Citrus Sinensis ID: 047158

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MLDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLEEKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLFAKNP
cEEEccHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccccccEEEEEEccccHHcccccccEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHccccEEEccccEEEccHHHHHHHHHHHcccc
cEEEccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHEEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHcHHHHEEcEEEEEcccccEcHHHHHHHHHHHHHEccc
MLDMESIDRGLNMMSSRLLHRRVFVVldnldhidqlkplagenkwfgsgsRIIITNRNEHLLKVFEvdgvctvprlclgksfqlfswhafrkdkppqrFMKLSRELLRcaeglpleeklkripneeILNKLRVSFdvlnddeeknVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLFAKNP
MLDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDqlkplagenkwfgSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCaeglpleeklkripneeilnKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMkeklfaknp
MLDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLEEKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLFAKNP
***************SRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLEEKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIR***********
MLDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLEEKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLFAKN*
********RGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLEEKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLFAKNP
MLDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLEEKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLFAK**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLEEKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLFAKNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
Q40392 1144 TMV resistance protein N N/A no 0.943 0.174 0.380 1e-32
Q9FL92 1372 Probable WRKY transcripti no no 0.933 0.144 0.330 2e-24
O23530 1301 Protein SUPPRESSOR OF npr no no 0.896 0.146 0.310 3e-21
O82500 1095 Putative disease resistan no no 0.943 0.182 0.305 2e-20
Q9FH83 1288 Probable WRKY transcripti no no 0.900 0.148 0.32 4e-20
Q9SZ67 1895 Probable WRKY transcripti no no 0.905 0.101 0.304 4e-18
Q9FKN7 1613 Protein DA1-related 4 OS= no no 0.896 0.117 0.289 1e-17
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 Back     alignment and function desciption
 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 136/226 (60%), Gaps = 26/226 (11%)

Query: 10  GLNMMSSRLLHRRVFVVLDNLDHIDQ-LKPLAGENKWFGSGSRIIITNRNEHLLKVFEVD 68
           G + M+SRL  ++V +VLD++D+ D  L+ LAG+  WFG+GSRIIIT R++HL++  + D
Sbjct: 283 GKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIE--KND 340

Query: 69  GVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE------------ 116
            +  V  L   +S QLF  HAF K+ P + F KLS E++  A+GLPL             
Sbjct: 341 IIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLR 400

Query: 117 --------EKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQG 168
                   E +K      I++KL++S+D L + +++ +F+DIA    G +KDY+L+IL+ 
Sbjct: 401 LTEWKSAIEHMKNNSYSGIIDKLKISYDGL-EPKQQEMFLDIACFLRGEEKDYILQILES 459

Query: 169 CGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKL--FAKNP 212
           C   +E    +L  + L+ I E N+++MHDLI+DM + +  F K+P
Sbjct: 460 CHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQKDP 505
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 Back     alignment and function description
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 Back     alignment and function description
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 Back     alignment and function description
>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 Back     alignment and function description
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
225349365267 NBS-containing resistance-like protein [ 0.938 0.745 0.474 9e-52
225349357267 NBS-containing resistance-like protein [ 0.938 0.745 0.470 2e-51
255567754 673 ATP binding protein, putative [Ricinus c 0.971 0.306 0.464 1e-50
357468659 1160 TIR-NBS-LRR RCT1-like resistance protein 0.985 0.180 0.408 9e-48
357469193 524 TIR-NBS-LRR RCT1 resistance protein [Med 0.952 0.385 0.461 2e-47
225349363267 NBS-containing resistance-like protein [ 0.938 0.745 0.447 9e-47
193584702 1125 TIR-NBS-LRR RCT1-like resistance protein 0.985 0.185 0.413 1e-46
357468645 936 TIR-NBS-LRR RCT1 resistance protein [Med 0.985 0.223 0.408 2e-46
193584700 1098 TIR-NBS-LRR RCT1 resistance protein [Med 0.985 0.190 0.408 2e-46
357469133 1890 NBS-containing resistance-like protein [ 0.971 0.108 0.443 7e-46
>gi|225349365|gb|ACN87586.1| NBS-containing resistance-like protein [Corylus avellana] Back     alignment and taxonomy information
 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 142/219 (64%), Gaps = 20/219 (9%)

