++|.++-..+.    .. +.....|      |+
T Consensus        56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n----~~-~~~~~GW------~I  124 (383)
T PRK14854         56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSIN----HD-IKVINGW------AI  124 (383)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhc----cC-CcccCcc------cc
Confidence            344555666788999999999877654   233333   4556777888876433221    11 1000112      11


Q ss_pred             HHh-hccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130          207 VHS-LSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR  285 (815)
Q Consensus       207 ~ls-~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r  285 (815)
                      -.+ -++|++-.-.+-..+ .+..+.-..++-|++||+.++++++++..    ++-+   ..+.......+.  +.    
T Consensus       125 P~ATDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~i~---~~~L~~A~~~~~--~l----  190 (383)
T PRK14854        125 PSATDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT----KSLS---LLSLSLGTLFIL--AM----  190 (383)
T ss_pred             ccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC----CCcc---HHHHHHHHHHHH--HH----
Confidence            111 122333322222222 56677778888999999999887776552    2221   122222111111  11    


Q ss_pred             HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc----hhHHHHhhhhhHHHhhH
Q 047130          286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL----GSALVEKLDPMVSGLFI  361 (815)
Q Consensus       286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~----~~~l~~kl~~~~~~l~l  361 (815)
                          ++.+|...   ++....++++.  ++.-+....-|+|+.++..+.|+++|...+.    -+++++++++.+..+.+
T Consensus       191 ----~~~nr~~~---v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~Il  261 (383)
T PRK14854        191 ----IICNRIFK---INRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFIL  261 (383)
T ss_pred             ----HHHHHhcC---CceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhH
Confidence                11222111   22333444433  2334445578999999999999999974221    25788889999999999


Q ss_pred             HHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhhhH
Q 047130          362 PLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKGIV  430 (815)
Q Consensus       362 PlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v  430 (815)
                      |+| |+..|..++-..+.....-   ....+++..++||.+|.+..++..          +++|++-..+|++-+.-=++
T Consensus       262 PlFA~aNAGV~l~~~~~~~~~~p---v~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTm  338 (383)
T PRK14854        262 PVFAFANAGISFSGISFSILFEP---ITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTM  338 (383)
T ss_pred             HHHHhhcCCeeeccCcHHhhcCc---HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999 8888988842222211111   244566666788998888776643          47789988888865566678


Q ss_pred             HHHHHhhcccc
Q 047130          431 EISTYNISRNI  441 (815)
Q Consensus       431 ~li~~~~~~~~  441 (815)
                      ++-+++.+++.
T Consensus       339 SLFIa~LAF~~  349 (383)
T PRK14854        339 SLFIGVLAFND  349 (383)
T ss_pred             HHHHHHhhCCC
Confidence            88888888853

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=98.88  E-value=5.1e-07  Score=98.00  Aligned_cols=271  Identities=12%  Similarity=0.094  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV  206 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~  206 (815)
                      ..+.+.+.=+.+|.|.+|+|+.-+.+..   +.||+   ..-++.|+++|.++-..    +..  +.+.    ..--+|+
T Consensus        59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~----~n~--~~~~----~~~GWaI  128 (388)
T PRK09561         59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLL----FNY--ADPV----TREGWAI  128 (388)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhh----eec--CCCc----ccCcccc
Confidence            3445556667889999999998887642   33333   34567777888764222    211  1000    0011111


Q ss_pred             HHhhccHHHHHHHHHHh-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130          207 VHSLSRFPSIACLVSDL-RIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR  285 (815)
Q Consensus       207 ~ls~Ts~~vv~~iL~el-~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r  285 (815)
                      - ..|+.+-..-++.=+ +..+..+....++-|++||+.++++++++..    ++-+   ..+..+...++.+       
T Consensus       129 P-~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~---~~~L~~a~~~~~~-------  193 (388)
T PRK09561        129 P-AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----SDLS---MVSLGVAAVAIAV-------  193 (388)
T ss_pred             c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCcc---HHHHHHHHHHHHH-------
Confidence            1 123333222333222 2256677889999999999999988776552    2221   2222222221111       


Q ss_pred             HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc----hhHHHHhhhhhHHHhhH
Q 047130          286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL----GSALVEKLDPMVSGLFI  361 (815)
Q Consensus       286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~----~~~l~~kl~~~~~~l~l  361 (815)
                         .++.+|..    ++....+.++..  +.-+....-|+|+.++..++|+++|...+.    -+++++++++.+..+.+
T Consensus       194 ---l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~Il  264 (388)
T PRK09561        194 ---LAVLNLCG----VRRTSVYILVGV--VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLIL  264 (388)
T ss_pred             ---HHHHHHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeH
Confidence               12334432    233344444433  334445578999999999999999975322    35788999999999999


Q ss_pred             HHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhhhH
Q 047130          362 PLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKGIV  430 (815)
Q Consensus       362 PlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v  430 (815)
                      |+| |+..|..++-..+.....-   ....+++..++||.+|.+..++..          +++|++-..+|++-+.-=++
T Consensus       265 PlFAfaNAGV~l~~~~~~~~~~p---v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTm  341 (388)
T PRK09561        265 PLFAFANAGVSLQGVTLDGLTSP---LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTM  341 (388)
T ss_pred             HHHHhhcCCeeeccCcHHhhcCc---HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999 8888888832112211011   244556666788998888776643          47889988888865555677


Q ss_pred             HHHHHhhccc
Q 047130          431 EISTYNISRN  440 (815)
Q Consensus       431 ~li~~~~~~~  440 (815)
                      ++-+.+.+++
T Consensus       342 SLFIa~LAF~  351 (388)
T PRK09561        342 SIFIASLAFG  351 (388)
T ss_pred             HHHHHHHhcC
Confidence            8888888885

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=98.73  E-value=4.7e-09  Score=117.17  Aligned_cols=371  Identities=15%  Similarity=0.132  Sum_probs=224.4

Q ss_pred             HHHHHHHHHhhhC--CChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhc
Q 047130           84 VTHACHFVLKRFG--IPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKT  161 (815)
Q Consensus        84 ~~~~~~~llkrl~--~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~  161 (815)
                      ++.+...+..+++  .|.-.-.|+.|+++|-.+.+.-..-   .+..++    +.+=-.-+--++|-+|+-|.-+.+..+
T Consensus        53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s----~vFFlyLLPPIvlDAGYfMp~r~Ff~N  125 (670)
T KOG1966|consen   53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLES----DVFFLYLLPPIVLDAGYFMPNRAFFEN  125 (670)
T ss_pred             HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccc----cchhhhhcCHHHhcccccCccHHHHhc
Confidence            3344444444554  7888888999999886544331100   000011    011111122367889999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHH--HHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHH
Q 047130          162 GKKSLFTGLLTLLIPFLLGAA--ALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCAL  239 (815)
Q Consensus       162 ~k~~~~i~~~~~~ip~~~~~~--~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~  239 (815)
                      ..+.+..+..|.+.-.....+  .+......++.+ .+....++.|...|..++..+..+..|.. .|.-+=-++-++++
T Consensus       126 lgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESL  203 (670)
T KOG1966|consen  126 LGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESL  203 (670)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhh
Confidence            999999999998875543222  222222223322 34677888999999999999999999998 46667778889999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHH
Q 047130          240 VSEMIGLILTRSAIWIASIYHAPLH-----SAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLAL  314 (815)
Q Consensus       240 v~D~~~~~ll~v~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l  314 (815)
                      +||.+.++++-+......-++.+..     .....++...+.++.++.+...+.....|.+.+   ++-....+++.+..
T Consensus       204 lNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pY  280 (670)
T KOG1966|consen  204 LNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPY  280 (670)
T ss_pred             hcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHH
Confidence            9999999999766655433222110     001111111111222333333333333444332   33345678899999


Q ss_pred             HHHHHHHHhCchhhHHHHHHHhhcCCCC-----CchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHH
Q 047130          315 GAGYISDLFGQHVYFGPFVFGLAVPAGP-----PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTA  389 (815)
Q Consensus       315 ~~~~i~e~~G~~~~lGafvaGl~~~~~~-----~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~  389 (815)
                      .++..+|.+++|++++-.+.|+++...-     +....-++.+-...+..--++.|++.|.++--.  ...+.|.  .+.
T Consensus       281 laYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~--Fi~  356 (670)
T KOG1966|consen  281 LAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFA--FIC  356 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehh--hhh
Confidence            9999999999999999999999998641     111122233333445666778888889876433  2333442  344


Q ss_pred             HHHHHHHHHHHHHHHHhhhhc------CCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhH-----HHHHHHHHHH
Q 047130          390 VIVAVVVLAKVATTMIPPLYC------KVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQM-----FSFLTVEILV  458 (815)
Q Consensus       390 ~i~~~~~~~K~i~~~l~~~~~------~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~-----~~~lv~~~ll  458 (815)
                      +-++...+.|.+++...+++.      +++..|.+.++.+ +-||.+...+....-...+-....     +.++.+.+.+
T Consensus       357 ~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVfl  435 (670)
T KOG1966|consen  357 LTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFL  435 (670)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeee
Confidence            444555677999988887765      4678888888775 778888876654433233222222     2222233333


Q ss_pred             HHHHHHHHHHhhh
Q 047130          459 TAIIIPILVKFLY  471 (815)
Q Consensus       459 ~t~i~~~lv~~ly  471 (815)
                      ..+..-|+++++-
T Consensus       436 QGiTIkplvk~L~  448 (670)
T KOG1966|consen  436 QGITIKPLVKFLK  448 (670)
T ss_pred             cccchHHHHHHHc
Confidence            3334467777754

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=98.61  E-value=1.8e-07  Score=101.55  Aligned_cols=276  Identities=17%  Similarity=0.174  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVSMIQ---KTGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV  206 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~  206 (815)
                      ..+.+.+--+.+|.|.+|+|+.-+.+.   ++.||+   ..-++.|+++|.++-.    .+..  +.+    ...--+|+
T Consensus        55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl----~~n~--~~~----~~~~GW~I  124 (378)
T PF06965_consen   55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYL----AFNA--GGP----EAAHGWAI  124 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GG----SST----THHHHTSS
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHh----eeec--CCC----CcCceEEe
Confidence            445566667788999999999887764   233433   3456667777765421    1111  100    01111111


Q ss_pred             HHhhccHHHHHHHHHHhh-hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130          207 VHSLSRFPSIACLVSDLR-IINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR  285 (815)
Q Consensus       207 ~ls~Ts~~vv~~iL~el~-ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r  285 (815)
                       =..|+.+-..-++.=+| ..+..+....++-|++||+.++++++++..    ++.   ...+......++. +      
T Consensus       125 -P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i---~~~~L~~a~~~~~-~------  189 (378)
T PF06965_consen  125 -PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DGI---SLLWLLLAAAALL-L------  189 (378)
T ss_dssp             -SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------HHHHHHHHHHHH-H------
T ss_pred             -cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCC---CHHHHHHHHHHHH-H------
Confidence             12344444444443332 245667789999999999999988776653    221   1222222221111 1      


Q ss_pred             HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCch--------hHHHHhhhhhHH
Q 047130          286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLG--------SALVEKLDPMVS  357 (815)
Q Consensus       286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~--------~~l~~kl~~~~~  357 (815)
                         .+..+|..    ++....+..+..  +.-+....-|+|+.++..+.|+++|..++.+        +++++++++.+.
T Consensus       190 ---l~~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~  260 (378)
T PF06965_consen  190 ---LFVLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA  260 (378)
T ss_dssp             ---HHHHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred             ---HHHHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence               13334432    222334433332  3344455789999999999999999875442        378888999999


Q ss_pred             HhhHHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhh
Q 047130          358 GLFIPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMST  426 (815)
Q Consensus       358 ~l~lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~  426 (815)
                      .+.+|+| |+..|..++-..+.....-   ....+++-.++||.+|.+..++..          +++|++-..+|++-+.
T Consensus       261 ~~IlPlFAlaNAGV~l~~~~~~~~~~p---v~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGI  337 (378)
T PF06965_consen  261 FVILPLFALANAGVSLSGSSLGDLTSP---VTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGI  337 (378)
T ss_dssp             HTHHHHHHHHHS----SSS---THHHH---SSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT-
T ss_pred             hhhHHhHhheeCceEEecCchHhhhCh---HHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999999 8899998886544322111   233455556789999988887644          3677777777775445


Q ss_pred             hhhHHHHHHhhcccccccc
Q 047130          427 KGIVEISTYNISRNIESLT  445 (815)
Q Consensus       427 kG~v~li~~~~~~~~~~i~  445 (815)
                      -=++++-+.+.+++.....
T Consensus       338 GFTmSLFIa~LAF~~~~~~  356 (378)
T PF06965_consen  338 GFTMSLFIAGLAFDDPALQ  356 (378)
T ss_dssp             -HHHHHHHHHHHSTT-SSH
T ss_pred             HHHHHHHHHHHHcCChhhh
Confidence            5577888888888874333

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=98.55  E-value=3.1e-07  Score=88.37  Aligned_cols=128  Identities=13%  Similarity=0.087  Sum_probs=83.4

Q ss_pred             eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc--------cc---hhhhhHHHHHHHhcccCCCCCCE
Q 047130          667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS--------TN---WEKVLDSEVLKEVKPENNFNQRV  735 (815)
Q Consensus       667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~--------~~---~~~~~d~~~l~~~~~~~~~~~~v  735 (815)
                      +|+++++|.+..+.|+.+|.++++..+.+++++|+.++......        ..   ..++..++.++++..... ...+
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~   79 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV   79 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence            48999999999999999999999999999999999865221110        00   011112244554433221 1223


Q ss_pred             EEEEEEecC---cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccc-cchhhhhcCCCCCc--ccEEEEe
Q 047130          736 KYVVEMVNE---GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELG-IVGNCLVTEDLPGR--YSVLVVQ  809 (815)
Q Consensus       736 ~y~e~~V~~---g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG-~iGd~las~d~~~~--~SvLvvq  809 (815)
                      .+....++.   .+++++++++.+.  ||++||+|++      .|+.++    -+| -+.+.+.-.   ++  .+|||||
T Consensus        80 ~~~~~~~~g~~~~~~I~~~a~~~~~--dlIV~Gs~g~------~~l~~~----~~gssva~~Vi~~---a~~~c~Vlvv~  144 (146)
T cd01989          80 QCEDVVLEDDDVAKAIVEYVADHGI--TKLVMGASSD------NHFSMK----FKKSDVASSVLKE---APDFCTVYVVS  144 (146)
T ss_pred             eEEEEEEeCCcHHHHHHHHHHHcCC--CEEEEeccCC------Cceeec----ccCCchhHHHHhc---CCCCceEEEEe
Confidence            333344432   3457777776554  9999999987      566554    355 577887766   55  7999998


Q ss_pred             e
Q 047130          810 Q  810 (815)
Q Consensus       810 q  810 (815)
                      .
T Consensus       145 ~  145 (146)
T cd01989         145 K  145 (146)
T ss_pred             C
Confidence            4

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=98.52  E-value=1.7e-05  Score=82.93  Aligned_cols=260  Identities=12%  Similarity=0.130  Sum_probs=153.6

Q ss_pred             HHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcchHHHHHHHHHHHhhccHH
Q 047130          142 YILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGI-GMEDKMKLWVVTVVHSLSRFP  214 (815)
Q Consensus       142 li~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~-~~~~~~~~l~ig~~ls~Ts~~  214 (815)
                      ..+|.+++|+|+..+.+..   +++++   ..-++.++++|..+    +.++... ++ ....|.       +-+.|+.+
T Consensus        71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~-~p~~~~GWa-------IP~ATDiA  138 (390)
T COG3004          71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAG-DPATLEGWA-------IPMATDIA  138 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecC-ChhhhcCcC-------cccHHHHH
Confidence            4567788999999888753   33333   23455566666543    1122110 00 000111       11234444


Q ss_pred             HHHHHHHHh-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130          215 SIACLVSDL-RIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVK  293 (815)
Q Consensus       215 vv~~iL~el-~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~  293 (815)
                      -...+++=+ +..++.+.-..++-|++||+-++++.++...    ..-+   ..+.....++..  ..        -..+
T Consensus       139 FAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls---~~al~~a~~~i~--vL--------~~lN  201 (390)
T COG3004         139 FALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLS---MAALGIAALAIA--VL--------AVLN  201 (390)
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCcc---HHHHHHHHHHHH--HH--------HHHH
Confidence            334444333 3357778888999999999999887776553    2211   122222211111  11        1122


Q ss_pred             HcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc----hhHHHHhhhhhHHHhhHHHH-HHhh
Q 047130          294 QTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL----GSALVEKLDPMVSGLFIPLV-VTSA  368 (815)
Q Consensus       294 r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~----~~~l~~kl~~~~~~l~lPlF-F~~~  368 (815)
                      |..    ++....+++...++-.+  -..-|+|+.++..+.|+.+|-....    -+++++.+.+.+..+.+|+| |...
T Consensus       202 ~~~----v~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNA  275 (390)
T COG3004         202 RLG----VRRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANA  275 (390)
T ss_pred             HhC----chhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccC
Confidence            221    12223344444333222  3467999999999999999965332    35777888888889999999 8888


Q ss_pred             cccCC---hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhhhHHHHHH
Q 047130          369 SMRTN---LSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKGIVEISTY  435 (815)
Q Consensus       369 G~~~d---l~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~li~~  435 (815)
                      |.+++   .+.+.+.      ....+++-.++||.+|.+..++..          +.+|++-...+++-+..=++++-+.
T Consensus       276 Gvsl~g~~~~~l~s~------l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~  349 (390)
T COG3004         276 GVSLQGVSLSGLTSP------LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIA  349 (390)
T ss_pred             Ccccccccccccccc------hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHH
Confidence            98876   4444433      345666667789998888777643          4678888777775555556777777


Q ss_pred             hhccccc
Q 047130          436 NISRNIE  442 (815)
Q Consensus       436 ~~~~~~~  442 (815)
                      +.+++..
T Consensus       350 ~LAf~~~  356 (390)
T COG3004         350 SLAFGSE  356 (390)
T ss_pred             HHhcCCh
Confidence            7777653

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=98.50  E-value=9.3e-07  Score=85.12  Aligned_cols=141  Identities=16%  Similarity=0.101  Sum_probs=92.3

Q ss_pred             ceeEEeee-cCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhcccc---ccCCcccchHHHHHHHHHH
Q 047130          495 LRILACIY-RPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKK---TVSNRSYSENVILSFKLFE  570 (815)
Q Consensus       495 lrILv~i~-~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~---~~~~~~~~~~i~~af~~~~  570 (815)
                      -+|++++| .++....+.+.+...+.  .....++++++++-................   ........++..+..++..
T Consensus         6 ~~il~~~d~~s~~~~~a~~~a~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (154)
T COG0589           6 KKILVAVDVGSEAAEKALEEAVALAK--RLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA   83 (154)
T ss_pred             ceEEEEeCCCCHHHHHHHHHHHHHHH--hcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            57999999 99999999999999884  456777788888755432211110000000   0000112233444444433


Q ss_pred             HhcCcceE-EEEEEEecCCCCh-hHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEec
Q 047130          571 EKNWGTAC-VYPFTAISPPKLM-HEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILID  648 (815)
Q Consensus       571 ~~~~~~v~-v~~~~~vs~~~~m-~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvd  648 (815)
                      +.  .++. ++..+..+   +. .+.|+..|.+.++|+||||.+|+++.++.+      ++++.++|++++||||.++..
T Consensus        84 ~~--~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~l------lGsvs~~v~~~~~~pVlvv~~  152 (154)
T COG0589          84 EA--AGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRLL------LGSVAEKVLRHAPCPVLVVRS  152 (154)
T ss_pred             HH--cCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCcccccee------eehhHHHHHhcCCCCEEEEcc
Confidence            33  2333 35555444   55 699999999999999999999998887755      555556999999999998743

>PRK09982 universal stress protein UspD; Provisional

Probab=98.39  E-value=1.5e-06  Score=83.47  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=77.0

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc-------cccchhhhh---HHHHHHHhcccCCCCCC
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM-------ISTNWEKVL---DSEVLKEVKPENNFNQR  734 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~-------~~~~~~~~~---d~~~l~~~~~~~~~~~~  734 (815)
                      .++|+++.+|+++.+.|+++|.++|+.++++++++|++++....       ..++.++..   -++.+++...... ...
T Consensus         3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~   81 (142)
T PRK09982          3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK   81 (142)
T ss_pred             ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence            46899999999999999999999999999999999998642110       001111111   1134555443321 111


Q ss_pred             EEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130          735 VKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ  809 (815)
Q Consensus       735 v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  809 (815)
                      +   +..+..|   +++.+.+++.+.  |||+||+| +      +|+.+|-     | +-+-....   ++.+||||-
T Consensus        82 ~---~~~v~~G~p~~~I~~~A~~~~a--DLIVmG~~-~------~~~~~~~-----~-va~~V~~~---s~~pVLvv~  138 (142)
T PRK09982         82 T---KLRIERGEMPETLLEIMQKEQC--DLLVCGHH-H------SFINRLM-----P-AYRGMINK---MSADLLIVP  138 (142)
T ss_pred             c---eEEEEecCHHHHHHHHHHHcCC--CEEEEeCC-h------hHHHHHH-----H-HHHHHHhc---CCCCEEEec
Confidence            2   2222333   667777777555  99999976 5      5666652     3 33333333   677899873

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=98.34  E-value=2.1e-06  Score=80.57  Aligned_cols=127  Identities=21%  Similarity=0.277  Sum_probs=80.9

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccch-hh----hhHHHHHHH-----hcccCCCCCC
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNW-EK----VLDSEVLKE-----VKPENNFNQR  734 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~-~~----~~d~~~l~~-----~~~~~~~~~~  734 (815)
                      .+||+++++++++.++|+++|.++|+..+++++++|+.++......... ..    ..++.....     ....  ....
T Consensus         2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   79 (140)
T PF00582_consen    2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA--EGGI   79 (140)
T ss_dssp             TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh--hccc
Confidence            3699999999999999999999999999999999999975332111100 00    000000000     0000  1122


Q ss_pred             EEEEEEEecC-cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          735 VKYVVEMVNE-GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       735 v~y~e~~V~~-g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                      ..+......+ +.++.+++++  .++||+++|++++      .++.+|    -+|-+.+-++..   +..+||||
T Consensus        80 ~~~~~~~~~~~~~~i~~~~~~--~~~dliv~G~~~~------~~~~~~----~~gs~~~~l~~~---~~~pVlvv  139 (140)
T PF00582_consen   80 VIEVVIESGDVADAIIEFAEE--HNADLIVMGSRGR------SGLERL----LFGSVAEKLLRH---APCPVLVV  139 (140)
T ss_dssp             EEEEEEEESSHHHHHHHHHHH--TTCSEEEEESSST------TSTTTS----SSHHHHHHHHHH---TSSEEEEE
T ss_pred             eeEEEEEeeccchhhhhcccc--ccceeEEEeccCC------CCccCC----CcCCHHHHHHHc---CCCCEEEe
Confidence            3333333333 3456677766  4469999999986      445444    388888888886   67799987

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=98.33  E-value=1.3e-06  Score=81.54  Aligned_cols=123  Identities=16%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecCcH
Q 047130          667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQ  746 (815)
Q Consensus       667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~  746 (815)
                      ||+++.+|++..++|+.+|.++|+..+++++++++.+++.....++.++.++ ++.+..+. . +.+.....+..+  .+
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~-~~~~~~~~-~-~~~~~~~~~~~~--~~   75 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLA-EALRLAEE-L-GAEVVTLPGDDV--AE   75 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHH-HHHHHHHH-c-CCEEEEEeCCcH--HH
Confidence            5899999999999999999999999999999999987633211112222222 33333322 1 111111111111  24


Q ss_pred             HHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          747 ETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       747 ~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                      ++.+++++.+.  |++++|+|++      .++.++    -+|-..+-+...-  .+..|||+
T Consensus        76 ~I~~~~~~~~~--dllviG~~~~------~~~~~~----~~Gs~~~~v~~~a--~~~~v~v~  123 (124)
T cd01987          76 AIVEFAREHNV--TQIVVGKSRR------SRWREL----FRGSLVDRLLRRA--GNIDVHIV  123 (124)
T ss_pred             HHHHHHHHcCC--CEEEeCCCCC------chHHHH----hcccHHHHHHHhC--CCCeEEEe
Confidence            47777776555  9999999987      444443    5677777666652  25577775

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=98.30  E-value=3.9e-06  Score=78.85  Aligned_cols=127  Identities=15%  Similarity=0.149  Sum_probs=78.3

Q ss_pred             eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcccc--ccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecC
Q 047130          667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMI--STNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNE  744 (815)
Q Consensus       667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~--~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~  744 (815)
                      +|+++..|.++.+.++++|.++|+..+++++++|+.++.....  ..+.+++..++.++.........+ +........+
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~   79 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLG-VPVHTIIRID   79 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcC-CceEEEEEec
Confidence            5889999999999999999999999999999999986522110  001111111233333322211111 1111122222


Q ss_pred             ---cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130          745 ---GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ  809 (815)
Q Consensus       745 ---g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  809 (815)
                         .+++.+.+++.+  .||+++|.+++      +++.+    .-+|-.-+-+...   ++.+||||+
T Consensus        80 ~~~~~~I~~~a~~~~--~dlIV~G~~~~------~~~~~----~~lGs~~~~v~~~---~~~pvlvv~  132 (132)
T cd01988          80 HDIASGILRTAKERQ--ADLIIMGWHGS------TSLRD----RLFGGVIDQVLES---APCDVAVVK  132 (132)
T ss_pred             CCHHHHHHHHHHhcC--CCEEEEecCCC------CCccc----eecCchHHHHHhc---CCCCEEEeC
Confidence               245666666544  59999999987      33322    3578777777766   677999984

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK15005 universal stress protein F; Provisional

Probab=98.22  E-value=1.2e-05  Score=77.00  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=77.5

Q ss_pred             cceEEEEecCCcc--HHHHHHHHHHHhhCCCeEEEEEEeeecCccc--------cc----cchhhhhHHHHHHHhcccCC
Q 047130          665 SFRVAMIFLGGSD--DREALTLAKRMSQNTSINLTVFRFIVKTDEM--------IS----TNWEKVLDSEVLKEVKPENN  730 (815)
Q Consensus       665 ~~~I~~~f~gg~D--dreAL~~a~rma~~~~v~ltvl~~~~~~~~~--------~~----~~~~~~~d~~~l~~~~~~~~  730 (815)
                      .++|+++.+|.++  .+.|+++|.++|+..+++++++++.++....        ..    ++.+++. ++.++++..+..
T Consensus         2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~   80 (144)
T PRK15005          2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEA-KSQLEEIIKKFK   80 (144)
T ss_pred             CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHH-HHHHHHHHHHhC
Confidence            3689999999998  4799999999999999999999998641110        00    0011111 133344333221


Q ss_pred             CCCCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEE
Q 047130          731 FNQRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLV  807 (815)
Q Consensus       731 ~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLv  807 (815)
                       ...+.+. ..+..|   +++.+.+++  .++|||+||+| +      .|+.+|    =+|-..+-+...   ++.+|||
T Consensus        81 -~~~~~~~-~~v~~G~p~~~I~~~a~~--~~~DLIV~Gs~-~------~~~~~~----llGS~a~~vl~~---a~cpVlv  142 (144)
T PRK15005         81 -LPTDRVH-VHVEEGSPKDRILELAKK--IPADMIIIASH-R------PDITTY----LLGSNAAAVVRH---AECSVLV  142 (144)
T ss_pred             -CCCCceE-EEEeCCCHHHHHHHHHHH--cCCCEEEEeCC-C------CCchhe----eecchHHHHHHh---CCCCEEE
Confidence             1122222 223344   234444444  34699999987 4      355444    468888888877   7789999


Q ss_pred             E
Q 047130          808 V  808 (815)
Q Consensus       808 v  808 (815)
                      |
T Consensus       143 V  143 (144)
T PRK15005        143 V  143 (144)
T ss_pred             e
Confidence            7

>PRK10116 universal stress protein UspC; Provisional

Probab=98.17  E-value=6e-06  Score=78.99  Aligned_cols=124  Identities=13%  Similarity=0.216  Sum_probs=76.7

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCc-c---ccc--cchhhhh---HHHHHHHhcccCCCCCCE
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTD-E---MIS--TNWEKVL---DSEVLKEVKPENNFNQRV  735 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~-~---~~~--~~~~~~~---d~~~l~~~~~~~~~~~~v  735 (815)
                      .++|+++.++.++...|+++|.++|+..++++|++++..+.. .   ...  ++.+++.   -++++++...+. +   +
T Consensus         3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~   78 (142)
T PRK10116          3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA-D---Y   78 (142)
T ss_pred             CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-C---C
Confidence            479999999999999999999999999999999999874311 0   000  0111111   124455544332 1   1


Q ss_pred             EEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130          736 KYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ  809 (815)
Q Consensus       736 ~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  809 (815)
                      ......+..|   +++.+.+++  .++||+|+|+|++      +++++|      +...+-++..   ++.+||||-
T Consensus        79 ~~~~~~~~~G~~~~~I~~~a~~--~~~DLiV~g~~~~------~~~~~~------~s~a~~v~~~---~~~pVLvv~  138 (142)
T PRK10116         79 PIEKTFIAYGELSEHILEVCRK--HHFDLVICGNHNH------SFFSRA------SCSAKRVIAS---SEVDVLLVP  138 (142)
T ss_pred             CeEEEEEecCCHHHHHHHHHHH--hCCCEEEEcCCcc------hHHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence            1122233333   334455554  3469999999987      556554      2235555555   677999983

>PRK15456 universal stress protein UspG; Provisional

Probab=98.15  E-value=1.7e-05  Score=75.97  Aligned_cols=125  Identities=16%  Similarity=0.184  Sum_probs=77.5

Q ss_pred             cceEEEEecCCc--cHHHHHHHHHHHhhCCCeEEEEEEeeecCccc------cc-cchhh---hhHHHHHHHhcccCCCC
Q 047130          665 SFRVAMIFLGGS--DDREALTLAKRMSQNTSINLTVFRFIVKTDEM------IS-TNWEK---VLDSEVLKEVKPENNFN  732 (815)
Q Consensus       665 ~~~I~~~f~gg~--DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~------~~-~~~~~---~~d~~~l~~~~~~~~~~  732 (815)
                      .+||+++.+|++  ..+.|+++|.++|+.. .+++++|+.++....      .+ ++.++   +.-++.++++..+... 
T Consensus         2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-   79 (142)
T PRK15456          2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI-   79 (142)
T ss_pred             CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-
Confidence            468999999984  7899999999999875 589999998642110      00 11111   1112334444432211 


Q ss_pred             CCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          733 QRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       733 ~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                      +...+. ..+..|   +++.+.+++.+  .||+|||+|++       |+.++    =+|-..+-++..   ++.+||||
T Consensus        80 ~~~~v~-~~v~~G~~~~~I~~~a~~~~--~DLIVmG~~g~-------~~~~~----llGS~a~~v~~~---a~~pVLvV  141 (142)
T PRK15456         80 DPSRIK-QHVRFGSVRDEVNELAEELG--ADVVVIGSRNP-------SISTH----LLGSNASSVIRH---ANLPVLVV  141 (142)
T ss_pred             CCcceE-EEEcCCChHHHHHHHHhhcC--CCEEEEcCCCC-------Cccce----ecCccHHHHHHc---CCCCEEEe
Confidence            122222 223333   34555555544  49999999975       23332    478888888888   77899998

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.15  E-value=0.00034  Score=74.41  Aligned_cols=256  Identities=12%  Similarity=0.097  Sum_probs=146.9

Q ss_pred             HHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHH
Q 047130          142 YILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVS  221 (815)
Q Consensus       142 li~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~  221 (815)
                      +..++|-.|-++|++...+..||...+-+.=+.++.+++.+++.+++.    +..-....+.+-.+++.|.-..=..+..
T Consensus        51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~----~g~~Gls~laiiaa~~~~Ng~ly~al~~  126 (312)
T PRK12460         51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGA----EGIFGLSGLAIVAAMSNSNGGLYAALMG  126 (312)
T ss_pred             HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCc----ccccchHHHHHHHHHhcCcHHHHHHHHH
Confidence            456789999999999998888888887777778888777777766653    2222355666666777777676677777


Q ss_pred             HhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 047130          222 DLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPV  301 (815)
Q Consensus       222 el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~  301 (815)
                      |+| -++|.|-..  ...++|.=-+                      .++.   +..          .++. +.|    .
T Consensus       127 ~yG-~~~d~gA~~--~~sl~~GPf~----------------------tm~a---Lga----------~gLA-~ip----~  163 (312)
T PRK12460        127 EFG-DERDVGAIS--ILSLNDGPFF----------------------TMLA---LGA----------AGLA-NIP----I  163 (312)
T ss_pred             HcC-CHhhhhHHh--hhhhccCcHH----------------------HHHH---HHH----------HHHh-cCC----h
Confidence            777 344555221  1112221111                      1111   110          0111 111    0


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc
Q 047130          302 NSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD  381 (815)
Q Consensus       302 ~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~  381 (815)
                         .   .+               -+.+=|++.|+++.|..+   .+.+.+++= ..+.+|+|-+..|.++|++++.+. 
T Consensus       164 ---~---~l---------------v~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~-  217 (312)
T PRK12460        164 ---M---AL---------------VAALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA-  217 (312)
T ss_pred             ---H---HH---------------HHHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh-
Confidence               0   00               012345667777777432   233333332 345899999999999999998765 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH--HHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 047130          382 DNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALA--LIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVT  459 (815)
Q Consensus       382 ~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lg--l~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~  459 (815)
                      ++   ..+++.++.++.-...+++..|++|.+.+-+..+|  -.-+.=|-..++-.  .-..+..-+..-..+..++++|
T Consensus       218 G~---~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAa--dP~~~~~~~~Ataqvaa~vivT  292 (312)
T PRK12460        218 GL---AGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAA--DPSLAPVAAAATAQVAASVIVT  292 (312)
T ss_pred             Ch---HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHH
Confidence            33   23444444444555666666788898888877776  43222222222221  1222223333344455667777


Q ss_pred             HHHHHHHHHhhhcccc
Q 047130          460 AIIIPILVKFLYDPSR  475 (815)
Q Consensus       460 t~i~~~lv~~ly~p~~  475 (815)
                      .+++|.+..|++|+.+
T Consensus       293 ail~P~~t~~~~k~~~  308 (312)
T PRK12460        293 AILTPLLTSWVAKKEA  308 (312)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            7778888888886543

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=97.96  E-value=3.9e-05  Score=84.44  Aligned_cols=132  Identities=13%  Similarity=0.071  Sum_probs=83.7

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHh--
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK--  572 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~--  572 (815)
                      -|||+|+|+|+++..+++-+..+++....+.++|++|+++......    ..+      ......+++.+..++..+.  
T Consensus         6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~----~~~------~~~~~~eelle~~~~~~~~~l   75 (357)
T PRK12652          6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP----EGQ------DELAAAEELLERVEVWATEDL   75 (357)
T ss_pred             CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc----chh------HHHHHHHHHHHHHHHHHHHhh
Confidence            4799999999999999999999994311368999999998432110    000      0011123333333333221  


Q ss_pred             --cCcceEEEEEEEec-----CCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCce
Q 047130          573 --NWGTACVYPFTAIS-----PPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSV  643 (815)
Q Consensus       573 --~~~~v~v~~~~~vs-----~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsV  643 (815)
                        ...+++++..+...     ...+.++.|+++|+|+++|+|||+=.-+.      .++.+.+|.+-.. |.++-|.+
T Consensus        76 ~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~------~~~~~~~~~~~~~-~~~~~~~~  146 (357)
T PRK12652         76 GDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP------GGTAPMLQPLERE-LARAGITY  146 (357)
T ss_pred             hcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC------CCCCcccchHHHH-HHhcCCce
Confidence              11467887776552     12489999999999999999999954332      2344556666644 45555553

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=97.96  E-value=5.1e-05  Score=72.82  Aligned_cols=125  Identities=14%  Similarity=0.155  Sum_probs=75.4

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc--c---c--cchhhhhH---HHHHHHhcccCCCCCC
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM--I---S--TNWEKVLD---SEVLKEVKPENNFNQR  734 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~--~---~--~~~~~~~d---~~~l~~~~~~~~~~~~  734 (815)
                      .+||+++.+|.+..+.|+.+|..+|+.++++++++++..+....  .   .  ++.+++..   .+.++++..+. +   
T Consensus         3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---   78 (144)
T PRK15118          3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA-G---   78 (144)
T ss_pred             ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC-C---
Confidence            46999999999999999999999999999999999985321110  0   0  01111111   12233333221 1   


Q ss_pred             EEEEEEEecC---cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEeee
Q 047130          735 VKYVVEMVNE---GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQ  811 (815)
Q Consensus       735 v~y~e~~V~~---g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~  811 (815)
                      +...+..+..   .+++.+.+++.+  +||||+|+|++       ++.      .+|-.-+-+...   ++.+||||...
T Consensus        79 ~~~~~~~~~~G~p~~~I~~~a~~~~--~DLIV~Gs~~~-------~~~------~lgSva~~v~~~---a~~pVLvv~~~  140 (144)
T PRK15118         79 YPITETLSGSGDLGQVLVDAIKKYD--MDLVVCGHHQD-------FWS------KLMSSARQLINT---VHVDMLIVPLR  140 (144)
T ss_pred             CCceEEEEEecCHHHHHHHHHHHhC--CCEEEEeCccc-------HHH------HHHHHHHHHHhh---CCCCEEEecCC
Confidence            1112223322   345677776654  59999999952       221      145455555554   67799999743

>cd00293 USP_Like Usp: Universal stress protein family

Probab=97.93  E-value=0.0001  Score=68.24  Aligned_cols=126  Identities=22%  Similarity=0.306  Sum_probs=76.2

Q ss_pred             eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcccc---ccchhhhhHHHHHHHhcccCCC-CCCEEEEEEEe
Q 047130          667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMI---STNWEKVLDSEVLKEVKPENNF-NQRVKYVVEMV  742 (815)
Q Consensus       667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~---~~~~~~~~d~~~l~~~~~~~~~-~~~v~y~e~~V  742 (815)
                      +|++++.+++..+.++.+|.+||+..+.+++++++..+.....   .+....+. ++.++++...... .-.+.+.-..-
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~   79 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEA-RALLEALREALAEAGVKVETVVLEG   79 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHH-HHHHHHHHHHHhcCCCceEEEEecC
Confidence            5789999999999999999999999999999999986532210   00111122 2444444432111 11222221122


Q ss_pred             cCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          743 NEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       743 ~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                      ....++.+.+++  .++|++++|++++      .++.+|    -.|.+.+-|...   ++.+||+|
T Consensus        80 ~~~~~i~~~~~~--~~~dlvvig~~~~------~~~~~~----~~~~~~~~ll~~---~~~pvliv  130 (130)
T cd00293          80 DPAEAILEAAEE--LGADLIVMGSRGR------SGLRRL----LLGSVAERVLRH---APCPVLVV  130 (130)
T ss_pred             CCHHHHHHHHHH--cCCCEEEEcCCCC------Ccccee----eeccHHHHHHhC---CCCCEEeC
Confidence            223456666666  4469999999876      222221    457777777765   55577664

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=97.79  E-value=0.065  Score=59.87  Aligned_cols=302  Identities=14%  Similarity=0.117  Sum_probs=155.6

Q ss_pred             CCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHH
Q 047130           96 GIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLI  175 (815)
Q Consensus        96 ~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~i  175 (815)
                      .+|.++--++.|+++..  +|.++       ++.+.+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. +..-.+
T Consensus        24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~   93 (378)
T PF05684_consen   24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV   93 (378)
T ss_pred             hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence            47888888888888886  45551       123456778888888888888888899999999999887544 333344


Q ss_pred             HHHHHHHHHHHHHHhh-ccCcchHHHHHHHHHHHhhc------cHHHHHHHHHHhhhccChhHHHHHHHHH-HHHHHHHH
Q 047130          176 PFLLGAAALEKMSRIL-GIGMEDKMKLWVVTVVHSLS------RFPSIACLVSDLRIINSELGRLGLSCAL-VSEMIGLI  247 (815)
Q Consensus       176 p~~~~~~~~~~l~~~~-~~~~~~~~~~l~ig~~ls~T------s~~vv~~iL~el~ll~s~~g~lals~a~-v~D~~~~~  247 (815)
                      ..++|..+++.+.+.. ++  ..|.    ++.+++-|      .+.-+...   ++   .+  .-.+++++ .|+++.-+
T Consensus        94 g~viG~~va~~l~~~~l~~--~~wk----~ag~l~gsyiGGs~N~~Av~~a---l~---~~--~~~~~a~~aaDnv~~~~  159 (378)
T PF05684_consen   94 GTVIGAVVAFLLFGGFLGP--EGWK----IAGMLAGSYIGGSVNFVAVAEA---LG---VS--DSLFAAALAADNVVMAL  159 (378)
T ss_pred             HHHHHHHHHHHHHhhcccc--hHHH----HHHHHHhcccCchhHHHHHHHH---HC---CC--HHHHHHHHHHHHHHHHH
Confidence            4555666666554432 21  1222    22223222      22233332   22   22  23444444 44444444


Q ss_pred             HHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCchhHHHHHHHHHHHHHHHH
Q 047130          248 LTRSAIWIASIY-----HAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQ--TPEGKPVNSLHIHNIIMLALGAGYIS  320 (815)
Q Consensus       248 ll~v~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r--~~~~~~~~e~~~~~~l~~~l~~~~i~  320 (815)
                      .+.+...+....     ...+...-..-.                -....+.  .+++++.. ......+...+....++
T Consensus       160 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s  222 (378)
T PF05684_consen  160 WFAFLLALPPFARKFDRWTKADTSSIEAL----------------EEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALS  222 (378)
T ss_pred             HHHHHHHHhhhhHHhhhccCCCccccchh----------------hhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHH
Confidence            444444332200     000000000000                0000000  01111111 22333333333332222


Q ss_pred             ----HHh-----Cch----hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130          321 ----DLF-----GQH----VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS  387 (815)
Q Consensus       321 ----e~~-----G~~----~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~  387 (815)
                          +.+     +.+    .++-....|++..- +|..+.+ .--+++ ..+++-+||+.+|++.|+..+.+. ++    
T Consensus       223 ~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~a-p~----  294 (378)
T PF05684_consen  223 HALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDA-PS----  294 (378)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHh-HH----
Confidence                222     111    22233344444432 3444443 233344 578888999999999999988874 32    


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchh
Q 047130          388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ  447 (815)
Q Consensus       388 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~  447 (815)
                      ..++.++.+..-.+..+..++++|.|..+...-+- =|.-|.........+++..+..+-
T Consensus       295 ~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pg  353 (378)
T PF05684_consen  295 LFLFGFIILAIHLLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPG  353 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHH
Confidence            33445555667888888999999999987766554 356566655555555554444443

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.63  E-value=0.0066  Score=64.44  Aligned_cols=256  Identities=15%  Similarity=0.113  Sum_probs=139.5

Q ss_pred             HHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC--cchHHHHHHHHHHHhhccHHHHHH
Q 047130          141 GYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIG--MEDKMKLWVVTVVHSLSRFPSIAC  218 (815)
Q Consensus       141 gli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~--~~~~~~~l~ig~~ls~Ts~~vv~~  218 (815)
                      -+..++|-.|-++|++...+..||...+-+.=+++..+++.+++.+++.. +.+  ..-....+.+-.+++.+....=..
T Consensus        50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~-Gi~~g~f~GlS~LAiiaa~~~~NggLY~a  128 (314)
T PF03812_consen   50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPE-GIQSGFFLGLSALAIIAAMTNSNGGLYLA  128 (314)
T ss_pred             HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCcc-ccccccccchHHHHHHHHHhcCCHHHHHH
Confidence            34567899999999999999999998888888888888888777766541 100  012345666667777777777777


Q ss_pred             HHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 047130          219 LVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEG  298 (815)
Q Consensus       219 iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~  298 (815)
                      +..|+| -++|.|-  .+...++|.=.+.++++-.+    +.                                     .
T Consensus       129 L~~~yG-d~~D~gA--~~i~sl~~GPf~tMl~LG~s----G~-------------------------------------a  164 (314)
T PF03812_consen  129 LMGQYG-DEEDVGA--FSILSLNDGPFFTMLALGAS----GL-------------------------------------A  164 (314)
T ss_pred             HHHHhC-CHHHhHH--HHHHHhhhhHHHHHHHHhhc----cc-------------------------------------c
Confidence            777776 2444442  11111222211111111000    00                                     0


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhc
Q 047130          299 KPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIK  378 (815)
Q Consensus       299 ~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~  378 (815)
                       ..+   +..                +=..+=|++.|+++.|-.   +++.+-+.+- ...++|+|-...|..+|+..+.
T Consensus       165 -~ip---~~~----------------lv~~llP~iiG~iLGNLD---~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~  220 (314)
T PF03812_consen  165 -NIP---WMS----------------LVAALLPIIIGMILGNLD---PDFRKFLAPG-VPILIPFFGFALGAGINLSNII  220 (314)
T ss_pred             -CCC---HHH----------------HHHHHHHHHHHHHHhcCC---HHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHH
Confidence             000   000                012244788888888864   3444444433 5789999999999999999887


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCChHHHHHHHHHHhhhhhHHH----HHHhhcccccccchhHHHHHH
Q 047130          379 LLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC-KVPKRDAFALALIMSTKGIVEI----STYNISRNIESLTDQMFSFLT  453 (815)
Q Consensus       379 ~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~-~~~~~~~~~lgl~m~~kG~v~l----i~~~~~~~~~~i~~~~~~~lv  453 (815)
                      .. +..   .+++-++.++.--...++.-++. |-+-.-    |+..++-+.-+.    +++..--+.....+..-..+.
T Consensus       221 ~a-Gl~---GIlLgv~~~~vtg~~~~~~dr~i~~~~g~a----G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvA  292 (314)
T PF03812_consen  221 KA-GLS---GILLGVIVVVVTGIPLYLADRLILKGNGVA----GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVA  292 (314)
T ss_pred             Hh-Ccc---hHHHHHHHHHHHhHHHHHHHHHHcCCCCce----eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHH
Confidence            55 221   12222222222223344444442 222222    333333333222    222222222333334445566


Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q 047130          454 VEILVTAIIIPILVKFLYDP  473 (815)
Q Consensus       454 ~~~ll~t~i~~~lv~~ly~p  473 (815)
                      .++++|.+++|.+..|++|+
T Consensus       293 aavIvTail~P~lt~~~~kr  312 (314)
T PF03812_consen  293 AAVIVTAILTPILTSWWAKR  312 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            77778888888888887754

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=97.30  E-value=0.001  Score=73.41  Aligned_cols=104  Identities=12%  Similarity=0.061  Sum_probs=64.3

Q ss_pred             CcceEEEEecCCccHHHHHHHHHHHhhCC--CeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCC-----CCCCEE
Q 047130          664 SSFRVAMIFLGGSDDREALTLAKRMSQNT--SINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENN-----FNQRVK  736 (815)
Q Consensus       664 ~~~~I~~~f~gg~DdreAL~~a~rma~~~--~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~~v~  736 (815)
                      ..+||+++++|.+..+.|+++|..+|+..  ++++|++|++++.......+...+..++.+++.+....     ....+.
T Consensus         4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~   83 (357)
T PRK12652          4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVT   83 (357)
T ss_pred             ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Confidence            36799999999999999999999999985  69999999986522111111111111122322222110     012344


Q ss_pred             EEEEEec---------C-cHHHHHHHHhhCCCccEEEEcccCC
Q 047130          737 YVVEMVN---------E-GQETLAKIQSVVPKYDLVIVGRRDN  769 (815)
Q Consensus       737 y~e~~V~---------~-g~~~~~~i~~~~~~~DLiivG~~~~  769 (815)
                      +....+.         + .+++++++++.+  +||||||..-.
T Consensus        84 ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~--aDLIVm~~~~~  124 (357)
T PRK12652         84 IETALLGTDEYLFGPGDYAEVLIAYAEEHG--IDRVVLDPEYN  124 (357)
T ss_pred             eEEEEEeccccccCCCCHHHHHHHHHHHcC--CCEEEECCCCC
Confidence            4444432         2 456777777754  59999999754

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.25  E-value=0.012  Score=62.11  Aligned_cols=259  Identities=12%  Similarity=0.141  Sum_probs=131.0

Q ss_pred             HHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--chHHHHHHHHHHHhhccHHHHHHH
Q 047130          142 YILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGM--EDKMKLWVVTVVHSLSRFPSIACL  219 (815)
Q Consensus       142 li~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~--~~~~~~l~ig~~ls~Ts~~vv~~i  219 (815)
                      +..++|-.|-++|++...+..||...+-+.=++++.+++.+++.+++.. +.+.  .-....+.+-.+++.|.-..=+.+
T Consensus        51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~-Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL  129 (314)
T TIGR00793        51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPED-GVEVGFFAGLSTLALVAAMDMTNGGLYASI  129 (314)
T ss_pred             HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcC-CccccceeccHHHHHHHHHhCCcHHHHHHH
Confidence            4567899999999999888888887777777778888777777766531 0000  113445555556666665655666


Q ss_pred             HHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 047130          220 VSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGK  299 (815)
Q Consensus       220 L~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~  299 (815)
                      ..|+| -++|.|-..  ...++|.=-+.+++                         +..                  .| 
T Consensus       130 ~~qyG-d~~D~gA~~--i~sl~~GPf~TMi~-------------------------LG~------------------sG-  162 (314)
T TIGR00793       130 MQQYG-TKEEAGAFV--LMSLESGPLMTMVI-------------------------LGT------------------AG-  162 (314)
T ss_pred             HHHcC-CHhhhhhhh--hhhhccCcHHHHHH-------------------------Hhh------------------cc-
Confidence            66666 244444211  11122211111100                         000                  00 


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcc
Q 047130          300 PVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKL  379 (815)
Q Consensus       300 ~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~  379 (815)
                       ..+..+..                +=..+=|++.|+++.|-.+   ++.+-+.+- ...++|+|-...|..+|++.+..
T Consensus       163 -lA~ip~~~----------------lv~~ilPlliG~ilGNLD~---~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~  221 (314)
T TIGR00793       163 -IASFEPHV----------------FVGAVLPFLVGFALGNLDP---ELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQ  221 (314)
T ss_pred             -CCCCCHHH----------------HHHHHHHHHHHHHHhcCCH---HHHHHhccC-CCeeeehhhhhhcCCCCHHHHHH
Confidence             00000000                0122447888888888643   343334333 46789999999999999988765


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHH
Q 047130          380 LDDNLAKSTAVIVAVVVLAKVATTMIPPLYCK-VPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILV  458 (815)
Q Consensus       380 ~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~-~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll  458 (815)
                      . +..   .+++-+...+.--...++.-++.+ -+..-+...+-.-..--.+..+++..--+.....+..-..+..++++
T Consensus       222 a-Gl~---GIlLGl~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaaviv  297 (314)
T TIGR00793       222 T-GLL---GILLGVSVIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIV  297 (314)
T ss_pred             h-Ccc---hHHHHHHHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHH
Confidence            4 221   112112222223344455555542 22222222221111111112223322222222333333334556667


Q ss_pred             HHHHHHHHHHhhhcc
Q 047130          459 TAIIIPILVKFLYDP  473 (815)
Q Consensus       459 ~t~i~~~lv~~ly~p  473 (815)
                      |.+++|.+..|++|+
T Consensus       298 TaiL~Pilta~~~kr  312 (314)
T TIGR00793       298 TSLLVPIATVWWSKK  312 (314)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            777778888887764

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=97.23  E-value=0.28  Score=53.84  Aligned_cols=85  Identities=18%  Similarity=0.181  Sum_probs=56.2

Q ss_pred             HhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHH
Q 047130           92 LKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLL  171 (815)
Q Consensus        92 lkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~  171 (815)
                      +++.+++..+--|+.|+++|+......+.   ..-| ...-.-+.+-++|.+    +.|.++++.++.+.|.+.+.+...
T Consensus        26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~   97 (335)
T TIGR00698        26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL   97 (335)
T ss_pred             hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence            34568999999999999999854221211   0000 111233466678877    679999999999999988777666


Q ss_pred             HHHHHHHHHHHHH
Q 047130          172 TLLIPFLLGAAAL  184 (815)
Q Consensus       172 ~~~ip~~~~~~~~  184 (815)
                      .+...+.++..++
T Consensus        98 ~v~~~~~~~~~~g  110 (335)
T TIGR00698        98 ILTSTFFLTVFLG  110 (335)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555544443

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=97.14  E-value=0.57  Score=51.07  Aligned_cols=332  Identities=16%  Similarity=0.210  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCCh--hHH-HHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhc
Q 047130           75 ELQIIVAFAVTHACHFVLKRFGIPM--IAS-QITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGV  151 (815)
Q Consensus        75 ll~i~lil~~~~~~~~llkrl~~P~--iv~-~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gl  151 (815)
                      ..|.++.+.++...++++..+++|.  ..| -+++|++.+-  .+.      +      ...-+.+...|.+.+=-.+|.
T Consensus         8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~--~~~------~------l~~P~~l~~~~q~ilG~~ig~   73 (352)
T COG3180           8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGL--RGL------T------LPLPRGLFKAGQVILGIMIGA   73 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--ccc------c------ccCChHHHHHHHHHHHHHHhh
Confidence            5678888888889999999998864  445 5566666552  111      0      111144556666777778999


Q ss_pred             ccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhH
Q 047130          152 KMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELG  231 (815)
Q Consensus       152 e~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g  231 (815)
                      .+..+.+... ++-+.+.+...+.+...+...++++.++-..   +...+++-..--..+   ....+-+|.|   .+..
T Consensus        74 ~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~---~~~Ta~~gs~PGgas---~m~~iA~d~g---Ad~~  143 (352)
T COG3180          74 SLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFSIL---PGNTAFLGSSPGGAS---AMVSIAQDYG---ADLR  143 (352)
T ss_pred             hcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhcCC---CcchhhHhcCCchHH---HHHHHHHHhC---CChh
Confidence            9988876433 3334444555556666666666666653211   111221111111111   1111113333   1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCchhH
Q 047130          232 RLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEG------KPVNSLH  305 (815)
Q Consensus       232 ~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~------~~~~e~~  305 (815)
                      +.+                                +...+-.+.++..+-++.+....  .++..+.      .+.....
T Consensus       144 ~VA--------------------------------l~Q~lRvl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~  189 (352)
T COG3180         144 LVA--------------------------------LMQYLRVLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLI  189 (352)
T ss_pred             HHH--------------------------------HHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHH
Confidence            111                                11111111111111122221110  0111111      1111122


Q ss_pred             HHHHHHHHHHHHHHHHHhCch--hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchh
Q 047130          306 IHNIIMLALGAGYISDLFGQH--VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDN  383 (815)
Q Consensus       306 ~~~~l~~~l~~~~i~e~~G~~--~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~  383 (815)
                      +.+.....++.+.+...+++.  .++|+++.|..+.-+....-++-+-+    ..+-.-+.-..+|.++|-..+......
T Consensus       190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl----~~va~~~iG~~IG~~f~~~~l~~~~r~  265 (352)
T COG3180         190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL----LAVAQALIGALIGSRFDRSILREAKRL  265 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH----HHHHHHHHHHHHcccccHHHHHHhHhh
Confidence            444555566666666766664  57889998888876631221111111    122233445678999997666544322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHH
Q 047130          384 LAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIII  463 (815)
Q Consensus       384 ~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~  463 (815)
                      .. ...+.++..++.-...+++..++.+.|+.++..   ..+|-|.-++.....+.+..  .+-+-+.=++=.++...+.
T Consensus       266 ~~-~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ad--~a~V~a~q~lRll~il~i~  339 (352)
T COG3180         266 LP-AILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGAD--PAFVMALQVLRLLFILLLG  339 (352)
T ss_pred             cc-hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHH
Confidence            11 234444555566777788888899999988754   35788888877666554422  1112222233333444456


Q ss_pred             HHHHHhhhccc
Q 047130          464 PILVKFLYDPS  474 (815)
Q Consensus       464 ~~lv~~ly~p~  474 (815)
                      |++.|++.|.+
T Consensus       340 p~l~r~l~~~~  350 (352)
T COG3180         340 PALARFLSKRA  350 (352)
T ss_pred             HHHHHHHHHHc
Confidence            88888876544

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=97.02  E-value=0.47  Score=51.21  Aligned_cols=154  Identities=14%  Similarity=0.116  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcc
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSR  212 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts  212 (815)
                      +++..-.+.+.++||..|+.+..+.+++..|+.... +.+....|++.=++++.+...+.     ...-+..|..+-.+.
T Consensus        35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~~~-----l~~~l~~Gl~ll~~~  108 (319)
T COG0385          35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKLFP-----LPPELAVGLLLLGCC  108 (319)
T ss_pred             hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHhHHheeeC
Confidence            344445788999999999999999988765544322 23333344433333333333222     122344444443322


Q ss_pred             HHHHHHH-HHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130          213 FPSIACL-VSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHA--PLHSAYRNLGIMVVYLLAVVFVVRPAML  289 (815)
Q Consensus       213 ~~vv~~i-L~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~v~r~~~~  289 (815)
                      +..+.+. ++-  +.+.+.. ++++.+.++.+++.++.-+...+.-+++.  +.....+.++..++.=.+.+.+.|+...
T Consensus       109 Pggv~S~~~t~--lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~  185 (319)
T COG0385         109 PGGVASNAMTY--LAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLP  185 (319)
T ss_pred             CCchhHHHHHH--HhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222221 111  1233333 66677788888888776444333222211  3344556666555555566777788776


Q ss_pred             HHHHHc
Q 047130          290 WVVKQT  295 (815)
Q Consensus       290 ~l~~r~  295 (815)
                      ...++.
T Consensus       186 ~~~~~~  191 (319)
T COG0385         186 KWVERL  191 (319)
T ss_pred             HHHHHH
Confidence            555553

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=97.01  E-value=0.14  Score=56.10  Aligned_cols=121  Identities=11%  Similarity=0.056  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhC-----chhhHHHHHHHhhcCCCCCc--hhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHH
Q 047130          314 LGAGYISDLFG-----QHVYFGPFVFGLAVPAGPPL--GSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAK  386 (815)
Q Consensus       314 l~~~~i~e~~G-----~~~~lGafvaGl~~~~~~~~--~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~  386 (815)
                      .+..++.++++     +....++++.|.++.+--+.  ..++.++..+.+.++-+-+|.++.=|++.+..+.+.. ..  
T Consensus       232 ~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~-lp--  308 (404)
T COG0786         232 AVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLA-LP--  308 (404)
T ss_pred             HHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-cc--
Confidence            34445666655     46788999999999885211  1124444445557888889988888999998887652 11  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhh-hhhHHHHHHhh
Q 047130          387 STAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMST-KGIVEISTYNI  437 (815)
Q Consensus       387 ~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~-kG~v~li~~~~  437 (815)
                      .++++.+-..+.-+.+.+...|..+-+...+...+.-+.. -|...-+++++
T Consensus       309 l~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM  360 (404)
T COG0786         309 LLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM  360 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence            2333333344556666777778888777666554443332 25555566655

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=96.93  E-value=0.46  Score=53.11  Aligned_cols=95  Identities=14%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             chhhHHHHHHHhhcCCCCCc--hhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHH-HHHHHHHHHHH
Q 047130          325 QHVYFGPFVFGLAVPAGPPL--GSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAV-IVAVVVLAKVA  401 (815)
Q Consensus       325 ~~~~lGafvaGl~~~~~~~~--~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~-i~~~~~~~K~i  401 (815)
                      +....++++.|+++.+.-+.  ..++..+.-+...++.+-+|.+..=+.+++..+.+...    ..++ +++-.++.=+.
T Consensus       247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~----Plliil~~q~i~~~~f  322 (368)
T PF03616_consen  247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYAL----PLLIILAVQTILMVLF  322 (368)
T ss_pred             CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            45678999999999874210  01122222233456666677777778899988886521    2222 23333334445


Q ss_pred             HHHHhhhhcCCChHHHHHHHHHH
Q 047130          402 TTMIPPLYCKVPKRDAFALALIM  424 (815)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~lgl~m  424 (815)
                      ..++..|.++-++ |+..++...
T Consensus       323 ~~fv~fr~~gkdy-daavm~~G~  344 (368)
T PF03616_consen  323 AYFVTFRVMGKDY-DAAVMSAGF  344 (368)
T ss_pred             HHHHhhhhhCCCh-hHHHHhhhh
Confidence            5666677888776 666654443

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=96.65  E-value=0.1  Score=56.94  Aligned_cols=136  Identities=14%  Similarity=0.105  Sum_probs=71.9

Q ss_pred             HHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047130          330 GPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLY  409 (815)
Q Consensus       330 GafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~  409 (815)
                      .+++.|..+.+-   .+.+.+... ....+++|++-...|.++|+.++... ++   ...++.+..++......+...|+
T Consensus       178 lplliG~~lgnl---~~~l~~~~~-~Gi~~lLp~~~~~lG~~l~lq~i~~~-G~---~GilL~~~~~~~t~~~~~~~~Rl  249 (326)
T PRK05274        178 LPLLVGFILGNL---DPELRQFLG-KAVPVLIPFFAFALGNGIDLGTIITA-GL---SGILLGVAVVAVTGIPLYLADRL  249 (326)
T ss_pred             HHHHHHHHHHhH---HHhhHHHhc-CCcEEEHHHHHHHHhcceeHhHHHhc-CC---cchhhhhhHhhccchhhHhHhhe
Confidence            678888888874   223333333 33466999999999999999888654 33   22333333344445545555577


Q ss_pred             cCCChH---HHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 047130          410 CKVPKR---DAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSR  475 (815)
Q Consensus       410 ~~~~~~---~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~  475 (815)
                      ++....   -+...+-.-+.-|-..  ++...-..+-..++.-..+..++++++++.|.+..+++|+.+
T Consensus       250 ~~~~~g~~g~a~~ttaG~aic~pAA--vaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~  316 (326)
T PRK05274        250 IGGGNGVAGAAAGSTAGNAVATPAA--VAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVG  316 (326)
T ss_pred             eecCCCcchHHHHHHHHHHHHHHHH--HHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            753322   1222121111111112  111222222334444444555566777777888887775544

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=96.61  E-value=0.38  Score=53.74  Aligned_cols=327  Identities=14%  Similarity=0.151  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhh---cccccccccccccccccCCCchhHHHHHHHHHHHHHHHH--
Q 047130           74 LELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLI---LGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFL--  148 (815)
Q Consensus        74 ~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGil---lGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~--  148 (815)
                      ++--+.++++++.+++++=+|  +|-+=.|+=+|.+   ++|+.+-..     .++|++..+..+.+-+-.=.+.+|.  
T Consensus        30 m~g~~a~~~v~G~~l~~IG~r--iPi~k~yiGGg~il~~f~ps~Lv~~-----~~ip~~~~~~v~~fm~~~~Fl~ffIa~  102 (414)
T PF03390_consen   30 MIGGFAVMMVLGFLLGEIGDR--IPILKDYIGGGAILCIFVPSALVYF-----GLIPESVVEAVTNFMKGSNFLYFFIAA  102 (414)
T ss_pred             hHHHHHHHHHHHHHHHHHHhh--ChhhhccCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHhccCChHHHHHHH
Confidence            344455555556666665553  4444444444433   355543322     1334333333333322211112222  


Q ss_pred             --hh--cccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHH-----hhccHHHHHHH
Q 047130          149 --TG--VKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVH-----SLSRFPSIACL  219 (815)
Q Consensus       149 --~G--le~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~l-----s~Ts~~vv~~i  219 (815)
                        .|  +.||.+.+.|...|-+..-+.+.+..++++.+++.+++...      ....+.+++-.     ..-+.|...-.
T Consensus       103 LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~------~~~i~~i~lPIMgGG~GaGavPLS~~Y  176 (414)
T PF03390_consen  103 LIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF------KDAIFYIVLPIMGGGMGAGAVPLSQIY  176 (414)
T ss_pred             HHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHHHhhhcCCCccccHhHHHHHH
Confidence              23  48899999999888888888888888888887777776521      12222222211     11112211111


Q ss_pred             HHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CC------C---h-------hHHHHHHHHHHHHHH
Q 047130          220 VSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIY-----HA------P---L-------HSAYRNLGIMVVYLL  278 (815)
Q Consensus       220 L~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~-----~~------~---~-------~~~~~~~~~~i~~~~  278 (815)
                      =+-++.-.+++-..++.+.++.++++++.-+++.-+....     ++      +   .       ......+. .-+++.
T Consensus       177 a~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g-~Gllla  255 (414)
T PF03390_consen  177 AEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMG-AGLLLA  255 (414)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHH-HHHHHH
Confidence            1112333444555666777777777777666555443211     00      0   0       00011121 112233