Query: 2   LDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHL 61
           + + +IDRG+ M+  RL  RRV V+LD++D ++QLK + G  +WFG GSRIIIT R E L
Sbjct: 49  IKVNNIDRGMTMIQERLRGRRVLVILDDVDQLEQLKIMVGSREWFGPGSRIIITTREEQL 108

Query: 62  LKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE----- 116
           LKV EVD V     +C  +S +LFSWHAFR   P + +M LSR ++  + GLPL      
Sbjct: 109 LKVLEVDIVYKAEEMCENESLELFSWHAFRNSHPTEDYMDLSRSVVAYSRGLPLALEVLG 168

Query: 117 ---------------EKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDY 161
                          EKLKRIPN+++  KLR+SFD L+D  +K++F+DI+  F+GMDK+Y
Sbjct: 169 SFLFSRSMQEWKSALEKLKRIPNDQVQTKLRISFDGLSDSTQKDIFLDISCFFIGMDKNY 228

Query: 162 VLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLI 200
           V++IL  C F  EI   VL QRCL+ ID+ N+L MHDL+
Sbjct: 229 VIQILDDCNFFPEIGISVLIQRCLLSIDDRNKLIMHDLL 267

Source: Corylus avellana

Species: Corylus avellana

Genus: Corylus

Family: Betulaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225349357|gb|ACN87582.1| NBS-containing resistance-like protein [Corylus avellana] Back     alignment and taxonomy information
>gi|255567754|ref|XP_002524855.1| ATP binding protein, putative [Ricinus communis] gi|223535818|gb|EEF37479.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357468659|ref|XP_003604614.1| TIR-NBS-LRR RCT1-like resistance protein [Medicago truncatula] gi|355505669|gb|AES86811.1| TIR-NBS-LRR RCT1-like resistance protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357469193|ref|XP_003604881.1| TIR-NBS-LRR RCT1 resistance protein [Medicago truncatula] gi|355505936|gb|AES87078.1| TIR-NBS-LRR RCT1 resistance protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225349363|gb|ACN87585.1| NBS-containing resistance-like protein [Corylus avellana] Back     alignment and taxonomy information
>gi|193584702|gb|ACF19651.1| TIR-NBS-LRR RCT1-like resistance protein [Medicago sativa] Back     alignment and taxonomy information
>gi|357468645|ref|XP_003604607.1| TIR-NBS-LRR RCT1 resistance protein [Medicago truncatula] gi|355505662|gb|AES86804.1| TIR-NBS-LRR RCT1 resistance protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|193584700|gb|ACF19650.1| TIR-NBS-LRR RCT1 resistance protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357469133|ref|XP_003604851.1| NBS-containing resistance-like protein [Medicago truncatula] gi|355505906|gb|AES87048.1| NBS-containing resistance-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2167457 1191 AT5G36930 [Arabidopsis thalian 0.504 0.089 0.425 1.5e-35
UNIPROTKB|Q40392 1144 N "TMV resistance protein N" [ 0.509 0.094 0.450 1.4e-32
TAIR|locus:2205824 1384 AT1G27170 [Arabidopsis thalian 0.533 0.081 0.336 4.4e-31
TAIR|locus:2175991 1294 AT5G17680 [Arabidopsis thalian 0.490 0.080 0.419 1.1e-27
TAIR|locus:2151491 1123 AT5G46450 [Arabidopsis thalian 0.5 0.094 0.401 2.3e-23
TAIR|locus:2081790 1253 AT3G51560 [Arabidopsis thalian 0.415 0.070 0.377 4.4e-23
TAIR|locus:2122199 1607 AT4G36140 [Arabidopsis thalian 0.415 0.054 0.422 5.9e-23
TAIR|locus:2153368 697 AT5G45210 [Arabidopsis thalian 0.400 0.121 0.406 2.6e-22
TAIR|locus:2158485 1288 RRS1 "RESISTANT TO RALSTONIA S 0.415 0.068 0.4 5.5e-21
TAIR|locus:2136108 1095 AT4G11170 [Arabidopsis thalian 0.542 0.105 0.344 5.8e-21
TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 217 (81.4 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 46/108 (42%), Positives = 66/108 (61%)