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHH
Q 047130          279 AVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSG  358 (815)
Q Consensus       279 ~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~  358 (815)
                      +.+|.+..++..++       ..+ .+.+.++..++.     ..+           | ++|+   .-++=..+...+...
T Consensus       256 ~~~y~~G~ll~~~i-------~ih-~~a~mIi~~~i~-----K~~-----------~-lvP~---~~e~~a~~~~~f~~~  307 (414)
T PF03390_consen  256 CSFYILGVLLSKLI-------GIH-AYAWMIILVAIV-----KAF-----------G-LVPE---SLEEGAKQWYKFFSK  307 (414)
T ss_pred             HHHHHHHHHHHHhc-------CCc-HHHHHHHHHHHH-----HHh-----------C-cCCH---HHHHHHHHHHHHHHH
Confidence            33444444443333       122 122222211111     111           1 1222   222334455556566


Q ss_pred             hhHHHHHHhhccc-CChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHH-HHHHHHHhhh-hhHHHHHH
Q 047130          359 LFIPLVVTSASMR-TNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDA-FALALIMSTK-GIVEISTY  435 (815)
Q Consensus       359 l~lPlFF~~~G~~-~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~-~~lgl~m~~k-G~v~li~~  435 (815)
                      -+.+-..+-+|+. +|+.++....++   .-+++++..+++-.+++++..++.|+-+-|+ +.-|+.|+.+ |.-|+.+.
T Consensus       308 ~lt~~lLvgiGv~~~~l~~l~~a~t~---~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVL  384 (414)
T PF03390_consen  308 NLTWPLLVGIGVAYTDLNDLIAAFTP---QYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVL  384 (414)
T ss_pred             HHHHHHHHHHHhhhCcHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchhe
Confidence            6666677778888 999988776555   3456666667788899999999999665555 5667677766 55567777


Q ss_pred             hhcccccccc
Q 047130          436 NISRNIESLT  445 (815)
Q Consensus       436 ~~~~~~~~i~  445 (815)
                      +.+....++.
T Consensus       385 sAa~RM~Lmp  394 (414)
T PF03390_consen  385 SAANRMELMP  394 (414)
T ss_pred             ehhhhccccc
Confidence            7666666553

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=96.55  E-value=0.26  Score=53.43  Aligned_cols=81  Identities=22%  Similarity=0.342  Sum_probs=57.1

Q ss_pred             hhCCChhHHHHHhhhhcccccccccccccccccCCCchh-HHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHH
Q 047130           94 RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLG-TLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLT  172 (815)
Q Consensus        94 rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~-~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~  172 (815)
                      ...++..+--|+.|+++|+..++.-+.+.      +..+ .-+.+-++|.+    +.|.++++..+.+.+.+.+.+....
T Consensus        23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~------~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~   92 (305)
T PF03601_consen   23 LPGLGALLIAILLGMLIGNLFFGLPARFK------PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIV   92 (305)
T ss_pred             ccCccHHHHHHHHHHHHhhhccCCcHHHH------hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHH
Confidence            46788889999999999973344322211      1122 23466678877    6799999999999999888887777


Q ss_pred             HHHHHHHHHHHH
Q 047130          173 LLIPFLLGAAAL  184 (815)
Q Consensus       173 ~~ip~~~~~~~~  184 (815)
                      +...+.++..++
T Consensus        93 v~~~~~~~~~lg  104 (305)
T PF03601_consen   93 VILTFLLTYWLG  104 (305)
T ss_pred             HHHHHHHHHHHH
Confidence            777776655555

; GO: 0016021 integral to membrane

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=96.48  E-value=1.3  Score=47.81  Aligned_cols=178  Identities=13%  Similarity=0.200  Sum_probs=87.6

Q ss_pred             hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHH
Q 047130          100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLL  179 (815)
Q Consensus       100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~  179 (815)
                      +.-.+++|+.+|-+.-+......+     -+...++.--.+|+++.|+=.=+++|.+++++..|+.-.+ +.+..+-+++
T Consensus        20 v~l~i~~Gi~lG~~~p~~~~~l~~-----~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwii   93 (342)
T COG0798          20 VFLAIAIGILLGVHFPGLAQLLGK-----LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWII   93 (342)
T ss_pred             HHHHHHHHHHHHhcccchhhhccc-----ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHHH
Confidence            444566777777543331111000     0122334445678888888888899999998877664333 2233333333


Q ss_pred             H----HHHHHHHHHhhccCcchHHHH-HHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130          180 G----AAALEKMSRILGIGMEDKMKL-WVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIW  254 (815)
Q Consensus       180 ~----~~~~~~l~~~~~~~~~~~~~~-l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~  254 (815)
                      +    +++++++..    +....... +.+|++=| ||-..+-.     ++.+.+. ..++..-.+||++.+++++....
T Consensus        94 ~P~lm~~la~~fl~----~~pey~~GlILlglApC-~aMVivw~-----~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~  162 (342)
T COG0798          94 GPLLMFALAWFFLP----DEPEYRAGLILLGLAPC-IAMVIVWS-----GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGK  162 (342)
T ss_pred             HHHHHHHHHHHHhC----CCHHHHHHHHHHHhhhh-HHHHHHHH-----hhccCcH-hhhhHHHHHHHHHHHHHHHHHHH
Confidence            2    333333332    11112222 22222222 22222222     3333333 45666677899999998865443


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047130          255 IASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQT  295 (815)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~  295 (815)
                      ..-+. .+....++.++..+...+.+-++.+.+.+++..|.
T Consensus       163 ~~l~v-~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~  202 (342)
T COG0798         163 FFLGV-ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK  202 (342)
T ss_pred             HHHhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32111 12233455666555444444455555555555554

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=96.47  E-value=0.49  Score=51.42  Aligned_cols=91  Identities=16%  Similarity=0.216  Sum_probs=59.0

Q ss_pred             hhhhhH-HHhhHHHHHHhhccc-CChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHH-HHHHHHhhh
Q 047130          351 KLDPMV-SGLFIPLVVTSASMR-TNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAF-ALALIMSTK  427 (815)
Q Consensus       351 kl~~~~-~~l~lPlFF~~~G~~-~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~-~lgl~m~~k  427 (815)
                      ++..|. ..+.-|+.+ -+|.. +|+..+.+..+|   .-+++.+..+++-..+.++.+|+.++-+-|+. .-|+.|+.+
T Consensus       319 ~l~~F~sk~~t~~Lm~-giGv~ytdl~ev~~alt~---~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~  394 (438)
T COG3493         319 QLSQFFSKNLTWPLMA-GIGVAYTDLNEVAAALTW---QNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANM  394 (438)
T ss_pred             HHHHHHHHhhHHHHHH-hhhhccccHHHHHHHhch---hHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCC
Confidence            444333 344455544 45665 898888776666   34455555567788899999999997655554 455999888


Q ss_pred             h-hHHHHHHhhcccccccc
Q 047130          428 G-IVEISTYNISRNIESLT  445 (815)
Q Consensus       428 G-~v~li~~~~~~~~~~i~  445 (815)
                      | .-|+.+++.+-..++++
T Consensus       395 GGtGDvaVLsAa~RM~Lmp  413 (438)
T COG3493         395 GGTGDVAVLSAADRMELMP  413 (438)
T ss_pred             CCCCchHHhhhcchhcccc
Confidence            5 45667776666666554

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=96.15  E-value=0.062  Score=51.21  Aligned_cols=131  Identities=24%  Similarity=0.232  Sum_probs=81.6

Q ss_pred             cceEEEEec-CCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc------c-------chhhhhHHHHHHHhcccCC
Q 047130          665 SFRVAMIFL-GGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS------T-------NWEKVLDSEVLKEVKPENN  730 (815)
Q Consensus       665 ~~~I~~~f~-gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~------~-------~~~~~~d~~~l~~~~~~~~  730 (815)
                      .+++++.++ |.+..++|++.+...++..+..++++++..+......      .       ...+...++.+++.+....
T Consensus         5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (154)
T COG0589           5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE   84 (154)
T ss_pred             cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            568999999 9999999999999999999999998888754221100      0       0012222344544443222


Q ss_pred             CCCCEEEEEEEecC--c--HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEE
Q 047130          731 FNQRVKYVVEMVNE--G--QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVL  806 (815)
Q Consensus       731 ~~~~v~y~e~~V~~--g--~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvL  806 (815)
                      ..+... .+..+..  +  +++....++.  +.||+++|.+++      .++.+    --||-.-+-++..   +..+||
T Consensus        85 ~~~~~~-~~~~~~~g~~~~~~i~~~a~~~--~adliV~G~~g~------~~l~~----~llGsvs~~v~~~---~~~pVl  148 (154)
T COG0589          85 AAGVPV-VETEVVEGSPSAEEILELAEEE--DADLIVVGSRGR------SGLSR----LLLGSVAEKVLRH---APCPVL  148 (154)
T ss_pred             HcCCCe-eEEEEecCCCcHHHHHHHHHHh--CCCEEEECCCCC------ccccc----eeeehhHHHHHhc---CCCCEE
Confidence            211111 1222222  2  4444455554  469999999865      44433    3577777778877   788999


Q ss_pred             EEeee
Q 047130          807 VVQQQ  811 (815)
Q Consensus       807 vvqq~  811 (815)
                      ||...
T Consensus       149 vv~~~  153 (154)
T COG0589         149 VVRSE  153 (154)
T ss_pred             EEccC
Confidence            98753

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=96.03  E-value=0.18  Score=53.85  Aligned_cols=129  Identities=15%  Similarity=0.158  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchh-HHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHH
Q 047130          312 LALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGS-ALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAV  390 (815)
Q Consensus       312 ~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~-~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~  390 (815)
                      .....+.+++.++++..+|-.++|+++.... ++. .-.+.++.+ ..+-+.++....|+++|++.+.....    ....
T Consensus         3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~~~----~~~~   76 (273)
T TIGR00932         3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKLRK----AAFG   76 (273)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHH----HHHH
Confidence            4456678889999999999999999997531 110 111234444 45666677778899999998875522    2223


Q ss_pred             HHHHHHHHH-HHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhH
Q 047130          391 IVAVVVLAK-VATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQM  448 (815)
Q Consensus       391 i~~~~~~~K-~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~  448 (815)
                      +....++.- ++..+...++++.++.+++.+|..+++-.  .-+.+.+..|.+..+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~  133 (273)
T TIGR00932        77 VGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPF  133 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChH
Confidence            333333333 34444556778999999999999877553  223444445555544333

>TIGR00841 bass bile acid transporter

Probab=95.86  E-value=2.4  Score=45.68  Aligned_cols=101  Identities=15%  Similarity=0.144  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhhcccChhHHHhcchh--hHHHHHH-HH-HHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHH-hhcc
Q 047130          138 ATFGYILFQFLTGVKMDVSMIQKTGKK--SLFTGLL-TL-LIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVH-SLSR  212 (815)
Q Consensus       138 a~lgli~~lF~~Gle~d~~~l~~~~k~--~~~i~~~-~~-~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~l-s~Ts  212 (815)
                      .-..+.+.||..|+.++.+++++..|+  ...++.. .+ +.|.+. +.++.+++.    +     .....|..+ +.+.
T Consensus        10 ~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l----~-----~~~~~glvL~~~~P   79 (286)
T TIGR00841        10 LLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKL----P-----PELAVGVLIVGCCP   79 (286)
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCC----C-----HHHHHHHHheeeCC
Confidence            334488899999999999999887763  3333333 33 445443 444443321    1     122233332 2222


Q ss_pred             HHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHH
Q 047130          213 FPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRS  251 (815)
Q Consensus       213 ~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v  251 (815)
                      .++.+.++.++-  +.+ ..++.+...++-+.+.+.+-+
T Consensus        80 ~~~~s~v~t~~~--~gn-~~la~~~~~~stlls~vt~Pl  115 (286)
T TIGR00841        80 GGTASNVFTYLL--KGD-MALSISMTTCSTLLALGMMPL  115 (286)
T ss_pred             CchHHHHHHHHh--CCC-HhhhhHHHHHHHHHHHHHHHH
Confidence            233334444432  222 345555556666666655533

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PRK10490 sensor protein KdpD; Provisional

Probab=95.73  E-value=0.059  Score=67.46  Aligned_cols=125  Identities=7%  Similarity=-0.011  Sum_probs=87.0

Q ss_pred             CccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHH
Q 047130          492 SGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEE  571 (815)
Q Consensus       492 ~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  571 (815)
                      ...-|||||++.++++..+++-+..++  .+.++..+++|+..-..+.              ......+++.+.++ +++
T Consensus       248 ~~~eriLV~v~~~~~~~~lIr~~~rlA--~~~~a~~~~l~V~~~~~~~--------------~~~~~~~~l~~~~~-lA~  310 (895)
T PRK10490        248 HTRDAILLCIGHNTGSEKLVRTAARLA--ARLGSVWHAVYVETPRLHR--------------LPEKKRRAILSALR-LAQ  310 (895)
T ss_pred             CcCCeEEEEECCCcchHHHHHHHHHHH--HhcCCCEEEEEEecCCcCc--------------CCHHHHHHHHHHHH-HHH
Confidence            356789999999999999999999999  4478899999986421110              01112244555554 555


Q ss_pred             hcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCC-CceEEEe
Q 047130          572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAP-CSVGILI  647 (815)
Q Consensus       572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~Ap-CsVgIlv  647 (815)
                      +.++  ++...    ...++.+.|.++|++++++.||||-.++.++  ..      .+++.+++++.+| -+|-|+-
T Consensus       311 ~lGa--~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~------~~s~~~~l~r~~~~idi~iv~  373 (895)
T PRK10490        311 ELGA--ETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WR------RESFADRLARLGPDLDLVIVA  373 (895)
T ss_pred             HcCC--EEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--cc------CCCHHHHHHHhCCCCCEEEEe
Confidence            5332  23222    2358999999999999999999998776543  11      2367789999996 6777764

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=95.67  E-value=3.7  Score=44.88  Aligned_cols=150  Identities=15%  Similarity=0.195  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHhhcccChhHHHhcchhhHHH---HHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhc
Q 047130          135 DLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFT---GLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLS  211 (815)
Q Consensus       135 ~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i---~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~T  211 (815)
                      +....+++..++|..|+.++.+++++..++.-..   -...+++.=++++++...+....+       ..+..|......
T Consensus        30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~-------~~l~~Gl~~~~~  102 (313)
T PF13593_consen   30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLP-------PELALGLLILAC  102 (313)
T ss_pred             hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------HHHHHHHHHHhh
Confidence            4667788888889999999999998765544222   222222222234444444432111       123333333222


Q ss_pred             cHHHHH-H-HHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 047130          212 RFPSIA-C-LVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIAS-IYHA--PLHSAYRNLGIMVVYLLAVVFVVRP  286 (815)
Q Consensus       212 s~~vv~-~-iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~-~~~~--~~~~~~~~~~~~i~~~~~~~~v~r~  286 (815)
                      -++.+. . .++..  .+.+. ..++..+.++.++++++.-+...+.. +++.  +....+..++..++.=.+++-+.|+
T Consensus       103 lPtTv~S~v~~T~~--AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~  179 (313)
T PF13593_consen  103 LPTTVSSSVVLTRL--AGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRR  179 (313)
T ss_pred             CCchhhHHHHHHHH--cCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222111 1 12221  22222 46677788888888877744333322 2211  2223333444443333444555565


Q ss_pred             HHHHHHHH
Q 047130          287 AMLWVVKQ  294 (815)
Q Consensus       287 ~~~~l~~r  294 (815)
                      ...+..+|
T Consensus       180 ~~~~~~~~  187 (313)
T PF13593_consen  180 WVPKWVAR  187 (313)
T ss_pred             HHHHHHHH
Confidence            55444333

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=95.67  E-value=4.3  Score=44.48  Aligned_cols=157  Identities=11%  Similarity=0.125  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCch--hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchh
Q 047130          306 IHNIIMLALGAGYISDLFGQH--VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDN  383 (815)
Q Consensus       306 ~~~~l~~~l~~~~i~e~~G~~--~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~  383 (815)
                      ....+..+.+.+++.+.+++.  .++||++.+.++.......-.+-+.+.    .+..-+.=..+|.+++...+.....+
T Consensus       157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~~~~~  232 (318)
T PF05145_consen  157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRELRRL  232 (318)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHHHHHH
Confidence            344555666777888888774  588888888777654211111112222    22222344567999998777655433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHH
Q 047130          384 LAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIII  463 (815)
Q Consensus       384 ~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~  463 (815)
                      .. ..++..++.+..-.+.+++..+++++|+.+++.   .+.|-|.-|+.+.....+...---..+.++=  .+....+.
T Consensus       233 ~~-~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~~R--l~~v~~~~  306 (318)
T PF05145_consen  233 LP-PALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQVVR--LLFVLLLA  306 (318)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHHHH--HHHHHHHH
Confidence            22 344455555666788888899999999988754   3689999998876665554321111222221  12223446


Q ss_pred             HHHHHhhhc
Q 047130          464 PILVKFLYD  472 (815)
Q Consensus       464 ~~lv~~ly~  472 (815)
                      |++.+++.|
T Consensus       307 p~~~r~~~r  315 (318)
T PF05145_consen  307 PFIARWLRR  315 (318)
T ss_pred             HHHHHHHHH
Confidence            788887664

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00832 acr3 arsenical-resistance protein

Probab=95.65  E-value=4.5  Score=44.55  Aligned_cols=100  Identities=15%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhhcccChhHHHhcchhhHHHH---HHHHH-HHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHH
Q 047130          139 TFGYILFQFLTGVKMDVSMIQKTGKKSLFTG---LLTLL-IPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFP  214 (815)
Q Consensus       139 ~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~---~~~~~-ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~  214 (815)
                      .+++.++||-.|++++++++++..|+...+.   +.+++ .|+ +++.++..+...        ...+.+|..+-...+.
T Consensus        46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~--------~p~l~~GliLv~~~Pg  116 (328)
T TIGR00832        46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRD--------LFEYIAGLILLGLARC  116 (328)
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCC--------CHHHHHHHHHHHhcch
Confidence            3466689999999999999988766644332   22222 333 344444433221        1124455544332222


Q ss_pred             -HHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHH
Q 047130          215 -SIACLVSDLRIINSELGRLGLSCALVSEMIGLILTR  250 (815)
Q Consensus       215 -vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~  250 (815)
                       +.+.+++.+  .+.+.. ++++...++.+++.+++-
T Consensus       117 g~~S~v~T~l--AkGnva-lsv~lt~~stLl~~~~~P  150 (328)
T TIGR00832       117 IAMVFVWNQL--AKGDPE-YTLVLVAVNSLFQVFLYA  150 (328)
T ss_pred             HHHHHHHHHH--cCCCHH-HHHHHHHHHHHHHHHHHH
Confidence             233334433  344443 556666777777766653

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.62  E-value=0.32  Score=57.74  Aligned_cols=131  Identities=10%  Similarity=0.067  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC-CchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHH
Q 047130          308 NIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP-PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAK  386 (815)
Q Consensus       308 ~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~-~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~  386 (815)
                      .++..+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|++.+.....    
T Consensus        13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~~----   86 (558)
T PRK10669         13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVKS----   86 (558)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHhh----
Confidence            34556666778888889999999999999986542 11111 1223333 45556666777899999988754321    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccch
Q 047130          387 STAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTD  446 (815)
Q Consensus       387 ~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~  446 (815)
                      ......+..++.=++..+...+++++++.+++.+|..++.-..  .+++....+.|.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s  144 (558)
T PRK10669         87 IAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS  144 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence            1111112122222333444556778999999999987776333  344455556665544

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.54  E-value=0.43  Score=57.25  Aligned_cols=108  Identities=12%  Similarity=0.111  Sum_probs=64.8

Q ss_pred             HHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchh
Q 047130           85 THACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKK  164 (815)
Q Consensus        85 ~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~  164 (815)
                      .....++...+|++..+|-.++|++++.+-+..           +-...++.+..+-+.+|...+|+++|+..+...+..
T Consensus       228 v~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~-----------~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~  296 (621)
T PRK03562        228 VFGFGLLMEEVGLSMALGAFLAGVLLASSEYRH-----------ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLR  296 (621)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHhcCCccHH-----------HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence            334556778889999999999999988532211           123456666777778888889999999988765443


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhh
Q 047130          165 SLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSL  210 (815)
Q Consensus       165 ~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~  210 (815)
                      .+.+.+..++.=++.+++.+.+++.       ++..++.+|..++.
T Consensus       297 il~~~~~~~~~K~~~~~~~~~~~g~-------~~~~a~~~gl~L~~  335 (621)
T PRK03562        297 ILILLLGFLAIKIAMLWLLARPLGV-------PRKQRRWFAVLLGQ  335 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC-------CHhHHHHHHHHHhc
Confidence            3222222222222222333333221       35667777776664

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.53  E-value=0.36  Score=52.39  Aligned_cols=163  Identities=16%  Similarity=0.132  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHH----HhCchhhHHHHHHHhhcCC-CCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchh
Q 047130          309 IIMLALGAGYISD----LFGQHVYFGPFVFGLAVPA-GPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDN  383 (815)
Q Consensus       309 ~l~~~l~~~~i~e----~~G~~~~lGafvaGl~~~~-~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~  383 (815)
                      .+++..+..++++    ..++++.+=|.+.|+++.| .....+....-++.. ...++.+=.+..|.++++.++.+. ++
T Consensus         6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G~   83 (305)
T PF03601_consen    6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-GW   83 (305)
T ss_pred             HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-Cc
Confidence            3444444444544    3677888889999999998 544445555444433 467888888999999999988765 44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchh---HHHHHHHHHHHH
Q 047130          384 LAKSTAVIVAVVVLAKVATTMIPP-LYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ---MFSFLTVEILVT  459 (815)
Q Consensus       384 ~~~~~~~i~~~~~~~K~i~~~l~~-~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~---~~~~lv~~~ll~  459 (815)
                         ...++.++.+..=+..++..+ +.+|++++.+..++...+.=|.-+++...-..+.+  +++   ..+.+.+.-++.
T Consensus        84 ---~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~va  158 (305)
T PF03601_consen   84 ---KGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVA  158 (305)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHH
Confidence               233333334444444444444 99999999999999988877877766555444443  122   122333334444


Q ss_pred             HHHHHHHHHhhhccccccc
Q 047130          460 AIIIPILVKFLYDPSRKYA  478 (815)
Q Consensus       460 t~i~~~lv~~ly~p~~~~~  478 (815)
                      .++-|.+.+++.-+...+-
T Consensus       159 m~~~P~l~~~l~l~~~~~G  177 (305)
T PF03601_consen  159 MFLYPLLGHALGLSPQQFG  177 (305)
T ss_pred             HHHHHHHHHHhCCCHHHHH
Confidence            5556777776665544443

; GO: 0016021 integral to membrane

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)

Probab=95.48  E-value=0.038  Score=47.83  Aligned_cols=50  Identities=16%  Similarity=0.065  Sum_probs=38.8

Q ss_pred             ChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130          590 LMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG  644 (815)
Q Consensus       590 ~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg  644 (815)
                      .+++.+.+.|++.++|.|++|.|+....+..+.+.     +...++.+.++|||.
T Consensus        35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~-----~~~~~~~~~~~~~vl   84 (86)
T cd01984          35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS-----ANVLVVIKGAGIPVL   84 (86)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch-----hhhhhcccccCCcee
Confidence            78889999999999999999999886655444330     233488999999974

The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.48  E-value=0.49  Score=56.59  Aligned_cols=107  Identities=10%  Similarity=0.062  Sum_probs=64.6

Q ss_pred             HHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhH
Q 047130           87 ACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSL  166 (815)
Q Consensus        87 ~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~  166 (815)
                      ...++.+.+|+..++|-.++|++++.+-+..           +-...++.+..+-+.+|...+|+++|+..+...+...+
T Consensus       227 ~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~-----------~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il  295 (601)
T PRK03659        227 GSALFMDALGLSMALGTFIAGVLLAESEYRH-----------ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVL  295 (601)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHhcCCchHH-----------HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHH
Confidence            4456678889999999999999998642111           12345666777888888899999999998877654333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhc
Q 047130          167 FTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLS  211 (815)
Q Consensus       167 ~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~T  211 (815)
                      .+.+..+++=++.+++.+.+++       .++..++.+|..++.-
T Consensus       296 ~~~~~~l~~K~~~~~~~~~~~g-------~~~~~al~~g~~L~~~  333 (601)
T PRK03659        296 ISVVVLVAVKGLVLYLLARLYG-------LRSSERMQFAGVLSQG  333 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcc
Confidence            2222222222222222222222       1355666666665543

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=95.47  E-value=0.29  Score=48.29  Aligned_cols=114  Identities=19%  Similarity=0.326  Sum_probs=76.9

Q ss_pred             hhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH---HHhcchhhHHHH
Q 047130           93 KRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM---IQKTGKKSLFTG  169 (815)
Q Consensus        93 krl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~  169 (815)
                      +++++-...+-+++|+++|-  +++....    +  -.....+.+.++|+.+|++.+|++--++.   +++.+.+...++
T Consensus        19 ~~~~LG~a~G~L~vgL~~G~--~~~~~~~----~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~   90 (169)
T PF06826_consen   19 GGFSLGAAGGVLFVGLILGA--LGRTGPI----F--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG   90 (169)
T ss_pred             cceeccccHHHHHHHHHHHH--hhhccCC----C--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            55666677788899998884  2221110    0  13456678999999999999999988765   566677777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHHHHH
Q 047130          170 LLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACLVSD  222 (815)
Q Consensus       170 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~e  222 (815)
                      +.-.++|.++++.+++++.+.        ......| .+-+.|++|.+....+.
T Consensus        91 ~~i~~~~~~~~~~~~~~~~~l--------~~~~~~G~~aGa~T~tp~L~~A~~~  136 (169)
T PF06826_consen   91 VIITLVPLLIALVIGRYLFKL--------NPGIAAGILAGALTSTPALAAAQEA  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC--------CHHHHHHHHHccccCcHHHHHHHHh
Confidence            877788888777777644331        1223333 34477888888776554

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=95.42  E-value=6.1  Score=44.60  Aligned_cols=92  Identities=15%  Similarity=0.119  Sum_probs=57.3

Q ss_pred             CchhhHHHHHHHhhcCCCCCch--hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHH-H
Q 047130          324 GQHVYFGPFVFGLAVPAGPPLG--SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAK-V  400 (815)
Q Consensus       324 G~~~~lGafvaGl~~~~~~~~~--~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K-~  400 (815)
                      .+....+|++.|+++.+--+..  .++.++.-+...++.+-+|.+..=|.++++.+.+.  +.  .+.++++..++.- +
T Consensus       244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~--a~--Plliil~~q~i~~~l  319 (398)
T TIGR00210       244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL--AG--PIALILLVQVMFMAL  319 (398)
T ss_pred             CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH--HH--HHHHHHHHHHHHHHH
Confidence            3667889999999998742111  12333344445677888888888899999998865  22  2334444433333 3


Q ss_pred             HHHHHhhhhcCCChHHHHHH
Q 047130          401 ATTMIPPLYCKVPKRDAFAL  420 (815)
Q Consensus       401 i~~~l~~~~~~~~~~~~~~l  420 (815)
                      ...++..+..+-+ -|+..+
T Consensus       320 ~~~fv~fr~mg~~-ydaaV~  338 (398)
T TIGR00210       320 YAIFVTFRLMGKD-YDAAVL  338 (398)
T ss_pred             HHHHHhHHhccch-HHHHHH
Confidence            4455666667666 666553

>COG2855 Predicted membrane protein [Function unknown]

Probab=95.37  E-value=0.21  Score=53.99  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=85.9

Q ss_pred             HHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHH
Q 047130          318 YISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVL  397 (815)
Q Consensus       318 ~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~  397 (815)
                      ...+..|.++..=|.+.|+++...++.+.+...-++.. ...++.+=.+..|++++++++.+. ++   ..+.+....+.
T Consensus        30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~---~~v~~~~~~l~  104 (334)
T COG2855          30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GG---SGVLIIAITLS  104 (334)
T ss_pred             HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Cc---cHHHHHHHHHH
Confidence            34455667788899999999997655555555545443 677888888899999999998865 43   34555666666


Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhh
Q 047130          398 AKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNI  437 (815)
Q Consensus       398 ~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~  437 (815)
                      .-++.+++..+++|+|++.+..+|..-+.=|.-++....-
T Consensus       105 ~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~p  144 (334)
T COG2855         105 STFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAP  144 (334)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCC
Confidence            7788888888899999999999998877777776655443

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=95.18  E-value=0.68  Score=52.41  Aligned_cols=138  Identities=12%  Similarity=0.137  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCC-CC---CchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhccc
Q 047130          305 HIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPA-GP---PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL  380 (815)
Q Consensus       305 ~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~-~~---~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~  380 (815)
                      .+..++..+...+.+.+.+|+++++|-.++|+++.+ +.   ...++..+-+.++    =.-++...+|+.+|+..+...
T Consensus        10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~   85 (397)
T COG0475          10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKV   85 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHh
Confidence            345566667777899999999999999999999997 21   1223333334444    333445567999999988765


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHH
Q 047130          381 DDNLAKSTAVIVAVVVLAKVATT--MIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFL  452 (815)
Q Consensus       381 ~~~~~~~~~~i~~~~~~~K~i~~--~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~l  452 (815)
                      ...   .......+.+..=++..  +... .++.++.+++.+|..+..-..-  +.+.+..|.|..+.+.-...
T Consensus        86 ~~~---~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~~--i~~~iL~e~~~~~~~~g~~~  153 (397)
T COG0475          86 GRS---VGLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSSTA--IVLKILMELGLLKTREGQLI  153 (397)
T ss_pred             chh---hhhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHH--HHHHHHHHhccccchHHHHH
Confidence            322   12222222222222222  2222 5899999999999876544221  23344445555444443333

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=94.96  E-value=1.2  Score=44.88  Aligned_cols=105  Identities=13%  Similarity=0.169  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhhcccChhHHHhcchhhHHHH---HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhh-ccHHH
Q 047130          140 FGYILFQFLTGVKMDVSMIQKTGKKSLFTG---LLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSL-SRFPS  215 (815)
Q Consensus       140 lgli~~lF~~Gle~d~~~l~~~~k~~~~i~---~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~-Ts~~v  215 (815)
                      +.+.+.||..|+++|++++++..|+...+.   +.++++.=.+++++++.+...        ......|..+.. +.-+.
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~--------~~~~~~Gl~l~~~~P~~~   73 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL--------SPALALGLLLVAACPGGP   73 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHhcCCcHH
Confidence            457889999999999999998877654432   222333222334444222211        112223332211 11122


Q ss_pred             HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130          216 IACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWI  255 (815)
Q Consensus       216 v~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~  255 (815)
                      .+...+++  .+.+.. ++++...++.+.+.+++-+...+
T Consensus        74 ~s~~~t~l--~~Gd~~-ls~~lt~istll~~~~~P~~~~l  110 (187)
T PF01758_consen   74 ASNVFTYL--AGGDVA-LSVSLTLISTLLAPFLMPLLLYL  110 (187)
T ss_dssp             HHHHHHHH--TT--HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--hCCCcc-cccceeeHHHHHHHHHHHHHHHH
Confidence            33333333  233333 66666777777777666444443

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>PRK03818 putative transporter; Validated

Probab=94.87  E-value=0.52  Score=55.56  Aligned_cols=108  Identities=18%  Similarity=0.317  Sum_probs=68.4

Q ss_pred             hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHH---HhcchhhHHHHHHHHHHH
Q 047130          100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMI---QKTGKKSLFTGLLTLLIP  176 (815)
Q Consensus       100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l---~~~~k~~~~i~~~~~~ip  176 (815)
                      +.|-+++|+++|-.  +.  .+ ..-   -.......+.++|+.+|+|.+|++.-+..+   |+.+.+-..+++.-.+++
T Consensus        33 ~~g~L~~gl~~G~~--~~--~~-~~~---~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~  104 (552)
T PRK03818         33 IGGVLFGGIIVGHF--VS--QF-GLT---LDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILG  104 (552)
T ss_pred             cHHHHHHHHHHhcc--cc--cc-Ccc---cChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            47888888888842  11  11 000   124566779999999999999999998764   555666667777777777


Q ss_pred             HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHh
Q 047130          177 FLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDL  223 (815)
Q Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el  223 (815)
                      .++++++.++++.       + .....=..+-+.|++|.+.......
T Consensus       105 ~~~~~~~~~~~~~-------~-~~~~~G~~aGa~T~tp~l~aa~~~~  143 (552)
T PRK03818        105 GLVTAILHKLFGI-------P-LPVMLGIFSGAVTNTPALGAGQQIL  143 (552)
T ss_pred             HHHHHHHHHHhCC-------C-HHHHHHHhhccccccHHHHHHHHHH
Confidence            7766655443332       1 1122233345778888887766433

>PRK05326 potassium/proton antiporter; Reviewed

Probab=94.83  E-value=0.44  Score=56.57  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchh--HHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHH
Q 047130          308 NIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGS--ALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLA  385 (815)
Q Consensus       308 ~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~--~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~  385 (815)
                      +++++..+++.++..+|++.+++-.++|+++.....-.-  .-.+-.+ ....+.+++.....|+++|+..+...  +. 
T Consensus        13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~-~i~~l~L~~iLF~~Gl~~~~~~l~~~--~~-   88 (562)
T PRK05326         13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAY-LVGNLALAVILFDGGLRTRWSSFRPA--LG-   88 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHH-HHHHHHHHHHHHcCccCCCHHHHHHH--HH-
Confidence            344455556677778888889999999988876421100  1112233 34678888888899999999988754  21 


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHhhhhcCCChHHHHHHHHHHhhhhhH
Q 047130          386 KSTAVIVAVVVLAKV-ATTMIPPLYCKVPKRDAFALALIMSTKGIV  430 (815)
Q Consensus       386 ~~~~~i~~~~~~~K~-i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v  430 (815)
                       ....+....++.-. +.++...+++++++.+++.+|.++++-...
T Consensus        89 -~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a  133 (562)
T PRK05326         89 -PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA  133 (562)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence             23333333333323 334455567799999999999877665443

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=94.63  E-value=0.28  Score=49.38  Aligned_cols=126  Identities=22%  Similarity=0.363  Sum_probs=79.8

Q ss_pred             HHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccCh-----hHHHhcchhhHHHHHHHHHH
Q 047130          101 ASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDV-----SMIQKTGKKSLFTGLLTLLI  175 (815)
Q Consensus       101 v~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~-----~~l~~~~k~~~~i~~~~~~i  175 (815)
                      ++.+++|+++|-....  +           ....+...+..+.+++|.+|+++--     +.+++.+++++.+.+...+-
T Consensus         2 l~~li~Gi~lG~~~~~--~-----------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG   68 (191)
T PF03956_consen    2 LIALILGILLGYFLRP--P-----------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG   68 (191)
T ss_pred             eeeHHHHHHHHHHhcc--c-----------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3456788888743211  1           1122677788999999999998853     45777889999999998888


Q ss_pred             HHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHH
Q 047130          176 PFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTR  250 (815)
Q Consensus       176 p~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~  250 (815)
                      +++.+.+++.++..       +..+++.++.-+.=  +.....+++|++  +-++|.++.=+=++.+++++++.-
T Consensus        69 Sllgg~l~~~ll~~-------~~~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P  132 (191)
T PF03956_consen   69 SLLGGLLASLLLGL-------SLKESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIP  132 (191)
T ss_pred             HHHHHHHHHHHhcC-------CHHHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888777743       34455554443311  111122334432  557777776666666666665543

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=94.12  E-value=7.3  Score=42.80  Aligned_cols=119  Identities=14%  Similarity=0.089  Sum_probs=80.0

Q ss_pred             CchhhHHHHHHHhhcCCCCCchhHHHHhhhhh---HHHhhHHHHHHhhccc-CChhhhcccchhHHHHHHHHHHHHHHHH
Q 047130          324 GQHVYFGPFVFGLAVPAGPPLGSALVEKLDPM---VSGLFIPLVVTSASMR-TNLSDIKLLDDNLAKSTAVIVAVVVLAK  399 (815)
Q Consensus       324 G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~---~~~l~lPlFF~~~G~~-~dl~~l~~~~~~~~~~~~~i~~~~~~~K  399 (815)
                      ++|+..-..++|.++....-..++++++...+   ...-+.+..++-+|+. +|++.+.+..++   ..+++++..+++=
T Consensus       203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~---~~vviiv~~Vlg~  279 (347)
T TIGR00783       203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW---QFVVICLSVVVAM  279 (347)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch---hHhhhHHHHHHHH
Confidence            67888888889988887655566666665544   2333344444445766 788887765444   3556666677788


Q ss_pred             HHHHHHhhhhcCCChHHH-HHHHHHHhhh-hhHHHHHHhhcccccccc
Q 047130          400 VATTMIPPLYCKVPKRDA-FALALIMSTK-GIVEISTYNISRNIESLT  445 (815)
Q Consensus       400 ~i~~~l~~~~~~~~~~~~-~~lgl~m~~k-G~v~li~~~~~~~~~~i~  445 (815)
                      .+++++.+++.|+-+-|+ +.-|+.|+.+ |.-|+.+.+.+...+++.
T Consensus       280 ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp  327 (347)
T TIGR00783       280 ILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP  327 (347)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence            889999999999655555 5557788777 455677776666666553

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=94.00  E-value=1.6  Score=47.87  Aligned_cols=155  Identities=10%  Similarity=0.127  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHH-----hCchhhHHHHHHHhhcCCCC--CchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc
Q 047130          309 IIMLALGAGYISDL-----FGQHVYFGPFVFGLAVPAGP--PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD  381 (815)
Q Consensus       309 ~l~~~l~~~~i~e~-----~G~~~~lGafvaGl~~~~~~--~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~  381 (815)
                      .+.+++.+.++++.     .++++.+=|.+.|+++.|..  +..+....-+ .+....++-+=.+..|.++++.++... 
T Consensus        10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi-~f~~k~lLr~gIVLlG~~l~~~~i~~~-   87 (335)
T TIGR00698        10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGV-LFAKPFLLRIGITLYGFRLTFPYIADV-   87 (335)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchH-HHHHHHHHHHHHHHHCccccHHHHHHh-
Confidence            33444444455443     47788888999999998842  1222222222 234556677777888999999988754 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-HHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhH---HHHHHHHHH
Q 047130          382 DNLAKSTAVIVAVVVLAKVAT-TMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQM---FSFLTVEIL  457 (815)
Q Consensus       382 ~~~~~~~~~i~~~~~~~K~i~-~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~---~~~lv~~~l  457 (815)
                      ++   ..+.+.++.+..-+.. .++..+.+|++++.+..++...+.=|.-+++...-..+.+  +++.   .+.+++.-.
T Consensus        88 G~---~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt  162 (335)
T TIGR00698        88 GP---NEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGT  162 (335)
T ss_pred             hH---HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHH
Confidence            43   2334334334444444 4455589999999999999988877877766554433332  1221   222333333


Q ss_pred             HHHHHHHHHHHhh
Q 047130          458 VTAIIIPILVKFL  470 (815)
Q Consensus       458 l~t~i~~~lv~~l  470 (815)
                      +..++-|++.+++
T Consensus       163 ~am~l~P~l~~~l  175 (335)
T TIGR00698       163 TGIFLYPSIYHYA  175 (335)
T ss_pred             HHHHHHHHHHHHH
Confidence            4445556666544

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>TIGR00930 2a30 K-Cl cotransporter

Probab=93.34  E-value=30  Score=43.82  Aligned_cols=133  Identities=14%  Similarity=0.064  Sum_probs=78.5

Q ss_pred             CCCccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHH
Q 047130          490 KASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLF  569 (815)
Q Consensus       490 ~~~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  569 (815)
                      ..+..-++|+.+.+|+..+.+++++..+.+.  .+ -..+.|+++-+..       ..        ..+.++..++.+.+
T Consensus       571 ~knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~--~g-l~i~~~v~~~~~~-------~~--------~~~~~~~~~~~~~~  632 (953)
T TIGR00930       571 VKNWRPQCLVLTGPPVCRPALLDFASQFTKG--KG-LMICGSVIQGPRL-------EC--------VKEAQAAEAKIQTW  632 (953)
T ss_pred             ccccCCeEEEEeCCCcCcHHHHHHHHHhccC--Cc-EEEEEEEecCchh-------hh--------HHHHHHHHHHHHHH
Confidence            3566789999999999999999999999832  33 4456688773211       00        00112223333333


Q ss_pred             HHhcCcceEEEEEEEecCCCChhHHHHHHHHhc-----CCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130          570 EEKNWGTACVYPFTAISPPKLMHEDVCMLALDK-----LASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG  644 (815)
Q Consensus       570 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~-----~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg  644 (815)
                      -++  .+  ++.|..+-.-.+..+++..+.+--     +.+.++|||...|..++..  +-.++-++-+.. -.+...|.
T Consensus       633 ~~~--~~--~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~--~~~~y~~~i~~a-~~~~~~v~  705 (953)
T TIGR00930       633 LEK--NK--VKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR--AWETYIGIIHDA-FDAHLAVV  705 (953)
T ss_pred             HHH--hC--CCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch--hHHHHHHHHHHH-HHcCCcEE
Confidence            332  12  222332223358999999988775     6899999999887654311  112233333333 24556666


Q ss_pred             EEe
Q 047130          645 ILI  647 (815)
Q Consensus       645 Ilv  647 (815)
                      |+.
T Consensus       706 i~r  708 (953)
T TIGR00930       706 VVR  708 (953)
T ss_pred             EEc
Confidence            664

>PRK10490 sensor protein KdpD; Provisional

Probab=93.25  E-value=0.2  Score=62.84  Aligned_cols=98  Identities=9%  Similarity=0.065  Sum_probs=65.7

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecC
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNE  744 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~  744 (815)
                      ..+|+|...|+|..+..+..|.|||+..++.++++||.+++....+.+.++.+. +.++ +..+.. .+.+......|  
T Consensus       250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~-~~~~-lA~~lG-a~~~~~~~~dv--  324 (895)
T PRK10490        250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAIL-SALR-LAQELG-AETATLSDPAE--  324 (895)
T ss_pred             CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHH-HHHH-HHHHcC-CEEEEEeCCCH--
Confidence            468999999999999999999999999999999999987633222222233333 2222 322222 22222222223  


Q ss_pred             cHHHHHHHHhhCCCccEEEEcccCC
Q 047130          745 GQETLAKIQSVVPKYDLVIVGRRDN  769 (815)
Q Consensus       745 g~~~~~~i~~~~~~~DLiivG~~~~  769 (815)
                      .+++++++++.+.  +.||||++++
T Consensus       325 a~~i~~~A~~~~v--t~IViG~s~~  347 (895)
T PRK10490        325 EKAVLRYAREHNL--GKIIIGRRAS  347 (895)
T ss_pred             HHHHHHHHHHhCC--CEEEECCCCC
Confidence            2447888888777  9999999977

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=92.83  E-value=3.1  Score=40.47  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHhCch--hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130          310 IMLALGAGYISDLFGQH--VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS  387 (815)
Q Consensus       310 l~~~l~~~~i~e~~G~~--~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~  387 (815)
                      +..+...+++.+.+|+.  .++||++++.++.-.....-++-+.+.    .+-.-+.=..+|.+++...+.+...+.. .
T Consensus         4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~~~~~~~-~   78 (156)
T TIGR03082         4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAELKRLWP-A   78 (156)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHHHHHHHH-H
Confidence            44555666777888886  788999988887754211111222222    2233344567899999877765544432 3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcc
Q 047130          388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISR  439 (815)
Q Consensus       388 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~  439 (815)
                      .....+..+..-++.+++..++.++++.+++. +  ..|-|.-++.......
T Consensus        79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L-a--~~PGGl~~m~~~A~~~  127 (156)
T TIGR03082        79 ALLSTVLLLALSALLAWLLARLTGVDPLTAFL-A--TSPGGASEMAALAAEL  127 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCchHHHHHHHHHHh
Confidence            44555555666788888899999999998853 3  5789988887765433

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=92.62  E-value=3  Score=51.80  Aligned_cols=43  Identities=7%  Similarity=0.037  Sum_probs=34.7

Q ss_pred             CCccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeec
Q 047130          491 ASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDL  535 (815)
Q Consensus       491 ~~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel  535 (815)
                      ++...||.++.-.-.+=..++.++..++.  .....+.++|.+.-
T Consensus       627 ~~~~~~v~~~F~GG~DDREALa~a~rma~--~p~v~lTVirf~~~  669 (832)
T PLN03159        627 NQVSHHVAVLFFGGPDDREALAYAWRMSE--HPGITLTVMRFIPG  669 (832)
T ss_pred             cccceeEEEEecCCcchHHHHHHHHHHhc--CCCeEEEEEEEEcc
Confidence            34566999999777788889999999984  35789999999864

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=92.35  E-value=0.32  Score=57.55  Aligned_cols=115  Identities=11%  Similarity=0.203  Sum_probs=75.7

Q ss_pred             hhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH---HHhcchhhHHHHH
Q 047130           94 RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM---IQKTGKKSLFTGL  170 (815)
Q Consensus        94 rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~~  170 (815)
                      ++.+-...+-+++|+++|-  ++..... .+-.|   ......+.++|+.+|++.+|+.--+..   +++.+.+...+|+
T Consensus       412 p~~lg~~~g~l~~gl~~g~--~~~~~~~-~~~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~  485 (562)
T TIGR03802       412 PLTLGTGGGALISGLVFGW--LRSKHPT-FGNIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI  485 (562)
T ss_pred             ceeehhhHHHHHHHHHHHH--hcccCCc-ceecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence            4445566788899999885  3321110 00122   445677999999999999999988765   5666677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHHHHH
Q 047130          171 LTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACLVSD  222 (815)
Q Consensus       171 ~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~e  222 (815)
                      +-.++|.++++.+++++.+.        ......| .+-+.|++|.+......
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~t~~l~~a~~~  530 (562)
T TIGR03802       486 VVTILPLIITMLIGKYVLKY--------DPALLLGALAGARTATPALGAVLER  530 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhCC--------CHHHHHHHhhccCCCcHHHHHHHHh
Confidence            77778877777777544331        1223444 45688999988776544

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=92.33  E-value=2.6  Score=51.14  Aligned_cols=71  Identities=10%  Similarity=0.039  Sum_probs=48.9

Q ss_pred             HHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCChHHHHHHHHHHhhhhhH
Q 047130          356 VSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLY--CKVPKRDAFALALIMSTKGIV  430 (815)
Q Consensus       356 ~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~--~~~~~~~~~~lgl~m~~kG~v  430 (815)
                      +..+.+++-.+..|++++...+...  |.  .+..+++.++..-++.+.+.+++  .+++|..++.+|.++++-.-+
T Consensus        74 IteIvL~I~LFa~Gl~L~~~~Lrr~--wr--sV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV  146 (810)
T TIGR00844        74 ISRILLCLQVFAVSVELPRKYMLKH--WV--SVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV  146 (810)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHh--HH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence            3566777777788999999988765  32  23344444444445555555543  499999999999999987654

This model is specific for the fungal members of this family.

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

Probab=92.33  E-value=0.61  Score=55.71  Aligned_cols=126  Identities=14%  Similarity=0.093  Sum_probs=83.5

Q ss_pred             CccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHH
Q 047130          492 SGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEE  571 (815)
Q Consensus       492 ~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  571 (815)
                      ...-|||||++.+.....+++-+..++  .+..+..+++|+..-.....+              ....+++...++ .++
T Consensus       246 ~~~e~ilvcI~~~~~~e~liR~a~RlA--~~~~a~~~av~v~~~~~~~~~--------------~~~~~~l~~~~~-Lae  308 (890)
T COG2205         246 AARERILVCISGSPGSEKLIRRAARLA--SRLHAKWTAVYVETPELHRLS--------------EKEARRLHENLR-LAE  308 (890)
T ss_pred             cccceEEEEECCCCchHHHHHHHHHHH--HHhCCCeEEEEEecccccccc--------------HHHHHHHHHHHH-HHH
Confidence            455799999999999999999999999  446788899998542111000              011233333333 444


Q ss_pred             hcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCC-CceEEE
Q 047130          572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAP-CSVGIL  646 (815)
Q Consensus       572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~Ap-CsVgIl  646 (815)
                      +..+  .+  .+..+  .+..+.|.++|.++++.-||+|-+.++++...+      .+++.+++++.+| .+|-|+
T Consensus       309 ~lGa--e~--~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~idv~ii  372 (890)
T COG2205         309 ELGA--EI--VTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPGIDVHIV  372 (890)
T ss_pred             HhCC--eE--EEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCCceEEEe
Confidence            3222  22  22333  599999999999999999999988775543333      2567779888885 344443

>COG2855 Predicted membrane protein [Function unknown]

Probab=91.50  E-value=24  Score=38.45  Aligned_cols=102  Identities=18%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             HHhhhCCChhHHHHHhhhhcccccccccc-cccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHH
Q 047130           91 VLKRFGIPMIASQITGGLILGQAIPGLNR-YYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTG  169 (815)
Q Consensus        91 llkrl~~P~iv~~IlaGillGP~~lg~~~-~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~  169 (815)
                      .....++|..+--|+.||++|..  ...+ ...     ..-.-.-+.+=++|.+    +.|.++++..+...|.+.+.+-
T Consensus        31 ~~~~~~l~al~lAIllGi~l~~l--~~~~~~~~-----~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~   99 (334)
T COG2855          31 FSIHLGLSALTLAILLGILLGIL--PQIPAQTS-----AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLII   99 (334)
T ss_pred             HhhhcCchHHHHHHHHHHHHhcc--ccchhhhc-----cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHH
Confidence            34557799999999999999932  2222 111     0112233455567777    6799999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhh
Q 047130          170 LLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSL  210 (815)
Q Consensus       170 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~  210 (815)
                      ......++++++.++.+++.       ++..++++|.--|+
T Consensus       100 ~~~l~~t~~~~~~lg~~lgl-------d~~~a~Lia~GssI  133 (334)
T COG2855         100 AITLSSTFLFAYFLGKLLGL-------DKKLALLIAAGSSI  133 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHccchh
Confidence            87777777776666664443       35666666654444

>PRK04972 putative transporter; Provisional

Probab=91.42  E-value=0.97  Score=53.39  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=67.8

Q ss_pred             hhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHH---HhcchhhHHHH
Q 047130           93 KRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMI---QKTGKKSLFTG  169 (815)
Q Consensus        93 krl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l---~~~~k~~~~i~  169 (815)
                      +++++-...|-+++|+++|-.  |.-       .|       ..+.++|+.+|+|.+|++.-+..+   |+.+.+...++
T Consensus        33 ~~~~LG~~~g~L~vgl~~g~~--~~~-------~~-------~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~   96 (558)
T PRK04972         33 GSIQLGNSIGVLVVSLLLGQQ--HFS-------IN-------TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLA   96 (558)
T ss_pred             eeEecCcchHHHHHHHHHHhC--CCC-------CC-------hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHH
Confidence            446677777999999999953  310       11       234589999999999999998764   55566666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHHHH
Q 047130          170 LLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACLVS  221 (815)
Q Consensus       170 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~  221 (815)
                      +...+++.+++..++++++.         ......| .+-+.|++|.+.....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~G~~aGa~T~tp~l~~a~~  140 (558)
T PRK04972         97 LVMVGSALVIALGLGKLFGW---------DIGLTAGMLAGSMTSTPVLVGAGD  140 (558)
T ss_pred             HHHHHHHHHHHHHHHHHhCC---------CHHHHHHHhhccccCcHHHHHHHH
Confidence            66666666666655544332         1122233 3446788888776654

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=91.36  E-value=1.1  Score=53.00  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHhh-----hCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccC
Q 047130           80 VAFAVTHACHFVLKR-----FGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMD  154 (815)
Q Consensus        80 lil~~~~~~~~llkr-----l~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d  154 (815)
                      +.++++..+++++-|     +++-.+.+-+++|+++|..... +               -+.+.++|+++|+|.+|++.-
T Consensus        13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i---------------~~~v~~~gl~lFvy~vG~~~G   76 (562)
T TIGR03802        13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-I---------------DPGVKAVFFALFIFAIGYEVG   76 (562)
T ss_pred             HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-C---------------ChHHHHHHHHHHHHHhhhccC
Confidence            334444445555544     5567788999999999963221 1               123678999999999999999


Q ss_pred             hhHHHhcchhhHHHHHHHHH
Q 047130          155 VSMIQKTGKKSLFTGLLTLL  174 (815)
Q Consensus       155 ~~~l~~~~k~~~~i~~~~~~  174 (815)
                      +..++.-.|+.+...+.+++
T Consensus        77 p~Ff~~l~~~g~~~~~~a~~   96 (562)
T TIGR03802        77 PQFFASLKKDGLREIILALV   96 (562)
T ss_pred             HHHHHHHHhccHHHHHHHHH
Confidence            98876555444444444333

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=91.02  E-value=1.9  Score=41.87  Aligned_cols=114  Identities=20%  Similarity=0.287  Sum_probs=66.6

Q ss_pred             CCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHH---hcc-hhhHHHHHH
Q 047130           96 GIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQ---KTG-KKSLFTGLL  171 (815)
Q Consensus        96 ~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~---~~~-k~~~~i~~~  171 (815)
                      ++-...+-+++|+++|-  ++...... +-.   .......+.++|+.+|++.+|++--++.+.   +.+ -..+.++..
T Consensus        20 ~LG~~~G~L~vgL~~G~--~~~~~p~~-~~~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~   93 (154)
T TIGR01625        20 KLGNAGGVLFVGLLLGH--FGATGPLT-WYI---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGAL   93 (154)
T ss_pred             EecccHHHHHHHHHHHh--ccccCCcc-eec---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence            33446788999999885  33321110 011   134677889999999999999999887654   433 123344444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHHHHHh
Q 047130          172 TLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACLVSDL  223 (815)
Q Consensus       172 ~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~el  223 (815)
                      -.++|.+++..+...+.+ +       ......| .+-+.|++|.+....+..
T Consensus        94 v~~~~~~~~~~~~~~~~~-~-------~~~~~~G~~aGa~T~tpaL~aa~~~~  138 (154)
T TIGR01625        94 ITVVPTLLVAVALIKLLR-I-------NYALTAGMLAGATTNTPALDAANDTL  138 (154)
T ss_pred             HHHHHHHHHHHHHHHHhC-C-------CHHHHHHHHhccccChHHHHHHHHHh
Confidence            445555555444443332 1       1223333 445789999887766543

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=90.93  E-value=2.9  Score=46.81  Aligned_cols=117  Identities=8%  Similarity=0.032  Sum_probs=65.0

Q ss_pred             HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH-HHHhhhhh-HHHHH
Q 047130          357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALA-LIMSTKGI-VEIST  434 (815)
Q Consensus       357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lg-l~m~~kG~-v~li~  434 (815)
                      .+.++-.||..+|+..++..+........ ....+.....+...+.....+..++.++.-.+..| ..|. .|+ .+.++
T Consensus        66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~-~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~-GGhGTAaa~  143 (368)
T PF03616_consen   66 QDFLMIIFFTTIGLGASLKLLKKGGKAVL-IFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFT-GGHGTAAAF  143 (368)
T ss_pred             HHHHHHHHHHHHhhccchhhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhcccccc-CCccHHHHH
Confidence            56778899999999999887765422110 12222222334555555556667788876665543 2222 222 22334


Q ss_pred             Hhhcccc-cccchhHH--HHHHHHHHHHHHHHHHHHHhhhcccc
Q 047130          435 YNISRNI-ESLTDQMF--SFLTVEILVTAIIIPILVKFLYDPSR  475 (815)
Q Consensus       435 ~~~~~~~-~~i~~~~~--~~lv~~~ll~t~i~~~lv~~ly~p~~  475 (815)
                      .....+. |.-+....  +...+-.+...+++.|+.+++.|+.+
T Consensus       144 g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~  187 (368)
T PF03616_consen  144 GPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK  187 (368)
T ss_pred             HHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4444454 54333332  23334445556788999999886533

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=90.67  E-value=2.9  Score=49.19  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchh-HHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130          309 IIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGS-ALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS  387 (815)
Q Consensus       309 ~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~-~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~  387 (815)
                      .++.+.+...+++.+++++.++-+++|+++...+.... .+..   +....+++|......|+++|...+.....    .
T Consensus         6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~----~   78 (525)
T TIGR00831         6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELRENFR----P   78 (525)
T ss_pred             HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHH----H
Confidence            33444455566777777777777777777764311110 0111   12235788888888999999998876521    2


Q ss_pred             HHHHHHHHHHH-HHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHH
Q 047130          388 TAVIVAVVVLA-KVATTMIPPLYCKVPKRDAFALALIMSTKGIVEI  432 (815)
Q Consensus       388 ~~~i~~~~~~~-K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l  432 (815)
                      +..+.+...+. -.+.++...+..++|+..++.+|.++++-..+..
T Consensus        79 i~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav  124 (525)
T TIGR00831        79 IALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV  124 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence            33333333322 2233333334678999999999999988876653

This model is specific for the bacterial members of this family.

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=90.53  E-value=3  Score=45.46  Aligned_cols=123  Identities=13%  Similarity=0.090  Sum_probs=74.6

Q ss_pred             hHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHH
Q 047130          355 MVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVI-VAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEIS  433 (815)
Q Consensus       355 ~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i-~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li  433 (815)
                      +.++++=|+.|.-+|..+|++-+... ++    ..++ -..+=++- ..+++.+.+.+++.+|+..+|.+=..-|-.++.
T Consensus       102 i~~gl~P~LIFlGIGAMtDFgpllan-P~----~~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf  175 (399)
T TIGR03136       102 FSNSLVACILFFGIGAMSDISFILAR-PW----ASITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLF  175 (399)
T ss_pred             HhcccHHHHHHHhccHHhcchHHHhC-hH----HHHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHH
Confidence            34577888899999999999887765 23    1222 22333333 344555667799999999999987888888877


Q ss_pred             HHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccccc-ccc-ccccc
Q 047130          434 TYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKY-AGY-QKRNI  485 (815)
Q Consensus       434 ~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~~~-~~~-~~r~i  485 (815)
                      +.+... -.++.+-.-..-.-+. +.=++.||++|.+--++.|. +-+ +.|++
T Consensus       176 ~s~kLA-p~Llg~IaVAAYsYMa-LVPiiqPpimklLttkkER~I~M~~~~r~V  227 (399)
T TIGR03136       176 ASLILA-KDLFVPISIIAYLYLS-LTYAGYPYLIKLLVPKKYRGLEVEMEFPDV  227 (399)
T ss_pred             HHHhhh-hHhHHHHHHHHHHHHH-HHhcccchHHHhhcCHHHHcccCccCCCCC
Confidence            765422 2222222222222222 22456899999877544332 222 55544

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=90.27  E-value=2.8  Score=40.85  Aligned_cols=98  Identities=14%  Similarity=0.232  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhhhCCC--hhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH
Q 047130           80 VAFAVTHACHFVLKRFGIP--MIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM  157 (815)
Q Consensus        80 lil~~~~~~~~llkrl~~P--~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~  157 (815)
                      +.+.++.+.+.+++++|+|  ..+|-++++.++.-  .+..+           ...-..+.+++.+++--.+|.+++.+.
T Consensus         2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~   68 (156)
T TIGR03082         2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE-----------ITLPPWLLALAQVVIGILIGSRFTREV   68 (156)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHH
Confidence            3455677888999999998  55666666655441  12111           111234556777778889999999999


Q ss_pred             HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047130          158 IQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRIL  191 (815)
Q Consensus       158 l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~  191 (815)
                      +++..+... .++...+....++.+.++++.+..
T Consensus        69 l~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~  101 (156)
T TIGR03082        69 LAELKRLWP-AALLSTVLLLALSALLAWLLARLT  101 (156)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            977765443 345555666666677777776643

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

Probab=89.21  E-value=1  Score=53.81  Aligned_cols=96  Identities=14%  Similarity=0.138  Sum_probs=66.4

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHH--HHHHHhcccCCCCCCEEEEEEEe
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDS--EVLKEVKPENNFNQRVKYVVEMV  742 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~--~~l~~~~~~~~~~~~v~y~e~~V  742 (815)
                      ..+|++.-.+++....-+..|.|+|+..+++.|++|+.+|+.....+...+.+++  ++.+++..+    -...|. ..|
T Consensus       248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae----~~~l~~-~dv  322 (890)
T COG2205         248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAE----IVTLYG-GDV  322 (890)
T ss_pred             cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCe----EEEEeC-CcH
Confidence            4699999999999999999999999999999999999988554433333344442  222333221    123333 223


Q ss_pred             cCcHHHHHHHHhhCCCccEEEEcccCC
Q 047130          743 NEGQETLAKIQSVVPKYDLVIVGRRDN  769 (815)
Q Consensus       743 ~~g~~~~~~i~~~~~~~DLiivG~~~~  769 (815)
                      .  .++.++.+..+.  --+++|++.+
T Consensus       323 ~--~~i~~ya~~~~~--TkiViG~~~~  345 (890)
T COG2205         323 A--KAIARYAREHNA--TKIVIGRSRR  345 (890)
T ss_pred             H--HHHHHHHHHcCC--eeEEeCCCcc
Confidence            2  347777787665  8999999987

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=88.71  E-value=2.6  Score=45.44  Aligned_cols=111  Identities=17%  Similarity=0.226  Sum_probs=70.7

Q ss_pred             HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHh
Q 047130          357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYN  436 (815)
Q Consensus       357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~  436 (815)
                      ++++=|+-|.-+|..+|++-+... ++    ..++-..+-++ ...+++.+...+++.+|+..+|.+=..-|-.++.+.+
T Consensus        68 ~~l~P~LIF~GIGAmtDFgpllan-P~----~~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~  141 (360)
T PF03977_consen   68 NGLFPPLIFMGIGAMTDFGPLLAN-PK----TLLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS  141 (360)
T ss_pred             cchhhHHHHHHHhHHHhhHHHHhC-HH----HHHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence            577888899999999999887765 33    22222222233 3455666777799999999999987888888877766


Q ss_pred             hcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 047130          437 ISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSR  475 (815)
Q Consensus       437 ~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~  475 (815)
                      ... -..+.+-.-..-..+. +.=.+.||++|.+--++.
T Consensus       142 ~LA-p~LlgpIaVaAYsYMa-LvPiiqPpimklLttkke  178 (360)
T PF03977_consen  142 KLA-PHLLGPIAVAAYSYMA-LVPIIQPPIMKLLTTKKE  178 (360)
T ss_pred             hhh-HHHHHHHHHHHHHHHH-HHhhhhhHHHHHhcCHHH
Confidence            422 2222222222222222 235678999998775443

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=88.23  E-value=25  Score=36.21  Aligned_cols=111  Identities=18%  Similarity=0.190  Sum_probs=78.2

Q ss_pred             hhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 047130          345 GSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIM  424 (815)
Q Consensus       345 ~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m  424 (815)
                      ++.+..-+++-+-.+..|+|       =+.+.+..+  |.  .+..-++++.+.-++.+++.+++++.+..-.  .  .+
T Consensus        61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik~~--w~--~I~~g~~vGs~~ai~s~~llak~~g~~~~~~--~--Sl  125 (230)
T COG1346          61 GQWINFLLGPATVALAVPLY-------KQRHLIKRH--WK--PILAGVLVGSVVAIISGVLLAKLFGLSPELI--L--SL  125 (230)
T ss_pred             cHHHHHHHHHHHHHHhhHHH-------HHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--H--Hh
Confidence            34555556666666777777       344555544  43  4555666666777888888899988876433  2  35


Q ss_pred             hhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130          425 STKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFL  470 (815)
Q Consensus       425 ~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~l  470 (815)
                      .||....=+...+..+.|-+.+-+-..+++.-++...++|++.+.+
T Consensus       126 ~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         126 LPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             cccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7999998888888888888877666667777777778888888875

>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes

Probab=87.99  E-value=55  Score=37.38  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH
Q 047130          213 FPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILT  249 (815)
Q Consensus       213 ~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll  249 (815)
                      +|++..+.+.+|+.+.+.--.+++++.+.|..+.++-
T Consensus       117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp  153 (423)
T PF02040_consen  117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP  153 (423)
T ss_pred             HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence            6888888888887555444578899999999998754

Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=87.40  E-value=5.7  Score=42.83  Aligned_cols=75  Identities=20%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHH
Q 047130          100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLL  179 (815)
Q Consensus       100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~  179 (815)
                      .+--|+.|+++|+.. ...+   +         .++.=-.+++.++.|..|..+|++.+.+.|.+.+.+++..+.+++..
T Consensus       169 lilpILiGmilGNld-~~~~---~---------~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~  235 (312)
T PRK12460        169 ALLPLVLGMILGNLD-PDMR---K---------FLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF  235 (312)
T ss_pred             HHHHHHHHHHHhccc-hhhH---H---------HHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            556677788888621 1111   1         11111223888999999999999999999999999999888888887


Q ss_pred             HHHHHHHH
Q 047130          180 GAAALEKM  187 (815)
Q Consensus       180 ~~~~~~~l  187 (815)
                      ++.+..++
T Consensus       236 ~~~i~rll  243 (312)
T PRK12460        236 NIFADRLV  243 (312)
T ss_pred             HHHHHHHh
Confidence            77777655

>COG2985 Predicted permease [General function prediction only]