Query:     9 RGLN-MMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEV 67
             +GL+  +  R   +RV +V+D++D + QL   A +   FG GSRIIIT RN HLLK    
Sbjct:   279 KGLDHAVKERFRSKRVLLVVDDVDDVHQLNSAAIDRDCFGHGSRIIITTRNMHLLKQLRA 338

Query:    68 DGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPL 115
             +G  +   L   +S +LFSWHAFR  +PP+ F++ S E++    GLPL
Sbjct:   339 EGSYSPKELDGDESLELFSWHAFRTSEPPKEFLQHSEEVVTYCAGLPL 386
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0007165 "signal transduction" evidence=IEA
GO:0043531 "ADP binding" evidence=IEA
UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)] Back     alignment and assigned GO terms
TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081790 AT3G51560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122199 AT4G36140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153368 AT5G45210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158485 RRS1 "RESISTANT TO RALSTONIA SOLANACEARUM 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002411001
SubName- Full=Chromosome undetermined scaffold_131, whole genome shotgun sequence; (964 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
PLN03210 1153 PLN03210, PLN03210, Resistant to P 9e-28
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 9e-07
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information 
 Score =  109 bits (274), Expect = 9e-28
 Identities = 73/216 (33%), Positives = 111/216 (51%), Gaps = 27/216 (12%)

Query: 11  LNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGV 70
           L  M  RL HR+V + +D+LD  D L  LAG+ +WFGSGSRII+  +++H L+   +D +
Sbjct: 286 LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHI 345

Query: 71  CTVPRLCLGK---SFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLEEK--------- 118
             V   CL     + ++F   AF+K+ PP  FM+L+ E+   A  LPL            
Sbjct: 346 YEV---CLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR 402

Query: 119 --------LKRIPNE---EILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQ 167
                   L R+ N    +I   LRVS+D LN+ ++K +F  IA LF G   + +  +L 
Sbjct: 403 DKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLA 462

Query: 168 GCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDM 203
                  I    L  + LI + ED  ++MH L+++M
Sbjct: 463 NSDLDVNIGLKNLVDKSLIHVREDI-VEMHSLLQEM 497

syringae 6; Provisional. Length = 1153
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 100.0
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 99.96
PRK04841 903 transcriptional regulator MalT; Provisional 99.09
COG3903414 Predicted ATPase [General function prediction only 98.15
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 98.09
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 98.02
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 97.57
PF05729166 NACHT: NACHT domain 97.31
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 97.09
PRK00411394 cdc6 cell division control protein 6; Reviewed 96.26
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 96.21
PRK06893229 DNA replication initiation factor; Validated 96.19
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 95.78
PRK07471365 DNA polymerase III subunit delta'; Validated 95.72
COG3899 849 Predicted ATPase [General function prediction only 95.44
PRK05564313 DNA polymerase III subunit delta'; Validated 95.07
PF13173128 AAA_14: AAA domain 94.96
PRK09112351 DNA polymerase III subunit delta'; Validated 94.86
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 94.23
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 94.02
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 94.02
PRK13342 413 recombination factor protein RarA; Reviewed 93.82
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 93.74
COG2256 436 MGS1 ATPase related to the helicase subunit of the 93.43
PRK05707328 DNA polymerase III subunit delta'; Validated 93.41
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 92.98
TIGR02928365 orc1/cdc6 family replication initiation protein. M 92.9
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 92.85
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 92.59
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 92.37
PRK08769319 DNA polymerase III subunit delta'; Validated 92.22
PRK07940394 DNA polymerase III subunit delta'; Validated 91.58
PRK09087226 hypothetical protein; Validated 91.58
PRK08727233 hypothetical protein; Validated 91.39
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 91.33
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 90.68
PLN03025319 replication factor C subunit; Provisional 90.23
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 90.21
PRK12402337 replication factor C small subunit 2; Reviewed 89.99
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 89.92
PRK13341 725 recombination factor protein RarA/unknown domain f 89.49
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 89.33
PRK06964342 DNA polymerase III subunit delta'; Validated 89.31
PRK06090319 DNA polymerase III subunit delta'; Validated 89.2
PRK06871325 DNA polymerase III subunit delta'; Validated 89.19
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 89.09
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 89.01
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 88.04
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 87.95
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 87.88
PRK08084235 DNA replication initiation factor; Provisional 87.83
COG1373 398 Predicted ATPase (AAA+ superfamily) [General funct 87.78
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 87.68
PRK06305 451 DNA polymerase III subunits gamma and tau; Validat 87.65
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 87.55
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 86.84
PRK07399314 DNA polymerase III subunit delta'; Validated 86.34
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 86.15
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 86.14
PRK07993334 DNA polymerase III subunit delta'; Validated 86.13
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 86.09
PRK00440319 rfc replication factor C small subunit; Reviewed 86.03
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 85.96
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 85.61
PRK14962 472 DNA polymerase III subunits gamma and tau; Provisi 85.58
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 85.47
PRK06620214 hypothetical protein; Validated 85.29
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 85.15
PRK04132846 replication factor C small subunit; Provisional 84.52
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 84.24
PF14516331 AAA_35: AAA-like domain 82.96
PF02463220 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: 82.95
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 82.58
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 82.15
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 81.51
PRK14087450 dnaA chromosomal replication initiation protein; P 81.17
PRK04195 482 replication factor C large subunit; Provisional 80.86
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 80.1
PRK05642234 DNA replication initiation factor; Validated 80.1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-37  Score=274.62  Aligned_cols=202  Identities=24%  Similarity=0.300  Sum_probs=177.2