Probab=85.73  E-value=2.5  Score=47.76  Aligned_cols=103  Identities=18%  Similarity=0.312  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhhcccChhH---HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH-HHhhccHH
Q 047130          139 TFGYILFQFLTGVKMDVSM---IQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV-VHSLSRFP  214 (815)
Q Consensus       139 ~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~-~ls~Ts~~  214 (815)
                      ++|+++|.+.+|+|--+..   +|+.+++-..+++.-    ++.+.++++++.+.++     +...+..|. +-+.||+|
T Consensus        62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~-----~~~~~~~Gm~sGAlTsTP  132 (544)
T COG2985          62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG-----IDLGLIAGMFSGALTSTP  132 (544)
T ss_pred             hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC-----CCHHHhhhhhcccccCCc
Confidence            8999999999999998775   678888876666543    3444555556655443     222222322 33567766


Q ss_pred             HHH---HHHHHhhhccChhHH--HHHHHHHHHHHHHHHHHH
Q 047130          215 SIA---CLVSDLRIINSELGR--LGLSCALVSEMIGLILTR  250 (815)
Q Consensus       215 vv~---~iL~el~ll~s~~g~--lals~a~v~D~~~~~ll~  250 (815)
                      ...   .+|+|++....-.-+  +.-+.+.---++++++.+
T Consensus       133 ~L~aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~~  173 (544)
T COG2985         133 GLGAAQDILRELGAPSQALDQMGMGYALAYPIGILGIILGA  173 (544)
T ss_pred             hhHHHHHHHHhhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            554   456666643221222  233334444455554443

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=84.70  E-value=52  Score=34.18  Aligned_cols=110  Identities=11%  Similarity=0.068  Sum_probs=72.2

Q ss_pred             hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHh
Q 047130          346 SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMS  425 (815)
Q Consensus       346 ~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~  425 (815)
                      +.+..-+.+-+-.+-.|+|       -+.+.+...  |.  .+.+-++++.+.-+++++..+++++.+..-  .  ..|.
T Consensus        65 ~~l~~lLgPAtVALAvPLY-------~q~~~lk~~--~~--~Il~~~~vG~~~~i~s~~~la~~lgl~~~~--~--~Sl~  129 (232)
T PRK04288         65 DIISFFLEPATIAFAIPLY-------KKRDVLKKY--WW--QILGGIVVGSVCSVLIIYLVAKLIQLDNAV--M--ASML  129 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HhHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHCcCHHH--H--HHHh
Confidence            3344445555556677766       344455543  32  345555566667778888888888887633  2  3367


Q ss_pred             hhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130          426 TKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFL  470 (815)
Q Consensus       426 ~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~l  470 (815)
                      +|....=+-..+..+.|-+.+-.-..++++-++-.+++|++.|++
T Consensus       130 pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~  174 (232)
T PRK04288        130 PQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF  174 (232)
T ss_pred             hHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999988888888888887666555566666667677777777763

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=83.83  E-value=8  Score=39.00  Aligned_cols=104  Identities=12%  Similarity=0.168  Sum_probs=59.1

Q ss_pred             HHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047130          329 FGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL  408 (815)
Q Consensus       329 lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~  408 (815)
                      ++++++|+++....+......++....  .+..-+|++-+.+.-|-..+.+-....+ ..+.+-+..+++-++++++..+
T Consensus         2 l~~li~Gi~lG~~~~~~~~~~~~~~~~--~L~lLLF~VGi~lG~~~~~l~~l~~~g~-~~Llipl~tIlGSllgg~l~~~   78 (191)
T PF03956_consen    2 LIALILGILLGYFLRPPFSLIDKISTY--ALYLLLFLVGIDLGSNREILRQLRSLGK-RALLIPLATILGSLLGGLLASL   78 (191)
T ss_pred             eeeHHHHHHHHHHhcccccccccHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666555422221222333322  3344445544444445222222111111 5677777788999999999999


Q ss_pred             hcCCChHHHHHHHHHHhhhhhHHHHHH
Q 047130          409 YCKVPKRDAFALALIMSTKGIVEISTY  435 (815)
Q Consensus       409 ~~~~~~~~~~~lgl~m~~kG~v~li~~  435 (815)
                      +.++|++|++.++.+++=-......+.
T Consensus        79 ll~~~~~~~lav~sG~GwYSlsg~~i~  105 (191)
T PF03956_consen   79 LLGLSLKESLAVASGFGWYSLSGVLIT  105 (191)
T ss_pred             HhcCCHHHHHHHHccCcHHHhHHHHHH
Confidence            999999999999877655444444443

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PRK04972 putative transporter; Provisional

Probab=82.57  E-value=6.8  Score=46.41  Aligned_cols=115  Identities=21%  Similarity=0.355  Sum_probs=76.2

Q ss_pred             hCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH---HHhcchhhHHHHHH
Q 047130           95 FGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM---IQKTGKKSLFTGLL  171 (815)
Q Consensus        95 l~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~~~  171 (815)
                      +++-.--|-+++|+++|-  ++...... +-.|   ......+.++|+.+|+..+|+.--.+.   +++.+.+.+.++.+
T Consensus       408 ~~LG~agG~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~  481 (558)
T PRK04972        408 FGIGNAAGLLFAGIMLGF--LRANHPTF-GYIP---QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLI  481 (558)
T ss_pred             eeccccHHHHHHHHHHHh--ccccCCCc-eeeC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence            344556688999999884  33322111 1122   456678999999999999999877654   45667777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHH
Q 047130          172 TLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSD  222 (815)
Q Consensus       172 ~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~e  222 (815)
                      -.++|.++++.+++++.+.      ++ ..+.=+++-+.|++|.+......
T Consensus       482 ~t~~~~~~~~~~~~~~~k~------~~-~~~~G~~aG~~t~~~~l~~~~~~  525 (558)
T PRK04972        482 VSLVPVVICFLFGAYVLRM------NR-ALLFGAIMGARTCAPAMEIISDT  525 (558)
T ss_pred             HHHHHHHHHHHHHHHHHcC------CH-HHHHHHHhCCCCCcHHHHHHHhh
Confidence            8888888888888665542      12 22333355678888887766543

>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional

Probab=81.76  E-value=1.9  Score=46.82  Aligned_cols=133  Identities=20%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             HHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCChHHHHHHHHHHhhhhhH
Q 047130          356 VSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL-----YCKVPKRDAFALALIMSTKGIV  430 (815)
Q Consensus       356 ~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~-----~~~~~~~~~~~lgl~m~~kG~v  430 (815)
                      .++++=|+.|.-+|..+|++-+...+..     .++-..+-++-+.....+..     +.+++.+|+..+|.+=..-|-.
T Consensus       132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~-----~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT  206 (433)
T PRK15475        132 GSGVAPLVIFMGVGAMTDFGPLLANPRT-----LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT  206 (433)
T ss_pred             hcchHHHHHHHhccHHhcchHHhhCHHH-----HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence            4577888899999999999887655321     22222222332222222222     2378999999999987788888


Q ss_pred             HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccccccccccCCCccceeEEee
Q 047130          431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPS-RKYAGYQKRNIMQHSKASGELRILACI  501 (815)
Q Consensus       431 ~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~-~~~~~~~~r~i~~~~~~~~elrILv~i  501 (815)
                      ++.+.+... -.++.+-.-..-..|.++ =++.||++|.+--++ |+.+-++.|++      ....||+.|+
T Consensus       207 sIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~V------Sk~eKIlFPi  270 (433)
T PRK15475        207 AIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETERKIRMVQLRTV------SKREKILFPV  270 (433)
T ss_pred             HHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCCC------CccchhHHHH
Confidence            877665422 122222221112222222 456899999876543 33334445544      2334666554

>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional

Probab=81.54  E-value=2  Score=46.74  Aligned_cols=133  Identities=19%  Similarity=0.122  Sum_probs=74.8

Q ss_pred             HHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCChHHHHHHHHHHhhhhhH
Q 047130          356 VSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL-----YCKVPKRDAFALALIMSTKGIV  430 (815)
Q Consensus       356 ~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~-----~~~~~~~~~~~lgl~m~~kG~v  430 (815)
                      .++++=|+.|.-+|..+|++-+...+..     .++-..+-++-+.....+..     +.+++.+|+..+|.+=..-|-.
T Consensus       132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~-----~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT  206 (433)
T PRK15476        132 GSGVAPLVIFMGVGAMTDFGPLLANPRT-----LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT  206 (433)
T ss_pred             hcchHHHHHHHhccHHhcchHHhhCHHH-----HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence            4577888899999999999887655321     22222222332222222222     2378999999999987788888


Q ss_pred             HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccccccccccCCCccceeEEee
Q 047130          431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPS-RKYAGYQKRNIMQHSKASGELRILACI  501 (815)
Q Consensus       431 ~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~-~~~~~~~~r~i~~~~~~~~elrILv~i  501 (815)
                      ++.+.+... -.++.+-.-..-..|.+ .=++.||++|.+--++ |+..-++.|++      ....||+.|+
T Consensus       207 sIfvsskLA-P~Llg~IaVAAYSYMaL-VPiIQPpimklLTTkkER~I~M~~lr~V------Sk~eKIlFPi  270 (433)
T PRK15476        207 AIYLSGKLA-PELLGAIAVAAYSYMAL-VPLIQPPIMKALTTEKERKIRMVQLRTV------SKREKILFPV  270 (433)
T ss_pred             HHHhHhhhh-hHhHHHHHHHHHHHHHH-HhcccchHHHhccCHHHhCccCCCCCCC------CccchhHHHH
Confidence            877665422 12222222111222222 2456899999876443 33334445544      2334666554

>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional

Probab=81.54  E-value=2  Score=46.74  Aligned_cols=133  Identities=19%  Similarity=0.122  Sum_probs=74.8

Q ss_pred             HHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCChHHHHHHHHHHhhhhhH
Q 047130          356 VSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL-----YCKVPKRDAFALALIMSTKGIV  430 (815)
Q Consensus       356 ~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~-----~~~~~~~~~~~lgl~m~~kG~v  430 (815)
                      .++++=|+.|.-+|..+|++-+...+..     .++-..+-++-+.....+..     +.+++.+|+..+|.+=..-|-.
T Consensus       132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~-----~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT  206 (433)
T PRK15477        132 GSGVAPLVIFMGVGAMTDFGPLLANPRT-----LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT  206 (433)
T ss_pred             hcchHHHHHHHhccHHhcchHHhhCHHH-----HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence            4577888899999999999887655321     22222222332222222222     2378999999999987788888


Q ss_pred             HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccccccccccCCCccceeEEee
Q 047130          431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPS-RKYAGYQKRNIMQHSKASGELRILACI  501 (815)
Q Consensus       431 ~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~-~~~~~~~~r~i~~~~~~~~elrILv~i  501 (815)
                      ++.+.+... -.++.+-.-..--.|.+ .=++.||++|.+--++ |+..-++.|++      ....||+.|+
T Consensus       207 sIfvsskLA-P~Llg~IaVAAYSYMaL-VPiIQPpimklLTTkkER~I~M~~lr~V------Sk~eKIlFPi  270 (433)
T PRK15477        207 AIYLSGKLA-PELLGAIAVAAYSYMAL-VPLIQPPIMKALTTEKERKIRMVQLRTV------SKREKILFPV  270 (433)
T ss_pred             HHHhHhhhh-hHhHHHHHHHHHHHHHH-HhcccchHHHhccCHHHhCccCCCCCCC------CccchhHHHH
Confidence            877665422 12222222111222222 2456899999876443 33334445544      2334666554

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=81.36  E-value=26  Score=39.67  Aligned_cols=167  Identities=10%  Similarity=0.082  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHhh--hCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130           76 LQIIVAFAVTHACHFVLKR--FGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM  153 (815)
Q Consensus        76 l~i~lil~~~~~~~~llkr--l~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~  153 (815)
                      ..+.+.+.+++.+...++.  +.+|.++.-+++|+++.+. +..... .+     -..+.++.++++.+-+++-.+=..+
T Consensus       222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni-~~~~~~-~~-----~~~~~i~~I~~~sLdlfl~~AlmsL  294 (398)
T TIGR00210       222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNP-LSFKKF-PW-----VAERAVSVIGNVSLSLFLAIALMSL  294 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-HHHhCc-cc-----cchHHHHHHHHHHHHHHHHHHHHhC
Confidence            4555666677777777765  7799999999999998863 222111 00     1244899999999999998888899


Q ss_pred             ChhHHHhcchhhHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcchHHHHHHHHHHHhhccHHHH-HHHH-HHhhhccChh
Q 047130          154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAA-LEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSI-ACLV-SDLRIINSEL  230 (815)
Q Consensus       154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~-~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv-~~iL-~el~ll~s~~  230 (815)
                      ++..+....-..+.+.+.+.+...+....+ ...+++.++   ..-..+-..|..+..|+.++. .+.+ +++|-.+...
T Consensus       295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd---aaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af  371 (398)
T TIGR00210       295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD---AAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAF  371 (398)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH---HHHHhcccccccccchHHHHHHHHHHHhccCCCCcce
Confidence            999999999999999888888877654332 233333211   001122344555555544322 2222 3334322222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 047130          231 GRLGLSCALVSEMIGLILTRSA  252 (815)
Q Consensus       231 g~lals~a~v~D~~~~~ll~v~  252 (815)
                      =-+=+-.+.+-|+...+++...
T Consensus       372 ~ivPlvgaf~id~~n~~~i~~f  393 (398)
T TIGR00210       372 IVVPLVGAFFIDIINALVIKQF  393 (398)
T ss_pred             ehhhhHHHHHHHHhhHHHHHHH
Confidence            2333455777777776655443

>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit

Probab=81.24  E-value=4.9  Score=43.22  Aligned_cols=112  Identities=18%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             hHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------ChHHHHHHHHHHhhhh
Q 047130          355 MVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKV------PKRDAFALALIMSTKG  428 (815)
Q Consensus       355 ~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~------~~~~~~~lgl~m~~kG  428 (815)
                      +.++++=|+.|.-+|..+|++-+...+ +    ..++-..+=++- ..+++.+.+.++      +.+|+..+|.+=..-|
T Consensus        60 i~~~l~P~LIFlGIGAmtDFgpllanP-~----~~llGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADG  133 (354)
T TIGR01109        60 IGSGIAPLLIFMGIGALTDFGPLLANP-R----TLLLGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADG  133 (354)
T ss_pred             HhcchHHHHHHHhccHHhhhHHHHhCh-H----HHHHHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCC
Confidence            345788889999999999998876553 2    112222222222 234444555566      7799999998877778


Q ss_pred             hHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047130          429 IVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPS  474 (815)
Q Consensus       429 ~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~  474 (815)
                      -.++.+.+... -.++.+-.-..-.-+. +.=.+.||++|.+--++
T Consensus       134 Pt~If~s~~la-p~Llg~IaVAAYsYMa-LvPiiqPpimklLttkk  177 (354)
T TIGR01109       134 PTAIYLSGKLA-PELLAAIAVAAYSYMA-LVPIIQPPIMKALTSEK  177 (354)
T ss_pred             chhhhhHhhhh-hHHHHHHHHHHHHHHH-HHhcccchHHHhhcChH
Confidence            88776655321 1122222111112222 22456899999876443

This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=80.11  E-value=31  Score=37.72  Aligned_cols=134  Identities=11%  Similarity=0.137  Sum_probs=78.7

Q ss_pred             hhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHH
Q 047130           94 RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTL  173 (815)
Q Consensus        94 rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~  173 (815)
                      -++.|.+++.+++ +++......         +|..-.+.++.+++...-+-||..|+.++.+.+++..|........-.
T Consensus       179 ~~~nP~iia~i~G-l~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl  248 (321)
T TIGR00946       179 LIKFPPLWAPLLS-VILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF  248 (321)
T ss_pred             HHhCCChHHHHHH-HHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence            3578888876655 555532221         233346789999999999999999999999888777666655544444


Q ss_pred             -HHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH
Q 047130          174 -LIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILT  249 (815)
Q Consensus       174 -~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll  249 (815)
                       +.|.+. +.+...++.    +    ....-..+..+...+++...++.+.--.+.   +.+-+...++-+++++.+
T Consensus       249 il~P~i~-~~~~~~~~l----~----~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tl  313 (321)
T TIGR00946       249 LVQPAVM-AGISKLIGL----R----GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISL  313 (321)
T ss_pred             HHHHHHH-HHHHHHhCC----C----hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHH
Confidence             344443 333333321    1    122344455566666666667665432222   444444444545554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	815
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 74/476 (15%), Positives = 147/476 (30%), Gaps = 118/476 (24%)

Query: 240 VSEMIGLILTRSAIWIASIYH----AP-----LHSAYRNLGIMVVYLLAVVFVVRPAMLW 290
           V + +  +L  +  ++ S        P     ++   R+       + A   V R     
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 291 VVKQT-PEGKPVNSLHIHNIIMLALGAG--------YISDLFGQHVYFGPFVFGLAVPAG 341
            ++Q   E +P  ++ I    +L  G+G         +S      + F   +F L +   
Sbjct: 139 KLRQALLELRPAKNVLIDG--VL--GSGKTWVALDVCLSYKVQCKMDFK--IFWLNL--K 190

Query: 342 ----PPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVL 397
               P     +++KL   +   +      S++++  +  I+     L KS      ++VL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 398 -----AKVATTMIPPLYCK--VPKRDAFALALIMSTKGIVEISTYNISRNI-ESLTDQMF 449
                AK        L CK  +  R    +   +S      IS  + S  +       + 
Sbjct: 251 LNVQNAKAWNAF--NLSCKILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 450 S-FLTVEI------------LVTAIIIPILVKFL--YDPSRKYAGYQKRNIMQHSKA--- 491
             +L                   +II   +   L  +D  +     +   I++ S     
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 492 SGELR----ILACIYRPD-NIPAII------------------KFLQASCPKRGSLVTVY 528
             E R     L+ ++ P  +IP I+                  K  + S  ++    +  
Sbjct: 368 PAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 529 VLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPP 588
            +  I L        +  K++ +   +RS    ++  + + +         +    + PP
Sbjct: 427 SIPSIYLE-------LKVKLENEYALHRS----IVDHYNIPKT--------FDSDDLIPP 467

Query: 589 KL---------MHEDVCMLA-LDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCS 634
            L          H           L  +V L F    F++  I  D     A N S
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDST---AWNAS 517

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 75/549 (13%), Positives = 147/549 (26%), Gaps = 169/549 (30%)

Query: 235 LSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQ 294
             C  V +M   IL++  I    I  +   +            L           W +  
Sbjct: 33  FDCKDVQDMPKSILSKEEI--DHIIMSK-DAVSG------TLRL----------FWTLLS 73

Query: 295 TPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGL--AVPAGPPLGSAL-VEK 351
             E           ++   +      +      Y   F+          P + + + +E+
Sbjct: 74  KQE----------EMVQKFVEEVLRIN------Y--KFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 352 LDPMVSG--LFIPLVVTSASMRTNLSDIKLL----DDNLA--------KSTAVIVAVVVL 397
            D + +   +F    V+       L    LL      N+         K+   +   V L
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKT--WVALDVCL 172

Query: 398 A-KVATTMIPPLY------CKVPKRDAFAL----ALIMSTKGIVEISTYNISRNIESLTD 446
           + KV   M   ++      C  P+     L      I          + NI   I S+  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 447 QMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDN 506
                                             + R +++       L +L       N
Sbjct: 233 ----------------------------------ELRRLLKSKPYENCLLVL------LN 252

Query: 507 I--PAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVIL 564
           +           SC     L+T     + D    A    IS      T++     ++++L
Sbjct: 253 VQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLL 308

Query: 565 SF------KLFEEKNWGTAC-VYPFTAISP-PKLMHEDVCM------LALDKLASIVVLP 610
            +       L  E          P   +S   + + + +        +  DKL +I    
Sbjct: 309 KYLDCRPQDLPRE-----VLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTI---- 358

Query: 611 FHRKWFIDGSIES-DDNTKRAL--NCSVLERAPCSVGILIDRGRIGRFISSELSL---GS 664
                 I+ S+   +    R +    SV    P S  I              LSL     
Sbjct: 359 ------IESSLNVLEPAEYRKMFDRLSVF---PPSAHIPTIL----------LSLIWFDV 399

Query: 665 SFRVAMIFLGGSDDREALTLAKRMSQNT--SINLTVFRFIVKTDEMISTNWEKVLDSEVL 722
                M+ +   +     +L ++  + +  SI        VK +   + +   ++D   +
Sbjct: 400 IKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYNI 455

Query: 723 KEVKPENNF 731
            +    ++ 
Sbjct: 456 PKTFDSDDL 464

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 9/37 (24%)

Query: 481 QKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQAS 517
           +K+ +    K    L++    Y  D+ PA+   ++A+
Sbjct: 18  EKQAL---KKLQASLKL----YADDSAPALA--IKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	815
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.89
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	99.83
3olq_A	319	Universal stress protein E; structural genomics, P	99.8
3loq_A	294	Universal stress protein; structural genomics, PSI	99.79
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.79
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	99.74
3fdx_A	143	Putative filament protein / universal stress PROT;	99.3
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	99.29
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	99.29
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	99.29
3tnj_A	150	Universal stress protein (USP); structural genomic	99.29
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	99.23
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	99.23
3dlo_A	155	Universal stress protein; unknown function, struct	99.21
2z08_A	137	Universal stress protein family; uncharacterized c	99.21
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	99.2
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.2
3fg9_A	156	Protein of universal stress protein USPA family; A	99.19
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	99.13
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	98.99
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	98.87
3olq_A	319	Universal stress protein E; structural genomics, P	98.76
3loq_A	294	Universal stress protein; structural genomics, PSI	98.73
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	98.59
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	98.54
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	98.49
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	98.47
2z08_A	137	Universal stress protein family; uncharacterized c	98.4
3dlo_A	155	Universal stress protein; unknown function, struct	98.4
3tnj_A	150	Universal stress protein (USP); structural genomic	98.38
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	98.37
3fdx_A	143	Putative filament protein / universal stress PROT;	98.34
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	98.32
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	98.3
3fg9_A	156	Protein of universal stress protein USPA family; A	98.3
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	98.23
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	98.2
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	98.0
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	97.83
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.45
3g40_A	294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	90.15

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=99.89  E-value=3.6e-24  Score=233.42  Aligned_cols=303  Identities=12%  Similarity=0.089  Sum_probs=218.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhHH----Hhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130          133 TLDLVATFGYILFQFLTGVKMDVSMI----QKTGK--KSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV  206 (815)
Q Consensus       133 ~l~~la~lgli~~lF~~Gle~d~~~l----~~~~k--~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~  206 (815)
                      ..+.+.+-.+.+|+|.+|+|+|.+.+    ++.+|  .+...++.|+++|++++..    +..       ....+.....
T Consensus        59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~~-------~~~~~~~gw~  127 (388)
T 1zcd_A           59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FNY-------ADPITREGWA  127 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GCC-------SSTTHHHHTS
T ss_pred             HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----Hhc-------CChhhhhhhH
Confidence            45677788999999999999999887    55544  3788899999999987422    111       1122445556


Q ss_pred             HHhhccHHHHHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130          207 VHSLSRFPSIACLVSDLRI-INSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR  285 (815)
Q Consensus       207 ~ls~Ts~~vv~~iL~el~l-l~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r  285 (815)
                      +.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++..    ++.+   .. .+...+++++..     
T Consensus       128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~~~~---~~-~l~~~~~~~~~~-----  194 (388)
T 1zcd_A          128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----NDLS---MA-SLGVAAVAIAVL-----  194 (388)
T ss_dssp             SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----CCCC---HH-HHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcc---HH-HHHHHHHHHHHH-----
Confidence            6777999999999998755 55667799999999999999999988753    2222   11 111111111111     


Q ss_pred             HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC----CchhHHHHhhhhhHHHhhH
Q 047130          286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP----PLGSALVEKLDPMVSGLFI  361 (815)
Q Consensus       286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~----~~~~~l~~kl~~~~~~l~l  361 (815)
                          ++.+|..    ++....+..+ . +.+.+.++..|+|+.+|+|++|+++|..+    +..+++++++++++..+++
T Consensus       195 ----~~l~r~~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~il  264 (388)
T 1zcd_A          195 ----AVLNLCG----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLIL  264 (388)
T ss_dssp             ----HHHHHTT----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHH
T ss_pred             ----HHHHHhc----chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence                2223322    1223333333 2 24567779999999999999999999853    3478899999999999999


Q ss_pred             HHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHH----HHhhhhc------CCChHHHHHHHHHHhhhhhH
Q 047130          362 PLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATT----MIPPLYC------KVPKRDAFALALIMSTKGIV  430 (815)
Q Consensus       362 PlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~----~l~~~~~------~~~~~~~~~lgl~m~~kG~v  430 (815)
                      |+| |+..|+++|...+......   ....+++..+++|++|+    ++..|+.      +++|+|...+|++++.++++
T Consensus       265 PlFaFanaGv~l~~~~~~~l~~~---~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftm  341 (388)
T 1zcd_A          265 PLFAFANAGVSLQGVTLDGLTSI---LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTM  341 (388)
T ss_dssp             HHHHHHHCCCCCSSSCCCTHHHH---SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHH
T ss_pred             HHHHHHhcCeeecccchhhccCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHH
Confidence            999 9999999997432211010   12244445588999884    4444444      89999999999999999999


Q ss_pred             HHHHHhhcccccc--cchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047130          431 EISTYNISRNIES--LTDQMFSFLTVEILVTAIIIPILVKFLYD  472 (815)
Q Consensus       431 ~li~~~~~~~~~~--i~~~~~~~lv~~~ll~t~i~~~lv~~ly~  472 (815)
                      ++++++++++.+.  +.++.+..+++++++++++++.+.++.++
T Consensus       342 sL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~~  385 (388)
T 1zcd_A          342 SIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLR  385 (388)
T ss_dssp             HHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred             HHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999998876  36677999999999999998888776553

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=99.83  E-value=1.6e-19  Score=193.38  Aligned_cols=254  Identities=13%  Similarity=0.081  Sum_probs=176.4

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHH-HHHHHHHhc
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVIL-SFKLFEEKN  573 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~-af~~~~~~~  573 (815)
                      -|||+|+|++++...+++.+..++  +..+..++++|+++ +          +          ..++.++ ..+.+. . 
T Consensus         8 ~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~-~----------~----------~~~~~l~~~~~~~~-~-   62 (290)
T 3mt0_A            8 RSILVVIEPDQLEGLALKRAQLIA--GVTQSHLHLLVCEK-R----------R----------DHSAALNDLAQELR-E-   62 (290)
T ss_dssp             CEEEEECCSSCSCCHHHHHHHHHH--HHHCCEEEEEEECS-S----------S----------CCHHHHHHHHHHHH-H-
T ss_pred             ceEEEEeCCCccchHHHHHHHHHH--HhcCCeEEEEEeeC-c----------H----------HHHHHHHHHHHHHh-h-
Confidence            489999999999999999999998  44678999999987 1          0          0111222 222222 2 


Q ss_pred             CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcc
Q 047130          574 WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIG  653 (815)
Q Consensus       574 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~  653 (815)
                       .+++++..+..+  .+..+.|++.|+++++||||||.|++.+.++.+      ++++.++|++++||||.++.....  
T Consensus        63 -~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~~~--  131 (290)
T 3mt0_A           63 -EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTARP--  131 (290)
T ss_dssp             -TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCCSC--
T ss_pred             -CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEEecCCCC--
Confidence             457777776533  478999999999999999999999987776665      444555999999999999853321  


Q ss_pred             cccccccccCCcceEEEEecCCcc-------HHHHHHHHHHHhhCCCeEEEEEEeeecCccc------c-ccchhhhhHH
Q 047130          654 RFISSELSLGSSFRVAMIFLGGSD-------DREALTLAKRMSQNTSINLTVFRFIVKTDEM------I-STNWEKVLDS  719 (815)
Q Consensus       654 ~~~~~~~~~~~~~~I~~~f~gg~D-------dreAL~~a~rma~~~~v~ltvl~~~~~~~~~------~-~~~~~~~~d~  719 (815)
                              . ..++|+++++|+++       .+.|+++|.++++..+++++++|+.++....      . .++.+++ .+
T Consensus       132 --------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-~~  201 (290)
T 3mt0_A          132 --------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEAR-YR  201 (290)
T ss_dssp             --------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHH-HH
T ss_pred             --------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHH-HH
Confidence                    1 46899999999998       7999999999999999999999998642210      0 0111111 12


Q ss_pred             HHHHHhcccCCC-CCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCC
Q 047130          720 EVLKEVKPENNF-NQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED  798 (815)
Q Consensus       720 ~~l~~~~~~~~~-~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d  798 (815)
                      +.++++..++.- .......+-  +-++++.+++++.+.  ||++||++++      .|+.+|    =+|-..+-+... 
T Consensus       202 ~~l~~~~~~~g~~~~~~~v~~g--~~~~~I~~~a~~~~~--dLiVmG~~g~------~~~~~~----~~Gsv~~~vl~~-  266 (290)
T 3mt0_A          202 EACRTFQAEYGFSDEQLHIEEG--PADVLIPRTAQKLDA--VVTVIGTVAR------TGLSGA----LIGNTAEVVLDT-  266 (290)
T ss_dssp             HHHHHHHHHHTCCTTTEEEEES--CHHHHHHHHHHHHTC--SEEEEECCSS------CCGGGC----CSCHHHHHHHTT-
T ss_pred             HHHHHHHHHcCCCcceEEEecc--CHHHHHHHHHHhcCC--CEEEECCCCC------cCCcce----ecchHHHHHHhc-
Confidence            334443333211 112222222  223456777777554  9999999987      667665    478888877776 


Q ss_pred             CCCcccEEEEeee
Q 047130          799 LPGRYSVLVVQQQ  811 (815)
Q Consensus       799 ~~~~~SvLvvqq~  811 (815)
                        ++.+||||..+
T Consensus       267 --~~~pVLvv~~~  277 (290)
T 3mt0_A          267 --LESDVLVLKPD  277 (290)
T ss_dssp             --CSSEEEEECCH
T ss_pred             --CCCCEEEECCC
Confidence              67799999754

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=99.80  E-value=2.5e-19  Score=194.28  Aligned_cols=277  Identities=9%  Similarity=0.038  Sum_probs=178.8

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc-
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN-  573 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-  573 (815)
                      -|||+|+|+++++..+++.+..++  ++.+..++++|+++-.....+.......  .........++..+.++++.+.. 
T Consensus         8 k~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~   83 (319)
T 3olq_A            8 QNLLVVIDPNQDDQPALRRAVYIV--QRNGGRIKAFLPVYDLSYDMTTLLSPDE--RNAMRKGVINQKTAWIKQQARYYL   83 (319)
T ss_dssp             CEEEEECCTTCSCCHHHHHHHHHH--HHHCCEEEEEEEECCGGGGCTTTSCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcccHHHHHHHHHHH--HHcCCeEEEEEEecccchhhccccChhh--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999998  4467899999998632110000000000  00000011122233344443322 


Q ss_pred             CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcc
Q 047130          574 WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIG  653 (815)
Q Consensus       574 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~  653 (815)
                      ..+++++..+...  .+..+.|++.|+++++||||||.|++.+.++.+.+++      .++|++++||||.++.++..  
T Consensus        84 ~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~------~~~vl~~~~~PVlvv~~~~~--  153 (319)
T 3olq_A           84 EAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPL------DWQLLRKCPAPVWMVKDKEW--  153 (319)
T ss_dssp             HTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHH------HHHHHHHCSSCEEEEESSCC--
T ss_pred             hcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccccccc------HHHHHhcCCCCEEEecCccc--
Confidence            1567888777622  4899999999999999999999999887776664444      45999999999999864421  


Q ss_pred             cccccccccCCcceEEEEecCCcc-------HHHHHHHHHHHhhCC--CeEEEEEEeeecCcccc--------ccchh--
Q 047130          654 RFISSELSLGSSFRVAMIFLGGSD-------DREALTLAKRMSQNT--SINLTVFRFIVKTDEMI--------STNWE--  714 (815)
Q Consensus       654 ~~~~~~~~~~~~~~I~~~f~gg~D-------dreAL~~a~rma~~~--~v~ltvl~~~~~~~~~~--------~~~~~--  714 (815)
                               ...++|+++++|.++       ++.|+++|.++++..  +++++++|+..+.....        .++..  
T Consensus       154 ---------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~  224 (319)
T 3olq_A          154 ---------PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNA  224 (319)
T ss_dssp             ---------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHH
T ss_pred             ---------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHH
Confidence                     236799999999995       499999999999987  99999999986522110        00011  


Q ss_pred             -hhhHHHHHHHhcccCCCC-CCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchh
Q 047130          715 -KVLDSEVLKEVKPENNFN-QRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGN  792 (815)
Q Consensus       715 -~~~d~~~l~~~~~~~~~~-~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd  792 (815)
                       ++..++.++++..++... ......+.  +-..++.+++++.+  .||++||++++      .|+.+|    =+|-+.+
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~~~~v~~g--~~~~~I~~~a~~~~--~dLiV~G~~g~------~~~~~~----~~Gsv~~  290 (319)
T 3olq_A          225 LRGQHLIAMKELRQKFSIPEEKTHVKEG--LPEQVIPQVCEELN--AGIVVLGILGR------TGLSAA----FLGNTAE  290 (319)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGEEEEES--CHHHHHHHHHHHTT--EEEEEEECCSC------CSTHHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcccEEEecC--CcHHHHHHHHHHhC--CCEEEEeccCc------cCCccc----cccHHHH
Confidence             111124444444333211 11222221  12344666666644  59999999987      566655    4777777


Q ss_pred             hhhcCCCCCcccEEEEeee
Q 047130          793 CLVTEDLPGRYSVLVVQQQ  811 (815)
Q Consensus       793 ~las~d~~~~~SvLvvqq~  811 (815)
                      -+...   ++.+||||..+
T Consensus       291 ~vl~~---~~~pVLvv~~~  306 (319)
T 3olq_A          291 QLIDH---IKCDLLAIKPD  306 (319)
T ss_dssp             HHHTT---CCSEEEEECCT
T ss_pred             HHHhh---CCCCEEEECCC
Confidence            77766   67799999765

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=99.79  E-value=3.4e-19  Score=191.15  Aligned_cols=265  Identities=14%  Similarity=0.068  Sum_probs=175.8

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW  574 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  574 (815)
                      -|||+|+|+++++..+++.+..++  +..+..++++|+++.+..... .................++.++.+.+..+.  
T Consensus        23 ~~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--   97 (294)
T 3loq_A           23 NAMLLPTDLSENSFKVLEYLGDFK--KVGVEEIGVLFVINLTKLSTV-SGGIDIDHYIDEMSEKAEEVLPEVAQKIEA--   97 (294)
T ss_dssp             CEEEEECCSCTGGGGGGGGHHHHH--HTTCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccEEEecCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEecCcccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            489999999999999999999998  457899999999986542110 000000000000011223333333333322  


Q ss_pred             cceEEEE-EEE-ecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCc
Q 047130          575 GTACVYP-FTA-ISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRI  652 (815)
Q Consensus       575 ~~v~v~~-~~~-vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~  652 (815)
                      .+++++. .+. .+   +..+.|  .|+++++||||||.|++.+..+.+      ++++.++|++++||||.++.+... 
T Consensus        98 ~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~~-  165 (294)
T 3loq_A           98 AGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFKKIL------LGSVSEGVLHDSKVPVYIFKHDMV-  165 (294)
T ss_dssp             TTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHHHHH------HCCHHHHHHHHCSSCEEEECCCTT-
T ss_pred             cCCCcceeEeeccC---ChhHhe--eeccCCCCEEEEcCCCCcccccee------eccHHHHHHhcCCCCEEEecCccc-
Confidence            4677776 443 34   889999  999999999999999987665544      344556999999999999854431 


Q ss_pred             ccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCC
Q 047130          653 GRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFN  732 (815)
Q Consensus       653 ~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~  732 (815)
                         .     ....++|+++++|.+++++|+++|.++++..+++++++++.++..      .++.++ ++.+.++..  +.
T Consensus       166 ---~-----~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~-~~~~~l~~~--~~  228 (294)
T 3loq_A          166 ---V-----NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLR-VMEEVIGAE--GI  228 (294)
T ss_dssp             ---T-----TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHH-HHHHHHHHT--TC
T ss_pred             ---c-----CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHH-HHHHHHHHc--CC
Confidence               0     134679999999999999999999999999999999999986522      122222 333333332  11


Q ss_pred             CCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130          733 QRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ  809 (815)
Q Consensus       733 ~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  809 (815)
                       .+.+   .+..|   +++.+++++.  ++||++||++++      .++.+|    =+|-..+-+...   ++.+||||.
T Consensus       229 -~~~~---~~~~g~~~~~I~~~a~~~--~~dLlV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pvLvv~  289 (294)
T 3loq_A          229 -EVHV---HIESGTPHKAILAKREEI--NATTIFMGSRGA------GSVMTM----ILGSTSESVIRR---SPVPVFVCK  289 (294)
T ss_dssp             -CEEE---EEECSCHHHHHHHHHHHT--TCSEEEEECCCC------SCHHHH----HHHCHHHHHHHH---CSSCEEEEC
T ss_pred             -cEEE---EEecCCHHHHHHHHHHhc--CcCEEEEeCCCC------CCccce----eeCcHHHHHHhc---CCCCEEEEC
Confidence             1222   22233   3455555553  459999999987      566554    467777777765   567999997


Q ss_pred             eec
Q 047130          810 QQQ  812 (815)
Q Consensus       810 q~~  812 (815)
                      +..
T Consensus       290 ~~~  292 (294)
T 3loq_A          290 RGD  292 (294)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            753

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=99.79  E-value=8.5e-19  Score=189.44  Aligned_cols=276  Identities=16%  Similarity=0.140  Sum_probs=175.5

Q ss_pred             ccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCc-cc-hhhhhccccccCCcccchHHHHHHHHHH
Q 047130          493 GELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAA-PL-FISHKMQKKTVSNRSYSENVILSFKLFE  570 (815)
Q Consensus       493 ~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~-~~-~~~~~~~~~~~~~~~~~~~i~~af~~~~  570 (815)
                      .--|||+|+|++++...+++.+..++  ++.+..++++|+++ +.... +. ....+..   .......++.++.+.+..
T Consensus        18 ~~~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~   91 (309)
T 3cis_A           18 SSLGIIVGIDDSPAAQVAVRWAARDA--ELRKIPLTLVHAVS-PEVATWLEVPLPPGVL---RWQQDHGRHLIDDALKVV   91 (309)
T ss_dssp             CTTEEEEECCSSHHHHHHHHHHHHHH--HHHTCCEEEEEECC-CCCCCTTCCCCCHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCHHHHHHHHHHHHHH--HhcCCcEEEEEEec-CcccccccCCCCchhh---HHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999998  44678999999987 22111 00 0000000   000111222222222222


Q ss_pred             Hhc---CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130          571 EKN---WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI  647 (815)
Q Consensus       571 ~~~---~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv  647 (815)
                      +..   ..+++++..+..+   +..+.|++.|+  ++||||||.|++.+..+.+      ++++.++|++++||||.++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~  160 (309)
T 3cis_A           92 EQASLRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCPVVIIH  160 (309)
T ss_dssp             HHHCSSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSCEEEEC
T ss_pred             HHhcccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCCEEEEc
Confidence            221   1257777766544   89999999996  8999999999987776655      45555699999999999986


Q ss_pred             ccCCcccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc--cc---cch----hhhhH
Q 047130          648 DRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM--IS---TNW----EKVLD  718 (815)
Q Consensus       648 drg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~--~~---~~~----~~~~d  718 (815)
                      .+..  ..     .....++|+++++|+++++.|+++|.++++..+++++++++.++....  ..   ++.    ++.++
T Consensus       161 ~~~~--~~-----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~  233 (309)
T 3cis_A          161 DEDS--VM-----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLA  233 (309)
T ss_dssp             TTCC--CS-----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHH
T ss_pred             CCcc--cC-----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHH
Confidence            4431  00     012357999999999999999999999999999999999998652211  00   111    11122


Q ss_pred             HHHHHHhcccCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCC
Q 047130          719 SEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED  798 (815)
Q Consensus       719 ~~~l~~~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d  798 (815)
                       ++++++..++.+ -.+.+   .+..|. ..+.|.+...+.||++||++++      .++.+|    =+|-+.+-+... 
T Consensus       234 -~~~~~~~~~~~~-~~~~~---~~~~g~-~~~~I~~~a~~adliV~G~~~~------~~~~~~----l~Gsv~~~vl~~-  296 (309)
T 3cis_A          234 -ERLAGWQERYPN-VAITR---VVVRDQ-PARQLVQRSEEAQLVVVGSRGR------GGYAGM----LVGSVGETVAQL-  296 (309)
T ss_dssp             -HHHTTHHHHCTT-SCEEE---EEESSC-HHHHHHHHHTTCSEEEEESSCS------SCCTTC----SSCHHHHHHHHH-
T ss_pred             -HHHHHHHhhCCC-CcEEE---EEEcCC-HHHHHHHhhCCCCEEEECCCCC------CCcccc----ccCcHHHHHHhc-
Confidence             333333322111 12222   233442 4444444444789999999987      566554    467777777665 


Q ss_pred             CCCcccEEEEeee
Q 047130          799 LPGRYSVLVVQQQ  811 (815)
Q Consensus       799 ~~~~~SvLvvqq~  811 (815)
                        ++.+||||..+
T Consensus       297 --~~~pVlvv~~~  307 (309)
T 3cis_A          297 --ARTPVIVARES  307 (309)
T ss_dssp             --CSSCEEEECC-
T ss_pred             --CCCCEEEeCCC
Confidence              56799999754

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=99.74  E-value=2.2e-17  Score=174.37  Aligned_cols=258  Identities=13%  Similarity=0.060  Sum_probs=167.1

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhh-ccccc----cC-CcccchHHHHHHHHH
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHK-MQKKT----VS-NRSYSENVILSFKLF  569 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~-~~~~~----~~-~~~~~~~i~~af~~~  569 (815)
                      |||+|+|++++...+++.+..++  ++.+..++++|+++.+....+...... .....    .. .....++..+.++++
T Consensus         2 ~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (268)
T 3ab8_A            2 RILLATDGSPQARGAEALAEWLA--YKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV   79 (268)
T ss_dssp             CEEEECCSCGGGHHHHHHHHHHH--HHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCHHHHHHHHHHHHHH--HHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999998  446789999999885421000000000 00000    00 001112222333333


Q ss_pred             HHhc-CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCcc-ccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130          570 EEKN-WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKW-FIDGSIESDDNTKRALNCSVLERAPCSVGILI  647 (815)
Q Consensus       570 ~~~~-~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~-~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv  647 (815)
                      .+.. ..+++++..+..+   +..+.|++.  ++++||||||.|++. +.++.+      ++++.++|++++||||.++.
T Consensus        80 ~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVlvv~  148 (268)
T 3ab8_A           80 RQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVLLAP  148 (268)
T ss_dssp             HHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEEEEC
T ss_pred             HHHHHhCCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCEEEEC
Confidence            3221 1456677777655   899999998  899999999999987 766655      45556699999999998874


Q ss_pred             ccCCcccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcc
Q 047130          648 DRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKP  727 (815)
Q Consensus       648 drg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~  727 (815)
                      .+.           . ..++|+++++|+++++.|+++|.++++..+++++++++.++..     +.++.++ ++.+.++.
T Consensus       149 ~~~-----------~-~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-----~~~~~l~-~~~~~l~~  210 (268)
T 3ab8_A          149 GEP-----------V-ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-----RAEAWAL-EAEAYLRD  210 (268)
T ss_dssp             SSC-----------C-CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH-----HHHHHHH-HHHHHHHH
T ss_pred             CCC-----------C-CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH-----HHHHHHH-HHHHHHHH
Confidence            321           1 3579999999999999999999999999999999999976521     1222232 33333332


Q ss_pred             cCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEE
Q 047130          728 ENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLV  807 (815)
Q Consensus       728 ~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLv  807 (815)
                      .  +. .+.+   .+.+| +..+.|.+...++||++||+          |+.+|    =+|-..+-+...   ++.+|||
T Consensus       211 ~--~~-~~~~---~~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~pvlv  266 (268)
T 3ab8_A          211 H--GV-EASA---LVLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN---AQGPVLT  266 (268)
T ss_dssp             T--TC-CEEE---EEECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSSCEEE
T ss_pred             c--CC-ceEE---EEeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc---CCCCEEE
Confidence            2  11 2222   23344 35555666665669999999          23332    367666666665   5668888


Q ss_pred             E
Q 047130          808 V  808 (815)
Q Consensus       808 v  808 (815)
                      |
T Consensus       267 v  267 (268)
T 3ab8_A          267 A  267 (268)
T ss_dssp             E
T ss_pred             e
Confidence            6

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=99.30  E-value=4.7e-12  Score=119.80  Aligned_cols=138  Identities=20%  Similarity=0.112  Sum_probs=96.5

Q ss_pred             ceeEEeeecCCC--hHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHh
Q 047130          495 LRILACIYRPDN--IPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK  572 (815)
Q Consensus       495 lrILv~i~~~~~--~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~  572 (815)
                      -|||+|+|++++  +..+++.+..++  +..+..++++|+++.+...........  ..........++..+.++++.++
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~   77 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEA--RIDDAEVHFLTVIPSLPYYASLGMAYT--AELPGMDELREGSETQLKEIAKK   77 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHH--HHHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHH--HhcCCeEEEEEEecCCccccccccccc--chhhhHHHHHHHHHHHHHHHHHH
Confidence            379999999999  999999999988  446789999999986432111100000  00011122345566667777665


Q ss_pred             cC-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          573 NW-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       573 ~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      .. .++.++..+..+   +..+.|++.|+++++||||||.|+ .+..+.+      ++++.++|++++||||.++
T Consensus        78 ~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~------~Gs~~~~v~~~~~~pVlvv  142 (143)
T 3fdx_A           78 FSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTYL------LGSNAAAVVRHAECSVLVV  142 (143)
T ss_dssp             SCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS------SCHHHHHHHHHCSSEEEEE
T ss_pred             cCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeeee------eccHHHHHHHhCCCCEEEe
Confidence            43 345677777766   899999999999999999999995 6665555      5566679999999999886

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=99.29  E-value=3.5e-12  Score=121.14  Aligned_cols=137  Identities=11%  Similarity=0.035  Sum_probs=97.1

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW  574 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  574 (815)
                      -|||+|+|++++...+++.+..++  +..+..++++|+++.+......... ...   .......++..+.++++.+...
T Consensus         6 ~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~~~~~~~   79 (146)
T 3s3t_A            6 TNILVPVDSSDAAQAAFTEAVNIA--QRHQANLTALYVVDDSAYHTPALDP-VLS---ELLDAEAAHAKDAMRQRQQFVA   79 (146)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEECCCCCCGGGHH-HHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEcCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCcccccccccc-ccH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999998  4467899999999965432211100 000   0001112233334444433322


Q ss_pred             -cce-EEEEEEEecCCCChhHHHHH-HHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          575 -GTA-CVYPFTAISPPKLMHEDVCM-LALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       575 -~~v-~v~~~~~vs~~~~m~~dI~~-~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                       .++ .++..+..+   +..+.|++ .|+++++||||||.|++.+..+.+      ++++.++|++++||||.|+
T Consensus        80 ~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV  145 (146)
T 3s3t_A           80 TTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIVI  145 (146)
T ss_dssp             TSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEEE
T ss_pred             hcCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEEe
Confidence             456 777777666   89999999 999999999999999988776665      4555669999999999886

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=99.29  E-value=1.5e-11  Score=118.96  Aligned_cols=143  Identities=15%  Similarity=0.127  Sum_probs=95.8

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccC----CCccch-----h-hhhccccccCCcccchHHHH
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRG----RAAPLF-----I-SHKMQKKTVSNRSYSENVIL  564 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~----r~~~~~-----~-~~~~~~~~~~~~~~~~~i~~  564 (815)
                      -|||+|+|+++++..+++.+..++  +..+.+++++|+++...    ...+..     . +.+............++..+
T Consensus         6 ~~ILv~vD~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (162)
T 1mjh_A            6 KKILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   83 (162)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence            489999999999999999999999  45688999999998531    000000     0 00000000000011122233


Q ss_pred             HHHHHHHhc-CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCce
Q 047130          565 SFKLFEEKN-WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSV  643 (815)
Q Consensus       565 af~~~~~~~-~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsV  643 (815)
                      .++++.+.. ..+++++..+..+   +..+.|++.|+++++||||||.|++.+.++.+      ++++.++|++++||||
T Consensus        84 ~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~~~pV  154 (162)
T 1mjh_A           84 KMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKPV  154 (162)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSCE
T ss_pred             HHHHHHHHHHHcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhCCCCE
Confidence            344433221 1457777777666   89999999999999999999999998776665      5566679999999999


Q ss_pred             EEEec
Q 047130          644 GILID  648 (815)
Q Consensus       644 gIlvd  648 (815)
                      .|+..
T Consensus       155 lvv~~  159 (162)
T 1mjh_A          155 LVVKR  159 (162)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99853

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=99.29  E-value=2.3e-12  Score=122.39  Aligned_cols=138  Identities=10%  Similarity=0.043  Sum_probs=93.4

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccc--hhhhhccc-cccCCcccchHHHHHHHHHHHh
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPL--FISHKMQK-KTVSNRSYSENVILSFKLFEEK  572 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~--~~~~~~~~-~~~~~~~~~~~i~~af~~~~~~  572 (815)
                      |||+|+|+++++..+++.+..++  ++.+..++++|+++.+......  ........ .........++.++.+.+..+.
T Consensus         4 ~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (147)
T 3hgm_A            4 RIMVPVDGSKGAVKALEKGVGLQ--QLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE   81 (147)
T ss_dssp             EEEEECCSBHHHHHHHHHHHHHH--HHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999998  4467899999999854210000  00000000 0000112223333444433333


Q ss_pred             cCcceEE---EEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          573 NWGTACV---YPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       573 ~~~~v~v---~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                        .++++   +..+..+   +..+.|++.|+++++||||||.|++.+..+.+      ++++.++|++++||||.|+
T Consensus        82 --~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV  147 (147)
T 3hgm_A           82 --LGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLVV  147 (147)
T ss_dssp             --TTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEEC
T ss_pred             --cCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEEC
Confidence              34444   6666666   89999999999999999999999988776655      4555669999999999874

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=99.29  E-value=4.9e-12  Score=120.76  Aligned_cols=141  Identities=11%  Similarity=0.046  Sum_probs=88.4

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW  574 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  574 (815)
                      -|||+|+|+++++..+++.+..++  +..+..++++|+++......+.+................++..+.++++.++..
T Consensus         7 ~~ILv~vD~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   84 (150)
T 3tnj_A            7 HHILLAVDFSSEDSQVVQKVRNLA--SQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG   84 (150)
T ss_dssp             SEEEEECCCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            479999999999999999999998  446789999999885422100110000000000111223455566666665532


Q ss_pred             cceE-EEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130          575 GTAC-VYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR  649 (815)
Q Consensus       575 ~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr  649 (815)
                        +. ++..+..+   +..+.|++.|+++++||||||.|++.+.. .+-++.      .++|++++||||.|+..+
T Consensus        85 --~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~------~~~vl~~~~~pVlvv~~~  148 (150)
T 3tnj_A           85 --IDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGST------ANSVLHYAKCDVLAVRLR  148 (150)
T ss_dssp             --CCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------CCCH------HHHHHHHCSSEEEEEECC
T ss_pred             --CCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecch------HHHHHHhCCCCEEEEeCC
Confidence              22 23444445   89999999999999999999999988776 554444      459999999999998543

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=99.23  E-value=2.4e-11  Score=118.74  Aligned_cols=145  Identities=12%  Similarity=0.083  Sum_probs=94.0

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccc-hhhh---hc-cccccCCcccchHHHHHHHHH
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPL-FISH---KM-QKKTVSNRSYSENVILSFKLF  569 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~-~~~~---~~-~~~~~~~~~~~~~i~~af~~~  569 (815)
                      -|||+|+|++++...+++.+..++  +..+..++++|+++........ -...   .. ...........++..+.++++
T Consensus         6 ~~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (170)
T 2dum_A            6 RKVLFPTDFSEGAYRAVEVFEKRN--KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK   83 (170)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHC--CSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999999  4578999999998843211000 0000   00 000000011112223333333


Q ss_pred             HHhcC-cceEEEE--EEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          570 EEKNW-GTACVYP--FTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       570 ~~~~~-~~v~v~~--~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      .+... .++.++.  .+..+   +..+.|++.|+++++||||||.|++.+..+.+      ++++.++|++++||||.|+
T Consensus        84 ~~~~~~~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVlvv  154 (170)
T 2dum_A           84 AEEVKRAFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVLII  154 (170)
T ss_dssp             HHHHHHHTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEEEE
T ss_pred             HHHHHHcCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEEEE
Confidence            32211 3455555  55555   89999999999999999999999987766555      5566679999999999998


Q ss_pred             eccC
Q 047130          647 IDRG  650 (815)
Q Consensus       647 vdrg  650 (815)
                      ..+.
T Consensus       155 ~~~~  158 (170)
T 2dum_A          155 KEVD  158 (170)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            6544

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=99.23  E-value=3e-11  Score=113.51  Aligned_cols=133  Identities=11%  Similarity=0.063  Sum_probs=94.9

Q ss_pred             eeEEeeecCCChHHHHHHHHHhC-CCCCCCceEEEEEeeeccCCCccchhhhhccccccCCc-ccchHHHHHHHHHHHhc
Q 047130          496 RILACIYRPDNIPAIIKFLQASC-PKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNR-SYSENVILSFKLFEEKN  573 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~-~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~-~~~~~i~~af~~~~~~~  573 (815)
                      |||+|+|+++++..+++.+..++ ..  .+..++++|+++.+......  .....+...... ...++.++.+.+..+. 
T Consensus         3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-   77 (138)
T 3idf_A            3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEA--VLAAYDEIEMKEEEKAKLLTQKFSTFFTE-   77 (138)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCccccc--ccCcHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            79999999999999999999998 44  57899999999865432110  000000000001 1222333333333322 


Q ss_pred             CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          574 WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       574 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                       .+++++..+..+   +..+.|++.|+  ++||||||.|++.+.++.+ |+.++      +|++++||||.++
T Consensus        78 -~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~------~vl~~~~~pVlvv  137 (138)
T 3idf_A           78 -KGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQD------DFIQKAPIPVLIV  137 (138)
T ss_dssp             -TTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTC------HHHHHCSSCEEEE
T ss_pred             -CCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHH------HHHhcCCCCEEEe
Confidence             467777777666   89999999998  9999999999998888888 88877      9999999999886

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=99.21  E-value=2.5e-11  Score=117.12  Aligned_cols=130  Identities=17%  Similarity=0.127  Sum_probs=92.1

Q ss_pred             cceeEEeeec-CCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHh
Q 047130          494 ELRILACIYR-PDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK  572 (815)
Q Consensus       494 elrILv~i~~-~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~  572 (815)
                      --|||+|+|+ ++++..+++.+..++  +..+..++++|+++.+....     .+       .....++.++.+.+..+.
T Consensus        24 ~~~ILv~vD~~s~~s~~al~~A~~la--~~~~a~l~llhV~~~~~~~~-----~~-------~~~~~~~~l~~~~~~~~~   89 (155)
T 3dlo_A           24 YMPIVVAVDKKSDRAERVLRFAAEEA--RLRGVPVYVVHSLPGGGRTK-----DE-------DIIEAKETLSWAVSIIRK   89 (155)
T ss_dssp             CCCEEEECCSSSHHHHHHHHHHHHHH--HHHTCCEEEEEEECCSTTSC-----HH-------HHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEEcCCCccc-----HH-------HHHHHHHHHHHHHHHHHh
Confidence            3489999999 999999999999998  44678999999998543110     00       011123333333333333


Q ss_pred             cCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          573 NWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       573 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                        .++.++..+.+ ...+..+.|++.|+++++||||||.|++.+..+.+      ++++.++|++++||||.|+
T Consensus        90 --~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvV  154 (155)
T 3dlo_A           90 --EGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICI  154 (155)
T ss_dssp             --TTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEE
T ss_pred             --cCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEEe
Confidence              23444443333 22489999999999999999999999987776655      5556669999999999886

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=99.21  E-value=1.8e-11  Score=115.07  Aligned_cols=132  Identities=12%  Similarity=0.028  Sum_probs=91.6

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG  575 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  575 (815)
                      |||+|+|++++...+++.+..++  +..+..++++|+++....  + +.....   ........++..+.++++.+.  .
T Consensus         4 ~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~--~-~~~~~~---~~~~~~~~~~~~~~l~~~~~~--~   73 (137)
T 2z08_A            4 TILLAYDGSEHARRAAEVAKAEA--EAHGARLIVVHAYEPVPD--Y-LGEPFF---EEALRRRLERAEGVLEEARAL--T   73 (137)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEECC--------------------CHHHHHHHHHHHHHHHH--H
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEecCCCc--c-ccccch---HHHHHHHHHHHHHHHHHHHHH--c
Confidence            79999999999999999999998  446789999999873211  1 100000   000111223444556665544  2


Q ss_pred             ce-EEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          576 TA-CVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       576 ~v-~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      ++ +++..+..+   +..+.|++.|+++++||||||.|++.+..+.+      ++++.++|++++||||.|+
T Consensus        74 g~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvv  136 (137)
T 2z08_A           74 GVPKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV  136 (137)
T ss_dssp             CCCGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEEE
T ss_pred             CCCccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEEe
Confidence            34 444445444   89999999999999999999999987776655      5566679999999999886

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=99.20  E-value=8.4e-11  Score=115.43  Aligned_cols=144  Identities=8%  Similarity=0.090  Sum_probs=88.8

Q ss_pred             ceeEEeeecCC---------ChHHHHHHHHHhCCCC-CCCceEEEEEeeeccCCCcc----chh-hhhccccccCCcccc
Q 047130          495 LRILACIYRPD---------NIPAIIKFLQASCPKR-GSLVTVYVLHLIDLRGRAAP----LFI-SHKMQKKTVSNRSYS  559 (815)
Q Consensus       495 lrILv~i~~~~---------~~~~~i~la~~~~~~~-~~~~~v~~Lhlvel~~r~~~----~~~-~~~~~~~~~~~~~~~  559 (815)
                      -|||+|+|+++         ....+++.+..++... ..+..++++|+++.......    ... .....   .......
T Consensus         6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   82 (175)
T 2gm3_A            6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFR---DMRQSNK   82 (175)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHH---HHTTSHH
T ss_pred             cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHH---HHHHHHH
Confidence            48999999999         8999999999865222 25789999999864321100    000 00000   0000111


Q ss_pred             hHHHHHHHHHHHhcC-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhc
Q 047130          560 ENVILSFKLFEEKNW-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLER  638 (815)
Q Consensus       560 ~~i~~af~~~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~  638 (815)
                      ++..+.++++.+... .++.++..+..+   +..+.|++.|+++++||||||.|++.++.+.+      ++++.++|+++
T Consensus        83 ~~~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~------~Gsva~~vl~~  153 (175)
T 2gm3_A           83 AKGLHLLEFFVNKCHEIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAFCVKH  153 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhh------cCchHHHHHhC
Confidence            122233333332211 456777766655   89999999999999999999999988776665      44555699999


Q ss_pred             CCCceEEEeccC
Q 047130          639 APCSVGILIDRG  650 (815)
Q Consensus       639 ApCsVgIlvdrg  650 (815)
                      +||||.|+....
T Consensus       154 a~~pVlvv~~~~  165 (175)
T 2gm3_A          154 AECPVMTIKRNA  165 (175)
T ss_dssp             CSSCEEEEECCG
T ss_pred             CCCCEEEEcCCc
Confidence            999999987554

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=99.20  E-value=3.4e-11  Score=117.17  Aligned_cols=141  Identities=13%  Similarity=0.030  Sum_probs=92.5

Q ss_pred             ccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEE--EeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHH
Q 047130          493 GELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVL--HLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFE  570 (815)
Q Consensus       493 ~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~L--hlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  570 (815)
                      .--|||+|+|+++++..+++.+..++  + .+.+++++  |+++.+....+......  ..........++.++.+.+..
T Consensus        16 ~~~~ILv~vD~s~~s~~al~~A~~lA--~-~~a~l~ll~a~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~   90 (163)
T 1tq8_A           16 AYKTVVVGTDGSDSSMRAVDRAAQIA--G-ADAKLIIASAYLPQHEDARAADILKDE--SYKVTGTAPIYEILHDAKERA   90 (163)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHH--T-TTSEEEEEEECCC----------------------CCTHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCHHHHHHHHHHHHHh--C-CCCEEEEEEeeeccCcccccccccccH--HHHHHHHHHHHHHHHHHHHHH
Confidence            34589999999999999999999999  4 67899999  88774421011000000  000011122333444333333


Q ss_pred             HhcCcceE-EEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130          571 EKNWGTAC-VYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR  649 (815)
Q Consensus       571 ~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr  649 (815)
                      +.  .+++ ++..+..+   +..+.|++.|+++++||||||.|++.++.+.+.      +++.++|++++||||.|+..+
T Consensus        91 ~~--~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~l------GSva~~vl~~a~~PVlvV~~~  159 (163)
T 1tq8_A           91 HN--AGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAGRLL------GSVPANVSRRAKVDVLIVHTT  159 (163)
T ss_dssp             HT--TTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHT------BBHHHHHHHHTTCEEEEECCC
T ss_pred             HH--cCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCcccceee------ccHHHHHHHhCCCCEEEEeCC
Confidence            32  3565 77776655   899999999999999999999999877655554      445569999999999998543

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=99.19  E-value=2.5e-11  Score=116.74  Aligned_cols=137  Identities=12%  Similarity=0.089  Sum_probs=92.9

Q ss_pred             ccceeEEeee--cCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHH
Q 047130          493 GELRILACIY--RPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFE  570 (815)
Q Consensus       493 ~elrILv~i~--~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  570 (815)
                      .--|||+|+|  +++++..+++.+..++  +..+..++++|+++.+..........+.   ........++.++.+.+..
T Consensus        14 ~~~~ILv~vD~~~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~   88 (156)
T 3fg9_A           14 VYRRILLTVDEDDNTSSERAFRYATTLA--HDYDVPLGICSVLESEDINIFDSLTPSK---IQAKRKHVEDVVAEYVQLA   88 (156)
T ss_dssp             CCC-EEEECCSCCCHHHHHHHHHHHHHH--HHHTCCEEEEEEECCCCTTCCCSSHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEEeCCCccccccCCHHH---HHHHHHHHHHHHHHHHHHH
Confidence            3458999999  9999999999999998  4467899999999865421110000000   0001112223333333322


Q ss_pred             HhcCcce-EEEEEEEe-cCCCChhHHHHHH-HHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          571 EKNWGTA-CVYPFTAI-SPPKLMHEDVCML-ALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       571 ~~~~~~v-~v~~~~~v-s~~~~m~~dI~~~-A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      +.  .++ .++..+.. +   +..+.|++. |+++++||||||.|++.+.+ .+.|+      +.++|++++||||.++
T Consensus        89 ~~--~g~~~~~~~v~~~g---~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs------~~~~vl~~a~~PVlvV  155 (156)
T 3fg9_A           89 EQ--RGVNQVEPLVYEGG---DVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGA------IGPRLARKAPISVIVV  155 (156)
T ss_dssp             HH--HTCSSEEEEEEECS---CHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSC------HHHHHHHHCSSEEEEE
T ss_pred             HH--cCCCceEEEEEeCC---CHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecc------hHHHHHHhCCCCEEEe
Confidence            22  345 47777776 5   899999999 99999999999999988775 35444      4459999999999886

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=99.13  E-value=1.3e-10  Score=109.63  Aligned_cols=134  Identities=10%  Similarity=0.038  Sum_probs=91.9

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeec-cCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDL-RGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW  574 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel-~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  574 (815)
                      |||+|+|++++...+++.+..++  +..+..++++|+++- +..... +......   .......++..+.++++.+.. 
T Consensus         4 ~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~~~~-   76 (141)
T 1jmv_A            4 HILVAVDLSEESPILLKKAVGIA--KRHDAKLSIIHVDVNFSDLYTG-LIDVNMS---SMQDRISTETQKALLDLAESV-   76 (141)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEECCGGGCCC-CEEHHHH---HHTTCCCCHHHHHHHHHHHHS-
T ss_pred             eEEEEecCchhhHHHHHHHHHHH--HhcCCEEEEEEEecCchhhhcc-ccccchH---HHHHHHHHHHHHHHHHHHHHc-
Confidence            79999999999999999999998  446789999999842 321111 0000000   001112244555666665542 


Q ss_pred             cceEE-EEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130          575 GTACV-YPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR  649 (815)
Q Consensus       575 ~~v~v-~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr  649 (815)
                       ++.+ +..+..+   +..+.|++.|+++++||||||.| +.+.++        ++++.++|++++||||.|+..+
T Consensus        77 -~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--------lgs~~~~vl~~~~~pVlvv~~~  139 (141)
T 1jmv_A           77 -DYPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--------LMSSTRQVMNTIKIDMLVVPLR  139 (141)
T ss_dssp             -SSCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--------HHHHHHHHHTTCCSEEEEEECC
T ss_pred             -CCCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--------hcchHHHHHhcCCCCEEEeeCC
Confidence             3333 3444444   78999999999999999999999 654321        5688889999999999998644

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=98.99  E-value=5.7e-10  Score=104.73  Aligned_cols=128  Identities=10%  Similarity=0.005  Sum_probs=83.6

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEee-ec-cCCCccchhhhhccccccCCcccchHHHHHHHHHHHh
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLI-DL-RGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK  572 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlv-el-~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~  572 (815)
                      -|||+|+|+++....+++.+..++  +..+..++++|++ +. +..  +.+................++..+.++++ +.
T Consensus         5 ~~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~   79 (138)
T 1q77_A            5 KVLLVLTDAYSDCEKAITYAVNFS--EKLGAELDILAVLEDVYNLE--RANVTFGLPFPPEIKEESKKRIERRLREV-WE   79 (138)
T ss_dssp             EEEEEEESTTCCCHHHHHHHHHHH--TTTCCEEEEEEECHHHHHHH--HHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HH
T ss_pred             cEEEEEccCCHhHHHHHHHHHHHH--HHcCCeEEEEEEeccccccc--ccccccCCCCChHHHHHHHHHHHHHHHHH-HH
Confidence            379999999999999999999998  4568899999998 63 110  00000000000000001112233334444 22


Q ss_pred             ---cCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          573 ---NWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       573 ---~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                         ...+ +++..+..+   +..+.|++.|+++++||||||.|++         +      +.++|++++||||.++
T Consensus        80 ~~~~~~~-~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~g~---------s------v~~~vl~~a~~PVlvv  137 (138)
T 1q77_A           80 KLTGSTE-IPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPS---------A------YLCKVIDGLNLASLIV  137 (138)
T ss_dssp             HHHSCCC-CCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCG---------G------GTHHHHHHSSSEEEEC
T ss_pred             HhhccCC-cceEEEEcC---CHHHHHHHHHHhcCCCEEEEeCCCC---------c------hHHHHHHhCCCceEee
Confidence               1233 555555444   8999999999999999999999876         2      2349999999999885

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=98.87  E-value=2.1e-09  Score=114.52  Aligned_cols=138  Identities=12%  Similarity=-0.031  Sum_probs=94.8

Q ss_pred             ccceeEEeeecCCC-------hHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHH
Q 047130          493 GELRILACIYRPDN-------IPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILS  565 (815)
Q Consensus       493 ~elrILv~i~~~~~-------~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~a  565 (815)
                      ..-|||+|+|++++       +..+++.+..++  +..+.+++++|+++.+.....  .+..     .......++..+.
T Consensus       133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~--~~~~-----~~~~~~~~~~~~~  203 (290)
T 3mt0_A          133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIA--GLAKATLHVISAHPSPMLSSA--DPTF-----QLSETIEARYREA  203 (290)
T ss_dssp             TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--HHTTCEEEEEEEEC-----------CH-----HHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHH--HHcCCeEEEEEEecCcccccc--Cchh-----HHHHHHHHHHHHH
Confidence            34589999999998       899999999888  446789999999985432110  0000     0001112334455


Q ss_pred             HHHHHHhcCcceE-EEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130          566 FKLFEEKNWGTAC-VYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG  644 (815)
Q Consensus       566 f~~~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg  644 (815)
                      ++++.++.  ++. ++..+..+   +..+.|++.|+++++||||||.|++.++.+.+      ++++.++|++++||||.
T Consensus       204 l~~~~~~~--g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~~pVL  272 (290)
T 3mt0_A          204 CRTFQAEY--GFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLESDVL  272 (290)
T ss_dssp             HHHHHHHH--TCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCSSEEE
T ss_pred             HHHHHHHc--CCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCCCCEE
Confidence            55565543  231 23334444   89999999999999999999999998887766      55566699999999999


Q ss_pred             EEeccC
Q 047130          645 ILIDRG  650 (815)
Q Consensus       645 Ilvdrg  650 (815)
                      ++..++
T Consensus       273 vv~~~~  278 (290)
T 3mt0_A          273 VLKPDD  278 (290)
T ss_dssp             EECCHH
T ss_pred             EECCCC
Confidence            986544

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=98.76  E-value=6.6e-09  Score=111.95  Aligned_cols=144  Identities=10%  Similarity=0.026  Sum_probs=96.7

Q ss_pred             cceeEEeeecCCC-------hHHHHHHHHHhCCCCCC--CceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHH
Q 047130          494 ELRILACIYRPDN-------IPAIIKFLQASCPKRGS--LVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVIL  564 (815)
Q Consensus       494 elrILv~i~~~~~-------~~~~i~la~~~~~~~~~--~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~  564 (815)
                      --|||+|+|+++.       ...+++.+..++.  ..  +..++++|+.+..........+..  ..........++..+
T Consensus       156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~--~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  231 (319)
T 3olq_A          156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSH--RIQKDPDVHLLSAYPVAPINIAIELPDF--DPNLYNNALRGQHLI  231 (319)
T ss_dssp             TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHH--HHCSSCCEEEEEEECCCSCSCCTTCTTC--CHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHH--hccCCCeEEEEEeecCcchhhhccCCcc--cHHHHHHHHHHHHHH
Confidence            4589999999995       4778888887773  34  679999999986543211000000  000001112234455


Q ss_pred             HHHHHHHhcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130          565 SFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG  644 (815)
Q Consensus       565 af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg  644 (815)
                      .++++.++... ..++..+..+   +..+.|++.|+++++||||||.|++.++.+.+      +|++.++|++++||||.
T Consensus       232 ~l~~~~~~~~~-~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~pVL  301 (319)
T 3olq_A          232 AMKELRQKFSI-PEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGRTGLSAAF------LGNTAEQLIDHIKCDLL  301 (319)
T ss_dssp             HHHHHHHHTTC-CGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSCCSTHHHH------HHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHHhCC-CcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCccCCcccc------ccHHHHHHHhhCCCCEE
Confidence            66666655321 1223334434   78999999999999999999999998776544      78888899999999999


Q ss_pred             EEeccCC
Q 047130          645 ILIDRGR  651 (815)
Q Consensus       645 Ilvdrg~  651 (815)
                      ++..++.
T Consensus       302 vv~~~~~  308 (319)
T 3olq_A          302 AIKPDGF  308 (319)
T ss_dssp             EECCTTC
T ss_pred             EECCCCC
Confidence            9976653

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=98.73  E-value=1.6e-08  Score=107.67  Aligned_cols=123  Identities=11%  Similarity=-0.012  Sum_probs=93.0

Q ss_pred             CccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHH
Q 047130          492 SGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEE  571 (815)
Q Consensus       492 ~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  571 (815)
                      ...-||++|+|+++....+++.+..++  +..+..++++|+.+-..                     .++..+.+.++.+
T Consensus       168 ~~~~~Ilv~~d~s~~s~~al~~a~~la--~~~~~~l~ll~v~~~~~---------------------~~~~l~~~~~~l~  224 (294)
T 3loq_A          168 SLFDRVLVAYDFSKWADRALEYAKFVV--KKTGGELHIIHVSEDGD---------------------KTADLRVMEEVIG  224 (294)
T ss_dssp             CTTSEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEECSSSC---------------------CHHHHHHHHHHHH
T ss_pred             ccCCEEEEEECCCHHHHHHHHHHHHHh--hhcCCEEEEEEEccCch---------------------HHHHHHHHHHHHH
Confidence            344689999999999999999999988  44678999999986321                     1223333333333


Q ss_pred             hcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEec
Q 047130          572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILID  648 (815)
Q Consensus       572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvd  648 (815)
                      .  .++.++..+.-+   +..+.|++.|+++++||||||.|++.++.+.+      ++++.++|++++||||.++..
T Consensus       225 ~--~~~~~~~~~~~g---~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pvLvv~~  290 (294)
T 3loq_A          225 A--EGIEVHVHIESG---TPHKAILAKREEINATTIFMGSRGAGSVMTMI------LGSTSESVIRRSPVPVFVCKR  290 (294)
T ss_dssp             H--TTCCEEEEEECS---CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHH------HHCHHHHHHHHCSSCEEEECS
T ss_pred             H--cCCcEEEEEecC---CHHHHHHHHHHhcCcCEEEEeCCCCCCcccee------eCcHHHHHHhcCCCCEEEECC
Confidence            3  345566655444   89999999999999999999999988776554      566667999999999999853

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=98.59  E-value=6.1e-08  Score=104.05  Aligned_cols=134  Identities=9%  Similarity=-0.006  Sum_probs=90.5

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW  574 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  574 (815)
                      -+||+|+|+++....+++.+..++  +..+..++++|+.+..... +.  ...  ..........+.+.+.++.+.+. .
T Consensus       172 ~~Ilv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~-~~--~~~--~~~~~~~~~~~~l~~~~~~~~~~-~  243 (309)
T 3cis_A          172 APVLVGVDGSSASELATAIAFDEA--SRRNVDLVALHAWSDVDVS-EW--PGI--DWPATQSMAEQVLAERLAGWQER-Y  243 (309)
T ss_dssp             CCEEEECCSSHHHHHHHHHHHHHH--HHTTCCEEEEEESCSSCCT-TC--SSC--CHHHHHHHHHHHHHHHHTTHHHH-C
T ss_pred             CeEEEEeCCChHHHHHHHHHHHHH--HhcCCEEEEEEEeeccccc-CC--Ccc--cHHHHHHHHHHHHHHHHHHHHhh-C
Confidence            489999999999999999999888  3456899999998743211 00  000  00000000111122233333332 1


Q ss_pred             cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130          575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI  647 (815)
Q Consensus       575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv  647 (815)
                      .++.++..+..+   +..+.|.+.|+  ++||||||.|++.++.+.+      ++++.++|++++||||.++.
T Consensus       244 ~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv~  305 (309)
T 3cis_A          244 PNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVAR  305 (309)
T ss_dssp             TTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEEC
T ss_pred             CCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEeC
Confidence            356676666544   89999999997  8999999999998887766      45566699999999999984

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=98.54  E-value=2.3e-07  Score=87.45  Aligned_cols=128  Identities=16%  Similarity=0.223  Sum_probs=80.8

Q ss_pred             CcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc------c---chhhhhHHHHHHHhcccCCCCC-
Q 047130          664 SSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS------T---NWEKVLDSEVLKEVKPENNFNQ-  733 (815)
Q Consensus       664 ~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~------~---~~~~~~d~~~l~~~~~~~~~~~-  733 (815)
                      ..++|+++++|.++.+.|+++|.++|+..+++++++++.++......      +   +..++..++.++++.......+ 
T Consensus         4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~   83 (146)
T 3s3t_A            4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA   83 (146)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            46799999999999999999999999999999999999865221110      0   1111112234444443222111 


Q ss_pred             -CEEEEEEEecCc---HHHHH-HHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          734 -RVKYVVEMVNEG---QETLA-KIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       734 -~v~y~e~~V~~g---~~~~~-~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                       .+.+   .+..|   +++.+ ++++  .++||++||++++      .++.+|    -+|-.-+-+...   ++.+||||
T Consensus        84 ~~~~~---~~~~g~~~~~I~~~~a~~--~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlvV  145 (146)
T 3s3t_A           84 PNLKT---EISYGIPKHTIEDYAKQH--PEIDLIVLGATGT------NSPHRV----AVGSTTSYVVDH---APCNVIVI  145 (146)
T ss_dssp             CCCEE---EEEEECHHHHHHHHHHHS--TTCCEEEEESCCS------SCTTTC----SSCHHHHHHHHH---CSSEEEEE
T ss_pred             cceEE---EEecCChHHHHHHHHHhh--cCCCEEEECCCCC------CCcceE----EEcchHHHHhcc---CCCCEEEe
Confidence             2222   12223   33444 4443  4579999999986      455544    477777777766   56789987


Q ss_pred             e
Q 047130          809 Q  809 (815)
Q Consensus       809 q  809 (815)
                      .
T Consensus       146 ~  146 (146)
T 3s3t_A          146 R  146 (146)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=98.49  E-value=3.2e-07  Score=86.49  Aligned_cols=129  Identities=19%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCc-c---------cc---ccchhhhhHHHHHHHhcccCC-
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTD-E---------MI---STNWEKVLDSEVLKEVKPENN-  730 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~-~---------~~---~~~~~~~~d~~~l~~~~~~~~-  730 (815)
                      .++|+++++|.++.+.|+++|.++|+..+++++++++.++.. .         ..   ..+..++..++.++++..... 
T Consensus         2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (147)
T 3hgm_A            2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE   81 (147)
T ss_dssp             CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            469999999999999999999999999999999999986422 0         00   011111122234444332211 


Q ss_pred             -C--CCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEE
Q 047130          731 -F--NQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLV  807 (815)
Q Consensus       731 -~--~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLv  807 (815)
                       +  .+.+.+.-..=+-.+++.+.+++.  ++||++||+|++      .++.+|    -+|-.-+-+...   ++.+|||
T Consensus        82 ~g~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlv  146 (147)
T 3hgm_A           82 LGVPADKVRAFVKGGRPSRTIVRFARKR--ECDLVVIGAQGT------NGDKSL----LLGSVAQRVAGS---AHCPVLV  146 (147)
T ss_dssp             TTCCGGGEEEEEEESCHHHHHHHHHHHT--TCSEEEECSSCT------TCCSCC----CCCHHHHHHHHH---CSSCEEE
T ss_pred             cCCCccceEEEEecCCHHHHHHHHHHHh--CCCEEEEeCCCC------ccccce----eeccHHHHHHhh---CCCCEEE
Confidence             1  111122111111134455555553  469999999987      455444    467777777666   5668887


Q ss_pred             E
Q 047130          808 V  808 (815)
Q Consensus       808 v  808 (815)
                      |
T Consensus       147 V  147 (147)
T 3hgm_A          147 V  147 (147)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=98.47  E-value=7.6e-07  Score=83.05  Aligned_cols=126  Identities=13%  Similarity=0.122  Sum_probs=77.4

Q ss_pred             ceEEEEecCCccHHHHHHHHHHHh-hCCCeEEEEEEeeecCccccc---------cchhhhhHHHHHHHhcccCCCCCCE
Q 047130          666 FRVAMIFLGGSDDREALTLAKRMS-QNTSINLTVFRFIVKTDEMIS---------TNWEKVLDSEVLKEVKPENNFNQRV  735 (815)
Q Consensus       666 ~~I~~~f~gg~DdreAL~~a~rma-~~~~v~ltvl~~~~~~~~~~~---------~~~~~~~d~~~l~~~~~~~~~~~~v  735 (815)
                      ++|+++++|.++.+.|+++|.++| +..+++++++|+.++......         ++.+++..++.++++....... .+
T Consensus         2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~   80 (138)
T 3idf_A            2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEK-GI   80 (138)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            589999999999999999999999 999999999999875322100         0111011223444444332111 12


Q ss_pred             EEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          736 KYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       736 ~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                      .+. ..+..|. ..+.|.+...++||++||+|++      .++.+|   -  |-.-+-+...   ++.+||||
T Consensus        81 ~~~-~~v~~g~-~~~~I~~~a~~~dliV~G~~~~------~~~~~~---~--Gs~~~~vl~~---~~~pVlvv  137 (138)
T 3idf_A           81 NPF-VVIKEGE-PVEMVLEEAKDYNLLIIGSSEN------SFLNKI---F--ASHQDDFIQK---APIPVLIV  137 (138)
T ss_dssp             CCE-EEEEESC-HHHHHHHHHTTCSEEEEECCTT------STTSSC---C--CCTTCHHHHH---CSSCEEEE
T ss_pred             CeE-EEEecCC-hHHHHHHHHhcCCEEEEeCCCc------chHHHH---h--CcHHHHHHhc---CCCCEEEe
Confidence            221 2233342 3333333333889999999976      455444   2  6666666655   55688887

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=98.40  E-value=7.1e-07  Score=83.29  Aligned_cols=128  Identities=19%  Similarity=0.173  Sum_probs=79.4

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcc-cc---cc---chhhhhHHHHHHHhcccCCCCCCEEE
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDE-MI---ST---NWEKVLDSEVLKEVKPENNFNQRVKY  737 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~-~~---~~---~~~~~~d~~~l~~~~~~~~~~~~v~y  737 (815)
                      .++|+++++|.++++.|+++|.++|+..+++++++++.++... ..   .+   +..++..++.++++..+ .+...+.+
T Consensus         2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~   80 (137)
T 2z08_A            2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL-TGVPKEDA   80 (137)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH-HCCCGGGE
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH-cCCCccEE
Confidence            4699999999999999999999999999999999999864211 00   00   11111222455554432 11101112


Q ss_pred             EEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          738 VVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       738 ~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                      .-..=+-.+++.+++++.  ++||++||+|++      .++.++    -+|-..+-+...   ++.+||||
T Consensus        81 ~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlvv  136 (137)
T 2z08_A           81 LLLEGVPAEAILQAARAE--KADLIVMGTRGL------GALGSL----FLGSQSQRVVAE---APCPVLLV  136 (137)
T ss_dssp             EEEESSHHHHHHHHHHHT--TCSEEEEESSCT------TCCSCS----SSCHHHHHHHHH---CSSCEEEE
T ss_pred             EEEecCHHHHHHHHHHHc--CCCEEEECCCCC------chhhhh----hhccHHHHHHhc---CCCCEEEe
Confidence            111111134456666653  469999999986      455443    377777777766   56799987

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=98.40  E-value=2.8e-07  Score=88.47  Aligned_cols=128  Identities=10%  Similarity=0.070  Sum_probs=81.3

Q ss_pred             CcceEEEEecC-CccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCC-CCCEEEEEEE
Q 047130          664 SSFRVAMIFLG-GSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNF-NQRVKYVVEM  741 (815)
Q Consensus       664 ~~~~I~~~f~g-g~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-~~~v~y~e~~  741 (815)
                      ..++|+++++| .+..+.|+++|.++|+..+++++++++.++.... .++. ++..++.++++...... .-.+.. +..
T Consensus        23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~g~~~~~-~~~   99 (155)
T 3dlo_A           23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-KDED-IIEAKETLSWAVSIIRKEGAEGEE-HLL   99 (155)
T ss_dssp             CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-CHHH-HHHHHHHHHHHHHHHHHTTCCEEE-EEE
T ss_pred             ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-cHHH-HHHHHHHHHHHHHHHHhcCCCceE-EEE
Confidence            36799999999 9999999999999999999999999998653211 1111 11122333333322111 112222 222


Q ss_pred             ecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130          742 VNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ  809 (815)
Q Consensus       742 V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  809 (815)
                      +..|   +++.+++++.  ++||++||++++      .++.+|    -+|-+-+-+...   ++.+||||.
T Consensus       100 v~~G~~~~~I~~~a~~~--~~DLIV~G~~g~------~~~~~~----~lGSv~~~vl~~---a~~PVLvVr  155 (155)
T 3dlo_A          100 VRGKEPPDDIVDFADEV--DAIAIVIGIRKR------SPTGKL----IFGSVARDVILK---ANKPVICIK  155 (155)
T ss_dssp             ESSSCHHHHHHHHHHHT--TCSEEEEECCEE------CTTSCE----ECCHHHHHHHHH---CSSCEEEEC
T ss_pred             ecCCCHHHHHHHHHHHc--CCCEEEECCCCC------CCCCCE----EeccHHHHHHHh---CCCCEEEeC
Confidence            3333   3455555553  469999999976      455443    478777777776   667899984

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=98.38  E-value=5.8e-07  Score=85.15  Aligned_cols=129  Identities=14%  Similarity=0.198  Sum_probs=76.5

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc----------ccc---chhhhhHHHHHHHhcccCCC
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM----------IST---NWEKVLDSEVLKEVKPENNF  731 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~----------~~~---~~~~~~d~~~l~~~~~~~~~  731 (815)
                      .++|+++++|.++.+.|+++|.++|+..+++++++++.++....          ..+   +..++..++.++++..+...
T Consensus         6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   85 (150)
T 3tnj_A            6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI   85 (150)
T ss_dssp             CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999999999999999999998652210          000   11111122444444433211


Q ss_pred             CC-CEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEee
Q 047130          732 NQ-RVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQ  810 (815)
Q Consensus       732 ~~-~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq  810 (815)
                      .. .....+-  +-.+++.+++++.  ++||++||++++      .++. |    -+|-+-+-+...   ++.+||||..
T Consensus        86 ~~~~~~~~~g--~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~-~----~~Gs~~~~vl~~---~~~pVlvv~~  147 (150)
T 3tnj_A           86 DPAHRWLVWG--EPREEIIRIAEQE--NVDLIVVGSHGR------HGLA-L----LLGSTANSVLHY---AKCDVLAVRL  147 (150)
T ss_dssp             CGGGEEEEES--CHHHHHHHHHHHT--TCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEEC
T ss_pred             CcceEEEecC--CHHHHHHHHHHHc--CCCEEEEecCCC------CCcC-e----EecchHHHHHHh---CCCCEEEEeC
Confidence            11 1211111  1134455666653  469999999987      4443 3    577777777776   5679999975


Q ss_pred             e
Q 047130          811 Q  811 (815)
Q Consensus       811 ~  811 (815)
                      .
T Consensus       148 ~  148 (150)
T 3tnj_A          148 R  148 (150)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=98.37  E-value=1.4e-06  Score=83.63  Aligned_cols=130  Identities=16%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecC-----c---cc-----c-cc------chh---hhhHHHH
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKT-----D---EM-----I-ST------NWE---KVLDSEV  721 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~-----~---~~-----~-~~------~~~---~~~d~~~  721 (815)
                      .++|+++++|.++.+.|+++|.++|+..+++++++|+.++.     .   ..     . ..      +.+   ++..++.
T Consensus         5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (162)
T 1mjh_A            5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   84 (162)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999998653     1   10     0 10      011   1112244


Q ss_pred             HHHhcccCCCCCCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCC
Q 047130          722 LKEVKPENNFNQRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED  798 (815)
Q Consensus       722 l~~~~~~~~~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d  798 (815)
                      ++++....... .+.+... +..|   +++.+++++.  ++||++||+|++      .++.+|    =+|-+.+-+... 
T Consensus        85 l~~~~~~~~~~-g~~~~~~-v~~G~~~~~I~~~a~~~--~~dlIV~G~~g~------~~~~~~----~~GSv~~~vl~~-  149 (162)
T 1mjh_A           85 MENIKKELEDV-GFKVKDI-IVVGIPHEEIVKIAEDE--GVDIIIMGSHGK------TNLKEI----LLGSVTENVIKK-  149 (162)
T ss_dssp             HHHHHHHHHHT-TCEEEEE-EEEECHHHHHHHHHHHT--TCSEEEEESCCS------SCCTTC----SSCHHHHHHHHH-
T ss_pred             HHHHHHHHHHc-CCceEEE-EcCCCHHHHHHHHHHHc--CCCEEEEcCCCC------CCccce----EecchHHHHHHh-
Confidence            44444322111 1222112 2223   4455666653  469999999987      455554    478888877776 


Q ss_pred             CCCcccEEEEeee
Q 047130          799 LPGRYSVLVVQQQ  811 (815)
Q Consensus       799 ~~~~~SvLvvqq~  811 (815)
                        ++.+||||...
T Consensus       150 --~~~pVlvv~~~  160 (162)
T 1mjh_A          150 --SNKPVLVVKRK  160 (162)
T ss_dssp             --CCSCEEEECCC
T ss_pred             --CCCCEEEEeCC
Confidence              56799999754

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=98.34  E-value=1.6e-06  Score=81.19  Aligned_cols=126  Identities=17%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             ceEEEEecCCcc--HHHHHHHHHHHhhCCCeEEEEEEeeecCccc--------c-cc---chhhhhHHHHHHHhcccCCC
Q 047130          666 FRVAMIFLGGSD--DREALTLAKRMSQNTSINLTVFRFIVKTDEM--------I-ST---NWEKVLDSEVLKEVKPENNF  731 (815)
Q Consensus       666 ~~I~~~f~gg~D--dreAL~~a~rma~~~~v~ltvl~~~~~~~~~--------~-~~---~~~~~~d~~~l~~~~~~~~~  731 (815)
                      ++|+++++|.++  .+.|+++|.++|+..+++++++|+.++....        . .+   +..++.. +.++++..+...
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~   80 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSE-TQLKEIAKKFSI   80 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHH-HHHHHHHTTSCC
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHH-HHHHHHHHHcCC
Confidence            689999999999  9999999999999999999999998652210        0 00   1111111 233343333211


Q ss_pred             -CCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          732 -NQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       732 -~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                       ...+.+.-..=+-.+++.+++++.  ++||++||+| +      .|+.+|    -+|-..+-+...   ++.+||||
T Consensus        81 ~~~~v~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~-~------~~~~~~----~~Gs~~~~v~~~---~~~pVlvv  142 (143)
T 3fdx_A           81 PEDRMHFHVAEGSPKDKILALAKSL--PADLVIIASH-R------PDITTY----LLGSNAAAVVRH---AECSVLVV  142 (143)
T ss_dssp             CGGGEEEEEEESCHHHHHHHHHHHT--TCSEEEEESS-C------TTCCSC----SSCHHHHHHHHH---CSSEEEEE
T ss_pred             CCCceEEEEEecChHHHHHHHHHHh--CCCEEEEeCC-C------CCCeee----eeccHHHHHHHh---CCCCEEEe
Confidence             112222111111133455555553  5699999999 4      344443    477777777766   66789987

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=98.32  E-value=1.5e-06  Score=84.09  Aligned_cols=133  Identities=17%  Similarity=0.125  Sum_probs=80.0

Q ss_pred             CCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEE--EeeecCcc-cc----cc---chhhhhHHHHHHHhcccCCCC
Q 047130          663 GSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVF--RFIVKTDE-MI----ST---NWEKVLDSEVLKEVKPENNFN  732 (815)
Q Consensus       663 ~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl--~~~~~~~~-~~----~~---~~~~~~d~~~l~~~~~~~~~~  732 (815)
                      ...++|+++++|.+..+.|+++|.++|+ .+++++++  ++.++... ..    .+   +..++..++.++++.......
T Consensus        15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   93 (163)
T 1tq8_A           15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNA   93 (163)
T ss_dssp             CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTT
T ss_pred             ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3467999999999999999999999999 99999999  88754221 00    00   101111223444443322111


Q ss_pred             CCEE-EEEEEecC--cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130          733 QRVK-YVVEMVNE--GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ  809 (815)
Q Consensus       733 ~~v~-y~e~~V~~--g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  809 (815)
                       .+. +.......  .+++.+++++  .++||++||++++      .++.+|    -+|-+.+-+...   ++.+||||.
T Consensus        94 -gv~~v~~~v~~G~~~~~I~~~a~~--~~~DLIV~G~~g~------~~~~~~----~lGSva~~vl~~---a~~PVlvV~  157 (163)
T 1tq8_A           94 -GAKNVEERPIVGAPVDALVNLADE--EKADLLVVGNVGL------STIAGR----LLGSVPANVSRR---AKVDVLIVH  157 (163)
T ss_dssp             -TCCEEEEEEECSSHHHHHHHHHHH--TTCSEEEEECCCC------CSHHHH----HTBBHHHHHHHH---TTCEEEEEC
T ss_pred             -CCCeEEEEEecCCHHHHHHHHHHh--cCCCEEEECCCCC------Ccccce----eeccHHHHHHHh---CCCCEEEEe
Confidence             111 22122221  2345555555  4469999999987      455443    478777777776   567999997


Q ss_pred             eec
Q 047130          810 QQQ  812 (815)
Q Consensus       810 q~~  812 (815)
                      ...
T Consensus       158 ~~~  160 (163)
T 1tq8_A          158 TTE  160 (163)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            654

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=98.30  E-value=1.8e-06  Score=83.75  Aligned_cols=131  Identities=14%  Similarity=0.068  Sum_probs=81.8

Q ss_pred             CcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc---------------cccch---hhhhHHHHHHHh
Q 047130          664 SSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM---------------ISTNW---EKVLDSEVLKEV  725 (815)
Q Consensus       664 ~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~---------------~~~~~---~~~~d~~~l~~~  725 (815)
                      ..++|+++++|.++.+.|+++|.++|+..+++++++|+..+....               +.++.   .++..++.++++
T Consensus         4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (170)
T 2dum_A            4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK   83 (170)
T ss_dssp             CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999999999998652210               00011   111122344444


Q ss_pred             cccCC--CCCCEEEEEEEecC---cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCC
Q 047130          726 KPENN--FNQRVKYVVEMVNE---GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLP  800 (815)
Q Consensus       726 ~~~~~--~~~~v~y~e~~V~~---g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~  800 (815)
                      .....  +. .+.+ +..+..   .+++.+++++.  ++||+|||+|++      .++.++    -+|-+-+-+...   
T Consensus        84 ~~~~~~~g~-~~~~-~~~~~~g~~~~~I~~~a~~~--~~DlIV~G~~g~------~~~~~~----~~Gsv~~~vl~~---  146 (170)
T 2dum_A           84 AEEVKRAFR-AKNV-RTIIRFGIPWDEIVKVAEEE--NVSLIILPSRGK------LSLSHE----FLGSTVMRVLRK---  146 (170)
T ss_dssp             HHHHHHHTT-CSEE-EEEEEEECHHHHHHHHHHHT--TCSEEEEESCCC------CC--TT----CCCHHHHHHHHH---
T ss_pred             HHHHHHcCC-ceee-eeEEecCChHHHHHHHHHHc--CCCEEEECCCCC------Cccccc----eechHHHHHHHh---
Confidence            33211  11 1221 111222   34456666653  469999999987      455444    478777777766   


Q ss_pred             CcccEEEEeee
Q 047130          801 GRYSVLVVQQQ  811 (815)
Q Consensus       801 ~~~SvLvvqq~  811 (815)
                      ++.+||||...
T Consensus       147 ~~~PVlvv~~~  157 (170)
T 2dum_A          147 TKKPVLIIKEV  157 (170)
T ss_dssp             CSSCEEEECCC
T ss_pred             CCCCEEEEccC
Confidence            56799999754

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=98.30  E-value=1.7e-06  Score=82.64  Aligned_cols=129  Identities=17%  Similarity=0.162  Sum_probs=80.2

Q ss_pred             CCcceEEEEec--CCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc-------cchhhhhHHHHHHHhcccCC--C
Q 047130          663 GSSFRVAMIFL--GGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS-------TNWEKVLDSEVLKEVKPENN--F  731 (815)
Q Consensus       663 ~~~~~I~~~f~--gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~-------~~~~~~~d~~~l~~~~~~~~--~  731 (815)
                      ...++|+++++  |.++.+.|+++|.++|+..+++++++|+.++......       .+..++..++.++++.....  +
T Consensus        13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g   92 (156)
T 3fg9_A           13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRG   92 (156)
T ss_dssp             CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34689999999  9999999999999999999999999999865321100       01111122244444433221  1


Q ss_pred             CCCEEEEEEEec---CcHHHHHH-HHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEE
Q 047130          732 NQRVKYVVEMVN---EGQETLAK-IQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLV  807 (815)
Q Consensus       732 ~~~v~y~e~~V~---~g~~~~~~-i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLv  807 (815)
                      .+.+.+  ....   -.+++.++ +++.  ++||++||+|++      .++. +    -+|-.-+-+...   ++.+|||
T Consensus        93 ~~~~~~--~v~~~g~~~~~I~~~~a~~~--~~DlIV~G~~g~------~~~~-~----~~Gs~~~~vl~~---a~~PVlv  154 (156)
T 3fg9_A           93 VNQVEP--LVYEGGDVDDVILEQVIPEF--KPDLLVTGADTE------FPHS-K----IAGAIGPRLARK---APISVIV  154 (156)
T ss_dssp             CSSEEE--EEEECSCHHHHHHHTHHHHH--CCSEEEEETTCC------CTTS-S----SCSCHHHHHHHH---CSSEEEE
T ss_pred             CCceEE--EEEeCCCHHHHHHHHHHHhc--CCCEEEECCCCC------Cccc-e----eecchHHHHHHh---CCCCEEE
Confidence            112222  2222   12334454 4443  459999999987      4552 2    378888877776   6679999


Q ss_pred             Ee
Q 047130          808 VQ  809 (815)
Q Consensus       808 vq  809 (815)
                      |.
T Consensus       155 V~  156 (156)
T 3fg9_A          155 VR  156 (156)
T ss_dssp             EC
T ss_pred             eC
Confidence            73

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=98.23  E-value=1.4e-06  Score=91.21  Aligned_cols=113  Identities=10%  Similarity=-0.041  Sum_probs=79.8

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW  574 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  574 (815)
                      -|||+|+|+++....+++.+..++.  ..+..++++|+.+..+         +           .++..+.+.++.+.  
T Consensus       155 ~~ilv~~d~s~~~~~al~~a~~la~--~~~a~l~ll~v~~~~~---------~-----------~~~~l~~~~~~l~~--  210 (268)
T 3ab8_A          155 EGALLGYDASESAVRALHALAPLAR--ALGLGVRVVSVHEDPA---------R-----------AEAWALEAEAYLRD--  210 (268)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHH--HHTCCEEEEEECSSHH---------H-----------HHHHHHHHHHHHHH--
T ss_pred             CEEEEEECCCHHHHHHHHHHHHhhh--cCCCEEEEEEEcCcHH---------H-----------HHHHHHHHHHHHHH--
Confidence            4899999999999999999888873  3456799999975210         0           01222223333222  


Q ss_pred             cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      .+++++..+.-   .+..+.|.+.|+++  ||||||.    ++.+.+.      +++.++|++++||||.++
T Consensus       211 ~~~~~~~~~~~---g~~~~~i~~~a~~~--dliV~G~----~~~~~~~------Gs~~~~vl~~~~~pvlvv  267 (268)
T 3ab8_A          211 HGVEASALVLG---GDAADHLLRLQGPG--DLLALGA----PVRRLVF------GSTAERVIRNAQGPVLTA  267 (268)
T ss_dssp             TTCCEEEEEEC---SCHHHHHHHHCCTT--EEEEEEC----CCSCCSS------CCHHHHHHHHCSSCEEEE
T ss_pred             cCCceEEEEeC---CChHHHHHHHHHhC--CEEEECC----cccccEe------ccHHHHHHhcCCCCEEEe
Confidence            34566665543   48999999999988  9999998    4445554      444559999999999886

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=98.20  E-value=4.2e-06  Score=78.21  Aligned_cols=125  Identities=13%  Similarity=0.057  Sum_probs=78.3

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec-Cc-ccc---------ccchhhhhHHHHHHHhcccCCCCC
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK-TD-EMI---------STNWEKVLDSEVLKEVKPENNFNQ  733 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~-~~-~~~---------~~~~~~~~d~~~l~~~~~~~~~~~  733 (815)
                      .++|+++++|.++++.|+++|.++|+..+++++++++.++ .. ...         .++.+++ .++.++++..+. +.+
T Consensus         2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~   79 (141)
T 1jmv_A            2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTE-TQKALLDLAESV-DYP   79 (141)
T ss_dssp             CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCH-HHHHHHHHHHHS-SSC
T ss_pred             CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHH-HHHHHHHHHHHc-CCC
Confidence            4699999999999999999999999999999999999832 11 100         0011111 124444444332 111


Q ss_pred             --CEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEeee
Q 047130          734 --RVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQ  811 (815)
Q Consensus       734 --~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~  811 (815)
                        .....+-..  .+++.+++++.+  +||++||++ +      .++.      .+|-..+-+...   ++.+||||...
T Consensus        80 ~~~~~~~~g~~--~~~I~~~a~~~~--~dliV~G~~-~------~~~~------~lgs~~~~vl~~---~~~pVlvv~~~  139 (141)
T 1jmv_A           80 ISEKLSGSGDL--GQVLSDAIEQYD--VDLLVTGHH-Q------DFWS------KLMSSTRQVMNT---IKIDMLVVPLR  139 (141)
T ss_dssp             CCCEEEEEECH--HHHHHHHHHHTT--CCEEEEEEC-C------CCHH------HHHHHHHHHHTT---CCSEEEEEECC
T ss_pred             ceEEEEecCCH--HHHHHHHHHhcC--CCEEEEeCC-C------chhh------hhcchHHHHHhc---CCCCEEEeeCC
Confidence              111111111  344666666644  599999998 6      3432      256666666665   56799999754

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=98.00  E-value=2.8e-05  Score=75.64  Aligned_cols=132  Identities=11%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             CcceEEEEecCCc---------cHHHHHHHHHHHh-hC--CCeEEEEEEeeecCc--cc-------cccch------hhh
Q 047130          664 SSFRVAMIFLGGS---------DDREALTLAKRMS-QN--TSINLTVFRFIVKTD--EM-------ISTNW------EKV  716 (815)
Q Consensus       664 ~~~~I~~~f~gg~---------DdreAL~~a~rma-~~--~~v~ltvl~~~~~~~--~~-------~~~~~------~~~  716 (815)
                      ..++|+++++|.+         ..+.|+++|.+++ +.  .+++++++|+..+..  ..       ..++.      .++
T Consensus         4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (175)
T 2gm3_A            4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA   83 (175)
T ss_dssp             -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred             CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence            3579999999999         8899999999986 54  699999999974321  10       00000      011


Q ss_pred             hHHHHHHHhcccCCCCCCEEEEEEEecC--cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhh
Q 047130          717 LDSEVLKEVKPENNFNQRVKYVVEMVNE--GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCL  794 (815)
Q Consensus       717 ~d~~~l~~~~~~~~~~~~v~y~e~~V~~--g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~l  794 (815)
                      ..++.++++...... ..+.+.-.....  .+++.+++++.+  +||+|||+|++      .++.+|    -+|-+-+-+
T Consensus        84 ~~~~~l~~~~~~~~~-~g~~~~~~v~~G~~~~~I~~~a~~~~--~DLIVmG~~g~------~~~~~~----~~Gsva~~v  150 (175)
T 2gm3_A           84 KGLHLLEFFVNKCHE-IGVGCEAWIKTGDPKDVICQEVKRVR--PDFLVVGSRGL------GRFQKV----FVGTVSAFC  150 (175)
T ss_dssp             HHHHHHHHHHHHHHH-HTCEEEEEEEESCHHHHHHHHHHHHC--CSEEEEEECCC------C------------CHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCceEEEEecCCHHHHHHHHHHHhC--CCEEEEeCCCC------Chhhhh----hcCchHHHH
Confidence            122445554432211 112222122221  244555566544  59999999987      455544    478777777


Q ss_pred             hcCCCCCcccEEEEeee
Q 047130          795 VTEDLPGRYSVLVVQQQ  811 (815)
Q Consensus       795 as~d~~~~~SvLvvqq~  811 (815)
                      ...   ++.+||||...
T Consensus       151 l~~---a~~pVlvv~~~  164 (175)
T 2gm3_A          151 VKH---AECPVMTIKRN  164 (175)
T ss_dssp             HHH---CSSCEEEEECC
T ss_pred             HhC---CCCCEEEEcCC
Confidence            776   56799999754

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=97.83  E-value=2.5e-05  Score=72.62  Aligned_cols=39  Identities=18%  Similarity=0.144  Sum_probs=37.1

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEee-e
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFI-V  703 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~-~  703 (815)
                      .++|+++++|.++.+.|+++|.++|+..+++++++++. +
T Consensus         4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~   43 (138)
T 1q77_A            4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED   43 (138)
T ss_dssp             CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred             ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence            57999999999999999999999999999999999998 5

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.45  E-value=0.071  Score=57.24  Aligned_cols=69  Identities=7%  Similarity=-0.031  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHhhh-hhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 047130          398 AKVATTMIPPLYCKVPKRDAFALALIMSTK-GIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKF  469 (815)
Q Consensus       398 ~K~i~~~l~~~~~~~~~~~~~~lgl~m~~k-G~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~  469 (815)
                      .-+..++..++.+|.+.+|+..+++..+.| ....+.++...+..   ++..--..++..+...++++.+..+
T Consensus       240 ~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~  309 (332)
T 3zux_A          240 IGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATY  309 (332)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777888999999999998855544 55666666554421   1222233344555555555555544

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}

Probab=90.15  E-value=4.4  Score=41.84  Aligned_cols=223  Identities=16%  Similarity=0.101  Sum_probs=127.4

Q ss_pred             CccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHH
Q 047130          492 SGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEE  571 (815)
Q Consensus       492 ~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  571 (815)
                      +-.-+|||++..|..-.+++.++..+...   ...+.+.++..  ....+.+               .++ .+++++|-+
T Consensus        18 nWrP~iLV~sg~p~~~~~li~la~~lt~~---~G~ltv~~i~p--~~~~~~l---------------~~q-l~~l~~~l~   76 (294)
T 3g40_A           18 TWKANLLVPVEDPRELMGTFDFLRDITYP---KGSVKLLGLAG--NTDKENL---------------LSQ-LPSISEGFQ   76 (294)
T ss_dssp             -CCCEEEEEESCHHHHHHHHHHHHHHHTT---TCEEEEEECC-----CTTCH---------------HHH-HHHHHHHHH
T ss_pred             CCCCcEEEecCCchhhhhHHHHHHHhccC---ceeEEEEEEcc--CCCccHH---------------HHH-HHHHHHHHH
Confidence            56678999999999999999999999854   35677777742  2111100               122 255566655


Q ss_pred             hcCcceEEEEEEEecCCCChhHHHHHHHHhc-----CCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          572 KNWGTACVYPFTAISPPKLMHEDVCMLALDK-----LASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~-----~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      +  .++..  ++++-.-.+.++++..+.+..     +.+.|++|+..+..       ...+++.+.++. .++--.|.++
T Consensus        77 ~--r~v~a--~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~-~~~~~nVlil  144 (294)
T 3g40_A           77 E--EGVFS--SWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKA-SMYRMGVLLF  144 (294)
T ss_dssp             H--TTCEE--EEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHH-HHTTCEEEEE
T ss_pred             h--CCcee--EEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHH-HHhCceEEEE
Confidence            4  34433  333333357889999888776     56899999854422       223577777665 4446777777


Q ss_pred             eccCCcccccccccccCCcceEEEEec--------CC--ccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhh
Q 047130          647 IDRGRIGRFISSELSLGSSFRVAMIFL--------GG--SDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKV  716 (815)
Q Consensus       647 vdrg~~~~~~~~~~~~~~~~~I~~~f~--------gg--~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~  716 (815)
                      -+...  .+      ....++|=+=.-        ||  .+-.-++-+|-.+.++.++++.+..+++.  +...++.++.
T Consensus       145 ~~~~~--~~------fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d--e~a~~~a~~~  214 (294)
T 3g40_A          145 SKHPQ--AG------LGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT--AIQAQAAENF  214 (294)
T ss_dssp             ECCTT--TT------TTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS--HHHHHHHHHH
T ss_pred             ecCCc--cC------CCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC--HHHHHHHHHH
Confidence            54322  11      111344444311        22  24456888888888888999999999854  1111233334


Q ss_pred             hHHHHHHHhcccCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCC
Q 047130          717 LDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDN  769 (815)
Q Consensus       717 ~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~  769 (815)
                      ++ ++++..|...     ..+  . |. + +..+++++- .+=||+++|-...
T Consensus       215 l~-~Lv~~~Ri~a-----~~~--v-v~-~-~F~~il~~s-~~ADL~flGl~~~  255 (294)
T 3g40_A          215 LQ-SLAELARIPN-----VKM--Q-VL-R-ENPIKSSKL-PFASLHIFSLDPN  255 (294)
T ss_dssp             HH-HHHHHHTCCS-----CEE--E-EE-S-SCTTTSSSC-CCCSEEEEECCSS
T ss_pred             HH-HHHHHhcCCc-----eEE--E-ec-C-chHHHHhhC-cCCCEEEEcCCCC
Confidence            44 4555555321     222  1 21 1 234455553 5569999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	815
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.43
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.37
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	99.23
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.16
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	99.16
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	99.13
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.59
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.53
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	98.37
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.19
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.19
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	97.39

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=3.9e-13  Score=127.98  Aligned_cols=143  Identities=16%  Similarity=0.125  Sum_probs=100.5

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccc-c-ccC--------CcccchHHHHH
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQK-K-TVS--------NRSYSENVILS  565 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~-~-~~~--------~~~~~~~i~~a  565 (815)
                      |||+|+|++++...+++.+..++  +..+.+++++|+++................ . ...        .....++..+.
T Consensus         5 ~ILvavD~s~~s~~al~~a~~la--~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           5 KILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHHHH--HhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999  557889999999987653221110000000 0 000        01112333344


Q ss_pred             HHHHHHhcC-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130          566 FKLFEEKNW-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG  644 (815)
Q Consensus       566 f~~~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg  644 (815)
                      ++.+.+... .++.++..+..+   +..+.||+.|++.++|+||||.|++.+..+.+.      |++.++|++++||||.
T Consensus        83 l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~------GS~a~~vl~~s~~pVl  153 (160)
T d1mjha_          83 MENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILL------GSVTENVIKKSNKPVL  153 (160)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSS------CHHHHHHHHHCCSCEE
T ss_pred             HHHHHHHHHhcCCeEEEEEEec---cHHHHHhhhhhccccceEEeccCCCCccccccc------CcHHHHHHhcCCCCEE
Confidence            444433222 567888888777   899999999999999999999999988877764      4555699999999999


Q ss_pred             EEecc
Q 047130          645 ILIDR  649 (815)
Q Consensus       645 Ilvdr  649 (815)
                      |++.+
T Consensus       154 vV~~~  158 (160)
T d1mjha_         154 VVKRK  158 (160)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            98655

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=99.37  E-value=2.6e-13  Score=125.36  Aligned_cols=133  Identities=12%  Similarity=0.008  Sum_probs=93.8

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG  575 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  575 (815)
                      |||+|+|+++++..+++.+..++  +..+.+++++|+++-+..........      .......++..+.++++.+... 
T Consensus         3 ~Ilv~~D~s~~s~~a~~~a~~~a--~~~~~~l~ll~V~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~-   73 (135)
T d2z3va1           3 TILLAYDGSEHARRAAEVAKAEA--EAHGARLIVVHAYEPVPDYLGEPFFE------EALRRRLERAEGVLEEARALTG-   73 (135)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEECCCCTTCCTTHHH------HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEECCCHHHHHHHHHHHHHH--HHcCCEEEEEEEecCCccccccchhH------HHHHHHHHHHHHHHHHHHHhcC-
Confidence            79999999999999999999998  44678999999998443211110000      0111234555566666655422 


Q ss_pred             ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130          576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL  646 (815)
Q Consensus       576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl  646 (815)
                      ....+....-   .+..+.||+.|+++++|+||||+|++.+..+.+.      |++.+++++++||||.++
T Consensus        74 ~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~------Gs~~~~ll~~~~~pVlvV  135 (135)
T d2z3va1          74 VPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGSLFL------GSQSQRVVAEAPCPVLLV  135 (135)
T ss_dssp             CCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEESSCSSSCBCSSC------BHHHHHHHHHCSSCEEEE
T ss_pred             CCeEEEEEEc---CChHHHHHHHhhhhheeeEEeccCCCCccccccc------CcHHHHHHHhCCCCEEeC
Confidence            1122222222   4889999999999999999999999988777664      444559999999999874

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.23  E-value=8.4e-12  Score=115.54  Aligned_cols=137  Identities=9%  Similarity=0.013  Sum_probs=96.0

Q ss_pred             ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130          495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW  574 (815)
Q Consensus       495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  574 (815)
                      -|||+|+|+++....+++.+..++  +..+..++++|+++.+....+-..+...   ........++..+.+++..++..
T Consensus         3 k~ILv~vD~s~~s~~al~~A~~~a--~~~~~~v~~lhv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   77 (140)
T d1jmva_           3 KHILVAVDLSEESPILLKKAVGIA--KRHDAKLSIIHVDVNFSDLYTGLIDVNM---SSMQDRISTETQKALLDLAESVD   77 (140)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEECCGGGCCCCEEHHH---HHHTTCCCCHHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHH--HHcCCeEEEEEEeeecccccccccccch---HHHHHHHHHHHHHHHHHHHHhcC
Confidence            389999999999999999999998  4567899999999865432221111100   01112233556666676665532


Q ss_pred             cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130          575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR  649 (815)
Q Consensus       575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr  649 (815)
                      .. ........   .+..+.|++.|++.++|+||||.|++++.         .++++.+.+++++||||.|+..+
T Consensus        78 ~~-~~~~~~~~---~~~~~~I~~~a~~~~~dliV~G~~~~~~~---------~lgs~~~~li~~~~~pVliVp~~  139 (140)
T d1jmva_          78 YP-ISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHHQDFWS---------KLMSSTRQVMNTIKIDMLVVPLR  139 (140)
T ss_dssp             SC-CCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEECCCCHH---------HHHHHHHHHHTTCCSEEEEEECC
T ss_pred             Cc-eEEEEEEe---cCHHHHHHHhhhhchhhEEEeccCCCCCC---------CcccHHHHHHhccCCCEEEEecC
Confidence            11 22222322   38999999999999999999999987543         26778889999999999998643

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=4.5e-11  Score=111.46  Aligned_cols=139  Identities=13%  Similarity=0.018  Sum_probs=89.1

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG  575 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  575 (815)
                      |||+|+|+++.+..+++.+..++  +.....++++|..+....... .................++..+.+++...+. +
T Consensus         7 ~ILv~vD~s~~s~~al~~A~~la--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~   82 (147)
T d1tq8a_           7 TVVVGTDGSDSSMRAVDRAAQIA--GADAKLIIASAYLPQHEDARA-ADILKDESYKVTGTAPIYEILHDAKERAHNA-G   82 (147)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHH--TTTSEEEEEEECCC---------------------CCTHHHHHHHHHHHHHTT-T
T ss_pred             EEEEEECCCHHHHHHHHHHHHHH--hcCCCEEEEEEEecccccccc-cccchhhhHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            89999999999999999999998  334455554444432222111 1111100111122233455555555554432 3


Q ss_pred             ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130          576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI  647 (815)
Q Consensus       576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv  647 (815)
                      ...++..+..+   +..+.|++.|+++++|+||+|.|++.+..+.+.|+.+      ++|+++|||||.|++
T Consensus        83 ~~~~~~~~~~G---~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l~Gs~~------~~ll~~~~~pVlvV~  145 (147)
T d1tq8a_          83 AKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVP------ANVSRRAKVDVLIVH  145 (147)
T ss_dssp             CCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHH------HHHHHHTTCEEEEEC
T ss_pred             CCcEEEEEEec---ChHHHHHHhhhccceeEEEecCCCCCcccccccccHH------HHHHHhCCCCEEEEe
Confidence            34577777655   8999999999999999999999998776665655554      499999999998873

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.16  E-value=7.1e-11  Score=113.43  Aligned_cols=147  Identities=8%  Similarity=0.029  Sum_probs=87.6

Q ss_pred             ceeEEeeecCC---------ChHHHHHHHHHhC-CCCCCCceEEEEEeeeccCCCccchhhhh--ccccccCCcccchHH
Q 047130          495 LRILACIYRPD---------NIPAIIKFLQASC-PKRGSLVTVYVLHLIDLRGRAAPLFISHK--MQKKTVSNRSYSENV  562 (815)
Q Consensus       495 lrILv~i~~~~---------~~~~~i~la~~~~-~~~~~~~~v~~Lhlvel~~r~~~~~~~~~--~~~~~~~~~~~~~~i  562 (815)
                      -||+||+|+|+         .+..+++.+.... ....+...++++|+.+......+......  ............++.
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG   81 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred             CEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHHH
Confidence            38999999987         5788888875543 33345678999998875443211110000  000000111112222


Q ss_pred             HHHHHHHHHhcC-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCC
Q 047130          563 ILSFKLFEEKNW-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPC  641 (815)
Q Consensus       563 ~~af~~~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApC  641 (815)
                      .+.++.+.+... .++.++..+..+   +..+.||+.|++.++|+||||.|++.++.+.+      +|++.++|++++||
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------lGSv~~~vi~~~~c  152 (171)
T d2gm3a1          82 LHLLEFFVNKCHEIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAFCVKHAEC  152 (171)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEeC---ChHHHHHHHHhhcCCcEEEeccCCccccccCc------cCcHHHHHHhCCCC
Confidence            333333333221 457788877766   89999999999999999999999998776655      45556699999999


Q ss_pred             ceEEEeccC
Q 047130          642 SVGILIDRG  650 (815)
Q Consensus       642 sVgIlvdrg  650 (815)
                      ||.|+....
T Consensus       153 pVlvV~~~~  161 (171)
T d2gm3a1         153 PVMTIKRNA  161 (171)
T ss_dssp             CEEEEECCG
T ss_pred             CEEEEeCCC
Confidence            999986443

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.13  E-value=1.9e-11  Score=112.62  Aligned_cols=132  Identities=11%  Similarity=0.012  Sum_probs=90.1

Q ss_pred             eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC-
Q 047130          496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW-  574 (815)
Q Consensus       496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~-  574 (815)
                      |||+|+|+++++..+++.+..++  ++.+.+++++|++|.........................++..+.++++.++.. 
T Consensus         6 ~ILv~~D~S~~s~~al~~A~~~a--~~~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~   83 (138)
T d1q77a_           6 VLLVLTDAYSDCEKAITYAVNFS--EKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLTG   83 (138)
T ss_dssp             EEEEEESTTCCCHHHHHHHHHHH--TTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEEeCCHHHHHHHHHHHHhh--hhccceEEEEEEccCcccccccccccccchhhhhhhhhhhhccccchhhcccccc
Confidence            79999999999999999999999  557899999999984322111111111000000011122334445555543322 


Q ss_pred             cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130          575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI  647 (815)
Q Consensus       575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv  647 (815)
                      ....++..+..+   +..+.|++.|+++++||||||+|++..+               ++++..+.||+.|++
T Consensus        84 ~~~~~~~~v~~G---~~~~~I~~~a~~~~~DLIV~Gs~g~~~l---------------~r~l~g~~~~~livk  138 (138)
T d1q77a_          84 STEIPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPSAYL---------------CKVIDGLNLASLIVK  138 (138)
T ss_dssp             CCCCCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCGGGT---------------HHHHHHSSSEEEECC
T ss_pred             cceeEEEeeecc---hhHHHHHHhhhhccCCEEEEecCCCcHH---------------HHHhcCCCCCEEEeC
Confidence            445666666655   8999999999999999999999997543               288999999998863

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=5.8e-08  Score=88.41  Aligned_cols=125  Identities=18%  Similarity=0.242  Sum_probs=84.7

Q ss_pred             ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc-----c---chhhhhHHHHHHHhcccCCC-CCCEE
Q 047130          666 FRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS-----T---NWEKVLDSEVLKEVKPENNF-NQRVK  736 (815)
Q Consensus       666 ~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~-----~---~~~~~~d~~~l~~~~~~~~~-~~~v~  736 (815)
                      +||+++++|.+..+.|+.+|.+||+..+++++++++.++......     +   +..++.. +.+++++..... .....
T Consensus         2 k~Ilv~~D~s~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~   80 (135)
T d2z3va1           2 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAE-GVLEEARALTGVPKEDAL   80 (135)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTTCCTTHHHHHHHHHHHHHH-HHHHHHHHHHCCCGGGEE
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccccccchhHHHHHHHHHHHH-HHHHHHHHhcCCCeEEEE
Confidence            699999999999999999999999999999999999864221111     0   1111222 455555543211 12222


Q ss_pred             EEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130          737 YVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV  808 (815)
Q Consensus       737 y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv  808 (815)
                      ..+..+  ++++.+++++.+  .||++||+|++      +++.+|    =+|-..+-+...   ++.+||||
T Consensus        81 ~~~g~~--~~~I~~~a~~~~--~dliV~G~~~~------~~~~~~----~~Gs~~~~ll~~---~~~pVlvV  135 (135)
T d2z3va1          81 LLEGVP--AEAILQAARAEK--ADLIVMGTRGL------GALGSL----FLGSQSQRVVAE---APCPVLLV  135 (135)
T ss_dssp             EEESCH--HHHHHHHHHHTT--CSEEEEESSCS------SSCBCS----SCBHHHHHHHHH---CSSCEEEE
T ss_pred             EEcCCh--HHHHHHHhhhhh--eeeEEeccCCC------Cccccc----ccCcHHHHHHHh---CCCCEEeC
Confidence            222222  445777777754  59999999987      566665    478888888877   66799987

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.53  E-value=1.7e-07  Score=87.97  Aligned_cols=131  Identities=17%  Similarity=0.178  Sum_probs=85.9

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc----------------cchhhhh-------HHHH
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS----------------TNWEKVL-------DSEV  721 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~----------------~~~~~~~-------d~~~  721 (815)
                      .+||+++.+|++.+++|+.+|..+|+..+++|+++|+.++......                ++.+++.       -++.
T Consensus         3 ~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           3 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999765221100                0111111       1133


Q ss_pred             HHHhcccCCCCCCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCC
Q 047130          722 LKEVKPENNFNQRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED  798 (815)
Q Consensus       722 l~~~~~~~~~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d  798 (815)
                      ++++..+... ..+.+... +..|   .++.+++++.+  +||++||+|++      .++.+|    -+|-..+-++.. 
T Consensus        83 l~~~~~~~~~-~gv~~~~~-~~~G~~~~~I~~~a~~~~--~dliV~G~~~~------~~~~~~----~~GS~a~~vl~~-  147 (160)
T d1mjha_          83 MENIKKELED-VGFKVKDI-IVVGIPHEEIVKIAEDEG--VDIIIMGSHGK------TNLKEI----LLGSVTENVIKK-  147 (160)
T ss_dssp             HHHHHHHHHH-TTCEEEEE-EEEECHHHHHHHHHHHTT--CSEEEEESCCS------SCCTTC----SSCHHHHHHHHH-
T ss_pred             HHHHHHHHHh-cCCeEEEE-EEeccHHHHHhhhhhccc--cceEEeccCCC------Cccccc----ccCcHHHHHHhc-
Confidence            3333332211 22333333 2233   34666666644  59999999987      566665    568788888777 


Q ss_pred             CCCcccEEEEeeec
Q 047130          799 LPGRYSVLVVQQQQ  812 (815)
Q Consensus       799 ~~~~~SvLvvqq~~  812 (815)
                        ++.+||||+.+.
T Consensus       148 --s~~pVlvV~~~~  159 (160)
T d1mjha_         148 --SNKPVLVVKRKN  159 (160)
T ss_dssp             --CCSCEEEECCCC
T ss_pred             --CCCCEEEEcCCC
Confidence              678999998764

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.37  E-value=5.2e-07  Score=82.28  Aligned_cols=125  Identities=12%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc-----------cchhhhhHHHHHHHhcccCCCC-
Q 047130          665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS-----------TNWEKVLDSEVLKEVKPENNFN-  732 (815)
Q Consensus       665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~-----------~~~~~~~d~~~l~~~~~~~~~~-  732 (815)
                      .+||+++.+|.++++.|+++|.++|+..+++++++++.++......           +..+++.. +.+++...+.... 
T Consensus         2 yk~ILv~vD~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (140)
T d1jmva_           2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQ-KALLDLAESVDYPI   80 (140)
T ss_dssp             CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHH-HHHHHHHHHSSSCC
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEEEeeecccccccccccchHHHHHHHHHHHH-HHHHHHHHhcCCce
Confidence            4799999999999999999999999999999999999764221100           11112222 3333333322111 


Q ss_pred             CCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEee
Q 047130          733 QRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQ  810 (815)
Q Consensus       733 ~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq  810 (815)
                      ......+..+  ..++.+.+++.+.  ||+|||+|++      .|+       .||-.-|.+...   ++..||||..
T Consensus        81 ~~~~~~~~~~--~~~I~~~a~~~~~--dliV~G~~~~------~~~-------~lgs~~~~li~~---~~~pVliVp~  138 (140)
T d1jmva_          81 SEKLSGSGDL--GQVLSDAIEQYDV--DLLVTGHHQD------FWS-------KLMSSTRQVMNT---IKIDMLVVPL  138 (140)
T ss_dssp             CCEEEEEECH--HHHHHHHHHHTTC--CEEEEEECCC------CHH-------HHHHHHHHHHTT---CCSEEEEEEC
T ss_pred             EEEEEEecCH--HHHHHHhhhhchh--hEEEeccCCC------CCC-------CcccHHHHHHhc---cCCCEEEEec
Confidence            1112222222  4457778887555  9999999876      232       378888888887   7789999864

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=2.4e-06  Score=78.37  Aligned_cols=130  Identities=17%  Similarity=0.130  Sum_probs=78.8

Q ss_pred             CcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcc---------ccccchhhhhHHHHHHHhcccCCCCCC
Q 047130          664 SSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDE---------MISTNWEKVLDSEVLKEVKPENNFNQR  734 (815)
Q Consensus       664 ~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~---------~~~~~~~~~~d~~~l~~~~~~~~~~~~  734 (815)
                      ..++|+++.+|.++.+.|+++|.++|+..+..+++.++.++...         ....+.+++..++.+++++......+.
T Consensus         4 ~yk~ILv~vD~s~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (147)
T d1tq8a_           4 AYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA   83 (147)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHhcCCCEEEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999999988888887776543111         000111222223444444432212122


Q ss_pred             EEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130          735 VKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ  809 (815)
Q Consensus       735 v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  809 (815)
                      . ..+..+..|   +++.+.+++  .++||+++|++++      .++.++    =+|-..+-++-.   ++.+||||.
T Consensus        84 ~-~~~~~~~~G~~~~~i~~~a~~--~~~dlIv~g~~~~------~~~~~~----l~Gs~~~~ll~~---~~~pVlvV~  145 (147)
T d1tq8a_          84 K-NVEERPIVGAPVDALVNLADE--EKADLLVVGNVGL------STIAGR----LLGSVPANVSRR---AKVDVLIVH  145 (147)
T ss_dssp             C-EEEEEEECSSHHHHHHHHHHH--TTCSEEEEECCCC------CSHHHH----HTBBHHHHHHHH---TTCEEEEEC
T ss_pred             C-cEEEEEEecChHHHHHHhhhc--cceeEEEecCCCC------Cccccc----ccccHHHHHHHh---CCCCEEEEe
Confidence            2 223344444   444555555  4469999999986      344333    467777777766   667999985

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.19  E-value=1.4e-06  Score=79.05  Aligned_cols=41  Identities=17%  Similarity=0.158  Sum_probs=38.4

Q ss_pred             CcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130          664 SSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK  704 (815)
Q Consensus       664 ~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~  704 (815)
                      ..++|+++.+|.++.+.|+++|.++|+..+++++++|++.+
T Consensus         3 ~mk~ILv~~D~S~~s~~al~~A~~~a~~~~a~l~llhv~~~   43 (138)
T d1q77a_           3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED   43 (138)
T ss_dssp             CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred             CCCEEEEEEeCCHHHHHHHHHHHHhhhhccceEEEEEEccC
Confidence            46899999999999999999999999999999999999853

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.39  E-value=0.0003  Score=65.78  Aligned_cols=129  Identities=12%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             ceEEEEecCCc---------cHHHHHHHHHHHhhCC---CeEEEEEEeeecCccc---------------cccchhhhhH
Q 047130          666 FRVAMIFLGGS---------DDREALTLAKRMSQNT---SINLTVFRFIVKTDEM---------------ISTNWEKVLD  718 (815)
Q Consensus       666 ~~I~~~f~gg~---------DdreAL~~a~rma~~~---~v~ltvl~~~~~~~~~---------------~~~~~~~~~d  718 (815)
                      .||+++.+|..         ..+.|+++|...+...   ...|+++|+..+....               +..+..++..
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG   81 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred             CEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHHH
Confidence            58889888874         5799999998887544   4589999987541110               0011112223


Q ss_pred             HHHHHHhcccCCCCCCEEEEEEEec--CcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhc
Q 047130          719 SEVLKEVKPENNFNQRVKYVVEMVN--EGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVT  796 (815)
Q Consensus       719 ~~~l~~~~~~~~~~~~v~y~e~~V~--~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las  796 (815)
                      ++++++++....+. .+.+.-..++  -.+++.+++++.+.  ||++||+|++      .++..+    =+|-.-+.+..
T Consensus        82 ~~~l~~~~~~~~~~-~~~~~~~v~~G~~~~~I~~~a~~~~~--dlIV~G~~g~------~~~~~~----~lGSv~~~vi~  148 (171)
T d2gm3a1          82 LHLLEFFVNKCHEI-GVGCEAWIKTGDPKDVICQEVKRVRP--DFLVVGSRGL------GRFQKV----FVGTVSAFCVK  148 (171)
T ss_dssp             HHHHHHHHHHHHHH-TCEEEEEEEESCHHHHHHHHHHHHCC--SEEEEEECCC------C------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCceEEEEEeCChHHHHHHHHhhcCC--cEEEeccCCc------cccccC----ccCcHHHHHHh
Confidence            35555555433211 1222222222  24456666776555  9999999976      344332    37888888888


Q ss_pred             CCCCCcccEEEEee
Q 047130          797 EDLPGRYSVLVVQQ  810 (815)
Q Consensus       797 ~d~~~~~SvLvvqq  810 (815)
                      .   ++.+||||.-
T Consensus       149 ~---~~cpVlvV~~  159 (171)
T d2gm3a1         149 H---AECPVMTIKR  159 (171)
T ss_dssp             H---CSSCEEEEEC
T ss_pred             C---CCCCEEEEeC
Confidence            7   7789999964