Q ss_pred             hHHHHHHHHHHhccCeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhh-cCCCceEeCCCCChHHHHHHH
Q 047158            7 IDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKV-FEVDGVCTVPRLCLGKSFQLF   85 (212)
Q Consensus         7 ~~~~~~~l~~~L~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~-~~~~~~~~l~~l~~~~a~~Ll   85 (212)
                      .++....+.+.|++|||+|||||||+..+|+.+..++|...+||+|++|||++.++.. ++....++++.|+.+|||+||
T Consensus       247 ~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF  326 (889)
T KOG4658|consen  247 EDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLF  326 (889)
T ss_pred             HHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHH
Confidence            3678889999999999999999999999999999999988889999999999999998 777788999999999999999


Q ss_pred             HHhhcCCC-CCChhHHHHHHHHHHHhCCCCch---------------------hhhccC-----C--chhHHHHHHHhhc
Q 047158           86 SWHAFRKD-KPPQRFMKLSRELLRCAEGLPLE---------------------EKLKRI-----P--NEEILNKLRVSFD  136 (212)
Q Consensus        86 ~~~~~~~~-~~~~~~~~~~~~i~~~c~glPLa---------------------~~l~~~-----~--~~~v~~~l~~s~~  136 (212)
                      .+.++... ...+..+.+|++++++|+|+|||                     +.+...     +  ...+..++..||+
T Consensus       327 ~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd  406 (889)
T KOG4658|consen  327 QKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYD  406 (889)
T ss_pred             HHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHh
Confidence            99998763 33345899999999999999999                     111111     1  2568899999999


Q ss_pred             CCCCchhhhHHhhhhccCCC--CCHHHHHHhhhhcCCcc------------hhhHHHHhhccCceecCC----CcEEecH
Q 047158          137 VLNDDEEKNVFMDIAHLFVG--MDKDYVLKILQGCGFSS------------EIVFFVLTQRCLIVIDED----NRLKMHD  198 (212)
Q Consensus       137 ~L~~~~~~~~~~~la~f~~~--~~~~~l~~~~~~~~~~~------------~~~l~~L~~~sll~~~~~----~~~~mH~  198 (212)
                      .| +++.|.||+|||.||++  |..+.++.+|+++|++.            ..++++|++++|+.....    ..|.|||
T Consensus       407 ~L-~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHD  485 (889)
T KOG4658|consen  407 NL-PEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHD  485 (889)
T ss_pred             hh-hHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeH
Confidence            99 79999999999999997  99999999999999663            347999999999998653    3499999


Q ss_pred             HHHHHHHHHHh
Q 047158          199 LIRDMKEKLFA  209 (212)
Q Consensus       199 lv~~~a~~~~~  209 (212)
                      +||++|.+++.
T Consensus       486 vvRe~al~ias  496 (889)
T KOG4658|consen  486 VVREMALWIAS  496 (889)
T ss_pred             HHHHHHHHHhc
Confidence            99999999987

>PLN03210 Resistant to P Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>COG3903 Predicted ATPase [General function prediction only] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3899 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-18
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 2e-10
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 3e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 80.7 bits (198), Expect = 7e-18
 Identities = 37/231 (16%), Positives = 85/231 (36%), Gaps = 41/231 (17%)

Query: 2   LDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHL 61
           L + SI   L  +     +    +VL N+ +             F    +I++T R +  
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-------FNLSCKILLTTRFK-- 275

Query: 62  LKVFEVDGVCTVPRLCL---------GKSFQLFS-WHAFRKDK-PPQ------RFMKLSR 104
            +V +     T   + L          +   L   +   R    P +      R + +  
Sbjct: 276 -QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 105 ELLRCAEGLPLEEKLKRIPNEEILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKD---- 160
           E +R  +GL   +  K +  +++   +  S +VL   E + +F  ++ +F          
Sbjct: 335 ESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VF---PPSAHIP 388

Query: 161 -YVLKILQGCGFSSEIVFFV--LTQRCLIVID-EDNRLKMHDLIRDMKEKL 207
             +L ++      S+++  V  L +  L+    +++ + +  +  ++K KL
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 100.0
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.97
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.95
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 99.95
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 98.92
2fna_A357 Conserved hypothetical protein; structural genomic 98.86
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 98.54
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 97.67
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 97.66
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 97.57
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 97.34
2v1u_A387 Cell division control protein 6 homolog; DNA repli 96.95
2chg_A226 Replication factor C small subunit; DNA-binding pr 96.63
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 96.56
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 95.86
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 94.67
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 94.44
2chq_A319 Replication factor C small subunit; DNA-binding pr 94.03
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 93.84
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 89.61
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 89.41
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 89.03
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 88.8
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 88.16
3bos_A242 Putative DNA replication factor; P-loop containing 86.27
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 83.74
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 83.69
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 83.16
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 82.06
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 81.03
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 80.97
2gno_A305 DNA polymerase III, gamma subunit-related protein; 80.74
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-34  Score=250.15  Aligned_cols=194  Identities=11%  Similarity=0.093  Sum_probs=152.1

Q ss_pred             hHHHHHHHHHHhccC-eEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcC-CCceEeCCCCChHHHHHH
Q 047158            7 IDRGLNMMSSRLLHR-RVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFE-VDGVCTVPRLCLGKSFQL   84 (212)
Q Consensus         7 ~~~~~~~l~~~L~~k-r~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~-~~~~~~l~~l~~~~a~~L   84 (212)
                      .+.+...+++.|+++ ||||||||||+.+++ .+. .    .+||+||||||++.++..++ ...+|++++|+.++|++|
T Consensus       228 ~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-~----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L  301 (549)
T 2a5y_B          228 SVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-Q----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDF  301 (549)
T ss_dssp             HHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-H----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-c----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHH
Confidence            455689999999996 999999999998876 222 1    26999999999999988775 346799999999999999


Q ss_pred             HHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hhhccC---------------CchhHHHHHHHhhcCCCCchhh
Q 047158           85 FSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EKLKRI---------------PNEEILNKLRVSFDVLNDDEEK  144 (212)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~l~~~---------------~~~~v~~~l~~s~~~L~~~~~~  144 (212)
                      |.+.+++... .+.+.+++.+|+++|+|+|||     ..+...               +...+..++.+||+.| |+..+
T Consensus       302 f~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L-~~~lk  379 (549)
T 2a5y_B          302 LEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSL-AMALQ  379 (549)
T ss_dssp             HHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSH-HHHHH
T ss_pred             HHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccc-cHHHH
Confidence            9999876543 357788899999999999999     111111               2234556778899999 99999


Q ss_pred             hHHh-----------hhhccCCCCCHHHHHHhhhhc--CCcch-----------hhHHHHhhccCceecCC---CcEEec
Q 047158          145 NVFM-----------DIAHLFVGMDKDYVLKILQGC--GFSSE-----------IVFFVLTQRCLIVIDED---NRLKMH  197 (212)
Q Consensus       145 ~~~~-----------~la~f~~~~~~~~l~~~~~~~--~~~~~-----------~~l~~L~~~sll~~~~~---~~~~mH  197 (212)
                      .||+           +||+||++.+..  +.+|.++  |++..           .++++|+++||++....   ++|+||
T Consensus       380 ~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mH  457 (549)
T 2a5y_B          380 RCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKID  457 (549)
T ss_dssp             HHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECC
T ss_pred             HHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeC
Confidence            9998           999999874433  6789888  55531           27999999999997643   359999


Q ss_pred             HHHHHHHHHHHhc
Q 047158          198 DLIRDMKEKLFAK  210 (212)
Q Consensus       198 ~lv~~~a~~~~~~  210 (212)
                      |+||+||++++.+
T Consensus       458 dlv~~~a~~~~~~  470 (549)
T 2a5y_B          458 HIIHMFLKHVVDA  470 (549)
T ss_dssp             HHHHHHHHTTSCT
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999977654
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 212
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 6e-09
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.5 bits (125), Expect = 6e-09
 Identities = 14/158 (8%), Positives = 42/158 (26%), Gaps = 28/158 (17%)

Query: 2   LDMESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHL 61
             + S+     + ++ +       V D++   + ++             R ++T R+  +
Sbjct: 116 EHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRW------AQELRLRCLVTTRDVEI 169

Query: 62  LKVFEVDG-VCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPL----- 115
                       V  L + + +     +        ++   +  + +  + G P      
Sbjct: 170 SNAASQTCEFIEVTSLEIDECYDFLEAYGM-PMPVGEKEEDVLNKTIELSSGNPATLMMF 228

Query: 116 ---------------EEKLKRIPNEEILNKLRVSFDVL 138
                            KL+      +      S+  L
Sbjct: 229 FKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSL 266

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 99.9
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 93.85
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 93.53
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 92.06
d1mkma175 Transcriptional regulator IclR, N-terminal domain 86.91
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 86.27
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 84.41
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 81.13
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=8.5e-25  Score=172.66  Aligned_cols=133  Identities=10%  Similarity=0.087  Sum_probs=108.5

Q ss_pred             HHHHHHHHhccCeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCC-ceEeCCCCChHHHHHHHHHh
Q 047158           10 GLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVD-GVCTVPRLCLGKSFQLFSWH   88 (212)
Q Consensus        10 ~~~~l~~~L~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~-~~~~l~~l~~~~a~~Ll~~~   88 (212)
                      ....+.+.+.++|+|+||||||+.++|+.+..      .||+||||||++.++..+... +.|++++|+.+||++||...
T Consensus       124 ~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  197 (277)
T d2a5yb3         124 KRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAY  197 (277)
T ss_dssp             HHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHH
Confidence            34567888999999999999999999987643      489999999999998876544 67999999999999999998


Q ss_pred             hcCCCCCChhHHHHHHHHHHHhCCCCch--------------------hhhccCCchhHHHHHHHhhcCCCCchhhhHHh
Q 047158           89 AFRKDKPPQRFMKLSRELLRCAEGLPLE--------------------EKLKRIPNEEILNKLRVSFDVLNDDEEKNVFM  148 (212)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~c~glPLa--------------------~~l~~~~~~~v~~~l~~s~~~L~~~~~~~~~~  148 (212)
                      ++..... +..++.+++|++.|+|+|||                    +.+.......+..++.+||+.| |++.|.||.
T Consensus       198 ~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L-~~~lk~c~~  275 (277)
T d2a5yb3         198 GMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSL-AMALQRCVE  275 (277)
T ss_dssp             SCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSH-HHHHHHHHH
T ss_pred             hCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence            8765443 35678899999999999999                    2222223345778888999999 999999997


Q ss_pred             hh
Q 047158          149 DI  150 (212)
Q Consensus       149 ~l  150 (212)
                      ++
T Consensus       276 ~l  277 (277)
T d2a5yb3         276 VL  277 (277)
T ss_dssp             TS
T ss_pred             hC
Confidence            64
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure