Citrus Sinensis ID: 047191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MVPAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVIIS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHccccHHHHHHHHccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHccccccccEEEEEEEccccccccHHHHHHHHHHHHcccccccEEEcccccEEEEEEccccccccccccccccccEEEEEEEEcccccHHHHcccccccccEEEEEEEccccccEEEEEEcccccEEEEEEccccccccccccEEEEEcccEEEEEEEEcccccEEEEcccccEEEEEEEEEccccccccccHHHHccccccEEEEEEEccEEEEEEccccccccccccccEEEEEEccccccHHHHHHcccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHEEEEEEEEEcccccEEEccEEEEEEEEEEEEccccccccccHHHEEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccccEEEEEEEccccEEEEEEEccccccccccccEEEEEcccEEEEEEEcccccccEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHcccEEEEcccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHccccccEEEEcccccc
Coil and Loop (DISEMBL)
mvpayrinalpdsVLCHIlsylptknvvATSILARRWKLVWTSLQKLYfddrqsrrlpgmmgdpmpgfEDFIERVltgtqpmnITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFllkvpaggtcfpnvkiltmqlespdnilteklfcscpsleeLSIQAylndegpttkfvISSSTLKQCTLWVETEGEMFTQAEYKVritapslerLHIMSDIFGKFVVHDLNSLTDVILDIVYgewsrvdpnrsIQLLQQLNNTTSLTVSYGVLCALDhayhkwfpalSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVIIS
Flexible Loop (DISEMBL)
mvpayrinalpdsVLCHILSYLPTKNVVATSILARRWKLVWTSLQKlyfddrqsrrlpGMMGDPMPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSssvhlqslvlrkviis
Low Complexity Region (SEG)
MVPAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIqllqqlnnttsltVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPvilsssvhlqslvlRKVIIS
Disordered region (IsUnstruct)
****YRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDR*************PGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVII*
Disordered Region (DISOPRED)
MVPAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVII*
Disordered Region (DISEMBL)
MVPAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVIIS
Disordered Region (DISPRO)
****YRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVIIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q8H1R7	419	F-box/FBD/LRR-repeat prot	yes	no	0.888	0.723	0.282	1e-16
Q9FZ53	434	Putative F-box/FBD/LRR-re	no	no	0.862	0.677	0.292	2e-16
Q84RK6	459	F-box/LRR-repeat protein	no	no	0.920	0.684	0.257	5e-15
Q9FZ52	449	F-box/FBD/LRR-repeat prot	no	no	0.917	0.697	0.259	8e-15
Q56XS8	456	F-box/FBD/LRR-repeat prot	no	no	0.953	0.712	0.268	1e-14
Q3E7K7	332	F-box protein At4g22280 O	no	no	0.912	0.936	0.266	1e-14
Q9SCQ5	427	Putative FBD-associated F	no	no	0.891	0.711	0.273	2e-14
Q94B46	468	F-box/LRR-repeat protein	no	no	0.917	0.668	0.273	3e-14
Q9FM89	422	F-box/FBD/LRR-repeat prot	no	no	0.885	0.715	0.271	3e-14
Q8GW80	484	F-box/LRR-repeat protein	no	no	0.956	0.673	0.257	4e-14

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 44/347 (12%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RI+ L D +L  ILS++P K+VVATS+L++RW+ +W  + +L +DD          GD  
Sbjct: 3   RISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYH------TGD-Y 55

Query: 66  PGFEDFIERVLTGTQPMNITIFFMH----CSKL-LGVMLG-----RLNYILTRITALSCL 115
             F  F+ R L       I    ++    C  + +G+ +G     RL  +   I   S  
Sbjct: 56  KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSND 115

Query: 116 CQI----ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLFCS 170
                   LY S ++E L+L++  LL VP+   C P++K+L ++ ++  D+     L   
Sbjct: 116 ASFSLPSSLYTSDTLETLRLINFVLLDVPS-SVCLPSLKVLHLKTVDYEDDASLPSLLFG 174

Query: 171 CPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERL 230
           CP+LEEL ++ +  D      FV+ S  L++ ++  +  G    Q +  V I  PSL+ L
Sbjct: 175 CPNLEELFVERHDQDLEMDVTFVVPS--LRRLSMIDKNYG----QCDRYV-IDVPSLKYL 227

Query: 231 HIMSD-IFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLC 289
           +I  D ++    + ++  L +  +DI  G   +    R++  ++QL+   SL+    V+C
Sbjct: 228 NITDDAVYDVRQIENMPELVEAHVDITQGVTHKF--LRALTSVRQLSLCLSLS---EVMC 282

Query: 290 ALDHAYHKWFPALSYLQHLEVAVGAIG-WAVLPVILSSSVHLQSLVL 335
                +       S L HL ++    G W +L  +L  S  LQSL L
Sbjct: 283 PSGIIF-------SQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKL 322

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ53|FDL4_ARATH Putative F-box/FBD/LRR-repeat protein At1g16940 OS=Arabidopsis thaliana GN=At1g16940 PE=4 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 155/352 (44%), Gaps = 58/352 (16%)

Query: 7   INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGM----MG 62
           IN LPDS+LC I   LPT+ VV TS++ RRW+ VW S             LPG+     G
Sbjct: 13  INQLPDSLLCEIFFNLPTEEVVKTSLICRRWRYVWQS-------------LPGLDLVING 59

Query: 63  DPMPGFEDFIERVLTGTQPMNITIFFMH-CSKLLGVMLGRLNYILTRITALSCLCQIELY 121
                  DF+ER +   +     + + H C  +  +M+   N I  +I  L  +     Y
Sbjct: 60  SKNYDKFDFLERFMFLQRVKLRYVGYGHNCRNMTSMMMN--NVIKHKIQHLD-VGSNRRY 116

Query: 122 ASPSVEV-------------LKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKL 167
               VE+             LKL    L K P      P +KI+ +Q +   D++  EKL
Sbjct: 117 VYDRVEIPPTIYTSCERLVFLKLHRANLPKSP-DSVSLPCLKIMDLQKINFVDSLDMEKL 175

Query: 168 FCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSL 227
              CP+LE L++      +      V S S L  C    ET G + TQ    V +  P L
Sbjct: 176 VSVCPALETLTMDKMYGAK------VSSQSLLSFCLTNNET-GYLKTQ----VVMQTPKL 224

Query: 228 ERLHIMSDIFGKFVVHDLNSLTDVILDIV--YGEWSRVDPNRSIQLLQQLNNTTSLTVSY 285
           + L +      + V++DL+S+  + LD V  +GE         + +L+ ++    LT+S+
Sbjct: 225 KYLKLNRQFIQRIVINDLSSIVMLNLDDVAYFGE-------TLLSILKLISCVRDLTISF 277

Query: 286 GVLCALDH-AYHKWFPALSYLQHLEVAVGAIG-WAVLPVILSSSVHLQSLVL 335
            +L    H +  K  P    L  L V   A+G W  L + L S  +L+SLV+
Sbjct: 278 DILQDYRHFSKSKSLPKFHKLSVLSVKDMAVGSWESLLIFLESCQNLKSLVM 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q84RK6|FBL36_ARATH F-box/LRR-repeat protein At2g29930 OS=Arabidopsis thaliana GN=At2g29930 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 161/357 (45%), Gaps = 43/357 (12%)

Query: 7   INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMP 66
           I++LPD +L  ILS   T     TS+L++RW+ +   +  L  +D               
Sbjct: 14  ISSLPDEILGKILSLFCTNRAACTSVLSKRWRNLLELVDNLDLNDAYGNH---------Q 64

Query: 67  GFEDFIERVLT-GTQPMNITIFFMHCS---------KLLGVMLGRLNYILTRITALSCLC 116
            F DF++R L   +    +  F ++C+           +  +  R    L   TA     
Sbjct: 65  YFCDFVDRTLALLSNSTTVKRFSLNCAFHNDASRVNSWIRTVFDRGFLDLHLETAHMHRI 124

Query: 117 QIELYASPSVEVLKLMSDFLL--KVPAGGTCFPNVKILTM-QLESPDNILTEKLFCSCPS 173
             E + S ++  L +   F    ++P G   FP +K L++  +E  D ++ +     CP 
Sbjct: 125 DTEFFTSNTLLELTICGGFYAEGRLPPGRVFFPALKSLSLVSVEFTDTLMYQNFISGCPV 184

Query: 174 LEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIM 233
           LEEL +      + P  K ++SS ++K+  ++ +   E+  +A YK     PSL  L   
Sbjct: 185 LEELFLHYDNETQCPAWKGLVSSPSIKRLNIY-DNPSELRYEA-YKCCFQIPSLVYLDYS 242

Query: 234 SDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSI-----QLLQQLNNTTSLTVS---- 284
           S +  ++ V DL SL +  L+I Y E   VD N  I      LL+ ++N  +L +S    
Sbjct: 243 SYVAKQYAV-DLVSLEEARLNIRYPE-RLVDQNEDIFGDVTDLLKGISNVKTLHLSSDSL 300

Query: 285 --YGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI 339
             + + C     +H     LS+    E     IGW V+P++L+ S +L++LV++ ++
Sbjct: 301 EVFHLCCDTMPVFHNLL-TLSFESDEE-----IGWQVVPLLLNKSPNLETLVIKSLV 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 151/358 (42%), Gaps = 45/358 (12%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RI+ LPDS+LC ILS L TK  V TS+L++RW+ +W  +  L  D   S   P    D +
Sbjct: 16  RISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLD---SNNFPD---DDV 69

Query: 66  PGFEDFIERVLTGTQPMNITIFFM------HCSKLLGVMLGRLNYILTRITALSCLCQIE 119
             F  F+ R L      ++  F +      H +      +  +  I  R+   +   +++
Sbjct: 70  --FVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAV--IKRRVCHFNVHNEVD 125

Query: 120 -----------LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILT-EKL 167
                      LY+   +  L+L     L  P   +  P VKI+ + +   D   T E L
Sbjct: 126 DDDELVKMPLSLYSCERLVNLQLYR-VALDHPESVS-LPCVKIMHLDMVKYDADSTLEIL 183

Query: 168 FCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSL 227
              CP LEEL+I    ND        + S +LK      + + E +    + V I AP L
Sbjct: 184 ISGCPVLEELTIVRDPNDSLEVV--CVRSQSLKS----FKIDSERYESQNHVVTIDAPRL 237

Query: 228 ERLHIMSDIFGKFVVHDLNSLT----DVILDIVYGEWSRVDPNRSIQLLQQ----LNNTT 279
           E +++       F++H++        DVI ++ Y +    D +  I +L +    L+  +
Sbjct: 238 EYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDPLEPDDSSKIAMLGKFLTGLSTVS 297

Query: 280 SLTVSYGVLCAL-DHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR 336
            + +S   L  + D+   +  P  S L  L        W +LP  L S  +L SLV+ 
Sbjct: 298 EMVISSDTLQVIHDYCKMEQLPQFSNLSRLHAYFEDTWWEMLPTFLESFPNLHSLVME 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XS8|FDL2_ARATH F-box/FBD/LRR-repeat protein At1g13780 OS=Arabidopsis thaliana GN=At1g13780 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 161/369 (43%), Gaps = 44/369 (11%)

Query: 1   MVPAY-RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPG 59
           ++P + RI+ LP+S++  IL +LPTK  V TS+L+ RWK +W ++  L   D   R  P 
Sbjct: 5   VMPGFDRISELPESLISQILLHLPTKASVKTSVLSTRWKNLWLNVPGL---DLNCRDFP- 60

Query: 60  MMGDPMPGFEDFIERVLTGTQPMNITIF--------FMHCSKLLGVMLGRLNYILTRIT- 110
              +      DFI+R L       +  F         +  S  +G  + R   +L   + 
Sbjct: 61  FQNNNEKLLIDFIDRFLQFNNESRLQKFKVDYSRDKIIKFSDRIGDAISRGIRVLDVESN 120

Query: 111 -----ALSCL-------CQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ--- 155
                A  C+         + LY+  ++  LKL    L     G    P +K + ++   
Sbjct: 121 TYYRDADDCIDYPCIEFMPLNLYSCKTLVSLKLSYSGLED--PGFVYLPCLKFMHLREVR 178

Query: 156 LESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQ 215
            +S   +  EKL   CP LEEL    YL+D+      V S S LK+ ++    +  +F +
Sbjct: 179 WDSSGTMNLEKLVSGCPVLEEL---IYLHDDKLVVTRVRSRS-LKRFSIPFRHKLSLFRR 234

Query: 216 AEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVY--GEWSRVDP------NR 267
                 I AP LE + + +D F + VV +L SL  + LDI +  G     DP      N 
Sbjct: 235 VTQTFEIDAPGLEYMSLKADHFDRIVVKNLTSLFMIDLDIKFIVGFGWMFDPEDLPKRNE 294

Query: 268 SIQLLQQLNNTTSLTVSYGVLCALD-HAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSS 326
               L  +++   + +S+  + ALD ++     P  + L  +E A  +     LP  L S
Sbjct: 295 IRDFLTGISSVRHMVISHNTVKALDLYSKVGLIPKFNNLSRVEAAFPSSLLQFLPAFLES 354

Query: 327 SVHLQSLVL 335
             +L+ L+L
Sbjct: 355 FPNLKHLIL 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E7K7|FB243_ARATH F-box protein At4g22280 OS=Arabidopsis thaliana GN=At4g22280 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 158/349 (45%), Gaps = 38/349 (10%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RIN L D ++CHILS L  K   +TS+L+ RW+ ++     L  DD++   + G  GD  
Sbjct: 3   RINGLSDDIICHILSLLSFKEATSTSVLSMRWRYLFAFRPNLCLDDQE---VGG--GD-- 55

Query: 66  PGFEDFIERVL--TGTQPM-------NITIFFMHCSK-LLGVMLGRLNYILTRITALSC- 114
             F DF++RVL  TG  P+        ++I   H ++ ++ V+   ++Y+   I +    
Sbjct: 56  -SFIDFVDRVLVVTGNFPIRRISIKCRMSIDTGHVTRWMVDVLEHGVSYLDIDIISEDDI 114

Query: 115 -LCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKIL---TMQLESPDNILTEKLFCS 170
               +E++   ++  LKL   F   VP      P++K L   ++   + D     +L  +
Sbjct: 115 GFVPLEIFTCKTLVELKLARGFYAMVP-DYVSLPSLKTLFLSSIWFCNRDCCPLGRLLSA 173

Query: 171 CPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERL 230
           CP LEEL+I           +  +SSSTLK+ T+        F    + + I  PSL  L
Sbjct: 174 CPVLEELTIIGGCWQHIEFCR-TVSSSTLKKLTI-----TSSFHYEYWGITIDTPSLAYL 227

Query: 231 HIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCA 290
                +   F   +L SL +  L +          +    L++ L N   L +S G    
Sbjct: 228 EYSDLVPRHFPFVNLESLVEAKLAL-----DLCSDSNPTNLIKGLRNVEVLELSSGYTSQ 282

Query: 291 LDHAYHKWFPALSYLQHLEVAVGAIG---WAVLPVILSSSVHLQSLVLR 336
           + + + +  P LS L  L +   +     W +LP++L  S  L++LV++
Sbjct: 283 ILYDFREAIPVLSKLFRLSIKSNSRHYYIWNLLPILLEKSPKLETLVIK 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 157/347 (45%), Gaps = 43/347 (12%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RI+ L D +L  I+S LPTK+VV T +L++RWK +W  + KL FDD +    P   G   
Sbjct: 3   RISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDD-EFELEPSYYG--- 58

Query: 66  PGFEDFIER--VLTGTQPMNITIFFMH--CSKLLGVMLGRLNYILTRITALSCLCQ---- 117
             F  ++++  VL   Q +    F +   CS        R+  +          C+    
Sbjct: 59  -RFLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYFR 117

Query: 118 --------IELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLF 168
                     LY    +EVLKL S  +L VP    CFP++K L +  +E        +L 
Sbjct: 118 EHRSIKLPKSLYTYEKLEVLKLASTVVLNVPI-DVCFPSLKSLHLVCVEYKTKKSHRRLL 176

Query: 169 CSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLE 228
             CP LEEL +    N       F +   TL+  ++ ++T GE++   ++   + AP+L+
Sbjct: 177 SGCPVLEELVLDKSYNS-FHVRSFYVEIPTLQSLSI-LDTSGELY--GDFTFVVNAPALK 232

Query: 229 RLHIMSDIFGKFVVHD-LNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGV 287
             + + D +G   + D +  + DV + ++Y      +P +   LL  L +   L++    
Sbjct: 233 YFNFV-DFYGDLCLRDNMPEVVDVNIKVIYR-----NPKK---LLGPLKSVKRLSLCLSP 283

Query: 288 LCALDHAYHKWFPALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSL 333
              L H + +++     L HLE+   A+  W +L  +L SS  LQ L
Sbjct: 284 STTL-HNHMEFYQ----LVHLELCGDALMWWDLLTWMLQSSPKLQVL 325

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana GN=At4g14096 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 168/362 (46%), Gaps = 49/362 (13%)

Query: 7   INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMP 66
           I++LP+++ CHILS+LPTK   +TS+L+++W+ ++  +  L  D+      P    +   
Sbjct: 10  ISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLN-PENETEVSS 68

Query: 67  GFEDFIERVLT--GTQPMNITIFFMHCSKLLGVMLGR----LNYILTR-ITALSCLCQI- 118
            F DF++RVL   G  P++   F +      GV   R    +N +L R ++ L     + 
Sbjct: 69  SFMDFVDRVLALQGNSPLH--KFSLKIGD--GVEPDRIIPWINNVLERGVSDLDLHVYME 124

Query: 119 -------ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ---LESPDNILTEKLF 168
                  E++ S ++  LKLM   LL+        P +K L +     E     LT KL 
Sbjct: 125 TEFVFPSEMFLSKTLVRLKLMLYPLLEFE--DVYLPKLKTLYIDSCYFEKYGIGLT-KLL 181

Query: 169 CSCPSLEELSIQAYLNDEGP--TTKFV-ISSSTLKQCTLWVETEGEMFTQAEYKVRITAP 225
             CP LE+L +     D+ P  T  F  +S  TLK+ T   +   E F ++   V I  P
Sbjct: 182 SGCPILEDLVL-----DDIPWCTWDFASVSVPTLKRLTFSTQVRDE-FPKS---VSIDTP 232

Query: 226 SLERLHIMSDIFGKFVVHDLNSLTDVILDIV-------YGEWSRVDPNRSIQLLQQLNNT 278
           +L  L     + GK+   + +SL +  +D+        YGE   V    +   + ++ N 
Sbjct: 233 NLVYLKFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMV--GNATDFIMRICNV 290

Query: 279 TSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK 337
            +L +S   L  L ++     P  + L HL +     +GW  LP +L +S +L++L+ + 
Sbjct: 291 KTLYLSSNTLQVLTYSCDA-IPIFNNLTHLTIESNPEVGWQSLPGLLKNSPNLETLIFQG 349

Query: 338 VI 339
           +I
Sbjct: 350 LI 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 163/354 (46%), Gaps = 52/354 (14%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           R++ LPD  L  ILS+LPTK+V+ TS+L++RW+ +WT + +L +D R       +  +  
Sbjct: 7   RLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLR-------LHDNTC 59

Query: 66  PGFEDFIERVL-----TGTQPMNITI--FFMHCSKLLGVMLGRLNYILTRITALSCLCQI 118
           P F  F++R L        + +NI I        K +GV +        R  ++S  C  
Sbjct: 60  PRFSQFVDRSLLLHKAPTLESLNIKIGSICFTAEKDVGVWVRIGVDRFVRELSVS-YCSG 118

Query: 119 E--------LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILT-MQLESPDNILTEKLFC 169
           E        L+   ++ VLKL  +  L+  +   CF ++K L  + ++  D+    ++  
Sbjct: 119 EEPIRLPKCLFTCSTLAVLKL-ENITLEDASCYVCFQSLKTLHLLDVKYLDDQSLPRIIS 177

Query: 170 SCPSLEELSIQAYLNDEGPTTKFV-ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLE 228
           SC SLE+L +Q      G   K V +++ +LK  TL +    + F   +    I  P L+
Sbjct: 178 SCSSLEDLVVQRC---PGDNVKVVTVTAPSLK--TLSLHKSSQAFEGDDDGFLIDTPKLK 232

Query: 229 RLHIMSDIFGKFV-VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGV 287
           R+ I  D +G F  + ++  + +  +D++Y    ++           L + TS+      
Sbjct: 233 RVDI-EDYWGGFCYIENMPEVVEANVDVIYKNTEKL-----------LGSITSVKRLALC 280

Query: 288 LCALDHAYHKWFPA---LSYLQHLEVAVGAIG-WAVLPVILSSSVHLQSLVLRK 337
           L   D AY    PA    S L HLE+   A   W +L  ++  S  L+ L LR+
Sbjct: 281 LITSDAAY----PAGTIFSQLVHLELCTCAPRWWDLLTRLIEDSPKLRVLKLRQ 330

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW80|FBL65_ARATH F-box/LRR-repeat protein At3g59210 OS=Arabidopsis thaliana GN=At3g59210 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 151/361 (41%), Gaps = 35/361 (9%)

Query: 7   INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGD-PM 65
           IN LPD++LC ILS L TK    TS+L++RW+ ++  +  L FD   S      M D   
Sbjct: 9   INCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFDVLPSLHPEVAMQDQDQ 68

Query: 66  PGFEDFIERVLTGTQPMNITIFFMHCSKLL---GVMLGRLNYILTRITALSCLCQIEL-- 120
             F DF++RVL      +I  F + C   +    V    LN +   ++ LS      L  
Sbjct: 69  TSFIDFVDRVLKLRGKDHINKFSLKCGDGIEDEDVFPWILNTLRHGVSDLSLHVSPSLVY 128

Query: 121 ------YASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ--LESPDNILTEKLFCSCP 172
                 +AS ++  LK+      +V     C P +K L +   +     I   KL   CP
Sbjct: 129 WLPSKVFASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFEEGKIGFAKLLSGCP 188

Query: 173 SLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHI 232
            LEELS+     D   +    +SS  LK+ TL+        ++    V    P++     
Sbjct: 189 VLEELSLLNLAWDRWDSCS--VSSKILKRLTLYCAHS----SRNPKSVSFDTPNVVYFEY 242

Query: 233 MSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDP-------------NRSIQLLQQLNNTT 279
             +I  K+   + +SL +  + I   +  + +                +  LL  + N  
Sbjct: 243 SDNIANKYPKVNFDSLVEASIGIRMTKVQKANARYVSDVDEETEMVGNATDLLMGICNVK 302

Query: 280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV 338
           +L +SY  L  L+    +  P  + L HL +     +GW  LP +L S  +L +LV + +
Sbjct: 303 TLYLSYDTLETLNLCC-QVIPVFNNLTHLTIESHPELGWESLPNLLKSCPNLGTLVFQGL 361

Query: 339 I 339
           +
Sbjct: 362 L 362

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
296086764	348	unnamed protein product [Vitis vinifera]	0.923	0.905	0.289	8e-21
147812093	607	hypothetical protein VITISV_040899 [Viti	0.941	0.528	0.280	1e-19
22328947	419	F-box/FBD/LRR-repeat protein [Arabidopsi	0.888	0.723	0.282	8e-15
15219960	434	F-box/RNI-like/FBD-like domains-containi	0.862	0.677	0.292	1e-14
297819758	426	F-box family protein [Arabidopsis lyrata	0.903	0.723	0.273	7e-14
296086770	411	unnamed protein product [Vitis vinifera]	0.862	0.715	0.266	1e-13
297844624	452	F-box family protein [Arabidopsis lyrata	0.926	0.699	0.265	2e-13
4539430	374	putative protein [Arabidopsis thaliana]	0.697	0.636	0.286	2e-13
297812929	457	hypothetical protein ARALYDRAFT_489554 [	0.958	0.715	0.266	3e-13
297844280	455	F16A14.1 [Arabidopsis lyrata subsp. lyra	0.917	0.687	0.255	3e-13

>gi|296086764|emb|CBI32913.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 166/349 (47%), Gaps = 34/349 (9%)

Query: 7   INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGM--MGDP 64
           I+ LPD +LCHILS+LPTK  V TSIL++RW+ +W S+  L FDD        +  + + 
Sbjct: 12  ISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELEER 71

Query: 65  MPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASP 124
           +  F++F++ VL  ++   I  F       LG     L+     +  +  +C+       
Sbjct: 72  IIMFQNFVDGVLRHSEVSCIKKF------RLGYRDNNLDNWGVELPPMFFICK------- 118

Query: 125 SVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLFCSCPSLEELSIQAYL 183
           ++ V+KL     L +P      P++K L ++ +E  D+   +KL   CP LEEL I+   
Sbjct: 119 TLVVVKLSCALFLDIPT-TVWLPSLKALHLKSVEYSDDDSIQKLLSGCPVLEELVIEREE 177

Query: 184 NDEGPTTKFVISSSTLKQCTLWVETEG--EMFTQA--EYKVRITAPSLERLHIMSDIFGK 239
            D        +S+ +LK   ++  T+G    + Q   +YKV + AP+LE L I   +   
Sbjct: 178 RDNQWVVN--VSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPNLEYLSITDYLSKD 235

Query: 240 FVVHDLNSLTDVILDIVYG--EWSRVDPNRSI-------QLLQQLNNTTSLTVSYGVLCA 290
           + V DL SL    +D+     E+     N  I       +LL +++N   L+++ GV   
Sbjct: 236 YFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGRISNVKCLSLT-GVTLD 294

Query: 291 LDHAYHKWFPALSYLQHLE-VAVGAIGWAVLPVILSSSVHLQSLVLRKV 338
           +        P    +  LE + +G   W  LP  L SS +L++LV+  V
Sbjct: 295 VSFLCPPILPTFHNMTCLEFLFIGGFNWDFLPNFLHSSPNLEALVIETV 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 169/364 (46%), Gaps = 43/364 (11%)

Query: 7   INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGM--MGDP 64
           I+ LPD +LCHILS+LPTK  V TSIL++RW+ +W S+  L FDD        +  + + 
Sbjct: 12  ISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELEER 71

Query: 65  MPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILT--------RITALSCLC 116
           +  F++F++ VL  ++   I  F       LG     L+ + +        R+  L    
Sbjct: 72  IIMFQNFVDGVLRHSEVSCIKKF------RLGYRDNNLDSVYSWICIALERRVQELDLHL 125

Query: 117 QIE--------LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKL 167
            I+         +   ++ V+KL     L +P      P++K L ++ +E  D+   +KL
Sbjct: 126 LIDWRVELPPMFFICKTLVVVKLSCALFLDIPT-TVWLPSLKALHLKSVEYSDDDSIQKL 184

Query: 168 FCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEG--EMFTQA--EYKVRIT 223
              CP LEEL I+    D        +S+ +LK   ++  T+G    + Q   +YKV + 
Sbjct: 185 LSGCPVLEELVIEREERDNQWVVN--VSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVD 242

Query: 224 APSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYG--EWSRVDPNRSI-------QLLQQ 274
           AP+LE L I   +   + V DL SL    +D+     E+     N  I       +LL +
Sbjct: 243 APNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGR 302

Query: 275 LNNTTSLTVSYGVLCALDHAYHKW-FPALSYLQHLE-VAVGAIGWAVLPVILSSSVHLQS 332
           ++N   L+++   L +L      +  P    +  LE + +G   W  LP  L SS +L++
Sbjct: 303 ISNVKCLSLTGVTLDSLSGTIGDYKLPTFHNMTRLEFLFIGGFNWDFLPNFLHSSPNLEA 362

Query: 333 LVLR 336
           LV+ 
Sbjct: 363 LVIE 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328947|ref|NP_194364.2| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75244651|sp|Q8H1R7.1|FDL27_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At4g26340 gi|23296372|gb|AAN13055.1| unknown protein [Arabidopsis thaliana] gi|332659787|gb|AEE85187.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 44/347 (12%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RI+ L D +L  ILS++P K+VVATS+L++RW+ +W  + +L +DD          GD  
Sbjct: 3   RISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYH------TGD-Y 55

Query: 66  PGFEDFIERVLTGTQPMNITIFFMH----CSKL-LGVMLG-----RLNYILTRITALSCL 115
             F  F+ R L       I    ++    C  + +G+ +G     RL  +   I   S  
Sbjct: 56  KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSND 115

Query: 116 CQI----ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLFCS 170
                   LY S ++E L+L++  LL VP+   C P++K+L ++ ++  D+     L   
Sbjct: 116 ASFSLPSSLYTSDTLETLRLINFVLLDVPS-SVCLPSLKVLHLKTVDYEDDASLPSLLFG 174

Query: 171 CPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERL 230
           CP+LEEL ++ +  D      FV+ S  L++ ++  +  G    Q +  V I  PSL+ L
Sbjct: 175 CPNLEELFVERHDQDLEMDVTFVVPS--LRRLSMIDKNYG----QCDRYV-IDVPSLKYL 227

Query: 231 HIMSD-IFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLC 289
           +I  D ++    + ++  L +  +DI  G   +    R++  ++QL+   SL+    V+C
Sbjct: 228 NITDDAVYDVRQIENMPELVEAHVDITQGVTHKF--LRALTSVRQLSLCLSLS---EVMC 282

Query: 290 ALDHAYHKWFPALSYLQHLEVAVGAIG-WAVLPVILSSSVHLQSLVL 335
                +       S L HL ++    G W +L  +L  S  LQSL L
Sbjct: 283 PSGIIF-------SQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKL 322

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219960|ref|NP_173138.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana] gi|75263253|sp|Q9FZ53.1|FDL4_ARATH RecName: Full=Putative F-box/FBD/LRR-repeat protein At1g16940 gi|9802770|gb|AAF99839.1|AC051629_6 Hypothetical protein [Arabidopsis thaliana] gi|332191403|gb|AEE29524.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 155/352 (44%), Gaps = 58/352 (16%)

Query: 7   INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGM----MG 62
           IN LPDS+LC I   LPT+ VV TS++ RRW+ VW S             LPG+     G
Sbjct: 13  INQLPDSLLCEIFFNLPTEEVVKTSLICRRWRYVWQS-------------LPGLDLVING 59

Query: 63  DPMPGFEDFIERVLTGTQPMNITIFFMH-CSKLLGVMLGRLNYILTRITALSCLCQIELY 121
                  DF+ER +   +     + + H C  +  +M+   N I  +I  L  +     Y
Sbjct: 60  SKNYDKFDFLERFMFLQRVKLRYVGYGHNCRNMTSMMMN--NVIKHKIQHLD-VGSNRRY 116

Query: 122 ASPSVEV-------------LKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKL 167
               VE+             LKL    L K P      P +KI+ +Q +   D++  EKL
Sbjct: 117 VYDRVEIPPTIYTSCERLVFLKLHRANLPKSP-DSVSLPCLKIMDLQKINFVDSLDMEKL 175

Query: 168 FCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSL 227
              CP+LE L++      +      V S S L  C    ET G + TQ    V +  P L
Sbjct: 176 VSVCPALETLTMDKMYGAK------VSSQSLLSFCLTNNET-GYLKTQ----VVMQTPKL 224

Query: 228 ERLHIMSDIFGKFVVHDLNSLTDVILDIV--YGEWSRVDPNRSIQLLQQLNNTTSLTVSY 285
           + L +      + V++DL+S+  + LD V  +GE         + +L+ ++    LT+S+
Sbjct: 225 KYLKLNRQFIQRIVINDLSSIVMLNLDDVAYFGE-------TLLSILKLISCVRDLTISF 277

Query: 286 GVLCALDH-AYHKWFPALSYLQHLEVAVGAIG-WAVLPVILSSSVHLQSLVL 335
            +L    H +  K  P    L  L V   A+G W  L + L S  +L+SLV+
Sbjct: 278 DILQDYRHFSKSKSLPKFHKLSVLSVKDMAVGSWESLLIFLESCQNLKSLVM 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819758|ref|XP_002877762.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297323600|gb|EFH54021.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 161/351 (45%), Gaps = 43/351 (12%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RI+ L D +L  I S LPTK+VV T +L++RWK +WT + KL FDD +    P   G   
Sbjct: 3   RISNLSDDLLLKIFSSLPTKDVVVTMLLSKRWKFLWTMVPKLRFDD-EFELDPSYYG--- 58

Query: 66  PGFEDFIER--VLTGTQPMNITIFFMH--CSKLLGVMLGRLNYI--LTRITALSCLCQIE 119
             F  ++++  VL   Q +    F +   CS        R+  +  +  +    C     
Sbjct: 59  -RFLKYVDKSMVLNRAQVLETVKFDVGPCCSSEDIATWIRIGMVRHMRELEISHCEAYFR 117

Query: 120 ----------LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLF 168
                     LY    +EVLKL S  +L VP    CFP++K L +  +E        +L 
Sbjct: 118 EHRSIKLPKSLYTYEKLEVLKLASTVVLNVPI-AVCFPSLKSLHLVCVEYKTKKSHRRLL 176

Query: 169 CSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLE 228
             CP LE+L +    N       F +   TL++ ++ ++T GE++   ++   + APSL+
Sbjct: 177 SGCPVLEDLVLDKSYNS-FHVRSFYVEIPTLQRLSI-LDTSGELY--GDFTFVVNAPSLK 232

Query: 229 RLHIMSDIFGKFVVHD-LNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGV 287
             + + D +G   + D ++ + +  + ++Y      +P +   LL  L +   L++    
Sbjct: 233 YFNFV-DFYGDLCLRDTMHEVVEANIKVIYK-----NPKK---LLGPLKSVKRLSLCLSA 283

Query: 288 LCALDHAYHKWFPALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRK 337
              L H + +++     L HLE+   A+  W +L  +L SS  LQ L L K
Sbjct: 284 STTL-HNHMEFYQ----LVHLELCGDALMWWDLLTWMLESSPKLQVLKLYK 329

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086770|emb|CBI32919.3| unnamed protein product [Vitis vinifera]

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 158/341 (46%), Gaps = 47/341 (13%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RI+ LPD+VLCHI+S+LPTK  V TS+L++RW+ +W S+  L FDD         +GD  
Sbjct: 11  RISNLPDAVLCHIISFLPTKFAVGTSVLSKRWRYLWASIPNLDFDDDLLLDRDKPIGDSE 70

Query: 66  PG--FEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYAS 123
               F++F+++VL       I  F + CS          + + + + +  C         
Sbjct: 71  RSICFKNFVDKVLLHGSISCIRKFRLKCSD---------HELDSAVNSWICTA-----LE 116

Query: 124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYL 183
            +V+ L L  D    +      F    ++ ++L              CP LEEL I+ + 
Sbjct: 117 RNVQELDLYFDTEYPIELPPKFFFCKTLVVLKL--------------CPVLEELVIERWR 162

Query: 184 NDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVH 243
            DE     F +S+ TLK   ++          ++YK+ + AP+LE L I   +   +++ 
Sbjct: 163 LDEQWV--FNVSAPTLKSLAIYF---------SKYKLVVDAPNLEYLSITDFVSEDYLMS 211

Query: 244 DLNSLTDVILDI---VYGEWSRV-DPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKW- 298
           +L+SL    +++   + G   ++    R  +LL+ ++N   L++S   L +L   +  + 
Sbjct: 212 NLSSLVKAYVNVGPTIRGIDDQILYRGRIYELLRGISNVKHLSLSGETLHSLSGMFCGYE 271

Query: 299 FPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV 338
            PA   +  LE+ V    G   L   L +S +L+ L+L  V
Sbjct: 272 LPAFHSVTRLELEVDYGYGLEFLKEFLDTSPNLEILILENV 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844624|ref|XP_002890193.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336035|gb|EFH66452.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 150/358 (41%), Gaps = 42/358 (11%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RI+ LPDS+LC ILS L TK  V TS+L++RW+ +W  +  L  D   S   P    D +
Sbjct: 16  RISNLPDSLLCQILSDLSTKESVCTSVLSKRWRSLWLHVPALDLD---SNNFPD---DDV 69

Query: 66  PGFEDFIERVLTGTQPMNITIFFM-----------HCSKLLGVMLGRLNYILTRITALSC 114
             F  F+ R L      ++  F +             S +  V+  R+ +          
Sbjct: 70  --FVSFVNRFLVSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFNVHNEVDDD 127

Query: 115 LCQIELYASP----SVEVLKLMSDF--LLKVPAGGTCFPNVKILTMQLESPDNILT-EKL 167
               EL+  P    S E L  +  +  +L  P   +  P VKI+ + +   D   T E+L
Sbjct: 128 DDDDELFKMPLSLYSCESLVNLQLYRVVLDHPESVS-LPCVKIMHLDMVKYDADSTLERL 186

Query: 168 FCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSL 227
              C  LEEL+I    ND        + S +LK      + E E +    + V I AP L
Sbjct: 187 ISGCSVLEELTIVRDPNDSLQVV--CVRSKSLKS----FKIECERYESENHVVEIDAPRL 240

Query: 228 ERLHIMSDIFGKFVVHDLNSLT----DVILDIVYGEWSRVDPNRSIQLLQQ----LNNTT 279
           E +++       F++H++        DVI ++ Y +    D +  I +L +    L+  +
Sbjct: 241 EYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDPLEPDDSSKIAMLGKFLTGLSTVS 300

Query: 280 SLTVSYGVLCAL-DHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR 336
            + +S   L  + D+   +  P  S L  L        W +LP  L S  +L SLV+ 
Sbjct: 301 EMVISSDTLQVIHDYCKMEQLPQFSNLSRLHAYFEDSWWEMLPTFLESFPNLHSLVME 358

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539430|emb|CAB38963.1| putative protein [Arabidopsis thaliana] gi|7269486|emb|CAB79489.1| putative protein [Arabidopsis thaliana]

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 31/269 (11%)

Query: 6   RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
           RI+ L D +L  ILS++P K+VVATS+L++RW+ +W  + +L +DD          GD  
Sbjct: 3   RISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYH------TGD-Y 55

Query: 66  PGFEDFIERVLTGTQPMNITIFFMH----CSKL-LGVMLG-----RLNYILTRITALSCL 115
             F  F+ R L       I    ++    C  + +G+ +G     RL  +   I   S  
Sbjct: 56  KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSND 115

Query: 116 CQI----ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLFCS 170
                   LY S ++E L+L++  LL VP+   C P++K+L ++ ++  D+     L   
Sbjct: 116 ASFSLPSSLYTSDTLETLRLINFVLLDVPS-SVCLPSLKVLHLKTVDYEDDASLPSLLFG 174

Query: 171 CPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERL 230
           CP+LEEL ++ +  D      FV+ S  L++ ++  +  G    Q +  V I  PSL+ L
Sbjct: 175 CPNLEELFVERHDQDLEMDVTFVVPS--LRRLSMIDKNYG----QCDRYV-IDVPSLKYL 227

Query: 231 HIMSD-IFGKFVVHDLNSLTDVILDIVYG 258
           +I  D ++    + ++  L +  +DI  G
Sbjct: 228 NITDDAVYDVRQIENMPELVEAHVDITQG 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812929|ref|XP_002874348.1| hypothetical protein ARALYDRAFT_489554 [Arabidopsis lyrata subsp. lyrata] gi|297320185|gb|EFH50607.1| hypothetical protein ARALYDRAFT_489554 [Arabidopsis lyrata subsp. lyrata]

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 164/371 (44%), Gaps = 44/371 (11%)

Query: 2   VPAY-RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGM 60
           +P + RI+ LP+S++  IL  LPTK+ V TS+L+ RWK +W ++  L   D   R LP  
Sbjct: 1   MPGFDRISELPESLITQILLCLPTKDSVKTSVLSTRWKNLWLNVPGL---DLNCRDLPDQ 57

Query: 61  MGDPMPGFEDFIERVLTGTQPMNITIFFMHCSK--------LLGVMLGRLNYILTRITAL 112
             +    F +FI+R L       +  F +  S+         +G  + R   +L  +++ 
Sbjct: 58  DEEYEEVFINFIDRFLEFNPESRLQKFKVDYSRREILGFKDRIGTAINRGIRLLDAVSST 117

Query: 113 SC------------LCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESP 159
                            + L+ S ++  LKL    L     G    P +K++ +Q +   
Sbjct: 118 EYREDDGFMYPYFEFMPLNLFTSKTLVSLKLSCSGLRD--PGFVYMPCLKVMFLQEIRWS 175

Query: 160 DNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV-ISSSTLKQCTLWVETEGEMFTQA-- 216
             +  EKL   CP LEEL++  YL+++        + S +LK  T +V      F ++  
Sbjct: 176 GTMHLEKLVSGCPVLEELTLVRYLDEDELVVALTRVRSWSLK--TFYVPLTYGSFCRSRV 233

Query: 217 -EYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDI--VYGEWSRVDP------NR 267
            +  + I AP LE + +  D F K +V +L SL  + LDI  V    S  DP      N 
Sbjct: 234 LDTVLEIDAPGLESMTLKEDHFEKIIVKNLTSLFMIDLDIKFVVNYDSSFDPEDLWKTNE 293

Query: 268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHK--WFPALSYLQHLEVAVGAIGWAVLPVILS 325
            +  L  ++    + +S   + ALD +Y K    P  + L  L+    +     LP  L 
Sbjct: 294 ILDFLTGISRARHMIISKKTVKALD-SYSKVGSIPKFNNLSRLQAVFPSPLLPFLPAFLE 352

Query: 326 SSVHLQSLVLR 336
           S  +L+ L+L+
Sbjct: 353 SFPNLKILILK 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844280|ref|XP_002890021.1| F16A14.1 [Arabidopsis lyrata subsp. lyrata] gi|297335863|gb|EFH66280.1| F16A14.1 [Arabidopsis lyrata subsp. lyrata]

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 163/387 (42%), Gaps = 74/387 (19%)

Query: 1   MVPAY-RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPG 59
           ++P + RI+ LP+S++  IL +LPTK+ V TS+L+ RWK +W ++  L   D   R  P 
Sbjct: 1   VMPGFDRISELPESLISQILLHLPTKDSVKTSVLSTRWKNLWLNVPGL---DLNCRDFP- 56

Query: 60  MMGDPMPGFEDFIERVLTGTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIE 119
              +      DFI+R L           F + S+LL     ++NY    I   S   +I 
Sbjct: 57  FDNNNEKVLIDFIDRFLQ----------FNNESRLLKF---KVNYSRDEIIKFSD--RIR 101

Query: 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILT--------------- 164
              +  + VL + S+   +    G  +P ++ + + L +   +++               
Sbjct: 102 DAVNRRIRVLDVESNTYYQDADDGLVYPCIEFMPLNLYTSKTLVSLKLSFSGLADPGFVY 161

Query: 165 ----------------------EKLFCSCPSLEELSIQAYL-NDEGPTTKFVISSSTLKQ 201
                                 EKL   CP LEEL    YL +DE   T+  + S +LK+
Sbjct: 162 MPCLKFMHLREVRWHSSGTMNLEKLVSGCPVLEEL---IYLCDDELVVTR--VRSRSLKR 216

Query: 202 CTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDI--VYGE 259
            ++  E     F        I AP LE + +  D F +F+V +L SL  + LDI  ++G 
Sbjct: 217 FSIPSEHSISCFRSVAQTFEIDAPGLEYMSLKEDHFDRFMVKNLTSLFMIDLDIKFIFGF 276

Query: 260 WSRVDP------NRSIQLLQQLNNTTSLTVSYGVLCALDHAYHK--WFPALSYLQHLEVA 311
               DP      N     L  ++    + +S+  + AL H Y K    P  + +  L+  
Sbjct: 277 GRMFDPEDLAKRNEIRDFLTGISIVRHMIISHQTVKAL-HIYSKVGSIPKFNNVSRLQAE 335

Query: 312 VGAIGWAVLPVILSSSVHLQSLVLRKV 338
             +     LP  L S  +L+ L+L+ V
Sbjct: 336 FPSSLLQFLPAFLESFPNLKHLILKIV 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.697	0.568	0.286	2e-17
TAIR|locus:2101674	427	AT3G50710 "AT3G50710" [Arabido	0.706	0.564	0.285	8e-16
TAIR|locus:2161053	422	AT5G56420 "AT5G56420" [Arabido	0.697	0.563	0.271	6.8e-14
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.648	0.493	0.297	1.4e-13
TAIR|locus:2165071	435	AT5G56810 [Arabidopsis thalian	0.692	0.542	0.294	2.1e-12
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.692	0.453	0.286	2.4e-12
TAIR|locus:2089566	442	AT3G14710 "AT3G14710" [Arabido	0.721	0.556	0.278	3.8e-12
TAIR|locus:2015571	434	AT1G16940 "AT1G16940" [Arabido	0.680	0.534	0.322	6.3e-12
TAIR|locus:2014859	456	AT1G13780 "AT1G13780" [Arabido	0.392	0.293	0.314	9.8e-12
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.217	0.164	0.378	1.9e-11

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 77/269 (28%), Positives = 132/269 (49%)

Query:     6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
             RI+ L D +L  ILS++P K+VVATS+L++RW+ +W  + +L +DD          GD  
Sbjct:     3 RISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHT------GD-Y 55

Query:    66 PGFEDFIERVLTGTQPMNITIFFMH----CSKL-LGVMLG-----RLNYILTRITALSCL 115
               F  F+ R L       I    ++    C  + +G+ +G     RL  +   I   S  
Sbjct:    56 KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSND 115

Query:   116 CQIEL----YASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLFCS 170
                 L    Y S ++E L+L++  LL VP+   C P++K+L ++ ++  D+     L   
Sbjct:   116 ASFSLPSSLYTSDTLETLRLINFVLLDVPSS-VCLPSLKVLHLKTVDYEDDASLPSLLFG 174

Query:   171 CPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERL 230
             CP+LEEL ++ +  D      FV+ S  L++ ++  +  G    Q +  V I  PSL+ L
Sbjct:   175 CPNLEELFVERHDQDLEMDVTFVVPS--LRRLSMIDKNYG----QCDRYV-IDVPSLKYL 227

Query:   231 HIMSD-IFGKFVVHDLNSLTDVILDIVYG 258
             +I  D ++    + ++  L +  +DI  G
Sbjct:   228 NITDDAVYDVRQIENMPELVEAHVDITQG 256

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101674 AT3G50710 "AT3G50710" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 77/270 (28%), Positives = 126/270 (46%)

Query:     6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
             RI+ L D +L  I+S LPTK+VV T +L++RWK +W  + KL FDD      P   G   
Sbjct:     3 RISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELE-PSYYGR-- 59

Query:    66 PGFEDFIER--VLTGTQPMNITIFFMH--CSK---LLGVMLGRL-NYILTRITAL----- 112
               F  ++++  VL   Q +    F +   CS       + +G + N     I+       
Sbjct:    60 --FLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYFR 117

Query:   113 ---SCLCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLF 168
                S      LY    +EVLKL S  +L VP    CFP++K L +  +E        +L 
Sbjct:   118 EHRSIKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSHRRLL 176

Query:   169 CSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLE 228
               CP LEEL +    N       F +   TL+  ++ ++T GE++   ++   + AP+L+
Sbjct:   177 SGCPVLEELVLDKSYNSFH-VRSFYVEIPTLQSLSI-LDTSGELY--GDFTFVVNAPALK 232

Query:   229 RLHIMSDIFGKFVVHD-LNSLTDVILDIVY 257
               + + D +G   + D +  + DV + ++Y
Sbjct:   233 YFNFV-DFYGDLCLRDNMPEVVDVNIKVIY 261

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161053 AT5G56420 "AT5G56420" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 73/269 (27%), Positives = 134/269 (49%)

Query:     6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
             R++ LPD  L  ILS+LPTK+V+ TS+L++RW+ +WT + +L +D R       +  +  
Sbjct:     7 RLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLR-------LHDNTC 59

Query:    66 PGFEDFIER-VLTGTQP----MNITI--FFMHCSKLLGVMLG-RLNYILTRITALSCLCQ 117
             P F  F++R +L    P    +NI I        K +GV +   ++  +  ++   C  +
Sbjct:    60 PRFSQFVDRSLLLHKAPTLESLNIKIGSICFTAEKDVGVWVRIGVDRFVRELSVSYCSGE 119

Query:   118 --IEL----YASPSVEVLKLMSDFLLKVPAGGTCFPNVKIL-TMQLESPDNILTEKLFCS 170
               I L    +   ++ VLKL  +  L+  +   CF ++K L  + ++  D+    ++  S
Sbjct:   120 EPIRLPKCLFTCSTLAVLKL-ENITLEDASCYVCFQSLKTLHLLDVKYLDDQSLPRIISS 178

Query:   171 CPSLEELSIQAYLNDEGPTTKFV-ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLER 229
             C SLE+L +Q      G   K V +++ +LK  TL +    + F   +    I  P L+R
Sbjct:   179 CSSLEDLVVQRC---PGDNVKVVTVTAPSLK--TLSLHKSSQAFEGDDDGFLIDTPKLKR 233

Query:   230 LHIMSDIFGKFV-VHDLNSLTDVILDIVY 257
             + I  D +G F  + ++  + +  +D++Y
Sbjct:   234 VDI-EDYWGGFCYIENMPEVVEANVDVIY 261

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 72/242 (29%), Positives = 118/242 (48%)

Query:     6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
             RI+ LPD++L  ILS LPT+N +ATS+L++RW+ +WT L KL FD   +        DP 
Sbjct:    14 RISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNIDPT 73

Query:    66 PGFEDFIERVLTGTQPM--NITIFFMHCSKLL--GVMLGRLNYILTRITALSCLCQIE-- 119
                E+  + +     P+  ++ + F   +  L  G+ +        R   L    Q +  
Sbjct:    74 MFSENVYKTLSLHKAPVLESLHLSFEGRTDCLHVGIWIATAFARGVRKLVLDSFYQEDQT 133

Query:   120 ------LYA-SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTM-QLESPDNILTEKLFCSC 171
                   L++ + S+E+LKL     L  P+   C  +++ L + Q+   D      L C C
Sbjct:   134 VTLPSVLFSYNDSLEILKLKCAIDLDFPSR-VCLKSLRKLYLDQVHFKDEESVCNLLCGC 192

Query:   172 PSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLW-VETEGEMFTQAEYKVRITAPSLERL 230
             PSL++L +  Y N +  T  F I+S +L++ T+  +  EG  +    Y   I AP L+ L
Sbjct:   193 PSLQDLVVHRYSNADVAT--FTIASPSLQRLTIEDLRQEGG-YGNGSYV--INAPGLKYL 247

Query:   231 HI 232
             +I
Sbjct:   248 NI 249

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165071 AT5G56810 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 76/258 (29%), Positives = 126/258 (48%)

Query:     6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMG-DP 64
             RI+ LP+ +L  ILS +P  + ++TS+L++RWK VW  L  L +++     + G +G D 
Sbjct:    16 RISQLPNDLLFRILSLIPVSDAMSTSLLSKRWKSVWKMLPTLVYNENSCSNI-GSLGFDQ 74

Query:    65 MPG-----FEDFIERVLT-----GTQPMNITIFFMHCSKLLGVMLGRLNYILTRITALSC 114
               G      E  + + LT      T  ++ +IF    S LL   +    Y +   T +S 
Sbjct:    75 FCGRSLQLHEAPLLKTLTLELRKQTDSLDSSIFPNIHSTLLEFSIKSTGYPVYYST-ISF 133

Query:   115 LCQIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILT-EKLFCSCPS 173
                ++++ +  + VLKL  +  L V     CF ++K L +   + +N  +  KL  +CP 
Sbjct:   134 PNNLDVFQT--LVVLKLQGNICLDVVDSPVCFQSLKSLYLTCVNFENEESFSKLLSACPV 191

Query:   174 LEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIM 233
             LE+L +Q  L   G    F IS  +L++ T     E   ++  E  + ITAPSL+ L+I 
Sbjct:   192 LEDLFLQR-LCSVGRFL-FSISVPSLQRLTY--TKEQAYYSNDEAILEITAPSLKHLNIF 247

Query:   234 SDIFGKF-VVHDLNSLTD 250
              D  G F  + D+  L +
Sbjct:   248 -DRVGVFSFIEDMPKLVE 264

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 75/262 (28%), Positives = 122/262 (46%)

Query:     6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRR-LPGMMGDP 64
             RI++LP+ V+ HILS+LPTK   +TS+L+++W+ ++  +  L FDD   +   P    + 
Sbjct:     8 RISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKSDVEL 67

Query:    65 MPGFEDFIERVLTGTQPMNITIFFMHCSKL---LGVMLGRLNYILTRITA---LSCL--- 115
                F +F++RVL      ++  F + CS     L  + G +  +L R  +   LS L   
Sbjct:    68 SRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDLSILEYP 127

Query:   116 CQIELYASPSVEVLKL--MSDFLLKVPAGGTCFPNVKILTMQLESPD----NILTEKLFC 169
                E++ S ++  LKL   +D  L +       P +K  T+ ++  D         KL  
Sbjct:   128 LPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLK--TLYIDCVDVQERGFGFVKLLS 185

Query:   170 SCPSLEELSIQAYLNDEGPTTKFV-ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLE 228
              CP LEEL +   +N      KF  +S  TLK+ T + E   E +   +  V    P+L 
Sbjct:   186 GCPVLEELVL---MNIGWENWKFCSVSVKTLKRLTFFCE---ETYENPK-SVSFDTPNLV 238

Query:   229 RLHIMSDIFGKFVVHDLNSLTD 250
              L     I  K+   + NSL +
Sbjct:   239 YLEYSDAIASKYPKVNFNSLVE 260

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089566 AT3G14710 "AT3G14710" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 76/273 (27%), Positives = 134/273 (49%)

Query:     6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
             + ++L +SV+  ILS LPT   V+TS+L++ WK +WT++  L+FDD + R       DP 
Sbjct:    27 KFSSLLESVVSIILSQLPTAEAVSTSVLSKSWKNIWTNITDLHFDDTKQR-------DPS 79

Query:    66 PG-FEDFIERVLTGTQPMNITIFFMHCSKLL---GVMLGRLNYILTR-ITALSCLCQ-IE 119
                F DF+ERV+      +I+ F++ CS       ++   L+ +L R +  L   C  +E
Sbjct:    80 DSRFTDFVERVVGDIGSPHISSFYL-CSVNTFDETLLFSWLSKVLKRNLQRLVVTCNDLE 138

Query:   120 L--YAS--PS-VEV--LKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNI--LTEKLFCS 170
             +  ++S  PS V +  L+L +  +L + A     PN+K L+++     N+  +++ L  +
Sbjct:   139 IISFSSLFPSFVSLVELRLRTKSILDISAPAI-LPNLKFLSLEDARIFNMSSVSKNLVLN 197

Query:   171 CPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEY-KVRITAPSLER 229
              P LE     +Y       T  +I S  L+   ++  T   +   ++  K+R+ A  LE+
Sbjct:   198 FPVLETFEA-SYCRCFRTDT-VIIDSPLLRIFEMFKCTSEHVPNPSQVCKIRVLASKLEK 255

Query:   230 LHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSR 262
             +    D   K  +    SL D  L +   EW +
Sbjct:   256 ITFCGDEPRKIHLSFPPSLPDAYLALSRSEWPK 288

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015571 AT1G16940 "AT1G16940" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 86/267 (32%), Positives = 122/267 (45%)

Query:     7 INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMP 66
             IN LPDS+LC I   LPT+ VV TS++ RRW+ VW SL  L      S+       D + 
Sbjct:    13 INQLPDSLLCEIFFNLPTEEVVKTSLICRRWRYVWQSLPGLDLVINGSKNYDKF--DFLE 70

Query:    67 GFEDFIERVLT-----GTQPMNITIFFM-----HCSKLLGVMLGRLNYILTRITALSCLC 116
              F  F++RV       G    N+T   M     H  + L V   R  Y+  R+     + 
Sbjct:    71 RFM-FLQRVKLRYVGYGHNCRNMTSMMMNNVIKHKIQHLDVGSNR-RYVYDRVEIPPTI- 127

Query:   117 QIELYAS-PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ-LESPDNILTEKLFCSCPSL 174
                 Y S   +  LKL    L K P      P +KI+ +Q +   D++  EKL   CP+L
Sbjct:   128 ----YTSCERLVFLKLHRANLPKSP-DSVSLPCLKIMDLQKINFVDSLDMEKLVSVCPAL 182

Query:   175 EELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMS 234
             E L++     D+    K V S S L  C    ET G + TQ    V +  P L+ L +  
Sbjct:   183 ETLTM-----DKMYGAK-VSSQSLLSFCLTNNET-GYLKTQ----VVMQTPKLKYLKLNR 231

Query:   235 DIFGKFVVHDLNSLTDVILDIV--YGE 259
                 + V++DL+S+  + LD V  +GE
Sbjct:   232 QFIQRIVINDLSSIVMLNLDDVAYFGE 258

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014859 AT1G13780 "AT1G13780" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
 Identities = 45/143 (31%), Positives = 71/143 (49%)

Query:   118 IELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQ---LESPDNILTEKLFCSCPSL 174
             + LY+  ++  LKL S   L+ P G    P +K + ++    +S   +  EKL   CP L
Sbjct:   140 LNLYSCKTLVSLKL-SYSGLEDP-GFVYLPCLKFMHLREVRWDSSGTMNLEKLVSGCPVL 197

Query:   175 EELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMS 234
             EEL    YL+D+      V S S LK+ ++    +  +F +      I AP LE + + +
Sbjct:   198 EEL---IYLHDDKLVVTRVRSRS-LKRFSIPFRHKLSLFRRVTQTFEIDAPGLEYMSLKA 253

Query:   235 DIFGKFVVHDLNSLTDVILDIVY 257
             D F + VV +L SL  + LDI +
Sbjct:   254 DHFDRIVVKNLTSLFMIDLDIKF 276

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 31/82 (37%), Positives = 43/82 (52%)

Query:     6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPM 65
             RI+ LPDS+LC ILS L TK  V TS+L++RW+ +W  +  L   D  S   P    D +
Sbjct:    16 RISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVL---DLDSNNFPD---DDV 69

Query:    66 PGFEDFIERVLTGTQPMNITIF 87
               F  F+ R L      ++  F
Sbjct:    70 --FVSFVNRFLGSENEQHLERF 89

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000972001 SubName- Full=Chromosome chr19 scaffold_111, whole genome shotgun sequence; (360 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
pfam00646	48	pfam00646, F-box, F-box domain	6e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 6  RINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKLYFDDR 52
           +  LPD +L  ILS L  K+++  S++++RW+ +  SL+       
Sbjct: 2  SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.61
KOG4341	483	consensus F-box protein containing LRR [General fu	99.25
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.84
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.48
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.14
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.75
KOG4341	483	consensus F-box protein containing LRR [General fu	97.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.61
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.6
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.4
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.72
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.42
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	95.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.21
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.99
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.48
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.21
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.02
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	93.54
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	92.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	90.43
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	90.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	90.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	88.29
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	87.99
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	87.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	87.55
PRK15386	426	type III secretion protein GogB; Provisional	87.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	87.23
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.31
KOG0617	264	consensus Ras suppressor protein (contains leucine	84.96
PF13013	109	F-box-like_2: F-box-like domain	84.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	83.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	82.78
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	82.73
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	82.27
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	81.67
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.5
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	81.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	80.18

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=6.9e-17  Score=137.91  Aligned_cols=275  Identities=19%  Similarity=0.144  Sum_probs=169.4

Q ss_pred             cCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc---CceeEeecCCCCCCCCCCCCCcchHHHHHHHHhcCCCCE-
Q 047191            7 INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS---LQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQPM-   82 (341)
Q Consensus         7 is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~i-   82 (341)
                      ...|||||+..|||.|+.||+.+.+.|||||+++-+-   ...++...+...         +.    ...+.+.++--+ 
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~---------p~----~l~~l~~rgV~v~  164 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH---------PD----VLGRLLSRGVIVF  164 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC---------hh----HHHHHHhCCeEEE
Confidence            4579999999999999999999999999999976432   112333333321         11    222222233333 


Q ss_pred             EEEEEEeecCCCchhHHHHHHHHhcccccccccc--------cccccccCcceEEEEeeeeeeccCCC--cccCCchhhh
Q 047191           83 NITIFFMHCSKLLGVMLGRLNYILTRITALSCLC--------QIELYASPSVEVLKLMSDFLLKVPAG--GTCFPNVKIL  152 (341)
Q Consensus        83 ~l~l~~~~~~~~~~~~~~wl~~~~~~l~~L~~~~--------p~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L  152 (341)
                      ++.-.+   ...+... .-..-...++|.++..-        ...+..|..|+.|+| .+..+.++..  ...-.+|+.|
T Consensus       165 Rlar~~---~~~prla-e~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl-Eg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  165 RLARSF---MDQPRLA-EHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL-EGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             Ecchhh---hcCchhh-hhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc-cccccCcHHHHHHhccccceee
Confidence            443222   1111111 11111122266664322        233456999999999 8888876531  2234899999


Q ss_pred             hhhccC---CCcchHHHHHhcCCccceeEEeeeecCCCCce-eEEEeCCCcceEEEeeecCccccccCceeEEEecCCce
Q 047191          153 TMQLES---PDNILTEKLFCSCPSLEELSIQAYLNDEGPTT-KFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLE  228 (341)
Q Consensus       153 ~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~-~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~  228 (341)
                        +|..   +++.+++-++++|..|.+|+|..|....-.++ .+.--+++|+.|++++|. ..+..+....++-.+|+|.
T Consensus       240 --nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r-rnl~~sh~~tL~~rcp~l~  316 (419)
T KOG2120|consen  240 --NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR-RNLQKSHLSTLVRRCPNLV  316 (419)
T ss_pred             --ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH-hhhhhhHHHHHHHhCCcee
Confidence              8888   99999999999999999999999966421110 122246889999999963 2322234555666789999


Q ss_pred             EEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecch-hhhccccccCCCCCCCcccE
Q 047191          229 RLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGV-LCALDHAYHKWFPALSYLQH  307 (341)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~f~~L~~  307 (341)
                      .|+++++..-+..                          ..+.+-.++-+++|.++-.. +..-   ....+..-|.|+.
T Consensus       317 ~LDLSD~v~l~~~--------------------------~~~~~~kf~~L~~lSlsRCY~i~p~---~~~~l~s~psl~y  367 (419)
T KOG2120|consen  317 HLDLSDSVMLKND--------------------------CFQEFFKFNYLQHLSLSRCYDIIPE---TLLELNSKPSLVY  367 (419)
T ss_pred             eeccccccccCch--------------------------HHHHHHhcchheeeehhhhcCCChH---HeeeeccCcceEE
Confidence            9999876542110                          04444456677777775422 1000   0111224567999


Q ss_pred             EEEEEcCCChhHHHHHHhcCCCCCc
Q 047191          308 LEVAVGAIGWAVLPVILSSSVHLQS  332 (341)
Q Consensus       308 L~l~~~~~~~~~l~~ll~~cp~L~~  332 (341)
                      |++..+ ..+..+..+.+.||+|+.
T Consensus       368 Ldv~g~-vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  368 LDVFGC-VSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             EEeccc-cCchHHHHHHHhCccccc
Confidence            999887 333456778899999875

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.25  E-value=2.4e-13  Score=121.30  Aligned_cols=281  Identities=15%  Similarity=0.127  Sum_probs=134.7

Q ss_pred             CCChHHHHHHHcCCChhhhhhhhccccchHHh------hccCceeEeecCCCCCCCCCCCCCcchHHHHHHHHhcCC-CC
Q 047191            9 ALPDSVLCHILSYLPTKNVVATSILARRWKLV------WTSLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGT-QP   81 (341)
Q Consensus         9 ~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~   81 (341)
                      .||.|++.+|||+|+++++.|++.+|+-|..+      |.++.-.+|... .   +          ...|..+..+. +.
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD-v---~----------g~VV~~~~~Rcgg~  139 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD-V---D----------GGVVENMISRCGGF  139 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc-C---C----------CcceehHhhhhccc
Confidence            49999999999999999999999999999865      332221111110 0   0          11222233321 23


Q ss_pred             E-EEEEEEeecCCCchhHHHHHHHHhcccccccccccccccccCcceEEEEeeeee-eccCC---CcccCCchhhhhhhc
Q 047191           82 M-NITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFL-LKVPA---GGTCFPNVKILTMQL  156 (341)
Q Consensus        82 i-~l~l~~~~~~~~~~~~~~wl~~~~~~l~~L~~~~p~~~~~~~~L~~L~L~~~~~-l~~~~---~~~~~~~L~~L~~~L  156 (341)
                      + .+++.- ..+.....+..                  ....|+++++|.+ .+|. +.+..   .+..+++|+.|  .|
T Consensus       140 lk~LSlrG-~r~v~~sslrt------------------~~~~CpnIehL~l-~gc~~iTd~s~~sla~~C~~l~~l--~L  197 (483)
T KOG4341|consen  140 LKELSLRG-CRAVGDSSLRT------------------FASNCPNIEHLAL-YGCKKITDSSLLSLARYCRKLRHL--NL  197 (483)
T ss_pred             cccccccc-cccCCcchhhH------------------HhhhCCchhhhhh-hcceeccHHHHHHHHHhcchhhhh--hh
Confidence            3 444444 22222211110                  0112555555555 4433 11110   12235666666  66


Q ss_pred             cC---CCcchHHHHHhcCCccceeEEeeeec---CCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEE
Q 047191          157 ES---PDNILTEKLFCSCPSLEELSIQAYLN---DEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERL  230 (341)
Q Consensus       157 ~~---~~~~~l~~ll~~cp~Le~L~L~~c~~---~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l  230 (341)
                      ..   +|+..+..+..+||+|+.|++..|.-   .+++  .+.-.+..++.+...+|...++  .....+.-.++.+.++
T Consensus       198 ~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~--~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~l  273 (483)
T KOG4341|consen  198 HSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ--ALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKL  273 (483)
T ss_pred             cccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch--HHhccchhhhhhhhcccccccH--HHHHHHhccChHhhcc
Confidence            55   56666666666666666666666632   1122  2222333344444444432222  2222223233333333


Q ss_pred             Eeecccc-Ccee----ecCCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccccccCCC-CCCC
Q 047191          231 HIMSDIF-GKFV----VHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAYHKWF-PALS  303 (341)
Q Consensus       231 ~~~~~~~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~-~~f~  303 (341)
                      .+..+.. ....    -.++..|+.+...-+...     .... ..+-++..+++.|.+....-  +....+..+ .+.+
T Consensus       274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~-----~d~~l~aLg~~~~~L~~l~l~~c~~--fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI-----TDEVLWALGQHCHNLQVLELSGCQQ--FSDRGFTMLGRNCP  346 (483)
T ss_pred             chhhhccccchHHHHHhhhhhHhhhhcccCCCCC-----chHHHHHHhcCCCceEEEeccccch--hhhhhhhhhhcCCh
Confidence            3222110 0000    011112222111111000     0001 66667778888888865421  111111111 1566


Q ss_pred             cccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEe
Q 047191          304 YLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLR  336 (341)
Q Consensus       304 ~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~  336 (341)
                      .|+.|.++.+ ...+..+.++-.+||.|++|.++
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls  380 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLS  380 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence            7888888877 44455678888888888888776

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.84  E-value=2.2e-09  Score=68.10  Aligned_cols=35  Identities=37%  Similarity=0.813  Sum_probs=31.1

Q ss_pred             cCCCChHHHHHHHcCCChhhhhhhhccccchHHhh
Q 047191            7 INALPDSVLCHILSYLPTKNVVATSILARRWKLVW   41 (341)
Q Consensus         7 is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw   41 (341)
                      |+.||+||+.+||++|+.+|.++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999875

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.48  E-value=4.8e-08  Score=62.20  Aligned_cols=37  Identities=38%  Similarity=0.766  Sum_probs=31.3

Q ss_pred             cCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc
Q 047191            7 INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS   43 (341)
Q Consensus         7 is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~   43 (341)
                      +++||+|++.+|+++|+.+|.++.+.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5789999999999999999999999999999988654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.29  E-value=4.7e-07  Score=55.37  Aligned_cols=33  Identities=39%  Similarity=0.734  Sum_probs=31.3

Q ss_pred             CChHHHHHHHcCCChhhhhhhhccccchHHhhc
Q 047191           10 LPDSVLCHILSYLPTKNVVATSILARRWKLVWT   42 (341)
Q Consensus        10 LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~   42 (341)
                      ||+|++.+|+++|+.+|..+++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.2e-07  Score=85.73  Aligned_cols=199  Identities=19%  Similarity=0.164  Sum_probs=135.8

Q ss_pred             cCcceEEEEeeeeeeccCC---CcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeee----ecCCCCceeE
Q 047191          123 SPSVEVLKLMSDFLLKVPA---GGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAY----LNDEGPTTKF  192 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c----~~~~~~~~~l  192 (341)
                      ...|+...| .++....++   ....||+++.|  +|..   .....+.+++...|.||.|+|+.-    ....    ..
T Consensus       120 ~kkL~~IsL-dn~~V~~~~~~~~~k~~~~v~~L--dLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~  192 (505)
T KOG3207|consen  120 LKKLREISL-DNYRVEDAGIEEYSKILPNVRDL--DLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NT  192 (505)
T ss_pred             HHhhhheee-cCccccccchhhhhhhCCcceee--cchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cc
Confidence            356777888 777776553   34569999999  9999   777899999999999999999873    2222    23


Q ss_pred             EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccC---ceeecCCCCeeEEEEEEEeCccccCCCccch
Q 047191          193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRSI  269 (341)
Q Consensus       193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~  269 (341)
                      .-..++||.|++..|   ++.+.....+....|+|+.|.+.+....   .........|+++++.-.  ....|+   ..
T Consensus       193 ~~~l~~lK~L~l~~C---Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N--~li~~~---~~  264 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSC---GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN--NLIDFD---QG  264 (505)
T ss_pred             hhhhhhhheEEeccC---CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC--cccccc---cc
Confidence            446788999999994   6555567788888999999999876321   122334445666655321  111111   03


Q ss_pred             HHhhcCCCceEEEEecchhhhccccccC---CCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191          270 QLLQQLNNTTSLTVSYGVLCALDHAYHK---WFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~---~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .....++++..|.++.+++.-+..++++   ..-.|+.|+.|.+..+ -.+|..+-+ ++..++|+.|.+..
T Consensus       265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITL  335 (505)
T ss_pred             cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhccc
Confidence            4566889999999998887655433331   2237899999999987 335665544 55667777776543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.02  E-value=4.6e-06  Score=87.21  Aligned_cols=210  Identities=19%  Similarity=0.095  Sum_probs=99.1

Q ss_pred             ccccc-ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191          117 QIELY-ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV  193 (341)
Q Consensus       117 p~~~~-~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~  193 (341)
                      |..++ .+.+|++|+| ++..+........+++|++|  +|.+  ++ ..+..-+.++++|+.|++.++.-.+.. |.--
T Consensus       110 p~~~~~~l~~L~~L~L-s~n~l~~~~p~~~l~~L~~L--~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~  184 (968)
T PLN00113        110 PDDIFTTSSSLRYLNL-SNNNFTGSIPRGSIPNLETL--DLSNNMLS-GEIPNDIGSFSSLKVLDLGGNVLVGKI-PNSL  184 (968)
T ss_pred             ChHHhccCCCCCEEEC-cCCccccccCccccCCCCEE--ECcCCccc-ccCChHHhcCCCCCEEECccCcccccC-Chhh
Confidence            55555 6788888888 65555322123457788888  7777  32 223333667788888888776432111 0111


Q ss_pred             EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc---eeecCCCCeeEEEEEEEeCcccc---CCC--
Q 047191          194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK---FVVHDLNSLTDVILDIVYGEWSR---VDP--  265 (341)
Q Consensus       194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~---~~~--  265 (341)
                      -..++|+.|++.+|.-.+.    .....-..++|++|.+.+.....   ..+.++++|+.+++.........   +..  
T Consensus       185 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             hhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence            2345677777766321110    00011124455555555433211   12344455555444321110000   000  


Q ss_pred             ---------c---cc-hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCc
Q 047191          266 ---------N---RS-IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQS  332 (341)
Q Consensus       266 ---------~---~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~  332 (341)
                               .   .. ...+..+++++.|.++.+.+...   ....+..+++|+.|++..+... ..+...+..+|+|+.
T Consensus       261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~  336 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE---IPELVIQLQNLEILHLFSNNFT-GKIPVALTSLPRLQV  336 (968)
T ss_pred             CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC---CChhHcCCCCCcEEECCCCccC-CcCChhHhcCCCCCE
Confidence                     0   00 12233445555555554432211   0111224567777777665111 122344667788888


Q ss_pred             EEEeeee
Q 047191          333 LVLRKVI  339 (341)
Q Consensus       333 L~l~~~~  339 (341)
                      |.+.+-.
T Consensus       337 L~L~~n~  343 (968)
T PLN00113        337 LQLWSNK  343 (968)
T ss_pred             EECcCCC
Confidence            8886643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.87  E-value=6.7e-06  Score=72.73  Aligned_cols=173  Identities=17%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             cCCchhhhhhhccC--CCc---chHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCcee
Q 047191          145 CFPNVKILTMQLES--PDN---ILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYK  219 (341)
Q Consensus       145 ~~~~L~~L~~~L~~--~~~---~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~  219 (341)
                      .+|+|++|  +|++  +++   ..+..++++|..||+|.|.+|.-....  . ..-+.-|..|.             ...
T Consensus        90 ~~~~L~~l--dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a--g-~~l~~al~~l~-------------~~k  151 (382)
T KOG1909|consen   90 GCPKLQKL--DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA--G-GRLGRALFELA-------------VNK  151 (382)
T ss_pred             cCCceeEe--eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH--H-HHHHHHHHHHH-------------HHh
Confidence            34566666  6666  333   456777999999999999999532100  0 00000011111             122


Q ss_pred             EEEecCCceEEEeeccccCce-------eecCCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhc
Q 047191          220 VRITAPSLERLHIMSDIFGKF-------VVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCAL  291 (341)
Q Consensus       220 ~~~~~p~L~~l~~~~~~~~~~-------~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~  291 (341)
                      ..-+.|.|+.|........+.       .+...|.|+++.+.-.....   +...- ..-+..+++++.|.+..+++..-
T Consensus       152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC---chhHHHHHHHHhCCcceeeecccchhhhH
Confidence            233466677776653322211       25556777776654221111   11111 55678899999999999887543


Q ss_pred             cc-cccCCCCCCCcccEEEEEEc---CCChh-HHHHHHhcCCCCCcEEEeee
Q 047191          292 DH-AYHKWFPALSYLQHLEVAVG---AIGWA-VLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       292 ~~-~~~~~~~~f~~L~~L~l~~~---~~~~~-~l~~ll~~cp~L~~L~l~~~  338 (341)
                      .. .-.+.+|.+++|++|++.+|   ..+.. ....+-+..|+|+.|.+.+=
T Consensus       229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence            21 11345678999999999999   33333 34446666799999987653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.82  E-value=1.5e-05  Score=83.43  Aligned_cols=17  Identities=29%  Similarity=0.215  Sum_probs=9.5

Q ss_pred             HhhcCCCceEEEEecch
Q 047191          271 LLQQLNNTTSLTVSYGV  287 (341)
Q Consensus       271 ~l~~~~~l~~L~l~~~~  287 (341)
                      .+..+++++.|.++.+.
T Consensus       303 ~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        303 LVIQLQNLEILHLFSNN  319 (968)
T ss_pred             hHcCCCCCcEEECCCCc
Confidence            34455666666665543

>PLN03210 Resistant to P

Probab=97.75  E-value=2.5e-05  Score=82.86  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             ccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          122 ASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       122 ~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ...+|+.|++ .++.+.. +.....+++|+.|  +|.+ -.-..+.. ++.+++||.|.|.+|.....- |.---..++|
T Consensus       609 ~~~~L~~L~L-~~s~l~~L~~~~~~l~~Lk~L--~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~l-p~si~~L~~L  683 (1153)
T PLN03210        609 RPENLVKLQM-QGSKLEKLWDGVHSLTGLRNI--DLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL-PSSIQYLNKL  683 (1153)
T ss_pred             CccCCcEEEC-cCccccccccccccCCCCCEE--ECCCCCCcCcCCc-cccCCcccEEEecCCCCcccc-chhhhccCCC
Confidence            4578888888 6665543 3334567888888  8876 11112222 566888888888888653211 0111133567


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeecc
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSD  235 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~  235 (341)
                      +.|++.+|..-..   -.  ..+..++|++|.++|+
T Consensus       684 ~~L~L~~c~~L~~---Lp--~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        684 EDLDMSRCENLEI---LP--TGINLKSLYRLNLSGC  714 (1153)
T ss_pred             CEEeCCCCCCcCc---cC--CcCCCCCCCEEeCCCC
Confidence            7777777532211   00  1124556666666654

syringae 6; Provisional

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.62  E-value=4.9e-06  Score=75.20  Aligned_cols=204  Identities=16%  Similarity=0.048  Sum_probs=102.6

Q ss_pred             cCcceEEEEeeeee-eccC---CCcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeecCCCCc------
Q 047191          123 SPSVEVLKLMSDFL-LKVP---AGGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLNDEGPT------  189 (341)
Q Consensus       123 ~~~L~~L~L~~~~~-l~~~---~~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~------  189 (341)
                      |++|+++.| ..|. +...   ..+.+||+|+.|  ++.|   +++++++.+..+|..|+.+.+.+|...+...      
T Consensus       189 C~~l~~l~L-~~c~~iT~~~Lk~la~gC~kL~~l--NlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~  265 (483)
T KOG4341|consen  189 CRKLRHLNL-HSCSSITDVSLKYLAEGCRKLKYL--NLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA  265 (483)
T ss_pred             cchhhhhhh-cccchhHHHHHHHHHHhhhhHHHh--hhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc
Confidence            566666666 4432 2111   023467788888  7777   7777777777778777777777774422110      


Q ss_pred             ---eeEEE------------------eCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccC-c--e--eec
Q 047191          190 ---TKFVI------------------SSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFG-K--F--VVH  243 (341)
Q Consensus       190 ---~~l~i------------------~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~-~--~--~~~  243 (341)
                         ..+.+                  .+..|+.|...+|.+..+  .....+.-.+++|..+.+.++..- .  +  .-.
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR  343 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence               00011                  134455555555433222  223344445677777777765421 0  1  123


Q ss_pred             CCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccc--cccCCCC-CCCcccEEEEEEcCCChhH
Q 047191          244 DLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDH--AYHKWFP-ALSYLQHLEVAVGAIGWAV  319 (341)
Q Consensus       244 ~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~--~~~~~~~-~f~~L~~L~l~~~~~~~~~  319 (341)
                      +.++|++..+.-+...   ++.  . ..+-.+++.++.|.++-.. .+.+.  ....... ....|..|++..+....+.
T Consensus       344 n~~~Le~l~~e~~~~~---~d~--tL~sls~~C~~lr~lslshce-~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~  417 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLI---TDG--TLASLSRNCPRLRVLSLSHCE-LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA  417 (483)
T ss_pred             CChhhhhhccccccee---hhh--hHhhhccCCchhccCChhhhh-hhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence            4455555443211110   000  1 4555677777877776211 11100  0000000 2335666666666334445


Q ss_pred             HHHHHhcCCCCCcEEEee
Q 047191          320 LPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       320 l~~ll~~cp~L~~L~l~~  337 (341)
                      ....++.||+||.+++-+
T Consensus       418 ~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  418 TLEHLSICRNLERIELID  435 (483)
T ss_pred             HHHHHhhCcccceeeeec
Confidence            566677888888766544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.61  E-value=5.4e-06  Score=75.06  Aligned_cols=213  Identities=20%  Similarity=0.073  Sum_probs=115.2

Q ss_pred             ccccCcceEEEEeeeeeecc-C-------CCcccCCchhhhhhhccC--CC---cchHHHHHhcCCccceeEEeeeecCC
Q 047191          120 LYASPSVEVLKLMSDFLLKV-P-------AGGTCFPNVKILTMQLES--PD---NILTEKLFCSCPSLEELSIQAYLNDE  186 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~-~-------~~~~~~~~L~~L~~~L~~--~~---~~~l~~ll~~cp~Le~L~L~~c~~~~  186 (341)
                      +...++|++|.+ ....+.. +       .....+++|+.|  .+.+  .+   ...+..+..+ |.|+.|++.+|....
T Consensus        47 l~~~~~l~~l~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L--~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~  122 (319)
T cd00116          47 LRPQPSLKELCL-SLNETGRIPRGLQSLLQGLTKGCGLQEL--DLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGD  122 (319)
T ss_pred             HhhCCCceEEec-cccccCCcchHHHHHHHHHHhcCceeEE--EccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccch
Confidence            344667888888 6544331 1       012236788888  8877  33   2334444445 679999998885431


Q ss_pred             CCce----eEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-------eecCCCCeeEEEEEE
Q 047191          187 GPTT----KFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-------VVHDLNSLTDVILDI  255 (341)
Q Consensus       187 ~~~~----~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-------~~~~~~~L~~~~l~~  255 (341)
                      ...+    .+.-..++|+.|.+.+|.-...............++|++|++.+......       .+...++|+.+++.-
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  202 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN  202 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence            0100    01111268899998885321100000011112346788888887654311       123445788777653


Q ss_pred             EeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCCC-CCCcccEEEEEEcCC---ChhHHHHHHhcCCC
Q 047191          256 VYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFP-ALSYLQHLEVAVGAI---GWAVLPVILSSSVH  329 (341)
Q Consensus       256 ~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~-~f~~L~~L~l~~~~~---~~~~l~~ll~~cp~  329 (341)
                      .........   . ...+..+++++.|.++.+.+....... ...++ ..++|++|++..+..   +...+...+..+|+
T Consensus       203 n~i~~~~~~---~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~  279 (319)
T cd00116         203 NGLTDEGAS---ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES  279 (319)
T ss_pred             CccChHHHH---HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence            321110000   1 445567788999999876543211000 11111 246899999988833   34455666777788


Q ss_pred             CCcEEEeeee
Q 047191          330 LQSLVLRKVI  339 (341)
Q Consensus       330 L~~L~l~~~~  339 (341)
                      |+.+++.+-.
T Consensus       280 L~~l~l~~N~  289 (319)
T cd00116         280 LLELDLRGNK  289 (319)
T ss_pred             ccEEECCCCC
Confidence            8888887643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.60  E-value=6.9e-06  Score=77.33  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=17.8

Q ss_pred             cCcceEEEEeeeeee-ccCC-CcccCCchhhhhhhccC
Q 047191          123 SPSVEVLKLMSDFLL-KVPA-GGTCFPNVKILTMQLES  158 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l-~~~~-~~~~~~~L~~L~~~L~~  158 (341)
                      ..+|..|+| .+-.+ ..|+ .+..+|+|+.|  .|..
T Consensus       196 lnsL~tlkL-srNrittLp~r~Fk~L~~L~~L--dLnr  230 (873)
T KOG4194|consen  196 LNSLLTLKL-SRNRITTLPQRSFKRLPKLESL--DLNR  230 (873)
T ss_pred             cchheeeec-ccCcccccCHHHhhhcchhhhh--hccc
Confidence            457777777 43333 2232 23446667777  6655

>PLN03210 Resistant to P

Probab=97.50  E-value=8.8e-05  Score=78.73  Aligned_cols=78  Identities=15%  Similarity=0.129  Sum_probs=36.0

Q ss_pred             CcceEEEEeeeeeeccCCCcccCCchhhhhhhccCCCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCCCcceE
Q 047191          124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSSTLKQC  202 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~sL~~L  202 (341)
                      .+|+.|.+ .+..+...|....+.+|+.|  .|.+-.-..+..-+..+++|+.|+|.+|.... .+  .+ -..++|+.|
T Consensus       589 ~~Lr~L~~-~~~~l~~lP~~f~~~~L~~L--~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~l-s~l~~Le~L  662 (1153)
T PLN03210        589 PKLRLLRW-DKYPLRCMPSNFRPENLVKL--QMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DL-SMATNLETL  662 (1153)
T ss_pred             cccEEEEe-cCCCCCCCCCcCCccCCcEE--ECcCccccccccccccCCCCCEEECCCCCCcCcCC--cc-ccCCcccEE
Confidence            34666666 54444433344445566666  55551111111113456666666666654321 11  11 123556666


Q ss_pred             EEeee
Q 047191          203 TLWVE  207 (341)
Q Consensus       203 ~i~~c  207 (341)
                      .+.+|
T Consensus       663 ~L~~c  667 (1153)
T PLN03210        663 KLSDC  667 (1153)
T ss_pred             EecCC
Confidence            66664

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.40  E-value=2.9e-05  Score=70.26  Aligned_cols=211  Identities=17%  Similarity=0.069  Sum_probs=121.9

Q ss_pred             cCcceEEEEeeeeeeccC-----C-CcccCCchhhhhhhccC--CC--cchH---HHHHhcCCccceeEEeeeecCCCCc
Q 047191          123 SPSVEVLKLMSDFLLKVP-----A-GGTCFPNVKILTMQLES--PD--NILT---EKLFCSCPSLEELSIQAYLNDEGPT  189 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~-----~-~~~~~~~L~~L~~~L~~--~~--~~~l---~~ll~~cp~Le~L~L~~c~~~~~~~  189 (341)
                      ...|+.|.+ .++.+...     + ....+++|++|  .+..  ++  ...+   ...+..++.|+.|.+.+|.......
T Consensus        22 l~~L~~l~l-~~~~l~~~~~~~i~~~l~~~~~l~~l--~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          22 LLCLQVLRL-EGNTLGEEAAKALASALRPQPSLKEL--CLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HhhccEEee-cCCCCcHHHHHHHHHHHhhCCCceEE--eccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            455899999 87776221     1 22346779999  8877  44  3333   3446678899999999986531110


Q ss_pred             e---eEEEeCCCcceEEEeeecCccccccCc-eeEEEecCCceEEEeeccccCc-----e--eecCCCCeeEEEEEEEeC
Q 047191          190 T---KFVISSSTLKQCTLWVETEGEMFTQAE-YKVRITAPSLERLHIMSDIFGK-----F--VVHDLNSLTDVILDIVYG  258 (341)
Q Consensus       190 ~---~l~i~~~sL~~L~i~~c~~~~~~~~~~-~~~~~~~p~L~~l~~~~~~~~~-----~--~~~~~~~L~~~~l~~~~~  258 (341)
                      +   .+.-. ++|+.|++.+|.-........ ..+....|+|+.+.+.++....     +  .+..+++|+.+.+....-
T Consensus        99 ~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          99 GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            0   11112 569999999853211000000 0111113899999999876441     1  244556788776643211


Q ss_pred             ccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEcCCChhHHHHHHhcC----CCCCc
Q 047191          259 EWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVGAIGWAVLPVILSSS----VHLQS  332 (341)
Q Consensus       259 ~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~c----p~L~~  332 (341)
                      ......   . ...+...++++.|.++.+.+.-..... ...++.+++|++|++..+..+...+..+.+.+    +.|+.
T Consensus       178 ~~~~~~---~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~  254 (319)
T cd00116         178 GDAGIR---ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT  254 (319)
T ss_pred             chHHHH---HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence            110000   0 223445569999999877643211111 12345678999999998744444555555554    79999


Q ss_pred             EEEeeeee
Q 047191          333 LVLRKVII  340 (341)
Q Consensus       333 L~l~~~~~  340 (341)
                      |.+.+-.|
T Consensus       255 L~l~~n~i  262 (319)
T cd00116         255 LSLSCNDI  262 (319)
T ss_pred             EEccCCCC
Confidence            99987544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.18  E-value=0.00017  Score=68.19  Aligned_cols=207  Identities=17%  Similarity=0.151  Sum_probs=101.3

Q ss_pred             ccccCcceEEEEeeeeeeccCCCccc-CCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTC-FPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS  196 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~-~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~  196 (341)
                      ++..++|+.+++ ..-.+...|...+ ..+|+.|  +|.+  ++.-.-++ ++.-|.||.|+|+.-.-..++. .-.-..
T Consensus        98 f~nl~nLq~v~l-~~N~Lt~IP~f~~~sghl~~L--~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~-~sfp~~  172 (873)
T KOG4194|consen   98 FYNLPNLQEVNL-NKNELTRIPRFGHESGHLEKL--DLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPK-PSFPAK  172 (873)
T ss_pred             HhcCCcceeeee-ccchhhhcccccccccceeEE--eeeccccccccHHH-HHhHhhhhhhhhhhchhhcccC-CCCCCC
Confidence            456788888888 6555554445544 3458888  8888  44433333 5557788888887643222120 011123


Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccC---ceeecCCCCeeEEEEEEEeCccc---cC-------
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWS---RV-------  263 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~---~~-------  263 (341)
                      ..++.|++... ..+.  -....+. ...+|..|+++.....   ...+.++|+|+.++++.......   -|       
T Consensus       173 ~ni~~L~La~N-~It~--l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~  248 (873)
T KOG4194|consen  173 VNIKKLNLASN-RITT--LETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ  248 (873)
T ss_pred             CCceEEeeccc-cccc--ccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence            45777777662 1111  0001111 1125666666544332   12455666666655543221110   00       


Q ss_pred             ----CCcc--c--hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEE
Q 047191          264 ----DPNR--S--IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVL  335 (341)
Q Consensus       264 ----~~~~--~--~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l  335 (341)
                          ..+.  .  ++.+-++.++++|.|..+.++.+.   -.++..+..|++|+++++.+.--. ..==+-||+|+.|++
T Consensus       249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn---~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdL  324 (873)
T KOG4194|consen  249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN---EGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDL  324 (873)
T ss_pred             hhhhhhcCcccccCcceeeecccceeecccchhhhhh---cccccccchhhhhccchhhhheee-cchhhhcccceeEec
Confidence                0000  0  444445566666666655544321   123334556777777765110000 001235899999998


Q ss_pred             eeee
Q 047191          336 RKVI  339 (341)
Q Consensus       336 ~~~~  339 (341)
                      +.=.
T Consensus       325 s~N~  328 (873)
T KOG4194|consen  325 SSNR  328 (873)
T ss_pred             cccc
Confidence            7643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.16  E-value=1.8e-05  Score=75.76  Aligned_cols=108  Identities=23%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             cccCcceEEEEeee-eee-cc-----CCCcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeecC---CC
Q 047191          121 YASPSVEVLKLMSD-FLL-KV-----PAGGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLND---EG  187 (341)
Q Consensus       121 ~~~~~L~~L~L~~~-~~l-~~-----~~~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~---~~  187 (341)
                      ..|+.|+.|++ +. +.. ..     ......+++|+.|  .+..   +++.++..+...||.||.|.+.+|...   ++
T Consensus       211 ~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~~~~~~L~~l--~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  211 LKCPNLEELDL-SGCCLLITLSPLLLLLLLSICRKLKSL--DLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             hhCchhheecc-cCcccccccchhHhhhhhhhcCCcCcc--chhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence            44889999999 64 221 11     1123346899999  8888   799999999999999999998888742   22


Q ss_pred             CceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeecc
Q 047191          188 PTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSD  235 (341)
Q Consensus       188 ~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~  235 (341)
                      .  .+.-.+++|++|.+..|....+  .....+...+|+|+.|.+.+.
T Consensus       288 ~--~i~~~~~~L~~L~l~~c~~~~d--~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  288 V--SIAERCPSLRELDLSGCHGLTD--SGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             H--HHHHhcCcccEEeeecCccchH--HHHHHHHHhCcchhhhhhhhc
Confidence            2  3444678899999998754432  223333445777777665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00011  Score=64.10  Aligned_cols=111  Identities=18%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             cccccCcceEEEEeeeeeeccC--CCcc-c-CCchhhhhhhccC----CCcchHHHHHhcCCccceeEEeeeecCCCCce
Q 047191          119 ELYASPSVEVLKLMSDFLLKVP--AGGT-C-FPNVKILTMQLES----PDNILTEKLFCSCPSLEELSIQAYLNDEGPTT  190 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~--~~~~-~-~~~L~~L~~~L~~----~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~  190 (341)
                      .+.+|..|..|+| ++|.+..+  ...+ + -++|++|  +|.+    ....++..+...||+|-+|+|.+|....-.  
T Consensus       255 l~~scs~L~~LNl-sWc~l~~~~Vtv~V~hise~l~~L--NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--  329 (419)
T KOG2120|consen  255 LLSSCSRLDELNL-SWCFLFTEKVTVAVAHISETLTQL--NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--  329 (419)
T ss_pred             HHHhhhhHhhcCc-hHhhccchhhhHHHhhhchhhhhh--hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch--
Confidence            3456999999999 77665322  1111 1 3899999  9998    778899999999999999999999653211  


Q ss_pred             eE--EEeCCCcceEEEeeecCccccccCceeEEE-ecCCceEEEeeccccC
Q 047191          191 KF--VISSSTLKQCTLWVETEGEMFTQAEYKVRI-TAPSLERLHIMSDIFG  238 (341)
Q Consensus       191 ~l--~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~-~~p~L~~l~~~~~~~~  238 (341)
                      .+  ....+.|+.|.++.||...    +...+.+ ..|.|.+|+..|+..+
T Consensus       330 ~~~~~~kf~~L~~lSlsRCY~i~----p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  330 CFQEFFKFNYLQHLSLSRCYDII----PETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             HHHHHHhcchheeeehhhhcCCC----hHHeeeeccCcceEEEEeccccCc
Confidence            11  2255778999999875432    2333443 5788888888887654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.92  E-value=0.00025  Score=67.97  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=26.8

Q ss_pred             CCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191          301 ALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       301 ~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .+++|++|+|..+ ..+...+..+.++||+|++|.+.+
T Consensus       293 ~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  293 RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            4567888888877 556777777788888888766543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.00038  Score=63.67  Aligned_cols=109  Identities=24%  Similarity=0.090  Sum_probs=69.1

Q ss_pred             cCcceEEEEeeeeeeccCCC---cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          123 SPSVEVLKLMSDFLLKVPAG---GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~---~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      .++|+.|+| +.-.+..+.+   ...++.||+|  +|..  ++..+++.++.+||.|+.|.+.+-.+......... -..
T Consensus       171 Lp~Le~LNl-s~Nrl~~~~~s~~~~~l~~lK~L--~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-i~~  246 (505)
T KOG3207|consen  171 LPSLENLNL-SSNRLSNFISSNTTLLLSHLKQL--VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-ILQ  246 (505)
T ss_pred             cccchhccc-ccccccCCccccchhhhhhhheE--EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-hhh
Confidence            577888888 6544443321   2257899999  9988  88999999999999999999987643211100111 234


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFG  238 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~  238 (341)
                      +|++|++++.....   .......-..|+|.-|.+..+...
T Consensus       247 ~L~~LdLs~N~li~---~~~~~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  247 TLQELDLSNNNLID---FDQGYKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             HHhhccccCCcccc---cccccccccccchhhhhccccCcc
Confidence            78888888832222   123344556777777777654433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.59  E-value=0.00097  Score=54.70  Aligned_cols=65  Identities=17%  Similarity=0.078  Sum_probs=32.4

Q ss_pred             HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc--CCChhHHHHHHhcCCCCCcEEEee
Q 047191          271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG--AIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~--~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      +...+++++.|.++.+.+.-+.  ....+..+++|+.|++..+  ......-..++..+|+|+.|+-..
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLN--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCC--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             hHHhCCcCCEEECcCCcCCChH--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            4457889999999887765432  1223336788999998877  222334456888899999887543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.71  E-value=0.0015  Score=65.10  Aligned_cols=152  Identities=16%  Similarity=0.127  Sum_probs=95.3

Q ss_pred             CccceeEEeeeec---CCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCC
Q 047191          172 PSLEELSIQAYLN---DEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNS  247 (341)
Q Consensus       172 p~Le~L~L~~c~~---~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~  247 (341)
                      .+|+.|++.+-..   .+..  .+.-..|+|++|.|.+   ..+.......+--+-|+|.+|+++|...... ...++.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~--kig~~LPsL~sL~i~~---~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPK--KIGTMLPSLRSLVISG---RQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHH--HHhhhCcccceEEecC---ceecchhHHHHhhccCccceeecCCCCccCcHHHhcccc
Confidence            5899999977422   1112  3444678999999988   2322222345556789999999999876653 4556666


Q ss_pred             eeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchh----hhcc-ccccCCCCCCCcccEEEEEEcCCChhHHHH
Q 047191          248 LTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVL----CALD-HAYHKWFPALSYLQHLEVAVGAIGWAVLPV  322 (341)
Q Consensus       248 L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~----~~~~-~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~  322 (341)
                      |+.+.+.-.     .|....+..-+-.+++++.|+++....    ..+. |..++  -.+|+|+.|+.+....+-+.+..
T Consensus       197 Lq~L~mrnL-----e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~--~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  197 LQVLSMRNL-----EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG--MVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HHHHhccCC-----CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc--ccCccccEEecCCcchhHHHHHH
Confidence            665544321     111111233445689999999985321    1221 22222  14778999998876677788888


Q ss_pred             HHhcCCCCCcEEE
Q 047191          323 ILSSSVHLQSLVL  335 (341)
Q Consensus       323 ll~~cp~L~~L~l  335 (341)
                      +++.=|+|+.+-.
T Consensus       270 ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  270 LLNSHPNLQQIAA  282 (699)
T ss_pred             HHHhCccHhhhhh
Confidence            8888899887653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.0011  Score=57.29  Aligned_cols=98  Identities=17%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             CceEEEeeccccCcee-ecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhcc-ccccCCCCCCC
Q 047191          226 SLERLHIMSDIFGKFV-VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALD-HAYHKWFPALS  303 (341)
Q Consensus       226 ~L~~l~~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~f~  303 (341)
                      +.+.|.++|+....+. ...+|.|+-+.+.+.....        ..-+..|++++.|.|.-+.+.-+. ...++   .+|
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss--------L~pl~rCtrLkElYLRkN~I~sldEL~YLk---nlp   88 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS--------LAPLQRCTRLKELYLRKNCIESLDELEYLK---NLP   88 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeecccccc--------chhHHHHHHHHHHHHHhcccccHHHHHHHh---cCc
Confidence            3445555555554443 3455656655555433322        445667788888877766554432 12233   667


Q ss_pred             cccEEEEEEc-C---CChhHHHHHHhcCCCCCcEE
Q 047191          304 YLQHLEVAVG-A---IGWAVLPVILSSSVHLQSLV  334 (341)
Q Consensus       304 ~L~~L~l~~~-~---~~~~~l~~ll~~cp~L~~L~  334 (341)
                      +|+.|.|..+ .   .+-+.-..+|+..|||++|+
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8999999887 2   23445567899999999987

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.47  E-value=0.008  Score=60.05  Aligned_cols=132  Identities=18%  Similarity=0.102  Sum_probs=65.1

Q ss_pred             CcceEEEEeeeeee-ccCCC--cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191          124 PSVEVLKLMSDFLL-KVPAG--GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST  198 (341)
Q Consensus       124 ~~L~~L~L~~~~~l-~~~~~--~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s  198 (341)
                      .+|++|++.+.-.+ ..++.  +.-||+|++|  ++.+  ...+++..+..++|+|..|+++++.-..+.    .|  + 
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL--~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~----GI--S-  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSL--VISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS----GI--S-  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceE--EecCceecchhHHHHhhccCccceeecCCCCccCcH----HH--h-
Confidence            45666666222222 12221  2236777777  6666  555556666667777777776666432111    00  1 


Q ss_pred             cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc-e---eecCCCCeeEEEEEEEeCccccCCCccc-hHHhh
Q 047191          199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK-F---VVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQ  273 (341)
Q Consensus       199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~-~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~  273 (341)
                                              ..++|+.|...+-.... .   .+-++.+|+.+++.-....... .-... ...-.
T Consensus       193 ------------------------~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~  247 (699)
T KOG3665|consen  193 ------------------------RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGM  247 (699)
T ss_pred             ------------------------ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcc
Confidence                                    24455555544333222 1   2334555666665432211111 00001 33345


Q ss_pred             cCCCceEEEEecchhh
Q 047191          274 QLNNTTSLTVSYGVLC  289 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~  289 (341)
                      .+|+++.|+.+++...
T Consensus       248 ~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDIN  263 (699)
T ss_pred             cCccccEEecCCcchh
Confidence            6899999999987653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.42  E-value=0.0038  Score=54.70  Aligned_cols=195  Identities=16%  Similarity=0.140  Sum_probs=115.1

Q ss_pred             ceEEEEeeeeeeccCC---C-cccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeec-CCCCceeEEEeCC
Q 047191          126 VEVLKLMSDFLLKVPA---G-GTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLN-DEGPTTKFVISSS  197 (341)
Q Consensus       126 L~~L~L~~~~~l~~~~---~-~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~-~~~~~~~l~i~~~  197 (341)
                      +.-|.+ .++.++...   . ......++.|  .|.+   .++..+..++...|.|+.|+|..-.- ..++  .+.....
T Consensus        47 ~ellvl-n~~~id~~gd~~~~~~~~~~v~el--DL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~  121 (418)
T KOG2982|consen   47 LELLVL-NGSIIDNEGDVMLFGSSVTDVKEL--DLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLK  121 (418)
T ss_pred             hhhhee-cCCCCCcchhHHHHHHHhhhhhhh--hcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCccccc
Confidence            334555 556554321   1 2246789999  9988   56688999999999999999976432 1223  3334556


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCcee-----ecCC-CCeeEEEEEEEeCccccCCCccc-hH
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV-----VHDL-NSLTDVILDIVYGEWSRVDPNRS-IQ  270 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~-----~~~~-~~L~~~~l~~~~~~~~~~~~~~~-~~  270 (341)
                      +|+.|.+.+   .+..+.......-+.|.+..|++++.....+.     .+.. +.+.++...-  .....+-   + .+
T Consensus       122 nl~~lVLNg---T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~--c~~~~w~---~~~~  193 (418)
T KOG2982|consen  122 NLRVLVLNG---TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLP--CLEQLWL---NKNK  193 (418)
T ss_pred             ceEEEEEcC---CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCC--cHHHHHH---HHHh
Confidence            788888887   34434445566667788888877765322111     1110 1111111110  0000111   2 67


Q ss_pred             HhhcCCCceEEEEecchhhhccc-cccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191          271 LLQQLNNTTSLTVSYGVLCALDH-AYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       271 ~l~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      +-+-++|+..+.++.+.++.... ...+   .||.+--|.|... -..|+++.. |...|.|..|.+.+
T Consensus       194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se---~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~  258 (418)
T KOG2982|consen  194 LSRIFPNVNSVFVCEGPLKTESSEKGSE---PFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSE  258 (418)
T ss_pred             HHhhcccchheeeecCcccchhhcccCC---CCCcchhhhhcccccccHHHHHH-HcCCchhheeeccC
Confidence            77889999999999988775532 2233   3444446777776 445666655 56677777776654

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.38  E-value=0.0058  Score=32.95  Aligned_cols=23  Identities=39%  Similarity=0.726  Sum_probs=19.1

Q ss_pred             chhhhhhhccC---CCcchHHHHHhcCC
Q 047191          148 NVKILTMQLES---PDNILTEKLFCSCP  172 (341)
Q Consensus       148 ~L~~L~~~L~~---~~~~~l~~ll~~cp  172 (341)
                      +||+|  +|..   .+++.+++++++||
T Consensus         1 sLKtL--~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTL--HLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEE--EeeEEEECChhHHHHhhccCc
Confidence            47888  8888   45568999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.21  E-value=0.0023  Score=52.56  Aligned_cols=56  Identities=30%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191          123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY  182 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c  182 (341)
                      ..+|+.|+| ++..+....+...+++|++|  ++.+  ++.-. ..+...||+|+.|.+.+-
T Consensus        41 l~~L~~L~L-s~N~I~~l~~l~~L~~L~~L--~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   41 LDKLEVLDL-SNNQITKLEGLPGLPRLKTL--DLSNNRISSIS-EGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             -TT--EEE--TTS--S--TT----TT--EE--E--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred             hcCCCEEEC-CCCCCccccCccChhhhhhc--ccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence            466788888 66666544455667888888  7777  44321 123346788888888654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.02  E-value=0.0064  Score=53.89  Aligned_cols=38  Identities=37%  Similarity=0.594  Sum_probs=35.0

Q ss_pred             CCCccCCCC----hHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191            3 PAYRINALP----DSVLCHILSYLPTKNVVATSILARRWKLV   40 (341)
Q Consensus         3 ~~d~is~LP----d~iL~~Ils~Lp~~~~~~~s~vskrWr~l   40 (341)
                      ..|-|..||    |+|-++|||+|+..++.++-.|||+|+++
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            357789999    99999999999999999999999999854

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.99  E-value=0.0063  Score=53.39  Aligned_cols=58  Identities=12%  Similarity=0.146  Sum_probs=39.1

Q ss_pred             cCcceEEEEeeeee-------e--cc-CCCcccCCchhhhhhhccCCCcchHHHHHhcCCccceeEEeeee
Q 047191          123 SPSVEVLKLMSDFL-------L--KV-PAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       123 ~~~L~~L~L~~~~~-------l--~~-~~~~~~~~~L~~L~~~L~~~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      |..|+.|.. +...       +  .. +-....|++|+++  .+...+.+.+..+...-|.|+++.+++..
T Consensus       181 ~~~l~~l~v-s~~~~p~~~sni~~~~l~f~l~~f~~l~~~--~~s~~~~~~i~~~~~~kptl~t~~v~~s~  248 (490)
T KOG1259|consen  181 CTQLVALVV-TPVKDPIDRSNIIPNRLSFNLNAFRNLKTL--KFSALSTENIVDIELLKPTLQTICVHNTT  248 (490)
T ss_pred             hhheeEEEe-cCCCCCCccccccccccccchHHhhhhhee--eeeccchhheeceeecCchhheeeeeccc
Confidence            677888887 4211       1  11 1123347888888  77777777888888888889988888763

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.90  E-value=0.041  Score=55.62  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=14.8

Q ss_pred             cceEEEEeeeeeeccCCCcccCCchhhhhhhccC
Q 047191          125 SVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES  158 (341)
Q Consensus       125 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~  158 (341)
                      .|+.|.+ .+..+...|.  ..++|++|  .|.+
T Consensus       223 ~L~~L~L-~~N~Lt~LP~--lp~~Lk~L--dLs~  251 (788)
T PRK15387        223 HITTLVI-PDNNLTSLPA--LPPELRTL--EVSG  251 (788)
T ss_pred             CCCEEEc-cCCcCCCCCC--CCCCCcEE--EecC
Confidence            5666666 4444433221  23566666  6655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.48  E-value=0.011  Score=39.32  Aligned_cols=55  Identities=27%  Similarity=0.382  Sum_probs=36.2

Q ss_pred             CcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191          124 PSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY  182 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c  182 (341)
                      ++|++|.+ +++.+...+  ...++++|++|  ++.+  ++.-. ...+.++|+|+.|.+.++
T Consensus         1 p~L~~L~l-~~n~l~~i~~~~f~~l~~L~~L--~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDL-SNNKLTEIPPDSFSNLPNLETL--DLSNNNLTSIP-PDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEE-TSSTESEECTTTTTTGTTESEE--EETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred             CcCcEEEC-CCCCCCccCHHHHcCCCCCCEe--EccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence            46788888 666654332  34567888888  8877  33211 234778888888888765

...

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.21  E-value=0.026  Score=49.72  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=29.6

Q ss_pred             cCCCChHHHHHHHc-----CCChhhhhhhhccccchHHh
Q 047191            7 INALPDSVLCHILS-----YLPTKNVVATSILARRWKLV   40 (341)
Q Consensus         7 is~LPd~iL~~Ils-----~Lp~~~~~~~s~vskrWr~l   40 (341)
                      |+.||||||.+||.     .|+.+++.++|.|||.|+..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            67899999999986     45679999999999999844

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.02  E-value=0.031  Score=51.24  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             cCCCChHHHHHHHcCCCh-hhhhhhhccccchHHhhcc
Q 047191            7 INALPDSVLCHILSYLPT-KNVVATSILARRWKLVWTS   43 (341)
Q Consensus         7 is~LPd~iL~~Ils~Lp~-~~~~~~s~vskrWr~lw~~   43 (341)
                      -++||+|+|..|..+||. -|.+|.+.|||.||..-..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            468999999999999985 7999999999999986543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=93.54  E-value=0.042  Score=55.52  Aligned_cols=96  Identities=19%  Similarity=0.123  Sum_probs=46.5

Q ss_pred             cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CC---------------cchHHHHHhcCCccceeEEeeeecC
Q 047191          123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PD---------------NILTEKLFCSCPSLEELSIQAYLND  185 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~---------------~~~l~~ll~~cp~Le~L~L~~c~~~  185 (341)
                      .++|++|+| ++..+...|..  .++|+.|  .|..  ++               ...+..+-..-|.|+.|++.++.-.
T Consensus       241 p~~Lk~LdL-s~N~LtsLP~l--p~sL~~L--~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        241 PPELRTLEV-SGNQLTSLPVL--PPGLLEL--SIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA  315 (788)
T ss_pred             CCCCcEEEe-cCCccCcccCc--cccccee--eccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccc
Confidence            488888888 65555332232  2455555  4444  11               1111111122367888888776443


Q ss_pred             CCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccc
Q 047191          186 EGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDI  236 (341)
Q Consensus       186 ~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~  236 (341)
                      .++  .   ..++|+.|.+.+|   .     ...+.--.++|+.|.+++..
T Consensus       316 ~Lp--~---lp~~L~~L~Ls~N---~-----L~~LP~lp~~Lq~LdLS~N~  353 (788)
T PRK15387        316 SLP--A---LPSELCKLWAYNN---Q-----LTSLPTLPSGLQELSVSDNQ  353 (788)
T ss_pred             cCC--C---CcccccccccccC---c-----cccccccccccceEecCCCc
Confidence            322  1   1235666766663   1     11111112357777776543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.53  E-value=0.046  Score=55.27  Aligned_cols=34  Identities=12%  Similarity=0.135  Sum_probs=21.0

Q ss_pred             cccEEEEEEc-CCC-hhHHHHHHhcCCCCCcEEEee
Q 047191          304 YLQHLEVAVG-AIG-WAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       304 ~L~~L~l~~~-~~~-~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      +|+.|++..+ -.. ...+..+...+|++..|.+.+
T Consensus       389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~  424 (754)
T PRK15370        389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEY  424 (754)
T ss_pred             HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeC
Confidence            4666666665 112 234566777778888887765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.05  E-value=0.074  Score=53.84  Aligned_cols=71  Identities=20%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcce
Q 047191          124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQ  201 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~  201 (341)
                      +.|+.|.| ++..+...|.. -+++|++|  +|.+  ++.  +..-+  .+.|+.|.|.+|.-..++  . .+ .++|+.
T Consensus       199 ~~L~~L~L-s~N~LtsLP~~-l~~nL~~L--~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~~LP--~-~l-~s~L~~  266 (754)
T PRK15370        199 EQITTLIL-DNNELKSLPEN-LQGNIKTL--YANSNQLTS--IPATL--PDTIQEMELSINRITELP--E-RL-PSALQS  266 (754)
T ss_pred             cCCcEEEe-cCCCCCcCChh-hccCCCEE--ECCCCcccc--CChhh--hccccEEECcCCccCcCC--h-hH-hCCCCE
Confidence            45777777 55555433222 23577777  7766  321  11111  246777777776543222  1 11 235777


Q ss_pred             EEEee
Q 047191          202 CTLWV  206 (341)
Q Consensus       202 L~i~~  206 (341)
                      |.+.+
T Consensus       267 L~Ls~  271 (754)
T PRK15370        267 LDLFH  271 (754)
T ss_pred             EECcC
Confidence            77665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=92.16  E-value=0.14  Score=33.82  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=18.8

Q ss_pred             HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191          270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV  312 (341)
Q Consensus       270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~  312 (341)
                      ..++++++++.|.++.+.++.+..   ..+..+++|++|++..
T Consensus        19 ~~f~~l~~L~~L~l~~N~l~~i~~---~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen   19 DSFSNLPNLETLDLSNNNLTSIPP---DAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTTTTGTTESEEEETSSSESEEET---TTTTTSTTESEEEETS
T ss_pred             HHHcCCCCCCEeEccCCccCccCH---HHHcCCCCCCEEeCcC
Confidence            344455666666665554433211   1122444555555543

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.79  E-value=0.089  Score=45.79  Aligned_cols=156  Identities=13%  Similarity=-0.012  Sum_probs=79.1

Q ss_pred             chHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-
Q 047191          162 ILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-  240 (341)
Q Consensus       162 ~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-  240 (341)
                      +.+..+++....|++|.+.+|.-....  --+|. .-|.+|             +..+-.-+.|.|+++..-....... 
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~a--G~rig-kal~~l-------------a~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIA--GGRIG-KALFHL-------------AYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccc--hhHHH-HHHHHH-------------HHHhhhccCCCceEEEeccchhccCc
Confidence            445555777777777777777432111  00000 001111             2233445688888887643222111 


Q ss_pred             ------eecCCCCeeEEEEEEEeCccccCCCccc--hHHhhcCCCceEEEEecchhhhcccc-ccCCCCCCCcccEEEEE
Q 047191          241 ------VVHDLNSLTDVILDIVYGEWSRVDPNRS--IQLLQQLNNTTSLTVSYGVLCALDHA-YHKWFPALSYLQHLEVA  311 (341)
Q Consensus       241 ------~~~~~~~L~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~f~~L~~L~l~  311 (341)
                            .++....|.++.+.-........   ..  .-=+..+.+++.|.|..+++...... -...++..++|++|.+.
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv---~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGV---TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchh---HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence                  13333456666554221111100   01  11235678999999998876433211 12345678889999999


Q ss_pred             EcCCChhHHHHHHhc-----CCCCCcEEEe
Q 047191          312 VGAIGWAVLPVILSS-----SVHLQSLVLR  336 (341)
Q Consensus       312 ~~~~~~~~l~~ll~~-----cp~L~~L~l~  336 (341)
                      .|-...++...+++.     .|+|..|-.+
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~  280 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGD  280 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccc
Confidence            982222333333333     2888877654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=90.43  E-value=0.12  Score=31.75  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=13.4

Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      +++.|.++.+.++.+.. .   +..+++|+.|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~---l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-E---LSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-H---GTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCc-h---HhCCCCCCEEEecCC
Confidence            44555555544432210 0   224445555555444

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=90.23  E-value=0.0023  Score=61.44  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=17.3

Q ss_pred             CCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEe
Q 047191          301 ALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLR  336 (341)
Q Consensus       301 ~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~  336 (341)
                      .+..|++|.|..+ -++...-+++|   |.|+.|+++
T Consensus       337 RC~kL~kL~L~~NrLiTLPeaIHlL---~~l~vLDlr  370 (1255)
T KOG0444|consen  337 RCVKLQKLKLDHNRLITLPEAIHLL---PDLKVLDLR  370 (1255)
T ss_pred             hhHHHHHhcccccceeechhhhhhc---CCcceeecc
Confidence            4556667766665 33433333333   556666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=90.14  E-value=0.18  Score=44.57  Aligned_cols=56  Identities=13%  Similarity=0.060  Sum_probs=37.2

Q ss_pred             CchhhhhhhccC----CCc-----chHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEee
Q 047191          147 PNVKILTMQLES----PDN-----ILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWV  206 (341)
Q Consensus       147 ~~L~~L~~~L~~----~~~-----~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~  206 (341)
                      .+|+.|  ....    ++.     .-+..=++.+.+|..+.++.|....++  .+...-|+|..+.+..
T Consensus       182 ~~l~~l--~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~--~~~~~kptl~t~~v~~  246 (490)
T KOG1259|consen  182 TQLVAL--VVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV--DIELLKPTLQTICVHN  246 (490)
T ss_pred             hheeEE--EecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee--ceeecCchhheeeeec
Confidence            566666  6655    222     223333567888888888888776666  6666778888887776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=88.29  E-value=0.22  Score=30.58  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=17.3

Q ss_pred             chhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          148 NVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       148 ~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      +|++|  ++.+  +++  +...++.||+|+.|++.++.
T Consensus         2 ~L~~L--~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEEL--DLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEE--EETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             cceEE--EccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            45555  5555  332  33335667777777776664

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=87.99  E-value=0.026  Score=56.67  Aligned_cols=177  Identities=17%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             cccccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--C---Cc-------chHHHHHhcCCccceeE-----
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--P---DN-------ILTEKLFCSCPSLEELS-----  178 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~---~~-------~~l~~ll~~cp~Le~L~-----  178 (341)
                      |..++...+|++|.. ..+.+...+ -..++..|++|  .|+.  +   .+       ..+..+-..|-.|+.+-     
T Consensus       280 p~ri~~~~~L~~l~~-~~nel~yip~~le~~~sL~tL--dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~  356 (1081)
T KOG0618|consen  280 PLRISRITSLVSLSA-AYNELEYIPPFLEGLKSLRTL--DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN  356 (1081)
T ss_pred             HHHHhhhhhHHHHHh-hhhhhhhCCCcccccceeeee--eehhccccccchHHHhhhhHHHHHHhhhhccccccccccch
Confidence            556666666777776 666554433 33447788888  7777  1   11       11222222333333333     


Q ss_pred             ---------Eeeee-cCCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCC
Q 047191          179 ---------IQAYL-NDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLN  246 (341)
Q Consensus       179 ---------L~~c~-~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~  246 (341)
                               +.+-. ++..-  .+-....+||.|++...+-..+    ..+..-..+.||.|.++|.....+  .+.+++
T Consensus       357 ~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyNrL~~f----pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~  430 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYNRLNSF----PASKLRKLEELEELNLSGNKLTTLPDTVANLG  430 (1081)
T ss_pred             hhHHHHHHHHhcCcccccch--hhhccccceeeeeecccccccC----CHHHHhchHHhHHHhcccchhhhhhHHHHhhh
Confidence                     22211 11111  1223455677777666210111    112222345666677766554322  233444


Q ss_pred             CeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          247 SLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       247 ~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      +|..+.-+...-.        ...-+..++.++.++++.+.++-+..+.  ..|. ++|++|+++.+
T Consensus       431 ~L~tL~ahsN~l~--------~fPe~~~l~qL~~lDlS~N~L~~~~l~~--~~p~-p~LkyLdlSGN  486 (1081)
T KOG0618|consen  431 RLHTLRAHSNQLL--------SFPELAQLPQLKVLDLSCNNLSEVTLPE--ALPS-PNLKYLDLSGN  486 (1081)
T ss_pred             hhHHHhhcCCcee--------echhhhhcCcceEEecccchhhhhhhhh--hCCC-cccceeeccCC
Confidence            4443322110000        0223567788888888887776442221  2232 68999999887

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=87.69  E-value=0.68  Score=24.81  Aligned_cols=25  Identities=20%  Similarity=0.062  Sum_probs=19.3

Q ss_pred             cccEEEEEEc-CCChhHHHHHHhcCC
Q 047191          304 YLQHLEVAVG-AIGWAVLPVILSSSV  328 (341)
Q Consensus       304 ~L~~L~l~~~-~~~~~~l~~ll~~cp  328 (341)
                      +||.|.|... ..+...+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            3778888776 455667889999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=87.55  E-value=0.67  Score=38.70  Aligned_cols=56  Identities=25%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             cCcceEEEEeeeeee-ccCCCcc-cCCchhhhhhhccC--C-CcchHHHHHhcCCccceeEEeee
Q 047191          123 SPSVEVLKLMSDFLL-KVPAGGT-CFPNVKILTMQLES--P-DNILTEKLFCSCPSLEELSIQAY  182 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l-~~~~~~~-~~~~L~~L~~~L~~--~-~~~~l~~ll~~cp~Le~L~L~~c  182 (341)
                      .+.|..|.| ++-.+ ...+... -+|+|++|  .|.+  + .-++++. +++||.|++|.+.+-
T Consensus        63 l~rL~tLll-~nNrIt~I~p~L~~~~p~l~~L--~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   63 LPRLHTLLL-NNNRITRIDPDLDTFLPNLKTL--ILTNNSIQELGDLDP-LASCPKLEYLTLLGN  123 (233)
T ss_pred             ccccceEEe-cCCcceeeccchhhhccccceE--EecCcchhhhhhcch-hccCCccceeeecCC
Confidence            456666777 43332 2222222 35677777  6655  2 2233333 566777777777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=87.39  E-value=1  Score=42.14  Aligned_cols=69  Identities=10%  Similarity=0.114  Sum_probs=40.2

Q ss_pred             cCcceEEEEeeeeeeccCCCcccCC-chhhhhhhccC-CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191          123 SPSVEVLKLMSDFLLKVPAGGTCFP-NVKILTMQLES-PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK  200 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~~~~~~-~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~  200 (341)
                      |..+++|.+ ++|.+...|   .+| +|+.|  .+.+ ..-..+...+  .+.|+.|.+.+|...  .  .+   .++|+
T Consensus        51 ~~~l~~L~I-s~c~L~sLP---~LP~sLtsL--~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L--~--sL---P~sLe  115 (426)
T PRK15386         51 ARASGRLYI-KDCDIESLP---VLPNELTEI--TIENCNNLTTLPGSI--PEGLEKLTVCHCPEI--S--GL---PESVR  115 (426)
T ss_pred             hcCCCEEEe-CCCCCcccC---CCCCCCcEE--EccCCCCcccCCchh--hhhhhheEccCcccc--c--cc---ccccc
Confidence            567888888 777665443   233 68888  7766 2212221122  367888888888542  2  11   24577


Q ss_pred             eEEEee
Q 047191          201 QCTLWV  206 (341)
Q Consensus       201 ~L~i~~  206 (341)
                      .|.+..
T Consensus       116 ~L~L~~  121 (426)
T PRK15386        116 SLEIKG  121 (426)
T ss_pred             eEEeCC
Confidence            777654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.23  E-value=0.38  Score=42.60  Aligned_cols=83  Identities=13%  Similarity=0.100  Sum_probs=48.5

Q ss_pred             CchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeec---CCCCceeEEEeCCCcceEEEeeecCccccccCceeE
Q 047191          147 PNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLN---DEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKV  220 (341)
Q Consensus       147 ~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~---~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~  220 (341)
                      ..+.-|  ++.+   .+.+....+-+.|..+++|+|.+-.-   .++.  ++.-..|.|+.|++++..   . .+.....
T Consensus        45 ra~ell--vln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~--~ile~lP~l~~LNls~N~---L-~s~I~~l  116 (418)
T KOG2982|consen   45 RALELL--VLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG--AILEQLPALTTLNLSCNS---L-SSDIKSL  116 (418)
T ss_pred             cchhhh--eecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH--HHHhcCccceEeeccCCc---C-CCccccC
Confidence            456677  7777   45567777788899999999977421   1122  344456777777777621   0 0111222


Q ss_pred             EEecCCceEEEeecccc
Q 047191          221 RITAPSLERLHIMSDIF  237 (341)
Q Consensus       221 ~~~~p~L~~l~~~~~~~  237 (341)
                      ..-..+|+++.+.|...
T Consensus       117 p~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen  117 PLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             cccccceEEEEEcCCCC
Confidence            22233677777766543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.31  E-value=0.32  Score=47.32  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.8

Q ss_pred             CCCCccCCCChHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191            2 VPAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLV   40 (341)
Q Consensus         2 ~~~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l   40 (341)
                      ...|.|+.||-|+..+|+++|+.++..+.+.||+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            346789999999999999999999999999999999855

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=84.96  E-value=0.036  Score=44.85  Aligned_cols=61  Identities=21%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccCCCcchHHHHHhcCCccceeEEee
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQA  181 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~~~~~~l~~ll~~cp~Le~L~L~~  181 (341)
                      .+|..+..++|.|+++....++|....+.+|+.|  ++..-.-+.+-.-+++.|+|+.|++..
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevl--n~~nnqie~lp~~issl~klr~lnvgm   88 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVL--NLSNNQIEELPTSISSLPKLRILNVGM   88 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhh--hcccchhhhcChhhhhchhhhheecch
Confidence            3556667778888334444556566677888888  776611122222366777887777753

>PF13013 F-box-like_2: F-box-like domain

Probab=84.64  E-value=0.55  Score=35.13  Aligned_cols=30  Identities=27%  Similarity=0.272  Sum_probs=26.2

Q ss_pred             ccCCCChHHHHHHHcCCChhhhhhhhcccc
Q 047191            6 RINALPDSVLCHILSYLPTKNVVATSILAR   35 (341)
Q Consensus         6 ~is~LPd~iL~~Ils~Lp~~~~~~~s~vsk   35 (341)
                      .+.+||+|++..|+.+-...+.......++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            377899999999999999998887777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.55  E-value=0.43  Score=41.26  Aligned_cols=39  Identities=13%  Similarity=-0.032  Sum_probs=19.1

Q ss_pred             cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      .++++|.|.++.+...+...+... +-++|+|++|+++.+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN  101 (260)
T ss_pred             CcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC
Confidence            455666666666544332211100 013356666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=82.78  E-value=0.76  Score=38.37  Aligned_cols=69  Identities=17%  Similarity=0.068  Sum_probs=47.1

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC--CChhHHHHHHhcCCCCCcEEEeeee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA--IGWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~--~~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                      -.+..-+++++.|.+.++.++-+.  +...+..+|.|+.|.+..+.  .....=.+++-..|+|+.|++.++.
T Consensus        81 p~L~~~~p~l~~L~LtnNsi~~l~--dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   81 PDLDTFLPNLKTLILTNNSIQELG--DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cchhhhccccceEEecCcchhhhh--hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            445566788999999998887653  22223367789999888872  2222334567778999999988764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=82.73  E-value=0.55  Score=43.88  Aligned_cols=165  Identities=17%  Similarity=0.186  Sum_probs=93.2

Q ss_pred             cCcceEEEEeeeeeeccCCCccc-C-CchhhhhhhccCCCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191          123 SPSVEVLKLMSDFLLKVPAGGTC-F-PNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK  200 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~~~~-~-~~L~~L~~~L~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~  200 (341)
                      .+.++.|.+ .+-.+...+.... + ++|+.|  ++..-.-..+..-+..+|.|+.|.+.++.-....  ......+.|+
T Consensus       115 ~~~l~~L~l-~~n~i~~i~~~~~~~~~nL~~L--~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~  189 (394)
T COG4886         115 LTNLTSLDL-DNNNITDIPPLIGLLKSNLKEL--DLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLN  189 (394)
T ss_pred             ccceeEEec-CCcccccCccccccchhhcccc--cccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhh
Confidence            356888888 6544433323333 3 289999  8766222222234778999999999999765444  3333677899


Q ss_pred             eEEEeeecCccccccCceeEEE--ecCC-ceEEEeeccc-cCc-eeecCCCCeeEEEEEEEeCccccCCCccc-hHHhhc
Q 047191          201 QCTLWVETEGEMFTQAEYKVRI--TAPS-LERLHIMSDI-FGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQ  274 (341)
Q Consensus       201 ~L~i~~c~~~~~~~~~~~~~~~--~~p~-L~~l~~~~~~-~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~  274 (341)
                      .|.+++.        ....+..  ..++ |+++.+.+.. ... ..+.+...+....+.-     .+..   . ...+..
T Consensus       190 ~L~ls~N--------~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-----n~~~---~~~~~~~~  253 (394)
T COG4886         190 NLDLSGN--------KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-----NKLE---DLPESIGN  253 (394)
T ss_pred             heeccCC--------ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-----ceee---eccchhcc
Confidence            9988882        2333333  2444 8888776652 111 1223333333222110     0000   0 255667


Q ss_pred             CCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          275 LNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       275 ~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      +++++.|.++.+.+.-+..     +..+.+|++|.+...
T Consensus       254 l~~l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~s~n  287 (394)
T COG4886         254 LSNLETLDLSNNQISSISS-----LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccceecccccccccccc-----ccccCccCEEeccCc
Confidence            7778888888766543322     335667888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=82.27  E-value=0.96  Score=39.62  Aligned_cols=198  Identities=17%  Similarity=0.132  Sum_probs=102.0

Q ss_pred             cCcceEEEEeeeeeeccCC------CcccCCchhhhhhhccC-CCc----------chHHHHHhcCCccceeEEeeeecC
Q 047191          123 SPSVEVLKLMSDFLLKVPA------GGTCFPNVKILTMQLES-PDN----------ILTEKLFCSCPSLEELSIQAYLND  185 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~~~L~~-~~~----------~~l~~ll~~cp~Le~L~L~~c~~~  185 (341)
                      ..+++.+.| ++-.+....      ...+-.+|+..  ++.+ .+.          ..+...+..||.|+..+|++--..
T Consensus        29 ~d~~~evdL-SGNtigtEA~e~l~~~ia~~~~L~vv--nfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          29 MDELVEVDL-SGNTIGTEAMEELCNVIANVRNLRVV--NFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             hcceeEEec-cCCcccHHHHHHHHHHHhhhcceeEe--ehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            456788888 655443211      11123455555  5555 221          234455678999999888774321


Q ss_pred             -CCCce--eEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCeeEEEEEEEeCcccc
Q 047191          186 -EGPTT--KFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSR  262 (341)
Q Consensus       186 -~~~~~--~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~  262 (341)
                       ..+++  .+--++..|++|.+++|   ++--.+...+.   ..|-.|.+..      ...+.|.|+.+...-     ++
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~Nn---GlGp~aG~rig---kal~~la~nK------Kaa~kp~Le~vicgr-----NR  168 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNN---GLGPIAGGRIG---KALFHLAYNK------KAADKPKLEVVICGR-----NR  168 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecC---CCCccchhHHH---HHHHHHHHHh------hhccCCCceEEEecc-----ch
Confidence             11100  22224455777777773   21000111111   1111111110      123456666554321     12


Q ss_pred             CCCcc--c-hHHhhcCCCceEEEEecchhhhcc--ccccCCCCCCCcccEEEEEEc---CCChhHHHHHHhcCCCCCcEE
Q 047191          263 VDPNR--S-IQLLQQLNNTTSLTVSYGVLCALD--HAYHKWFPALSYLQHLEVAVG---AIGWAVLPVILSSSVHLQSLV  334 (341)
Q Consensus       263 ~~~~~--~-~~~l~~~~~l~~L~l~~~~~~~~~--~~~~~~~~~f~~L~~L~l~~~---~~~~~~l~~ll~~cp~L~~L~  334 (341)
                      +....  - ...++.-.+++.+.+.-+++.--.  ..-...+.++++|+.|+|..+   ..+...+...+..-|+|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            22111  1 556666689999999877753110  011122447889999999997   233456677777779999988


Q ss_pred             Eeeeee
Q 047191          335 LRKVII  340 (341)
Q Consensus       335 l~~~~~  340 (341)
                      +.+.-+
T Consensus       249 lnDCll  254 (388)
T COG5238         249 LNDCLL  254 (388)
T ss_pred             ccchhh
Confidence            876544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=81.67  E-value=1.4  Score=39.84  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=25.5

Q ss_pred             CCcccEEEEEEcC---CChhHHHHHHhcCCCCCcEEEee
Q 047191          302 LSYLQHLEVAVGA---IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       302 f~~L~~L~l~~~~---~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .++|+.+.+..+.   .+...+..=+..||.||+|++.+
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D  222 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD  222 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc
Confidence            4578888888772   23445666678888888888876

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.50  E-value=0.51  Score=39.32  Aligned_cols=37  Identities=24%  Similarity=0.158  Sum_probs=26.3

Q ss_pred             CCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191          301 ALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       301 ~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      .+++|+.|+|+.| .++..++.+ |...+||+.|+|.++
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDL  186 (221)
T ss_pred             cccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCc
Confidence            5677888888877 777777766 445677777777654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=81.26  E-value=0.038  Score=53.42  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=21.0

Q ss_pred             CCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeee
Q 047191          301 ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       301 ~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      .+.||..++++.+  +...+..-+=..++|+.|.+++=
T Consensus       220 ~l~NL~dvDlS~N--~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  220 DLHNLRDVDLSEN--NLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             hhhhhhhcccccc--CCCcchHHHhhhhhhheeccCcC
Confidence            3556666666653  33333444455678888877763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=80.18  E-value=0.32  Score=48.17  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=35.3

Q ss_pred             CCCCE-EEEEEEeecCCCc---hhHHHHHHHHhcc--cccc----cccc-cccccccCcceEEEEeeeeeecc
Q 047191           78 GTQPM-NITIFFMHCSKLL---GVMLGRLNYILTR--ITAL----SCLC-QIELYASPSVEVLKLMSDFLLKV  139 (341)
Q Consensus        78 ~~~~i-~l~l~~~~~~~~~---~~~~~wl~~~~~~--l~~L----~~~~-p~~~~~~~~L~~L~L~~~~~l~~  139 (341)
                      ...+. .|.... ....+.   ..+...++.+-..  ++-+    ..++ |..+|....|++|+| .+|.+..
T Consensus        53 ~g~~~~~f~a~~-s~~ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LEl-rg~~L~~  123 (1096)
T KOG1859|consen   53 SGAPVDYFRAYV-SDNADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLEL-RGCDLST  123 (1096)
T ss_pred             CCCCCceeEEec-CCcccchHHHHHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEe-cCcchhh
Confidence            34577 887777 433322   2233333333322  2322    1233 888999999999999 8887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-04

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 3  PAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLV------WTSL 44
          P    ++LPD +L  I S L    ++  S + +RW  +      W +L
Sbjct: 5  PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.88
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.63
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.59
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.5
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.44
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.37
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.3
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.3
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.16
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.13
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.01
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.01
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.98
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.98
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.97
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.89
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.81
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.62
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.59
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.5
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.47
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.4
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.31
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.29
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.25
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.11
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.99
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	96.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.97
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	96.77
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.24
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.03
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	95.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.51
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.01
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.01
3e6j_A	229	Variable lymphocyte receptor diversity region; var	94.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	94.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	94.15
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.03
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	94.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	92.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	92.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	92.43
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	90.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	90.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	89.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	88.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	87.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	87.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	86.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	85.71
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	83.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	83.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	83.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	82.32

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=2.4e-20  Score=181.82  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=84.3

Q ss_pred             CCCccCCCChHHHHHHHcCCC-hhhhhhhhccccchHHhhc-cCceeEeecCCCCCCCCCCCCCcchHHHHHHHHhcCCC
Q 047191            3 PAYRINALPDSVLCHILSYLP-TKNVVATSILARRWKLVWT-SLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQ   80 (341)
Q Consensus         3 ~~d~is~LPd~iL~~Ils~Lp-~~~~~~~s~vskrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~   80 (341)
                      ..|++++|||||+.+||+||| .+|+++++.|||||+++.. ....+.+.....           ..-.    ..+.+-+
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~-----------~~~~----~~~~~~~   66 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYA-----------VSPA----TVIRRFP   66 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTS-----------SCHH----HHHHHCT
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccc-----------cCHH----HHHhhCC
Confidence            358999999999999999999 9999999999999998832 222344332111           0011    1222335


Q ss_pred             CE-EEEEEEeecC---------CCchhHHHHHHHHhcc---cccccccc-------ccccc-ccCcceEEEEeeee-eec
Q 047191           81 PM-NITIFFMHCS---------KLLGVMLGRLNYILTR---ITALSCLC-------QIELY-ASPSVEVLKLMSDF-LLK  138 (341)
Q Consensus        81 ~i-~l~l~~~~~~---------~~~~~~~~wl~~~~~~---l~~L~~~~-------p~~~~-~~~~L~~L~L~~~~-~l~  138 (341)
                      .+ ++.+.. ...         .+...+..|+..+...   +++|+..+       +..+. .|++|++|+| .+| .+.
T Consensus        67 ~L~~L~L~~-~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L-~~~~~~~  144 (594)
T 2p1m_B           67 KVRSVELKG-KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL-SSCEGFS  144 (594)
T ss_dssp             TCCEEEEEC-SCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE-ESCEEEE
T ss_pred             CceEEeccC-CCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC-CCcCCCC
Confidence            57 887776 321         1234566788776543   44443211       11222 3566666666 443 332


Q ss_pred             c--CCC-cccCCchhhhhhhccC--CCc---chHHHHHhcCCccceeEEeeee
Q 047191          139 V--PAG-GTCFPNVKILTMQLES--PDN---ILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       139 ~--~~~-~~~~~~L~~L~~~L~~--~~~---~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      .  .+. ..++++|++|  +|.+  +++   ..+..+...||+|+.|++.+|.
T Consensus       145 ~~~l~~~~~~~~~L~~L--~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKEL--DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HHHHHHHHHHCTTCCEE--ECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCCCEE--eCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            1  101 1245666666  6655  222   2344444456666666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.77  E-value=2.8e-19  Score=174.21  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=33.2

Q ss_pred             CCccC----CCChHHHHHHHcCC-ChhhhhhhhccccchHHhhccC
Q 047191            4 AYRIN----ALPDSVLCHILSYL-PTKNVVATSILARRWKLVWTSL   44 (341)
Q Consensus         4 ~d~is----~LPd~iL~~Ils~L-p~~~~~~~s~vskrWr~lw~~~   44 (341)
                      .|+++    +||||++.+||+|| +.+|+++++.|||||++++...
T Consensus         6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~   51 (592)
T 3ogk_B            6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSET   51 (592)
T ss_dssp             ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhcc
Confidence            56666    89999999999999 8999999999999999986443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=3e-19  Score=161.85  Aligned_cols=271  Identities=17%  Similarity=0.152  Sum_probs=149.8

Q ss_pred             CCccCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc---CceeEeecCCCCCCCCCCCCCcchHHHHHHHHhcCCC
Q 047191            4 AYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS---LQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQ   80 (341)
Q Consensus         4 ~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~   80 (341)
                      ...+++||||++.+||++|+.+|+++++.|||+|+++...   ...+++.....          .               
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~----------~---------------   60 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL----------H---------------   60 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC----------C---------------
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC----------C---------------
Confidence            3458999999999999999999999999999999998632   22334332221          0               


Q ss_pred             CEEEEEEEeecCCCchhHHHHHHHHhcc-cccccccc------cccccccCcceEEEEeeeeeecc---CCCcccCCchh
Q 047191           81 PMNITIFFMHCSKLLGVMLGRLNYILTR-ITALSCLC------QIELYASPSVEVLKLMSDFLLKV---PAGGTCFPNVK  150 (341)
Q Consensus        81 ~i~l~l~~~~~~~~~~~~~~wl~~~~~~-l~~L~~~~------p~~~~~~~~L~~L~L~~~~~l~~---~~~~~~~~~L~  150 (341)
                                        ...+...... ++.++...      +..++.+++|++|+| +++.+..   +.....+++|+
T Consensus        61 ------------------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           61 ------------------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDL-SNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             ------------------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEEC-TTCEECHHHHHHHHTTBCCCS
T ss_pred             ------------------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEc-cCCCcCHHHHHHHHhhCCCCC
Confidence                              0112222112 33332111      333556777788888 6555532   11234567788


Q ss_pred             hhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCC-ceeEEEeCCCcceEEEeeecCccccccCceeEEEecC-C
Q 047191          151 ILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGP-TTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAP-S  226 (341)
Q Consensus       151 ~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p-~  226 (341)
                      +|  +|.+  +++..... ++.||+|+.|++.+|...... .+.+.-..++|+.|.+.+|.....  ..........| +
T Consensus       122 ~L--~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~~  196 (336)
T 2ast_B          122 NL--SLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSET  196 (336)
T ss_dssp             EE--ECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTT
T ss_pred             EE--eCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcccC
Confidence            88  7777  55444443 566788888888777432100 001122456777777777422111  11122223466 7


Q ss_pred             ceEEEeeccc--cC--c--eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191          227 LERLHIMSDI--FG--K--FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP  300 (341)
Q Consensus       227 L~~l~~~~~~--~~--~--~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~  300 (341)
                      |++|.+.++.  ..  .  ..+..+++|+.+++.....    +... ....+..+++++.|.++.+. .+. ......+.
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----l~~~-~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~l~  269 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM----LKND-CFQEFFQLNYLQHLSLSRCY-DII-PETLLELG  269 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT----CCGG-GGGGGGGCTTCCEEECTTCT-TCC-GGGGGGGG
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc----CCHH-HHHHHhCCCCCCEeeCCCCC-CCC-HHHHHHHh
Confidence            8888877752  11  1  1244567777766543221    0000 03345667888888887653 111 11111233


Q ss_pred             CCCcccEEEEEEcCCChhHHHHHHhcCCCCC
Q 047191          301 ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQ  331 (341)
Q Consensus       301 ~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~  331 (341)
                      .+++|++|++..+ .....+..+.+++|.|+
T Consensus       270 ~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~  299 (336)
T 2ast_B          270 EIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  299 (336)
T ss_dssp             GCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             cCCCCCEEeccCc-cCHHHHHHHHhhCcceE
Confidence            5778888888766 44445555556666655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.88  E-value=3.8e-10  Score=109.62  Aligned_cols=185  Identities=12%  Similarity=0.047  Sum_probs=89.8

Q ss_pred             cCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEee----------eecCCCC-ceeEEEeCCCcceEEEeeecCccc
Q 047191          145 CFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQA----------YLNDEGP-TTKFVISSSTLKQCTLWVETEGEM  212 (341)
Q Consensus       145 ~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~----------c~~~~~~-~~~l~i~~~sL~~L~i~~c~~~~~  212 (341)
                      ++++|++|  .|.. +++..+..+..+||+|++|.+.+          |...... ...+.-.+++|+.|.+.. .....
T Consensus       316 ~~~~L~~L--~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~  392 (592)
T 3ogk_B          316 KCPNLEVL--ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITN  392 (592)
T ss_dssp             TCTTCCEE--EEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCH
T ss_pred             hCcCCCEE--eccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccH
Confidence            34555555  5554 55555555555555555555553          3221100 000111245566666632 11111


Q ss_pred             cccCceeEEEecCCceEEEeeccc----cCc--------eeecCCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCce
Q 047191          213 FTQAEYKVRITAPSLERLHIMSDI----FGK--------FVVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTT  279 (341)
Q Consensus       213 ~~~~~~~~~~~~p~L~~l~~~~~~----~~~--------~~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~  279 (341)
                        .....+.-.+|+|++|++.+..    ...        ..+.++++|+.+.+..+.+.   +... . ..+...+++++
T Consensus       393 --~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~---l~~~-~~~~~~~~~~~L~  466 (592)
T 3ogk_B          393 --ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG---LTDL-GLSYIGQYSPNVR  466 (592)
T ss_dssp             --HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG---CCHH-HHHHHHHSCTTCC
T ss_pred             --HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC---ccHH-HHHHHHHhCccce
Confidence              1112222235666666665321    000        01334566666665432210   0000 1 33444567777


Q ss_pred             EEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191          280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~~  340 (341)
                      .|.++.+.+.......  .+..+++|++|+|..+..+...+..+...+|+|+.|++.+-.|
T Consensus       467 ~L~L~~n~l~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          467 WMLLGYVGESDEGLME--FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             EEEECSCCSSHHHHHH--HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred             EeeccCCCCCHHHHHH--HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence            7777655432110010  0124567888888887556667777788888888888877554

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.85  E-value=1.4e-09  Score=70.00  Aligned_cols=39  Identities=26%  Similarity=0.410  Sum_probs=33.9

Q ss_pred             CCccCCCChHHHHHHHcCCChhhhhhhhccccchHHhhc
Q 047191            4 AYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWT   42 (341)
Q Consensus         4 ~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~   42 (341)
                      .+.++.||+|++.+||++||.+|+++++.|||+|+.+..
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            456899999999999999999999999999999997643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.81  E-value=9.4e-11  Score=105.69  Aligned_cols=225  Identities=16%  Similarity=0.106  Sum_probs=145.8

Q ss_pred             HHHHHHhcc--cccccccc----ccccccc--CcceEEEEeeeeeec-cCCCcccCCchhhhhhhccC--CCcchHHHHH
Q 047191          100 GRLNYILTR--ITALSCLC----QIELYAS--PSVEVLKLMSDFLLK-VPAGGTCFPNVKILTMQLES--PDNILTEKLF  168 (341)
Q Consensus       100 ~wl~~~~~~--l~~L~~~~----p~~~~~~--~~L~~L~L~~~~~l~-~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll  168 (341)
                      +|-..+...  ++.++...    |..+...  +.++.|++ .+..+. .++....+++|+.|  +|.+  +++..+..++
T Consensus        38 ~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l-~~n~l~~~~~~~~~~~~L~~L--~L~~~~l~~~~~~~~~  114 (336)
T 2ast_B           38 RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRC-PRSFMDQPLAEHFSPFRVQHM--DLSNSVIEVSTLHGIL  114 (336)
T ss_dssp             HHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEEC-TTCEECSCCCSCCCCBCCCEE--ECTTCEECHHHHHHHH
T ss_pred             HHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEc-CCccccccchhhccCCCCCEE--EccCCCcCHHHHHHHH
Confidence            455554433  55553221    3333333  78999999 665553 33345678999999  9999  7777799999


Q ss_pred             hcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeecc-ccCc----eeec
Q 047191          169 CSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSD-IFGK----FVVH  243 (341)
Q Consensus       169 ~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~-~~~~----~~~~  243 (341)
                      .+||+|+.|++.+|.-.+.....+ -..++|+.|++.+|.....  .....+...+|+|++|.+.++ ....    ..+.
T Consensus       115 ~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          115 SQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             hhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            999999999999985321000011 1368999999999632221  112222335799999999987 4432    1256


Q ss_pred             CCC-CeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecch-hhhccccccCCCCCCCcccEEEEEEc-CCChhH
Q 047191          244 DLN-SLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGV-LCALDHAYHKWFPALSYLQHLEVAVG-AIGWAV  319 (341)
Q Consensus       244 ~~~-~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~  319 (341)
                      .++ +|+.+++.....   .+... . ...+..+++++.|.++.+. +...   ....+..+++|++|++..+ ......
T Consensus       192 ~l~~~L~~L~l~~~~~---~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          192 HVSETITQLNLSGYRK---NLQKS-DLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             HSCTTCCEEECCSCGG---GSCHH-HHHHHHHHCTTCSEEECTTCTTCCGG---GGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             hcccCCCEEEeCCCcc---cCCHH-HHHHHHhhCCCCCEEeCCCCCcCCHH---HHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence            788 999988754310   01000 1 5567889999999998875 2211   1112336689999999988 444554


Q ss_pred             HHHHHhcCCCCCcEEEeee
Q 047191          320 LPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       320 l~~ll~~cp~L~~L~l~~~  338 (341)
                      + ..+..+|+|+.|++.+.
T Consensus       265 ~-~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          265 L-LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             G-GGGGGCTTCCEEECTTS
T ss_pred             H-HHHhcCCCCCEEeccCc
Confidence            4 34577999999998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.66  E-value=8.1e-09  Score=92.97  Aligned_cols=200  Identities=13%  Similarity=0.053  Sum_probs=124.6

Q ss_pred             cccccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV  193 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~  193 (341)
                      |..++.++.|++|+| ++..+...| ....+++|++|  +|.+  ++  .+..-+.++++|+.|++.+|...+.-+..+.
T Consensus        97 p~~l~~l~~L~~L~L-~~n~l~~lp~~~~~l~~L~~L--~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~  171 (328)
T 4fcg_A           97 PDQAFRLSHLQHMTI-DAAGLMELPDTMQQFAGLETL--TLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLA  171 (328)
T ss_dssp             CSCGGGGTTCSEEEE-ESSCCCCCCSCGGGGTTCSEE--EEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred             ChhhhhCCCCCEEEC-CCCCccchhHHHhccCCCCEE--ECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence            777888999999999 766554433 45678999999  9988  44  3344478899999999999855321111111


Q ss_pred             --------EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCCCeeEEEEEEEeCccccC
Q 047191          194 --------ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIVYGEWSRV  263 (341)
Q Consensus       194 --------i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~  263 (341)
                              -..++|+.|.+..|.-...     .......++|++|.+++.....+  .+..+++|+.+++.-....... 
T Consensus       172 ~~~~~~~~~~l~~L~~L~L~~n~l~~l-----p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~-  245 (328)
T 4fcg_A          172 STDASGEHQGLVNLQSLRLEWTGIRSL-----PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-  245 (328)
T ss_dssp             EEC-CCCEEESTTCCEEEEEEECCCCC-----CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-
T ss_pred             hccchhhhccCCCCCEEECcCCCcCcc-----hHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-
Confidence                    1378899999998521111     01112467899999987655432  3667788888776432111100 


Q ss_pred             CCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEe
Q 047191          264 DPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR  336 (341)
Q Consensus       264 ~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~  336 (341)
                           ...+..+++++.|.++.+.....   ....+..+++|++|+|..+. ....+..-+..+|+|+.+.+.
T Consensus       246 -----p~~~~~l~~L~~L~L~~n~~~~~---~p~~~~~l~~L~~L~L~~n~-~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          246 -----PPIFGGRAPLKRLILKDCSNLLT---LPLDIHRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             -----CCCTTCCCCCCEEECTTCTTCCB---CCTTGGGCTTCCEEECTTCT-TCCCCCGGGGGSCTTCEEECC
T ss_pred             -----HHHhcCCCCCCEEECCCCCchhh---cchhhhcCCCCCEEeCCCCC-chhhccHHHhhccCceEEeCC
Confidence                 23456778888888887543111   11123357788888888761 111233446778888887664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.63  E-value=3.2e-08  Score=89.79  Aligned_cols=204  Identities=13%  Similarity=0.060  Sum_probs=117.6

Q ss_pred             cccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCcee--E
Q 047191          119 ELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTK--F  192 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~--l  192 (341)
                      .+..+++|++|+| ++..+.. ++ ...++++|++|  +|.+  ++. .-...+.++++|+.|++.++.-..+.  .  .
T Consensus        71 ~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~  144 (353)
T 2z80_A           71 DLQRCVNLQALVL-TSNGINTIEEDSFSSLGSLEHL--DLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLG--ETSL  144 (353)
T ss_dssp             TTTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSC--SSCS
T ss_pred             HhccCCCCCEEEC-CCCccCccCHhhcCCCCCCCEE--ECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccC--chhh
Confidence            5666899999999 6555532 22 35568999999  9988  443 22344788999999999887543322  2  1


Q ss_pred             EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccch
Q 047191          193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSI  269 (341)
Q Consensus       193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~  269 (341)
                      .-..++|+.|.+..|.......   ....-..++|++|.+.+......   .+..+++|+++++.......  .    ..
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~----~~  215 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQ---RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL--L----LE  215 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEEC---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT--H----HH
T ss_pred             hccCCCCcEEECCCCccccccC---HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc--c----hh
Confidence            1245789999998842111000   00011357889999987654433   35667778877765322111  0    05


Q ss_pred             HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCC---hhHHHHHHhcCCCCCcEEEee
Q 047191          270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIG---WAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~---~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .+...+++++.|.++.+.+..+.............++.+.+......   ...+...+..+|+|+.|++.+
T Consensus       216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~  286 (353)
T 2z80_A          216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR  286 (353)
T ss_dssp             HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred             hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence            55667899999999987665432211111123344555555554222   223344455566666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.63  E-value=1.1e-08  Score=92.38  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=57.1

Q ss_pred             cCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCC
Q 047191          224 APSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPAL  302 (341)
Q Consensus       224 ~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f  302 (341)
                      .++|+.+.+.+...... .+..+++|+.+++.-....        ....+..+++++.|.++.+.+..+     ..+..+
T Consensus       198 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~--------~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l  264 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT--------DLSPLANLSQLTWLEIGTNQISDI-----NAVKDL  264 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--------CCGGGTTCTTCCEEECCSSCCCCC-----GGGTTC
T ss_pred             CCccceeecccCCCCCCchhhcCCcCCEEEccCCccC--------CCcchhcCCCCCEEECCCCccCCC-----hhHhcC
Confidence            45566666655433221 1455566666555321111        112266777888888877654332     123467


Q ss_pred             CcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191          303 SYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       303 ~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~~~  340 (341)
                      ++|++|++..+ -.+.    ..+..+|+|+.|++.+-.|
T Consensus       265 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI----SVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             TTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCC
T ss_pred             CCcCEEEccCCccCCC----hhhcCCCCCCEEECcCCcC
Confidence            78888888877 2222    2367889999998876443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.60  E-value=2.4e-09  Score=103.90  Aligned_cols=58  Identities=21%  Similarity=0.405  Sum_probs=35.0

Q ss_pred             cCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCCCcceEEEee
Q 047191          145 CFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSSTLKQCTLWV  206 (341)
Q Consensus       145 ~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~sL~~L~i~~  206 (341)
                      .+++|++|  +|.+  +++..+..++.+||+|+.|.+.+|.... ..  .+.-.+++|+.|.+..
T Consensus       287 ~~~~L~~L--~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          287 VCSRLTTL--NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE--VLASTCKDLRELRVFP  347 (594)
T ss_dssp             HHTTCCEE--ECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH--HHHHHCTTCCEEEEEC
T ss_pred             hhCCCCEE--EccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHH--HHHHhCCCCCEEEEec
Confidence            35777777  7766  6666677777777777777777763210 01  1111346677776643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.59  E-value=1.4e-08  Score=91.84  Aligned_cols=119  Identities=15%  Similarity=0.133  Sum_probs=61.2

Q ss_pred             ccccCcceEEEEeeee-eeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191          120 LYASPSVEVLKLMSDF-LLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS  196 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~-~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~  196 (341)
                      +..+++|+.|++ +++ ....++....+++|+.|  .+.+  +++..-   +..++.|+.|++.+|.-....  . .-..
T Consensus       128 ~~~l~~L~~L~l-~~n~~~~~~~~~~~l~~L~~L--~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~--~-~~~l  198 (347)
T 4fmz_A          128 LANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYL--TVTESKVKDVTP---IANLTDLYSLSLNYNQIEDIS--P-LASL  198 (347)
T ss_dssp             GTTCTTCCEEEC-TTCTTCCCCGGGTTCTTCCEE--ECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCG--G-GGGC
T ss_pred             hccCCceeEEEC-CCCCCcccccchhhCCCCcEE--EecCCCcCCchh---hccCCCCCEEEccCCcccccc--c-ccCC
Confidence            455778888888 544 34444345567777777  7776  322211   667777777777776443222  1 1123


Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEE
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVIL  253 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l  253 (341)
                      ++|+.|.+..|.-...     .. ....++|++|.+.+...... .+..+++|+.+++
T Consensus       199 ~~L~~L~l~~n~l~~~-----~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  250 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDI-----TP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI  250 (347)
T ss_dssp             TTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             CccceeecccCCCCCC-----ch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEEC
Confidence            4556665555311110     00 11345566666655443221 1445555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.54  E-value=4.1e-08  Score=88.33  Aligned_cols=197  Identities=14%  Similarity=0.089  Sum_probs=128.7

Q ss_pred             cCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          123 SPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ...++.|+| .+..+...| ....+++|++|  +|.+  ++  .+..-+..+++|+.|++.++.-..+.  .---..++|
T Consensus        80 ~~~l~~L~L-~~n~l~~lp~~l~~l~~L~~L--~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L  152 (328)
T 4fcg_A           80 QPGRVALEL-RSVPLPQFPDQAFRLSHLQHM--TIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALP--ASIASLNRL  152 (328)
T ss_dssp             STTCCEEEE-ESSCCSSCCSCGGGGTTCSEE--EEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCC--GGGGGCTTC
T ss_pred             ccceeEEEc-cCCCchhcChhhhhCCCCCEE--ECCCCCcc--chhHHHhccCCCCEEECCCCccccCc--HHHhcCcCC
Confidence            367899999 776665433 45568999999  9988  44  33344678999999999998654333  211245789


Q ss_pred             ceEEEeeecCccccccCcee-----EEEecCCceEEEeeccccCce--eecCCCCeeEEEEEEEeCccccCCCccchHHh
Q 047191          200 KQCTLWVETEGEMFTQAEYK-----VRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLL  272 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~-----~~~~~p~L~~l~~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l  272 (341)
                      +.|.+.+|...+........     ..-..++|++|.+.+.....+  .+..+++|+.+++.-.....  +     ...+
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l-----~~~l  225 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--L-----GPAI  225 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--C-----CGGG
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--C-----chhh
Confidence            99999997432221111110     012489999999998764432  36788899998876432211  1     2236


Q ss_pred             hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..+++++.|.++.+.....   ....+..+++|++|+|..+.. ...+..-+..+|+|+.|+|.+
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~---~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRN---YPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCB---CCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCCEEECTT
T ss_pred             ccCCCCCEEECcCCcchhh---hHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCCEEeCCC
Confidence            7889999999998554221   112344678999999988611 111222368899999999876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.54  E-value=2.7e-08  Score=88.68  Aligned_cols=186  Identities=12%  Similarity=0.102  Sum_probs=105.2

Q ss_pred             cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191          123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK  200 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~  200 (341)
                      .++|++|++ .++.+...+....+++|+.|  +|.+  +++-.-   +.++++|+.|.+.++.-....  .+ -..++|+
T Consensus        40 l~~L~~L~l-~~~~i~~l~~~~~l~~L~~L--~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~--~~-~~l~~L~  110 (308)
T 1h6u_A           40 LDGITTLSA-FGTGVTTIEGVQYLNNLIGL--ELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AI-AGLQSIK  110 (308)
T ss_dssp             HHTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG--GG-TTCTTCC
T ss_pred             cCCcCEEEe-eCCCccCchhhhccCCCCEE--EccCCcCCCChh---HccCCCCCEEEccCCcCCCch--hh-cCCCCCC
Confidence            456777777 66555544455567777777  7766  333221   667777777777776533221  11 1235677


Q ss_pred             eEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCce
Q 047191          201 QCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTT  279 (341)
Q Consensus       201 ~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~  279 (341)
                      .|.+.+|.-...     .. ....++|++|.+.+...... .+..+++|+.+++.-....        ....+..+++++
T Consensus       111 ~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--------~~~~l~~l~~L~  176 (308)
T 1h6u_A          111 TLDLTSTQITDV-----TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS--------DLTPLANLSKLT  176 (308)
T ss_dssp             EEECTTSCCCCC-----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--------CCGGGTTCTTCC
T ss_pred             EEECCCCCCCCc-----hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC--------CChhhcCCCCCC
Confidence            777766321111     11 12356777777776544322 2556677777665322111        111266778888


Q ss_pred             EEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191          280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~~~  340 (341)
                      .|.++.+.+..+.  .   +..+++|++|++..+ -.+...    +..+|+|+.|.+.+-.|
T Consensus       177 ~L~l~~n~l~~~~--~---l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          177 TLKADDNKISDIS--P---LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             EEECCSSCCCCCG--G---GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEE
T ss_pred             EEECCCCccCcCh--h---hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCee
Confidence            8888776554321  1   235667888888776 222221    57788888888876443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.50  E-value=3.8e-07  Score=87.57  Aligned_cols=210  Identities=12%  Similarity=0.094  Sum_probs=127.5

Q ss_pred             cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF  192 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l  192 (341)
                      |..+..+++|++|+| ++..+.. ++ ...++++|++|  +|.+  ++.. ....+.++++|+.|++.++.-.....+..
T Consensus        43 ~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L--~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  118 (549)
T 2z81_A           43 HGDLRACANLQVLIL-KSSRINTIEGDAFYSLGSLEHL--DLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSL  118 (549)
T ss_dssp             SSTTSSCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCS
T ss_pred             hhhhhcCCcccEEEC-CCCCcCccChhhccccccCCEE--ECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhh
Confidence            455667899999999 7655533 32 35578999999  9988  4433 33447889999999999885432110011


Q ss_pred             EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccch
Q 047191          193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSI  269 (341)
Q Consensus       193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~  269 (341)
                      .-..++|+.|.+..|...+...   .......++|++|.+.+......   .+..+++|+.+.+.......  +    ..
T Consensus       119 ~~~l~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~----~~  189 (549)
T 2z81_A          119 FPNLTNLQTLRIGNVETFSEIR---RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF--L----LE  189 (549)
T ss_dssp             CTTCTTCCEEEEEESSSCCEEC---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT--H----HH
T ss_pred             hhccCCccEEECCCCccccccC---HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc--c----ch
Confidence            2245689999998853111100   00011367899999987654432   35566777777765332111  0    04


Q ss_pred             HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC---ChhHHHHHHhcCCCCCcEEEeeee
Q 047191          270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI---GWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~---~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                      .+...+++++.|.++.+.+.............+++|++|++..+..   ....+...++.+++|+.|.+.+..
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            4556789999999998766543211111122467888888887622   233455556667777777776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.48  E-value=6.3e-08  Score=91.34  Aligned_cols=188  Identities=19%  Similarity=0.132  Sum_probs=107.5

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|++|++ .++.+...+....+++|++|  +|.+  +++-.  . +..+++|+.|++.+|.-....  . .-..+
T Consensus        86 ~~~l~~L~~L~l-~~n~l~~~~~~~~l~~L~~L--~L~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~--~-~~~l~  156 (466)
T 1o6v_A           86 LKNLTKLVDILM-NNNQIADITPLANLTNLTGL--TLFNNQITDID--P-LKNLTNLNRLELSSNTISDIS--A-LSGLT  156 (466)
T ss_dssp             GTTCTTCCEEEC-CSSCCCCCGGGTTCTTCCEE--ECCSSCCCCCG--G-GTTCTTCSEEEEEEEEECCCG--G-GTTCT
T ss_pred             hhccccCCEEEC-CCCccccChhhcCCCCCCEE--ECCCCCCCCCh--H-HcCCCCCCEEECCCCccCCCh--h-hccCC
Confidence            555677777777 55555433235556777777  7766  33321  1 566777777777776543222  1 11335


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +|+.|.+..+ ...     ... ....++|++|.+++...... .+..+++|+.+.+.-.....        ..-+..++
T Consensus       157 ~L~~L~l~~~-~~~-----~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--------~~~~~~l~  221 (466)
T 1o6v_A          157 SLQQLSFGNQ-VTD-----LKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--------ITPLGILT  221 (466)
T ss_dssp             TCSEEEEEES-CCC-----CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--------CGGGGGCT
T ss_pred             cccEeecCCc-ccC-----chh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccc--------cccccccC
Confidence            6777776541 111     001 12357788888776654332 35566777776654221111        11255678


Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~~~  340 (341)
                      +++.|.++.+.+..+     ..+..+++|++|++..+ -.+...    +..+|+|+.|.+.+-.|
T Consensus       222 ~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l  277 (466)
T 1o6v_A          222 NLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQI  277 (466)
T ss_dssp             TCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC
T ss_pred             CCCEEECCCCCcccc-----hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCcc
Confidence            888888887654332     12335778999998887 222222    77889999998876433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.48  E-value=5.3e-08  Score=88.67  Aligned_cols=164  Identities=13%  Similarity=0.062  Sum_probs=89.0

Q ss_pred             cCCchhhhhhhccC----------CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccc
Q 047191          145 CFPNVKILTMQLES----------PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFT  214 (341)
Q Consensus       145 ~~~~L~~L~~~L~~----------~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~  214 (341)
                      .|++|+.|  .+..          ++..++..++..+|.||+|.|.++.+....  .  +..++|+.|++..|   ....
T Consensus       137 ~l~~L~~L--~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~--~--~~~~~L~~L~L~~~---~l~~  207 (362)
T 2ra8_A          137 KFAHFEGL--FWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG--K--KPRPNLKSLEIISG---GLPD  207 (362)
T ss_dssp             HHTTCSEE--EECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC--S--CBCTTCSEEEEECS---BCCH
T ss_pred             hcchhhhe--eecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec--c--ccCCCCcEEEEecC---CCCh
Confidence            46778888  7754          123458899999999999999998554434  3  45789999999874   2111


Q ss_pred             cCceeEE-EecCCceEEEeeccc---cCceeecCCCCeeEEEEEEEeCccccCCCccchHHh--hcCCCceEEEEecchh
Q 047191          215 QAEYKVR-ITAPSLERLHIMSDI---FGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLL--QQLNNTTSLTVSYGVL  288 (341)
Q Consensus       215 ~~~~~~~-~~~p~L~~l~~~~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l--~~~~~l~~L~l~~~~~  288 (341)
                      .....+. ...|+|++|.++...   .....+..+                       ...+  ..+++++.|.+..+.+
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l-----------------------~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF-----------------------RPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT-----------------------GGGSCTTTCTTCCEEEEESCTT
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHH-----------------------HHHHhcCCCCCcCEEeCCCCCC
Confidence            1111111 146888888875210   000000000                       1111  2456777777765433


Q ss_pred             hhccccccCCCCCCCcccEEEEEEcCCChhHH---HHHHhcCCCCCcEEEeeeee
Q 047191          289 CALDHAYHKWFPALSYLQHLEVAVGAIGWAVL---PVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       289 ~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l---~~ll~~cp~L~~L~l~~~~~  340 (341)
                      ...........|.+++|++|+|+.+..+..+.   ..-++.+|+|+.|++.+-.|
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            21000001112456677777776554444333   33335567777777765444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.46  E-value=3.7e-08  Score=90.58  Aligned_cols=103  Identities=16%  Similarity=0.087  Sum_probs=53.2

Q ss_pred             CCceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCC
Q 047191          225 PSLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALS  303 (341)
Q Consensus       225 p~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~  303 (341)
                      ++|++|.+.+..... ..+..+++|+++++........      ....+..+++++.|.++.+.+..+.    .....++
T Consensus       226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~l~  295 (390)
T 3o6n_A          226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNNRLVALN----LYGQPIP  295 (390)
T ss_dssp             SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECCSSCCCEEE----CSSSCCT
T ss_pred             ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc------ChhHccccccCCEEECCCCcCcccC----cccCCCC
Confidence            345555555443322 1244555666555432111100      0334556677777777766543321    1122567


Q ss_pred             cccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191          304 YLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       304 ~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                      +|++|++..+...  .+..-+..+|+|+.|++.+-.
T Consensus       296 ~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          296 TLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             TCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSC
T ss_pred             CCCEEECCCCcce--ecCccccccCcCCEEECCCCc
Confidence            8888888887211  111224567899999887643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.44  E-value=1.2e-07  Score=89.49  Aligned_cols=188  Identities=19%  Similarity=0.160  Sum_probs=127.3

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|++|++ +++.+...+....+++|+.|  ++.+  +++-.   -+.++++|+.|.+.+.... ..  . --..+
T Consensus       108 ~~~l~~L~~L~L-~~n~l~~~~~~~~l~~L~~L--~l~~n~l~~~~---~~~~l~~L~~L~l~~~~~~-~~--~-~~~l~  177 (466)
T 1o6v_A          108 LANLTNLTGLTL-FNNQITDIDPLKNLTNLNRL--ELSSNTISDIS---ALSGLTSLQQLSFGNQVTD-LK--P-LANLT  177 (466)
T ss_dssp             GTTCTTCCEEEC-CSSCCCCCGGGTTCTTCSEE--EEEEEEECCCG---GGTTCTTCSEEEEEESCCC-CG--G-GTTCT
T ss_pred             hcCCCCCCEEEC-CCCCCCCChHHcCCCCCCEE--ECCCCccCCCh---hhccCCcccEeecCCcccC-ch--h-hccCC
Confidence            667899999999 87776555456678999999  9988  44321   2788999999999754322 11  1 11447


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +|+.|.+.+|.-...     .. ....++|++|.+.+...... .+..+++|+++++.-.....        ...+..++
T Consensus       178 ~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------~~~l~~l~  243 (466)
T 1o6v_A          178 TLERLDISSNKVSDI-----SV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--------IGTLASLT  243 (466)
T ss_dssp             TCCEEECCSSCCCCC-----GG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--------CGGGGGCT
T ss_pred             CCCEEECcCCcCCCC-----hh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--------chhhhcCC
Confidence            899999988532111     11 12468999999987764432 35678889988774321111        34567889


Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~~~  340 (341)
                      +++.|.++.+.+....     .+..+++|++|++..+ -.+...    +..+|+|+.|++.+-.+
T Consensus       244 ~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l  299 (466)
T 1o6v_A          244 NLTDLDLANNQISNLA-----PLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQL  299 (466)
T ss_dssp             TCSEEECCSSCCCCCG-----GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC
T ss_pred             CCCEEECCCCccccch-----hhhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcc
Confidence            9999999987654321     1346789999999887 222222    77899999999876443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.37  E-value=5.1e-08  Score=85.67  Aligned_cols=195  Identities=18%  Similarity=0.098  Sum_probs=92.5

Q ss_pred             CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee-cCCCCceeEEEeCCC
Q 047191          124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL-NDEGPTTKFVISSST  198 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~-~~~~~~~~l~i~~~s  198 (341)
                      ++|++|+| ++..+.. ++ ....+++|++|  .|.+  ++.-. ...+.+++.|+.|++.++. -....+ ...-..++
T Consensus        32 ~~l~~L~l-~~n~i~~~~~~~~~~~~~L~~L--~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~  106 (285)
T 1ozn_A           32 AASQRIFL-HGNRISHVPAASFRACRNLTIL--WLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGR  106 (285)
T ss_dssp             TTCSEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTT
T ss_pred             CCceEEEe-eCCcCCccCHHHcccCCCCCEE--ECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcC
Confidence            45666666 5444432 21 23456666666  6665  33211 1224556677777766664 211100 00112356


Q ss_pred             cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191          199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL  275 (341)
Q Consensus       199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~  275 (341)
                      |+.|.+.+|.-...    .....-..++|++|.+.+......   .+..+++|+.+++.-.....  ..    ...+..+
T Consensus       107 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~~~~~l  176 (285)
T 1ozn_A          107 LHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VP----ERAFRGL  176 (285)
T ss_dssp             CCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--EC----TTTTTTC
T ss_pred             CCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--cC----HHHhcCc
Confidence            66666665311110    000011246677777665543322   14456666665553211110  00    3335566


Q ss_pred             CCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          276 NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       276 ~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ++++.|.++.+.+..+   ....+..+++|++|++..+.... .....+..+|+|+.|++.+
T Consensus       177 ~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHV---HPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             TTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCS
T ss_pred             cccCEEECCCCccccc---CHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccC
Confidence            7777777776654322   11223356677777777652111 1123456677777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.37  E-value=7.3e-08  Score=90.73  Aligned_cols=179  Identities=12%  Similarity=0.008  Sum_probs=89.1

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|++|+| +++.+...+ ...+++|+.|  +|.+  ++.-.    +.++++|+.|++.++.-.++.    --..+
T Consensus        60 l~~l~~L~~L~L-s~n~l~~~~-~~~l~~L~~L--~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~~l~----~~~l~  127 (457)
T 3bz5_A           60 IEKLTGLTKLIC-TSNNITTLD-LSQNTNLTYL--ACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD----VSQNP  127 (457)
T ss_dssp             GGGCTTCSEEEC-CSSCCSCCC-CTTCTTCSEE--ECCSSCCSCCC----CTTCTTCCEEECCSSCCSCCC----CTTCT
T ss_pred             hcccCCCCEEEc-cCCcCCeEc-cccCCCCCEE--ECcCCCCceee----cCCCCcCCEEECCCCcCCeec----CCCCC
Confidence            344555555555 444443331 3345555555  5555  33321    445555666655555322111    01224


Q ss_pred             CcceEEEeeecCccccccCceeEEE-ecCCceEEEeecc-ccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRI-TAPSLERLHIMSD-IFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL  275 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~-~~p~L~~l~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~  275 (341)
                      +|+.|.+..+.   .     ..+.+ ..++|++|.+.+. ......+..+++|+.+++.......        .. +..+
T Consensus       128 ~L~~L~l~~N~---l-----~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--------l~-l~~l  190 (457)
T 3bz5_A          128 LLTYLNCARNT---L-----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--------LD-VSQN  190 (457)
T ss_dssp             TCCEEECTTSC---C-----SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--------CC-CTTC
T ss_pred             cCCEEECCCCc---c-----ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--------ec-cccC
Confidence            55555555521   1     01111 2455666666554 2223345555666655543211111        11 4456


Q ss_pred             CCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191          276 NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       276 ~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      ++++.|.++.+.+..+      .+..+++|+.|++..+ -.+.   .  +..+|+|+.|++.+-
T Consensus       191 ~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~i---p--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          191 KLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTEI---D--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             TTCCEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSS
T ss_pred             CCCCEEECcCCcCCee------ccccCCCCCEEECcCCccccc---C--ccccCCCCEEEeeCC
Confidence            7777777776654332      1335678888888876 2222   2  677888888887653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.33  E-value=1.2e-08  Score=93.80  Aligned_cols=210  Identities=14%  Similarity=0.029  Sum_probs=123.9

Q ss_pred             ccccCcceEEEEeeeeeeccC----C-C-------cccCCchhhhhhhccC--CCcch---HHHHHhcCCccceeEEeee
Q 047191          120 LYASPSVEVLKLMSDFLLKVP----A-G-------GTCFPNVKILTMQLES--PDNIL---TEKLFCSCPSLEELSIQAY  182 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~----~-~-------~~~~~~L~~L~~~L~~--~~~~~---l~~ll~~cp~Le~L~L~~c  182 (341)
                      +..+++|++|+| +++.+...    | .       ...+++|++|  +|.+  +++.+   +...+..|++|+.|+|.+|
T Consensus        56 l~~~~~L~~L~L-s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L--~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           56 IASKKDLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTV--RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TTTCTTCCEEEC-CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE--ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHhCCCccEEeC-cccccCccccchhHHHHHHHHHHhhCCcccEE--ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            445788999999 66533211    1 1       1357899999  8888  66553   4455788999999999888


Q ss_pred             ecCCCCceeEEE-----eC---------CCcceEEEeeecCccccccCce---eEEEecCCceEEEeeccccCce-----
Q 047191          183 LNDEGPTTKFVI-----SS---------STLKQCTLWVETEGEMFTQAEY---KVRITAPSLERLHIMSDIFGKF-----  240 (341)
Q Consensus       183 ~~~~~~~~~l~i-----~~---------~sL~~L~i~~c~~~~~~~~~~~---~~~~~~p~L~~l~~~~~~~~~~-----  240 (341)
                      .-....  ...+     ..         ++|+.|.+..|.-..   ....   ...-..++|++|.+.+......     
T Consensus       133 ~l~~~~--~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l  207 (386)
T 2ca6_A          133 GLGPQA--GAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN---GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL  207 (386)
T ss_dssp             CCHHHH--HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred             CCCHHH--HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence            532100  0011     11         689999988842110   1111   1112467899999987654411     


Q ss_pred             ---eecCCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCC--CCCCcccEEEEEEc
Q 047191          241 ---VVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWF--PALSYLQHLEVAVG  313 (341)
Q Consensus       241 ---~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~--~~f~~L~~L~l~~~  313 (341)
                         .+..+++|+.+++.........   ... ...+..+++++.|.++.+.+....... ...+  ..+++|++|+|..+
T Consensus       208 ~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n  284 (386)
T 2ca6_A          208 LLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN  284 (386)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence               3557788888776432211000   001 445678899999999877653221000 1111  13678999999887


Q ss_pred             CCCh---hHHHHHH-hcCCCCCcEEEeeeee
Q 047191          314 AIGW---AVLPVIL-SSSVHLQSLVLRKVII  340 (341)
Q Consensus       314 ~~~~---~~l~~ll-~~cp~L~~L~l~~~~~  340 (341)
                      ....   ..+...+ .++|+|+.|++.+-.|
T Consensus       285 ~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            4433   2344544 6689999999876443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.31  E-value=5.9e-08  Score=91.14  Aligned_cols=39  Identities=26%  Similarity=0.418  Sum_probs=19.4

Q ss_pred             hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      +.++++++.|.++.+.+..+.   ...+..+++|++|+|..+
T Consensus       262 ~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          262 FDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccCC
Confidence            445566666666655443221   111224556666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.30  E-value=1.5e-07  Score=84.07  Aligned_cols=54  Identities=24%  Similarity=0.218  Sum_probs=24.1

Q ss_pred             CcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          124 PSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      ++|++|+| ++..+...+  ....+++|++|  .|.+  ++...  . +..+++|+.|++.++.
T Consensus        34 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           34 WNVKELDL-SGNPLSQISAADLAPFTKLELL--NLSSNVLYETL--D-LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             GGCSEEEC-TTSCCCCCCHHHHTTCTTCCEE--ECTTSCCEEEE--E-ETTCTTCCEEECCSSE
T ss_pred             CCCCEEEC-cCCccCcCCHHHhhCCCcCCEE--ECCCCcCCcch--h-hhhcCCCCEEECcCCc
Confidence            34555555 444333221  12345555555  5555  22111  0 4455555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.30  E-value=2.5e-07  Score=87.09  Aligned_cols=179  Identities=16%  Similarity=0.066  Sum_probs=116.9

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|+.|++ +++.+... ...++++|+.|  .|.+  ++.-.    +..+++|+.|.+.++.-.++.    --..+
T Consensus        81 ~~~l~~L~~L~L-s~N~l~~~-~~~~l~~L~~L--~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~----l~~l~  148 (457)
T 3bz5_A           81 LSQNTNLTYLAC-DSNKLTNL-DVTPLTKLTYL--NCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID----VSHNT  148 (457)
T ss_dssp             CTTCTTCSEEEC-CSSCCSCC-CCTTCTTCCEE--ECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC----CTTCT
T ss_pred             cccCCCCCEEEC-cCCCCcee-ecCCCCcCCEE--ECCCCcCCeec----CCCCCcCCEEECCCCccceec----cccCC
Confidence            566789999999 77666555 35678899999  8888  54432    678899999999887543211    11346


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNN  277 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  277 (341)
                      +|+.|.+..|...+.    .  -....++|++|.+++.....+.+..+++|+.+.+.......        . -+..+++
T Consensus       149 ~L~~L~l~~n~~~~~----~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~--------~-~l~~l~~  213 (457)
T 3bz5_A          149 QLTELDCHLNKKITK----L--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITK--------L-DLNQNIQ  213 (457)
T ss_dssp             TCCEEECTTCSCCCC----C--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSC--------C-CCTTCTT
T ss_pred             cCCEEECCCCCcccc----c--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCe--------e-ccccCCC
Confidence            788888887422111    0  01136889999998776655557778888887764321111        1 1456788


Q ss_pred             ceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEe
Q 047191          278 TTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLR  336 (341)
Q Consensus       278 l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~  336 (341)
                      ++.|.++.+.+..+.      +..+++|+.|++..+. .+..     +..+++|+.|.+.
T Consensus       214 L~~L~Ls~N~l~~ip------~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~  262 (457)
T 3bz5_A          214 LTFLDCSSNKLTEID------VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCI  262 (457)
T ss_dssp             CSEEECCSSCCSCCC------CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECT
T ss_pred             CCEEECcCCcccccC------ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEecc
Confidence            999999887654321      3367789999988872 2211     4567777777543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.29  E-value=1.1e-07  Score=92.44  Aligned_cols=102  Identities=16%  Similarity=0.094  Sum_probs=54.7

Q ss_pred             CceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCc
Q 047191          226 SLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSY  304 (341)
Q Consensus       226 ~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~  304 (341)
                      +|+.|.+.+..... ..+..+++|+.+++........      ....+..+++++.|.++.+.+..+.    .....+++
T Consensus       233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~l~~  302 (597)
T 3oja_B          233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNNRLVALN----LYGQPIPT  302 (597)
T ss_dssp             CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECTTSCCCEEE----CSSSCCTT
T ss_pred             CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC------CHHHhcCccCCCEEECCCCCCCCCC----cccccCCC
Confidence            45555555443322 2245556666655532111100      0334556777777777766544321    11224778


Q ss_pred             ccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191          305 LQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       305 L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                      |+.|+|..+...  .+..-+..+|+|+.|++.+-.
T Consensus       303 L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          303 LKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             CCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSC
T ss_pred             CcEEECCCCCCC--ccCcccccCCCCCEEECCCCC
Confidence            999999887221  122224667999999987643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.29  E-value=2.5e-07  Score=87.82  Aligned_cols=162  Identities=12%  Similarity=0.085  Sum_probs=88.3

Q ss_pred             cCcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191          123 SPSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST  198 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s  198 (341)
                      +++|+.|+| ++..+...+  ....+++|+.|  +|.+  ++...-   +.+++.|+.|+|.++.-.     .+. ..++
T Consensus        33 ~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L--~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-----~l~-~~~~  100 (487)
T 3oja_A           33 AWNVKELDL-SGNPLSQISAADLAPFTKLELL--NLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-----ELL-VGPS  100 (487)
T ss_dssp             GGGCCEEEC-CSSCCCCCCGGGGTTCTTCCEE--ECTTSCCEEEEE---CTTCTTCCEEECCSSEEE-----EEE-ECTT
T ss_pred             CCCccEEEe-eCCcCCCCCHHHHhCCCCCCEE--EeeCCCCCCCcc---cccCCCCCEEEecCCcCC-----CCC-CCCC
Confidence            457888888 665554332  34467788888  7777  332111   677888888888777542     122 3367


Q ss_pred             cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc---eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191          199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK---FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL  275 (341)
Q Consensus       199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~  275 (341)
                      |+.|.+.+|.-..       ......|+|++|.+.+.....   ..+..+++|+.+++.........     ...+...+
T Consensus       101 L~~L~L~~N~l~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~~l  168 (487)
T 3oja_A          101 IETLHAANNNISR-------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-----FAELAASS  168 (487)
T ss_dssp             CCEEECCSSCCCC-------EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-----GGGGGGGT
T ss_pred             cCEEECcCCcCCC-------CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-----hHHHhhhC
Confidence            8888777742111       111234677888777655432   23456677776655321111000     03344466


Q ss_pred             CCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          276 NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       276 ~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      ++++.|.++.+.+..+  +   ....+++|+.|+|+.+
T Consensus       169 ~~L~~L~Ls~N~l~~~--~---~~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDV--K---GQVVFAKLKTLDLSSN  201 (487)
T ss_dssp             TTCCEEECTTSCCCEE--E---CCCCCTTCCEEECCSS
T ss_pred             CcccEEecCCCccccc--c---ccccCCCCCEEECCCC
Confidence            7777777776654322  1   1113556666666555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.28  E-value=4.7e-08  Score=86.77  Aligned_cols=122  Identities=16%  Similarity=0.050  Sum_probs=62.3

Q ss_pred             CcceEEEEeeeeeeccCCC--cccCCchhhhhhhccC--CCcch-HHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191          124 PSVEVLKLMSDFLLKVPAG--GTCFPNVKILTMQLES--PDNIL-TEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST  198 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~~~L~~--~~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s  198 (341)
                      ++|++|+| .+..+...+.  ...+++|+.|  +|.+  ++... ....+.+++.|+.|++.++.-..+.  .-....++
T Consensus        28 ~~l~~L~L-~~n~l~~i~~~~~~~l~~L~~L--~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~--~~~~~l~~  102 (306)
T 2z66_A           28 SSATRLEL-ESNKLQSLPHGVFDKLTQLTKL--SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--SNFLGLEQ  102 (306)
T ss_dssp             TTCCEEEC-CSSCCCCCCTTTTTTCTTCSEE--ECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE--EEEETCTT
T ss_pred             CCCCEEEC-CCCccCccCHhHhhccccCCEE--ECCCCccCcccCcccccccccccCEEECCCCccccCh--hhcCCCCC
Confidence            46788888 6655544322  3467888888  8777  44321 1223446788888888776432111  11224466


Q ss_pred             cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEE
Q 047191          199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVIL  253 (341)
Q Consensus       199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l  253 (341)
                      |+.|.+..+.-...   .........++|++|.+++......   .+..+++|+.+++
T Consensus       103 L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A          103 LEHLDFQHSNLKQM---SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCEEECTTSEEESS---TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCccccc---ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            77777766311110   0000111245666666665432211   2345556665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.27  E-value=1.8e-07  Score=88.38  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             CceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCC
Q 047191          226 SLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPAL  302 (341)
Q Consensus       226 ~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f  302 (341)
                      +|++|.+.+.....+   .+..+++|+.+++.-.....  ..    ...+..+++++.|.++.+.+..+.   ...+..+
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~----~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l  295 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--IE----GSMLHELLRLQEIQLVGGQLAVVE---PYAFRGL  295 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE--EC----TTSCTTCTTCCEEECCSSCCSEEC---TTTBTTC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc--cC----hhhccccccCCEEECCCCccceEC---HHHhcCc
Confidence            555555555433221   23455555555543211100  00    223345556666666554433221   1122345


Q ss_pred             CcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191          303 SYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       303 ~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ++|++|+|..+. ....  ...+..+|+|+.|++.+
T Consensus       296 ~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          296 NYLRVLNVSGNQLTTLE--ESVFHSVGNLETLILDS  329 (477)
T ss_dssp             TTCCEEECCSSCCSCCC--GGGBSCGGGCCEEECCS
T ss_pred             ccCCEEECCCCcCceeC--HhHcCCCcccCEEEccC
Confidence            566666666551 1111  12345556666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.26  E-value=5.2e-07  Score=79.60  Aligned_cols=117  Identities=19%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          122 ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       122 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      .+++|+.|.+ .++.+...+....+++|+.|  +|.+  +++-.  . +..+++|+.|.+.++.-....  . --..++|
T Consensus        44 ~l~~L~~L~l-~~~~i~~~~~~~~l~~L~~L--~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L  114 (291)
T 1h6t_A           44 ELNSIDQIIA-NNSDIKSVQGIQYLPNVTKL--FLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLS--S-LKDLKKL  114 (291)
T ss_dssp             HHHTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGG--G-GTTCTTC
T ss_pred             hcCcccEEEc-cCCCcccChhHhcCCCCCEE--EccCCccCCCc--c-cccCCCCCEEECCCCcCCCCh--h-hccCCCC
Confidence            3677889999 77777655566678999999  8888  44322  1 788999999999887543322  1 1123567


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEE
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVIL  253 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l  253 (341)
                      +.|.+.+|.-...     .. ....++|++|.+++...... .+..+++|+.+++
T Consensus       115 ~~L~L~~n~i~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  163 (291)
T 1h6t_A          115 KSLSLEHNGISDI-----NG-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL  163 (291)
T ss_dssp             CEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             CEEECCCCcCCCC-----hh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEc
Confidence            7777776421111     00 11356777777766543322 2344445554443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.25  E-value=1e-06  Score=83.06  Aligned_cols=155  Identities=19%  Similarity=0.096  Sum_probs=81.6

Q ss_pred             cccccccCcceEEEEeeeeeec-c-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191          117 QIELYASPSVEVLKLMSDFLLK-V-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF  192 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~-~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l  192 (341)
                      |..+..+++|++|+| .+..+. . +....++++|++|  +|.+  ++.-. ...+.++++|+.|+|.++.-..... ..
T Consensus        49 ~~~~~~l~~L~~L~L-~~n~i~~~~~~~~~~l~~L~~L--~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~-~~  123 (477)
T 2id5_A           49 QDEFASFPHLEELEL-NENIVSAVEPGAFNNLFNLRTL--GLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLD-YM  123 (477)
T ss_dssp             TTTTTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECT-TT
T ss_pred             HhHccCCCCCCEEEC-CCCccCEeChhhhhCCccCCEE--ECCCCcCCccC-cccccCCCCCCEEECCCCccccCCh-hH
Confidence            344555778888888 544443 2 2234567778888  7776  33211 1235667888888887764321000 00


Q ss_pred             EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccch
Q 047191          193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSI  269 (341)
Q Consensus       193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~  269 (341)
                      --..++|+.|.+..+.-...   ... .....++|++|.+.+......   .+..+++|+.+.+.-.......      .
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~------~  193 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYI---SHR-AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR------D  193 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEE---CTT-SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC------T
T ss_pred             ccccccCCEEECCCCcccee---Chh-hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC------h
Confidence            11345777887776311110   000 001357788888877654432   2566777777776532211100      2


Q ss_pred             HHhhcCCCceEEEEecc
Q 047191          270 QLLQQLNNTTSLTVSYG  286 (341)
Q Consensus       270 ~~l~~~~~l~~L~l~~~  286 (341)
                      ..+..+++++.|.++.+
T Consensus       194 ~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          194 YSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             TCSCSCTTCCEEEEECC
T ss_pred             hhcccCcccceeeCCCC
Confidence            23456677777777653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.24  E-value=5e-08  Score=94.95  Aligned_cols=60  Identities=25%  Similarity=0.303  Sum_probs=36.0

Q ss_pred             ccccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          120 LYASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      +..+++|+.|++ +++.+.. |....++++|++|  ++.+  ++.. ....+.++|.|+.|.+.++.
T Consensus       274 ~~~l~~L~~L~l-~~n~l~~lp~~l~~l~~L~~L--~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          274 FHCFSGLQELDL-TATHLSELPSGLVGLSTLKKL--VLSANKFENL-CQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             TTTCTTCSEEEC-TTSCCSCCCSSCCSCTTCCEE--ECTTCCCSBG-GGGCGGGCTTCSEEECCSCS
T ss_pred             hccccCCCEEec-cCCccCCCChhhcccccCCEE--ECccCCcCcC-chhhhhccCcCCEEECCCCC
Confidence            445677888888 6555543 3234556777777  7776  3322 12235567777777777663

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.23  E-value=3e-07  Score=83.31  Aligned_cols=198  Identities=19%  Similarity=0.135  Sum_probs=113.1

Q ss_pred             CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE-EEeCCC
Q 047191          124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF-VISSST  198 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l-~i~~~s  198 (341)
                      ++|++|++ ++..+.. ++ ...++++|++|  +|.+  +++-. ...+.++++|+.|++.++.-....  .- .-..++
T Consensus        52 ~~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L--~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~  125 (353)
T 2z80_A           52 EAVKSLDL-SNNRITYISNSDLQRCVNLQAL--VLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLS--SSWFKPLSS  125 (353)
T ss_dssp             TTCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCC--HHHHTTCTT
T ss_pred             ccCcEEEC-CCCcCcccCHHHhccCCCCCEE--ECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCC--HhHhCCCcc
Confidence            47999999 7655543 32 35578999999  9987  44322 223677899999999887543322  11 113468


Q ss_pred             cceEEEeeecCccccccCceeEEEecCCceEEEeeccc-cCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhc
Q 047191          199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDI-FGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQ  274 (341)
Q Consensus       199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~-~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~  274 (341)
                      |+.|++.++.-...   ......-..++|++|.+.+.. ....   .+..+++|+++++.......  ..    ...+..
T Consensus       126 L~~L~L~~n~l~~l---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~~l~~  196 (353)
T 2z80_A          126 LTFLNLLGNPYKTL---GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YE----PKSLKS  196 (353)
T ss_dssp             CSEEECTTCCCSSS---CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--EC----TTTTTT
T ss_pred             CCEEECCCCCCccc---CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc--cC----HHHHhc
Confidence            88888887421111   000112246788998888762 2222   35567777777665322111  00    334566


Q ss_pred             CCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC---ChhHHHHHHhcCCCCCcEEEeeeee
Q 047191          275 LNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI---GWAVLPVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       275 ~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~---~~~~l~~ll~~cp~L~~L~l~~~~~  340 (341)
                      +++++.|.++.+.+..+.....   ..+++|++|++..+..   .... ....+.++.++.+.+.+..|
T Consensus       197 l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~-l~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          197 IQNVSHLILHMKQHILLLEIFV---DVTSSVECLELRDTDLDTFHFSE-LSTGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             CSEEEEEEEECSCSTTHHHHHH---HHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBC
T ss_pred             cccCCeecCCCCccccchhhhh---hhcccccEEECCCCccccccccc-cccccccchhhccccccccc
Confidence            7888888888765533211101   1356788888887711   1111 22345677788887776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.22  E-value=2.3e-07  Score=86.84  Aligned_cols=185  Identities=16%  Similarity=0.151  Sum_probs=90.6

Q ss_pred             cccccCcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE-
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV-  193 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~-  193 (341)
                      .+..+++|+.|+| ++..+...+  ....+++|+.|  +|.+  ++.- -...+.++++|+.|++.++....    .+. 
T Consensus       107 ~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~----~i~~  178 (440)
T 3zyj_A          107 AFNGLANLNTLEL-FDNRLTTIPNGAFVYLSKLKEL--WLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLS----YISE  178 (440)
T ss_dssp             GGTTCSSCCEEEC-CSSCCSSCCTTTSCSCSSCCEE--ECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCC----EECT
T ss_pred             hccCCccCCEEEC-CCCcCCeeCHhHhhccccCcee--eCCCCccccc-CHHHhhhCcccCEeCCCCCCCcc----eeCc
Confidence            3444666666666 544443322  23455666666  6665  3221 11224556677777766653321    111 


Q ss_pred             ---EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCcc
Q 047191          194 ---ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNR  267 (341)
Q Consensus       194 ---i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~  267 (341)
                         -..++|+.|.+.+|.-...     .. ....++|++|.+++......   .+..+++|+.+++.-.....  ..   
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~---  247 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLREI-----PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV--IE---  247 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCSSC-----CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--EC---
T ss_pred             chhhcccccCeecCCCCcCccc-----cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE--EC---
Confidence               0234666666666311111     10 12345677777766544322   24556666665543211110  00   


Q ss_pred             chHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHhc
Q 047191          268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILSS  326 (341)
Q Consensus       268 ~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~~  326 (341)
                       ...+..+++++.|.|+.+.+..+.   ...+..+++|+.|+|..+    +....++...++.
T Consensus       248 -~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~  306 (440)
T 3zyj_A          248 -RNAFDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKD  306 (440)
T ss_dssp             -TTSSTTCTTCCEEECTTSCCCCCC---TTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred             -hhhhcCCCCCCEEECCCCCCCccC---hhHhccccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence             334456677777777766544221   112335667777777765    2334555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.21  E-value=9.1e-08  Score=89.68  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=36.3

Q ss_pred             HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..+..+++++.|.++.+.+..+   ....+..+++|++|++..+.... .....+..+|+|+.|++.+
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRAL---GDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCS
T ss_pred             hHhcCcccCCEEECCCCccccc---ChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccC
Confidence            4455667777777766654322   11223356778888887762111 0112456778888888765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.19  E-value=5.8e-07  Score=87.44  Aligned_cols=117  Identities=19%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          122 ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       122 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ..+.|+.|.+ .++.+...+....+++|+.|  +|.+  +++-.-   +..++.|+.|.|.++.-....  .+ -..++|
T Consensus        41 ~L~~L~~L~l-~~n~i~~l~~l~~l~~L~~L--~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~--~l-~~l~~L  111 (605)
T 1m9s_A           41 ELNSIDQIIA-NNSDIKSVQGIQYLPNVTKL--FLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLS--SL-KDLKKL  111 (605)
T ss_dssp             HHTTCCCCBC-TTCCCCCCTTGGGCTTCCEE--ECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCT--TS-TTCTTC
T ss_pred             cCCCCCEEEC-cCCCCCCChHHccCCCCCEE--EeeCCCCCCChh---hccCCCCCEEECcCCCCCCCh--hh-ccCCCC
Confidence            3567888888 76666655566678888888  8877  433221   778888999988887543322  11 134567


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEE
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVIL  253 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l  253 (341)
                      +.|.+..|.-...     .. ...+|+|+.|.+++.....+ .+..+++|+.+++
T Consensus       112 ~~L~Ls~N~l~~l-----~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L  160 (605)
T 1m9s_A          112 KSLSLEHNGISDI-----NG-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL  160 (605)
T ss_dssp             CEEECTTSCCCCC-----GG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEEC
T ss_pred             CEEEecCCCCCCC-----cc-ccCCCccCEEECCCCccCCchhhcccCCCCEEEC
Confidence            7777776421111     00 11356777777766543322 2344555555444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.18  E-value=4.6e-07  Score=79.05  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=108.1

Q ss_pred             ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          122 ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       122 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ..++|+.|.+ .++.+...+....+++|+.|  +|.+  +++-  . .+..++.|+.|.+.++.-.+... ..--..++|
T Consensus        39 ~l~~L~~L~l-~~~~i~~~~~l~~l~~L~~L--~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  111 (272)
T 3rfs_A           39 ELNSIDQIIA-NNSDIKSVQGIQYLPNVRYL--ALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPN-GVFDKLTNL  111 (272)
T ss_dssp             HHTTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             cccceeeeee-CCCCcccccccccCCCCcEE--ECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence            3678999999 77777666566778999999  9988  4442  2 46789999999999885432220 001134688


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCcee---ecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +.|.+..|.-...    .....-..++|++|.+.+.......   +..+++|+.+++.......  ..    ...+..++
T Consensus       112 ~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~~~~~l~  181 (272)
T 3rfs_A          112 KELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LP----EGVFDKLT  181 (272)
T ss_dssp             CEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTTTCT
T ss_pred             CEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--cC----HHHhcCCc
Confidence            9998888421111    0000113578999999877544332   4667788877764321111  00    44456778


Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      +++.|.++.+.+..+.   ...+..+++|+.|++..+
T Consensus       182 ~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          182 QLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             TCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCC
Confidence            8888888877654321   122346778888888776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.18  E-value=1.8e-07  Score=91.03  Aligned_cols=209  Identities=15%  Similarity=0.072  Sum_probs=108.3

Q ss_pred             cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCc-ee
Q 047191          117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPT-TK  191 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~-~~  191 (341)
                      |..+..+++|++|++ .++.+.. ++ ....+++|+.|  .+.+  +....-...+..+++|+.|++.++.-.+... +.
T Consensus       294 p~~l~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          294 PSGLVGLSTLKKLVL-SANKFENLCQISASNFPSLTHL--SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             CSSCCSCTTCCEEEC-TTCCCSBGGGGCGGGCTTCSEE--ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             ChhhcccccCCEEEC-ccCCcCcCchhhhhccCcCCEE--ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence            555666777777777 6554432 11 34456777777  7766  3322222235567777777777664321000 00


Q ss_pred             EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc----eeecCCCCeeEEEEEEEeCccccCCCcc
Q 047191          192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDVILDIVYGEWSRVDPNR  267 (341)
Q Consensus       192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~~~~  267 (341)
                      .--..++|+.|.+..|.-...    ........++|++|.+.+.....    ..+..+++|+.+++.........     
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----  441 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSL----KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-----  441 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEE----CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC-----
T ss_pred             hcccCCCCCEEECCCCcCCcC----CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC-----
Confidence            001235677777766311000    00000125677777776554321    12456667776665322111100     


Q ss_pred             chHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191          268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       268 ~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                       ...+..+++++.|.++.+.+..........+..+++|++|++..+.... .....+..+|+|+.|++.+-.
T Consensus       442 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          442 -EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             -TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred             -HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cChhhhccccCCCEEECCCCc
Confidence             3445667888888887766543211222223467788888887762111 112335678888888887643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.16  E-value=2.3e-08  Score=91.90  Aligned_cols=216  Identities=13%  Similarity=0.066  Sum_probs=128.4

Q ss_pred             cccccCcceEEEEeeeeeeccCC------CcccCCchhhhhhhccC--CC------cchH---HHHHhcCCccceeEEee
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPA------GGTCFPNVKILTMQLES--PD------NILT---EKLFCSCPSLEELSIQA  181 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~~~L~~--~~------~~~l---~~ll~~cp~Le~L~L~~  181 (341)
                      .+..+++|++|+| +++.+....      ....+++|++|  +|.+  ++      +..+   ...+..++.|+.|+|.+
T Consensus        27 ~l~~~~~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~L~~L--~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           27 VLLEDDSVKEIVL-SGNTIGTEAARWLSENIASKKDLEIA--EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             HHHHCSCCCEEEC-TTSEECHHHHHHHHHTTTTCTTCCEE--ECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHhcCCCccEEEC-CCCCCCHHHHHHHHHHHHhCCCccEE--eCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3455788999999 777664321      23468999999  9987  22      1233   33467899999999999


Q ss_pred             eecCCCCc---eeEEEeCCCcceEEEeeecCccccccCceeEEEec---------CCceEEEeeccccCce-------ee
Q 047191          182 YLNDEGPT---TKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITA---------PSLERLHIMSDIFGKF-------VV  242 (341)
Q Consensus       182 c~~~~~~~---~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~---------p~L~~l~~~~~~~~~~-------~~  242 (341)
                      +.-.....   +..--..++|+.|.+.+|.-...............         |+|++|.+.+......       .+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            86432110   00112468999999998521100000000000011         8999999987765311       24


Q ss_pred             cCCCCeeEEEEEEEeCccccCCCccc-hH-HhhcCCCceEEEEecchhhhcccc-ccCCCCCCCcccEEEEEEcCCChh-
Q 047191          243 HDLNSLTDVILDIVYGEWSRVDPNRS-IQ-LLQQLNNTTSLTVSYGVLCALDHA-YHKWFPALSYLQHLEVAVGAIGWA-  318 (341)
Q Consensus       243 ~~~~~L~~~~l~~~~~~~~~~~~~~~-~~-~l~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~f~~L~~L~l~~~~~~~~-  318 (341)
                      ..+++|+.+.+.-.......   ... .. .+..+++++.|.++.+.+...... -...+..+++|++|+|..+..+.. 
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g---~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HhCCCcCEEECcCCCCCHhH---HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            56788888776532111000   000 22 566889999999998776311000 011234677899999988744433 


Q ss_pred             --HHHHHHhc--CCCCCcEEEeeeee
Q 047191          319 --VLPVILSS--SVHLQSLVLRKVII  340 (341)
Q Consensus       319 --~l~~ll~~--cp~L~~L~l~~~~~  340 (341)
                        .+...++.  +|+|+.|.+.+-.|
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcC
Confidence              34555654  89999999876443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.13  E-value=6.3e-07  Score=77.51  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=32.4

Q ss_pred             ccCCCChHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191            6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLV   40 (341)
Q Consensus         6 ~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l   40 (341)
                      -|+.||+||+++|||||+++|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999944

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.12  E-value=1.2e-06  Score=76.47  Aligned_cols=36  Identities=31%  Similarity=0.623  Sum_probs=33.8

Q ss_pred             CccCCCChHHHHHHHcCCChhhhh-hhhccccchHHh
Q 047191            5 YRINALPDSVLCHILSYLPTKNVV-ATSILARRWKLV   40 (341)
Q Consensus         5 d~is~LPd~iL~~Ils~Lp~~~~~-~~s~vskrWr~l   40 (341)
                      ..+..||||+|.+||++||.++++ +++.|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            367899999999999999999999 999999999976

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.12  E-value=6.2e-07  Score=87.20  Aligned_cols=205  Identities=12%  Similarity=0.011  Sum_probs=91.7

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|+.|++ .+..+...+....+++|++|  .+.+  +  ..+..+  .+|.|+.|.+.++......  . ....+
T Consensus       281 ~~~l~~L~~L~l-~~~~~~~l~~l~~~~~L~~L--~l~~n~l--~~lp~~--~l~~L~~L~l~~n~~~~~~--~-~~~l~  350 (606)
T 3vq2_A          281 FHCLANVSAMSL-AGVSIKYLEDVPKHFKWQSL--SIIRCQL--KQFPTL--DLPFLKSLTLTMNKGSISF--K-KVALP  350 (606)
T ss_dssp             CGGGTTCSEEEE-ESCCCCCCCCCCTTCCCSEE--EEESCCC--SSCCCC--CCSSCCEEEEESCSSCEEC--C-CCCCT
T ss_pred             cccCCCCCEEEe-cCccchhhhhccccccCCEE--EcccccC--cccccC--CCCccceeeccCCcCccch--h-hccCC
Confidence            334567777777 65555444344456677777  6666  3  222222  6677777777666322100  0 11334


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc--eeecCCCCeeEEEEEEEeCcc----ccCCC------
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK--FVVHDLNSLTDVILDIVYGEW----SRVDP------  265 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~----~~~~~------  265 (341)
                      +|+.|.+.+|.-...  ..........++|++|.+.+.....  ..+..+++|+.+.+.-.....    ..+..      
T Consensus       351 ~L~~L~ls~n~l~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          351 SLSYLDLSRNALSFS--GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TCCEEECCSSCEEEE--EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCEEECcCCccCCC--cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            556665555210000  0000000123455555554433211  123344444444432110000    00000      


Q ss_pred             -------c-cc-hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEe
Q 047191          266 -------N-RS-IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR  336 (341)
Q Consensus       266 -------~-~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~  336 (341)
                             . .. ...+..+++++.|.++.+.+...  .....+..+++|++|++..+.... .....+..+++|+.|.+.
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN--TLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc--chHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECC
Confidence                   0 00 23345566666766666543320  011123356778888887762111 112335678888888877


Q ss_pred             eee
Q 047191          337 KVI  339 (341)
Q Consensus       337 ~~~  339 (341)
                      +-.
T Consensus       506 ~N~  508 (606)
T 3vq2_A          506 HNN  508 (606)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.12  E-value=3.7e-07  Score=85.35  Aligned_cols=202  Identities=15%  Similarity=0.084  Sum_probs=109.2

Q ss_pred             ccccccCcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191          118 IELYASPSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV  193 (341)
Q Consensus       118 ~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~  193 (341)
                      ..+..+++|+.|+| ++..+...+  ...++++|++|  +|.+  ++.-. ...+.++++|+.|+|.++.-..+.. ...
T Consensus        82 ~~~~~l~~L~~L~L-s~n~i~~i~~~~~~~l~~L~~L--~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~-~~~  156 (440)
T 3zyj_A           82 NSFKHLRHLEILQL-SRNHIRTIEIGAFNGLANLNTL--ELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPS-YAF  156 (440)
T ss_dssp             TTTSSCSSCCEEEC-CSSCCCEECGGGGTTCSSCCEE--ECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCEECT-TTT
T ss_pred             HHhhCCCCCCEEEC-CCCcCCccChhhccCCccCCEE--ECCCCcCCeeC-HhHhhccccCceeeCCCCcccccCH-HHh
Confidence            34455677777777 554443221  23456777777  7766  33211 1235567777777777664311000 000


Q ss_pred             EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHHh
Q 047191          194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLL  272 (341)
Q Consensus       194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l  272 (341)
                      -..++|+.|.+..|.......   ....-..++|++|.+.+..... ..+..+++|+.+++.-.....  ..    ...+
T Consensus       157 ~~l~~L~~L~l~~~~~l~~i~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~~  227 (440)
T 3zyj_A          157 NRIPSLRRLDLGELKRLSYIS---EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA--IR----PGSF  227 (440)
T ss_dssp             TTCTTCCEEECCCCTTCCEEC---TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE--EC----TTTT
T ss_pred             hhCcccCEeCCCCCCCcceeC---cchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc--cC----hhhh
Confidence            123567777777642211100   0000125678888887665443 235566677776653211110  00    3456


Q ss_pred             hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .++++++.|.++.+.+..+.   ...+..+++|++|+|..+... ......+..+++|+.|.+.+
T Consensus       228 ~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          228 QGLMHLQKLWMIQSQIQVIE---RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             TTCTTCCEEECTTCCCCEEC---TTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCS
T ss_pred             ccCccCCEEECCCCceeEEC---hhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCC
Confidence            67888899988877654331   123446778999999887211 11123467789999998865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.11  E-value=1.9e-06  Score=79.12  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             ecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCC
Q 047191          223 TAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWF  299 (341)
Q Consensus       223 ~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~  299 (341)
                      ..|+|++|.+++......   .+..+++|+.+++.-.....     .  ......+++++.|.++.+.+..+.    ..+
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~--~~~~~~l~~L~~L~L~~n~l~~~~----~~~  314 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----L--NLYGQPIPTLKVLDLSHNHLLHVE----RNQ  314 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-----E--ECSSSCCTTCCEEECCSSCCCCCG----GGH
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-----c--CcccCCCCCCCEEECCCCcceecC----ccc
Confidence            357888888887655433   35667888877764321111     0  122346788888888877554221    112


Q ss_pred             CCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEee
Q 047191          300 PALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       300 ~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..+++|++|++..+.. ...     +..+|+|+.|++.+
T Consensus       315 ~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~  348 (390)
T 3o6n_A          315 PQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSH  348 (390)
T ss_dssp             HHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCS
T ss_pred             cccCcCCEEECCCCccceeC-----chhhccCCEEEcCC
Confidence            3567888888887722 221     66778888888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.11  E-value=1.6e-06  Score=77.09  Aligned_cols=166  Identities=15%  Similarity=0.072  Sum_probs=97.3

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|+.|+| +++.+...+...++++|+.|  +|.+  +++-.   -+..++.|+.|.+.++.-.+..  . --..+
T Consensus        59 ~~~l~~L~~L~L-~~n~i~~~~~~~~l~~L~~L--~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~  129 (308)
T 1h6u_A           59 VQYLNNLIGLEL-KDNQITDLAPLKNLTKITEL--ELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVT--P-LAGLS  129 (308)
T ss_dssp             GGGCTTCCEEEC-CSSCCCCCGGGTTCCSCCEE--ECCSCCCSCCG---GGTTCTTCCEEECTTSCCCCCG--G-GTTCT
T ss_pred             hhccCCCCEEEc-cCCcCCCChhHccCCCCCEE--EccCCcCCCch---hhcCCCCCCEEECCCCCCCCch--h-hcCCC
Confidence            445677888888 66655443335567778888  7777  43321   2667788888888777543322  2 11335


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +|+.|.+.+|.-...     .. .-..++|++|.+.+...... .+..+++|+.+++.-.....        ...+..++
T Consensus       130 ~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--------~~~l~~l~  195 (308)
T 1h6u_A          130 NLQVLYLDLNQITNI-----SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--------ISPLASLP  195 (308)
T ss_dssp             TCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CGGGGGCT
T ss_pred             CCCEEECCCCccCcC-----cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc--------ChhhcCCC
Confidence            677777777421111     11 12457788888876654332 25667777776654221111        22266778


Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      +++.|.++.+.+..+.     .+..+++|++|++..+
T Consensus       196 ~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          196 NLIEVHLKNNQISDVS-----PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             TCCEEECTTSCCCBCG-----GGTTCTTCCEEEEEEE
T ss_pred             CCCEEEccCCccCccc-----cccCCCCCCEEEccCC
Confidence            8888888876654331     1335678888888876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.10  E-value=5.7e-07  Score=90.14  Aligned_cols=125  Identities=14%  Similarity=0.085  Sum_probs=75.9

Q ss_pred             cccccCcceEEEEeeeeeecc-CCC-c-ccCCchhhhhhhccC--CCcchHHH--HHhcCCccceeEEeeeecCCCCcee
Q 047191          119 ELYASPSVEVLKLMSDFLLKV-PAG-G-TCFPNVKILTMQLES--PDNILTEK--LFCSCPSLEELSIQAYLNDEGPTTK  191 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~-~~~-~-~~~~~L~~L~~~L~~--~~~~~l~~--ll~~cp~Le~L~L~~c~~~~~~~~~  191 (341)
                      .+..+++|++|+| +++.+.. .+. . ..+++|++|  +|.+  ++......  .+.+|+.|+.|++.++.-.+..  .
T Consensus       121 ~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L--~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~  195 (768)
T 3rgz_A          121 SLGSCSGLKFLNV-SSNTLDFPGKVSGGLKLNSLEVL--DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--D  195 (768)
T ss_dssp             GGGGCTTCCEEEC-CSSEEECCSSCCSCCCCTTCSEE--ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--B
T ss_pred             HHhCCCCCCEEEC-cCCccCCcCCHHHhccCCCCCEE--ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC--C
Confidence            6667888888888 6555532 212 2 467889999  8888  54433332  3778899999999887543212  1


Q ss_pred             EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc---eeecCCCCeeEEEEE
Q 047191          192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK---FVVHDLNSLTDVILD  254 (341)
Q Consensus       192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~---~~~~~~~~L~~~~l~  254 (341)
                      . -..++|+.|++..|.-.+.    ... .-..++|++|.+.+.....   ..+..+++|+.+++.
T Consensus       196 ~-~~l~~L~~L~Ls~n~l~~~----~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          196 V-SRCVNLEFLDVSSNNFSTG----IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             C-TTCTTCCEEECCSSCCCSC----CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             c-ccCCcCCEEECcCCcCCCC----Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            1 2456788888877422111    111 2246778888887655432   135566777766653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.09  E-value=1.1e-07  Score=85.11  Aligned_cols=61  Identities=15%  Similarity=0.202  Sum_probs=35.8

Q ss_pred             hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEe
Q 047191          272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR  336 (341)
Q Consensus       272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~  336 (341)
                      +..+++++.|.++.+.+..+.    ..+..+++|++|++..+......+..++..+|+|+.|.+.
T Consensus       210 ~~~l~~L~~L~L~~N~l~~l~----~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          210 FQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             GGGGTTCSEEECTTSCCCEEC----TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             hcccCcccEEECcCCcccchh----hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            456677777777766544321    1233566777777776643434566666777776665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.08  E-value=3.4e-07  Score=88.23  Aligned_cols=59  Identities=20%  Similarity=0.112  Sum_probs=32.9

Q ss_pred             cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      |..+..+ +|++|++ .++.+...+. ..+++|++|  .+.+  .... ...  ..+|.|+.|++.++.
T Consensus       298 ~~~~~~~-~L~~L~l-~~n~~~~l~~-~~l~~L~~L--~l~~n~~~~~-~~~--~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          298 KDFSYNF-GWQHLEL-VNCKFGQFPT-LKLKSLKRL--TFTSNKGGNA-FSE--VDLPSLEFLDLSRNG  358 (570)
T ss_dssp             CBCCSCC-CCSEEEE-ESCBCSSCCB-CBCSSCCEE--EEESCBSCCB-CCC--CBCTTCCEEECCSSC
T ss_pred             hhhhccC-CccEEee-ccCcccccCc-ccccccCEE--eCcCCccccc-ccc--ccCCCCCEEeCcCCc
Confidence            5555556 8888888 7666654422 456667766  6665  1111 000  456666666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.07  E-value=1.8e-06  Score=77.36  Aligned_cols=199  Identities=15%  Similarity=0.073  Sum_probs=117.0

Q ss_pred             cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCc-eeEE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPT-TKFV  193 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~-~~l~  193 (341)
                      |..+..+++|++|+| ++..+...+.. -+++|+.|  .+.+  ++. .....+.+++.|+.|.+.++.-..... +..-
T Consensus        93 ~~~~~~l~~L~~L~L-s~n~l~~l~~~-~~~~L~~L--~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  167 (330)
T 1xku_A           93 PGAFAPLVKLERLYL-SKNQLKELPEK-MPKTLQEL--RVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAF  167 (330)
T ss_dssp             TTTTTTCTTCCEEEC-CSSCCSBCCSS-CCTTCCEE--ECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred             HHHhcCCCCCCEEEC-CCCcCCccChh-hcccccEE--ECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence            555666788888888 66655544222 24788888  8887  443 233457889999999998874321000 0001


Q ss_pred             EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchH
Q 047191          194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQ  270 (341)
Q Consensus       194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~  270 (341)
                      -..++|+.|.+..+.-...    ...   ..++|++|.+.+......   .+..+++|+.+++.......  ..    ..
T Consensus       168 ~~l~~L~~L~l~~n~l~~l----~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~----~~  234 (330)
T 1xku_A          168 QGMKKLSYIRIADTNITTI----PQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--VD----NG  234 (330)
T ss_dssp             GGCTTCCEEECCSSCCCSC----CSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--EC----TT
T ss_pred             cCCCCcCEEECCCCccccC----Ccc---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce--eC----hh
Confidence            1346888888887421111    001   127899999987654433   36677888887764321111  00    33


Q ss_pred             HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC---ChhHHH--HHHhcCCCCCcEEEee
Q 047191          271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI---GWAVLP--VILSSSVHLQSLVLRK  337 (341)
Q Consensus       271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~---~~~~l~--~ll~~cp~L~~L~l~~  337 (341)
                      .+..+++++.|.++.+.+..+    ...+..+++|++|++..+..   ......  ......+.|+.|.+.+
T Consensus       235 ~~~~l~~L~~L~L~~N~l~~l----p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~  302 (330)
T 1xku_A          235 SLANTPHLRELHLNNNKLVKV----PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  302 (330)
T ss_dssp             TGGGSTTCCEEECCSSCCSSC----CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             hccCCCCCCEEECCCCcCccC----ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence            567788999999988765432    11234677899999987711   111110  0112347777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.07  E-value=1.7e-07  Score=93.92  Aligned_cols=205  Identities=19%  Similarity=0.088  Sum_probs=120.4

Q ss_pred             cccccccCcceEEEEeeeeeec--cCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCce
Q 047191          117 QIELYASPSVEVLKLMSDFLLK--VPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTT  190 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~--~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~  190 (341)
                      |..+..+++|++|+| +++.+.  .+.  ....+++|++|  +|.+  ++...-..++.+++.|+.|++.++.-.+..+.
T Consensus        93 ~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~l~~l~~L~~L--~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  169 (768)
T 3rgz_A           93 VSGFKCSASLTSLDL-SRNSLSGPVTTLTSLGSCSGLKFL--NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV  169 (768)
T ss_dssp             CCCCCCCTTCCEEEC-CSSEEEEEGGGGGGGGGCTTCCEE--ECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred             chhhccCCCCCEEEC-CCCcCCCcCCChHHHhCCCCCCEE--ECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence            466777899999999 766553  232  35578999999  9987  43332233346789999999998753211100


Q ss_pred             eE--EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc--eeecCCCCeeEEEEEEEeCccccCCCc
Q 047191          191 KF--VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK--FVVHDLNSLTDVILDIVYGEWSRVDPN  266 (341)
Q Consensus       191 ~l--~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~~~  266 (341)
                      .+  .-..++|+.|++..|.-.+.     ... ...++|++|.+++.....  ..+.++++|+.+++.-.....      
T Consensus       170 ~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~------  237 (768)
T 3rgz_A          170 GWVLSDGCGELKHLAISGNKISGD-----VDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG------  237 (768)
T ss_dssp             HHHHTTCCTTCCEEECCSSEEESC-----CBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS------
T ss_pred             hhhhhccCCCCCEEECCCCccccc-----CCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC------
Confidence            00  11357899999988421111     111 357899999998775432  237788999988775322111      


Q ss_pred             cc-hHHhhcCCCceEEEEecchhhhcc-c-------------cccC-CCC-----CCCcccEEEEEEcCCChhHHHHHHh
Q 047191          267 RS-IQLLQQLNNTTSLTVSYGVLCALD-H-------------AYHK-WFP-----ALSYLQHLEVAVGAIGWAVLPVILS  325 (341)
Q Consensus       267 ~~-~~~l~~~~~l~~L~l~~~~~~~~~-~-------------~~~~-~~~-----~f~~L~~L~l~~~~~~~~~l~~ll~  325 (341)
                       . ...+..+++++.|.++.+.+.... .             .... .+|     .+++|++|++..+... ..+...+.
T Consensus       238 -~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~  315 (768)
T 3rgz_A          238 -DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-GAVPPFFG  315 (768)
T ss_dssp             -CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE-ECCCGGGG
T ss_pred             -cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC-CccchHHh
Confidence             1 445667788888888765432110 0             0000 111     1356666666654110 01223356


Q ss_pred             cCCCCCcEEEeee
Q 047191          326 SSVHLQSLVLRKV  338 (341)
Q Consensus       326 ~cp~L~~L~l~~~  338 (341)
                      .+++|+.|++.+-
T Consensus       316 ~l~~L~~L~L~~n  328 (768)
T 3rgz_A          316 SCSLLESLALSSN  328 (768)
T ss_dssp             GCTTCCEEECCSS
T ss_pred             cCCCccEEECCCC
Confidence            7788888877653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.06  E-value=5.9e-06  Score=78.73  Aligned_cols=63  Identities=14%  Similarity=0.115  Sum_probs=41.3

Q ss_pred             hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191          273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      ..+++++.|.++.+.+...   ....+..+++|++|++..+ -.+...+...+..+++|+.|++.+-
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDT---VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTT---TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             hhCCcccEEEeECCccChh---hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence            4667777777776654321   1122346778888888877 3344456667888889988888653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.05  E-value=4.4e-06  Score=80.41  Aligned_cols=206  Identities=14%  Similarity=0.039  Sum_probs=104.5

Q ss_pred             cccccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV  193 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~  193 (341)
                      |..+..+++|+.|++ .++.+...+ ....+ +|+.|  .+.+  ++.  +..  ..++.|+.|.+.++......  .. 
T Consensus       275 ~~~~~~l~~L~~L~l-~~~~l~~l~~~~~~~-~L~~L--~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~--~~-  343 (570)
T 2z63_A          275 IDLFNCLTNVSSFSL-VSVTIERVKDFSYNF-GWQHL--ELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAF--SE-  343 (570)
T ss_dssp             TTTTGGGTTCSEEEE-ESCEECSCCBCCSCC-CCSEE--EEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBC--CC-
T ss_pred             hhhhcCcCcccEEEe-cCccchhhhhhhccC-CccEE--eeccCcccc--cCc--ccccccCEEeCcCCcccccc--cc-
Confidence            344455788999999 766665433 23445 88888  8877  332  111  47899999999888653211  11 


Q ss_pred             EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCCCeeEEEEEEEeCcc----ccCCC--
Q 047191          194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIVYGEW----SRVDP--  265 (341)
Q Consensus       194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~----~~~~~--  265 (341)
                      ...++|+.|.+..|.-...  ..........++|++|.+.+......  .+..+++|+.+.+.-.....    ..+..  
T Consensus       344 ~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  421 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  421 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEE--EEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred             ccCCCCCEEeCcCCccCcc--ccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence            3456777777776311000  00000001245566666655432211  14455555555442110000    00000  


Q ss_pred             -----------cc-c-hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCc
Q 047191          266 -----------NR-S-IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQS  332 (341)
Q Consensus       266 -----------~~-~-~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~  332 (341)
                                 .. . ...+.++++++.|.++.+.+.....+  ..+..+++|++|++..+.... .....+..+|+|+.
T Consensus       422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~  498 (570)
T 2z63_A          422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQV  498 (570)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred             CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCcccc-CChhhhhcccCCCE
Confidence                       00 0 23445666777777766544310011  223356788888887762111 11233567888888


Q ss_pred             EEEeee
Q 047191          333 LVLRKV  338 (341)
Q Consensus       333 L~l~~~  338 (341)
                      |++.+-
T Consensus       499 L~l~~n  504 (570)
T 2z63_A          499 LNMASN  504 (570)
T ss_dssp             EECCSS
T ss_pred             EeCCCC
Confidence            888763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.05  E-value=3.9e-06  Score=85.01  Aligned_cols=58  Identities=21%  Similarity=0.197  Sum_probs=32.0

Q ss_pred             CCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchh
Q 047191          225 PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVL  288 (341)
Q Consensus       225 p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~  288 (341)
                      ++|+.|.+++......   .+..+++|+.+++.........      ...+.++++++.|.++.+.+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA------DEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC------TTTTTTCSSCCEEEEESCCC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC------hHHhcCCCCCCEEECCCCCC
Confidence            5677777765543322   2556677777666532211100      23455667777777776554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.04  E-value=7.5e-08  Score=87.74  Aligned_cols=204  Identities=14%  Similarity=0.095  Sum_probs=102.5

Q ss_pred             ccC-cceEEEEeeeeeeccCC--Cccc-----CCchhhhhhhccC--CCc---chHHHHHhcC-CccceeEEeeeecCCC
Q 047191          122 ASP-SVEVLKLMSDFLLKVPA--GGTC-----FPNVKILTMQLES--PDN---ILTEKLFCSC-PSLEELSIQAYLNDEG  187 (341)
Q Consensus       122 ~~~-~L~~L~L~~~~~l~~~~--~~~~-----~~~L~~L~~~L~~--~~~---~~l~~ll~~c-p~Le~L~L~~c~~~~~  187 (341)
                      .++ +|++|+| +++.+....  ....     +++|++|  +|.+  +++   ..+...+..+ +.|+.|++.++.-...
T Consensus        48 ~~~~~L~~L~L-s~N~l~~~~~~~l~~~l~~~~~~L~~L--~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           48 NTPASVTSLNL-SGNSLGFKNSDELVQILAAIPANVTSL--NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             TCCTTCCEEEC-CSSCGGGSCHHHHHHHHHTSCTTCCEE--ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             hCCCceeEEEC-cCCCCCHHHHHHHHHHHhccCCCccEE--ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            355 7888888 666654431  1112     2778888  7777  443   3444555566 7888888877753221


Q ss_pred             CceeEE--Ee--CCCcceEEEeeecCccccccCceeE---EEec-CCceEEEeeccccCcee-------ecCC-CCeeEE
Q 047191          188 PTTKFV--IS--SSTLKQCTLWVETEGEMFTQAEYKV---RITA-PSLERLHIMSDIFGKFV-------VHDL-NSLTDV  251 (341)
Q Consensus       188 ~~~~l~--i~--~~sL~~L~i~~c~~~~~~~~~~~~~---~~~~-p~L~~l~~~~~~~~~~~-------~~~~-~~L~~~  251 (341)
                      ....+.  +.  .++|+.|++.+|.-..   .....+   .... ++|++|.+++.......       +... ++|+.+
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L  201 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGI---KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL  201 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGG---SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCH---HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence            200000  01  2478888887742110   000000   0112 37888888766543211       2334 367776


Q ss_pred             EEEEEeCccccCCCccc-hHHhhc-CCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEc---CCChhHHHHHHh
Q 047191          252 ILDIVYGEWSRVDPNRS-IQLLQQ-LNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVG---AIGWAVLPVILS  325 (341)
Q Consensus       252 ~l~~~~~~~~~~~~~~~-~~~l~~-~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~---~~~~~~l~~ll~  325 (341)
                      ++.........   ... ...+.. .++++.|.++.+.+....... ...+..+++|+.|++..+   ......+..+.+
T Consensus       202 ~Ls~N~i~~~~---~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~  278 (362)
T 3goz_A          202 DLSANLLGLKS---YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA  278 (362)
T ss_dssp             ECTTSCGGGSC---HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred             ECCCCCCChhH---HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence            65322111100   001 223333 357888888776543321101 112235667888888777   345555666666


Q ss_pred             cCCCCCcEE
Q 047191          326 SSVHLQSLV  334 (341)
Q Consensus       326 ~cp~L~~L~  334 (341)
                      ..++++.|.
T Consensus       279 ~~~~l~~L~  287 (362)
T 3goz_A          279 AFPNIQKII  287 (362)
T ss_dssp             TSTTCCEEE
T ss_pred             HhccCCceE
Confidence            666665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.01  E-value=3.9e-06  Score=81.58  Aligned_cols=99  Identities=16%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             ecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCC
Q 047191          223 TAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWF  299 (341)
Q Consensus       223 ~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~  299 (341)
                      ..|+|++|.+++......   .+..+++|+.+++.-.....     .  ......+++++.|.++.+.+..+.    ..+
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----l--~~~~~~l~~L~~L~Ls~N~l~~i~----~~~  320 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----L--NLYGQPIPTLKVLDLSHNHLLHVE----RNQ  320 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-----E--ECSSSCCTTCCEEECCSSCCCCCG----GGH
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-----C--CcccccCCCCcEEECCCCCCCccC----ccc
Confidence            367888888887665433   35677888877764211110     0  222346788889988877654221    112


Q ss_pred             CCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191          300 PALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       300 ~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..+++|+.|+|..+ -....     +..+|+|+.|.+.+
T Consensus       321 ~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~  354 (597)
T 3oja_B          321 PQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSH  354 (597)
T ss_dssp             HHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCS
T ss_pred             ccCCCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeC
Confidence            35778888888887 22221     66778888888765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.01  E-value=9.5e-07  Score=76.91  Aligned_cols=172  Identities=17%  Similarity=0.124  Sum_probs=101.7

Q ss_pred             CcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          124 PSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ++|++|+| ++..+...+  ...++++|++|  +|.+  ++. .-..++.+++.|+.|.+.++.-..... ...-..++|
T Consensus        37 ~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDL-QSNKLSSLPSKAFHRLTKLRLL--YLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNL  111 (270)
T ss_dssp             TTCSEEEC-CSSCCSCCCTTSSSSCTTCCEE--ECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSC
T ss_pred             CCCCEEEC-cCCCCCeeCHHHhcCCCCCCEE--ECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCC
Confidence            56888999 766554432  34567889999  8877  332 112335678999999998875432110 011134678


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +.|.+.++.-...    .....-..++|++|.+++......   .+..+++|+.+++.-.....  ..    ...+..++
T Consensus       112 ~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~----~~~~~~l~  181 (270)
T 2o6q_A          112 AELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--VP----EGAFDKLT  181 (270)
T ss_dssp             CEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CC----TTTTTTCT
T ss_pred             CEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--eC----hhHhccCC
Confidence            8888887321111    000011368899999987654432   25667888887764221111  00    33456778


Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      +++.|.++.+.+..+.   ...+..+++|+.|++..+
T Consensus       182 ~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          182 ELKTLKLDNNQLKRVP---EGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred             CcCEEECCCCcCCcCC---HHHhccccCCCEEEecCC
Confidence            8899988877554321   112345778888888876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.00  E-value=4.3e-07  Score=80.96  Aligned_cols=63  Identities=8%  Similarity=0.005  Sum_probs=31.8

Q ss_pred             cccccccCcceEEEEeeeeeec-cCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          117 QIELYASPSVEVLKLMSDFLLK-VPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~-~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      |..+..+++|++|+| ++..+. ..| ....+++|++|  +|.+  ++. .+...+..+++|+.|.+.++.
T Consensus        94 p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L--~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYI-THTNVSGAIPDFLSQIKTLVTL--DFSYNALSG-TLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             CGGGGGCTTCSEEEE-EEECCEEECCGGGGGCTTCCEE--ECCSSEEES-CCCGGGGGCTTCCEEECCSSC
T ss_pred             ChhHhcCCCCCEEEC-cCCeeCCcCCHHHhCCCCCCEE--eCCCCccCC-cCChHHhcCCCCCeEECcCCc
Confidence            445555666666666 544432 222 23445666666  6655  221 111224556666666666553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.98  E-value=1.5e-05  Score=75.80  Aligned_cols=205  Identities=13%  Similarity=0.045  Sum_probs=90.9

Q ss_pred             CcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          124 PSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ++|++|+| +++.+...+  ...++++|++|  +|.+  ++... ...+.++++|+.|++.++.-..++  ..  ..++|
T Consensus        21 ~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L--~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp--~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNI-SQNYISELWTSDILSLSKLRIL--IISHNRIQYLD-ISVFKFNQELEYLDLSHNKLVKIS--CH--PTVNL   92 (520)
T ss_dssp             TTCSEEEC-CSSCCCCCCHHHHTTCTTCCEE--ECCSSCCCEEE-GGGGTTCTTCCEEECCSSCCCEEE--CC--CCCCC
T ss_pred             ccccEEEC-CCCcccccChhhccccccccEE--ecCCCccCCcC-hHHhhcccCCCEEecCCCceeecC--cc--ccCCc
Confidence            56666666 555443321  23456666666  6666  33211 122455666666666665432111  11  34556


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCe--eEEEEEEEeC--ccc---cCCCc------
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSL--TDVILDIVYG--EWS---RVDPN------  266 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L--~~~~l~~~~~--~~~---~~~~~------  266 (341)
                      +.|.+.+|.-...   ......-..++|++|.+++.......+..+++|  +.+.+.....  ...   .+...      
T Consensus        93 ~~L~L~~N~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~  169 (520)
T 2z7x_B           93 KHLDLSFNAFDAL---PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH  169 (520)
T ss_dssp             SEEECCSSCCSSC---CCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred             cEEeccCCccccc---cchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEE
Confidence            6666666311110   000001124566666666544333334444445  5544433211  000   00000      


Q ss_pred             ----------cc-hHHhhcCCCceEEEEecch----hhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHh--cCCC
Q 047191          267 ----------RS-IQLLQQLNNTTSLTVSYGV----LCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILS--SSVH  329 (341)
Q Consensus       267 ----------~~-~~~l~~~~~l~~L~l~~~~----~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~--~cp~  329 (341)
                                .. ...+..+++++.|.++.+.    ...+. .....+..+++|++|.+..+......+..+..  .+++
T Consensus       170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  248 (520)
T 2z7x_B          170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL-SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT  248 (520)
T ss_dssp             EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH-HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred             EEeccCcchhhhhhhhhhcccceeeccccccccccccceee-cchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence                      00 1223345666666666542    00000 00011234567777777766322222222222  2468


Q ss_pred             CCcEEEeeeee
Q 047191          330 LQSLVLRKVII  340 (341)
Q Consensus       330 L~~L~l~~~~~  340 (341)
                      |+.|.+.+-.|
T Consensus       249 L~~L~l~~n~l  259 (520)
T 2z7x_B          249 VWYFSISNVKL  259 (520)
T ss_dssp             CSEEEEEEEEE
T ss_pred             ccEEEeecccc
Confidence            88888877544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.98  E-value=2.3e-06  Score=80.24  Aligned_cols=203  Identities=15%  Similarity=0.055  Sum_probs=123.6

Q ss_pred             cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF  192 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l  192 (341)
                      |..+..+++|+.|+| ++..+.. ++ ...++++|++|  +|.+  ++.- -...+.++++|+.|+|.++.-..+.. ..
T Consensus        92 ~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L--~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~-~~  166 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQL-GRNSIRQIEVGAFNGLASLNTL--ELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPS-YA  166 (452)
T ss_dssp             TTTTTTCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEE--ECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECT-TT
T ss_pred             HHHcCCCCCCCEEEC-CCCccCCcChhhccCcccCCEE--ECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCH-hH
Confidence            445666889999999 6555532 22 34568899999  8888  3321 12335678999999998875321110 00


Q ss_pred             EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHH
Q 047191          193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQL  271 (341)
Q Consensus       193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~  271 (341)
                      .-..++|+.|.+..|.......   ....-..++|++|.+++..... ..+..+++|+.+++.-.....  ..    ...
T Consensus       167 ~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~  237 (452)
T 3zyi_A          167 FNRVPSLMRLDLGELKKLEYIS---EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE--IR----PGS  237 (452)
T ss_dssp             TTTCTTCCEEECCCCTTCCEEC---TTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE--EC----GGG
T ss_pred             HhcCCcccEEeCCCCCCccccC---hhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc--cC----ccc
Confidence            1134688888888752211100   0000135789999998765543 246677788877663211111  00    455


Q ss_pred             hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      +.++++++.|.++.+.+..+.   ...+..+++|++|+|..+... ......+..+++|+.|++.+
T Consensus       238 ~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQVSLIE---RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             GTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCS
T ss_pred             ccCccCCCEEEeCCCcCceEC---HHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccC
Confidence            778899999999987654331   123446789999999887211 11123457789999998865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.98  E-value=4.3e-07  Score=85.08  Aligned_cols=63  Identities=21%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .+..+++++.|.++.+.+..+.   ...+..+++|++|++..+..... ...-+..+|+|+.|++.+
T Consensus       318 ~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~  380 (455)
T 3v47_A          318 AFWGLTHLLKLNLSQNFLGSID---SRMFENLDKLEVLDLSYNHIRAL-GDQSFLGLPNLKELALDT  380 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC---GGGGTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred             HhcCcccCCEEECCCCccCCcC---hhHhcCcccCCEEECCCCccccc-ChhhccccccccEEECCC
Confidence            3455667777777665443221   11123566777777776521110 112355678888887765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.97  E-value=5.1e-06  Score=79.67  Aligned_cols=70  Identities=19%  Similarity=0.068  Sum_probs=42.5

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      ..+.+.+++++.|.++.+.+..........+..+++|+.|++..+ -.+.......+..+++|+.|++.+-
T Consensus       327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred             HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence            455567888888888876543211000112335678888888776 2233323355778888888887653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.96  E-value=4.2e-06  Score=69.12  Aligned_cols=55  Identities=20%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191          122 ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY  182 (341)
Q Consensus       122 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c  182 (341)
                      .+++|++|++ ++..+...+....+++|++|  .+.+  +++-.   .+..+|+|+.|.+.++
T Consensus        42 ~l~~L~~L~l-~~n~i~~l~~l~~l~~L~~L--~l~~n~~~~~~---~l~~l~~L~~L~l~~n   98 (197)
T 4ezg_A           42 QMNSLTYITL-ANINVTDLTGIEYAHNIKDL--TINNIHATNYN---PISGLSNLERLRIMGK   98 (197)
T ss_dssp             HHHTCCEEEE-ESSCCSCCTTGGGCTTCSEE--EEESCCCSCCG---GGTTCTTCCEEEEECT
T ss_pred             hcCCccEEec-cCCCccChHHHhcCCCCCEE--EccCCCCCcch---hhhcCCCCCEEEeECC
Confidence            3567788888 66555543345556677777  6666  22211   2555666666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.94  E-value=3e-07  Score=87.25  Aligned_cols=76  Identities=18%  Similarity=0.147  Sum_probs=38.7

Q ss_pred             ccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEe
Q 047191          118 IELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVIS  195 (341)
Q Consensus       118 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~  195 (341)
                      ..+..+++|+.|+| +++.+...+....+++|+.|  +|.+  +++-      ...|.|+.|.+.++.-.+..    .-.
T Consensus        52 ~~~~~l~~L~~L~L-s~N~l~~~~~l~~l~~L~~L--~Ls~N~l~~l------~~~~~L~~L~L~~N~l~~~~----~~~  118 (487)
T 3oja_A           52 ADLAPFTKLELLNL-SSNVLYETLDLESLSTLRTL--DLNNNYVQEL------LVGPSIETLHAANNNISRVS----CSR  118 (487)
T ss_dssp             GGGTTCTTCCEEEC-TTSCCEEEEECTTCTTCCEE--ECCSSEEEEE------EECTTCCEEECCSSCCCCEE----ECC
T ss_pred             HHHhCCCCCCEEEe-eCCCCCCCcccccCCCCCEE--EecCCcCCCC------CCCCCcCEEECcCCcCCCCC----ccc
Confidence            34455677777777 54444321124556777777  6666  3321      12366666666665432211    112


Q ss_pred             CCCcceEEEee
Q 047191          196 SSTLKQCTLWV  206 (341)
Q Consensus       196 ~~sL~~L~i~~  206 (341)
                      .++|+.|.+.+
T Consensus       119 l~~L~~L~L~~  129 (487)
T 3oja_A          119 GQGKKNIYLAN  129 (487)
T ss_dssp             CSSCEEEECCS
T ss_pred             cCCCCEEECCC
Confidence            34555555555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.93  E-value=2.8e-07  Score=89.68  Aligned_cols=36  Identities=19%  Similarity=0.070  Sum_probs=18.7

Q ss_pred             cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES  158 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~  158 (341)
                      .+..+++|++|++ .++.+...|.. .+++|+.|  .+.+
T Consensus       302 ~l~~~~~L~~L~l-~~n~l~~lp~~-~l~~L~~L--~l~~  337 (606)
T 3vq2_A          302 DVPKHFKWQSLSI-IRCQLKQFPTL-DLPFLKSL--TLTM  337 (606)
T ss_dssp             CCCTTCCCSEEEE-ESCCCSSCCCC-CCSSCCEE--EEES
T ss_pred             hccccccCCEEEc-ccccCcccccC-CCCcccee--eccC
Confidence            3444566777777 55554433322 45555555  4444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.92  E-value=1.1e-06  Score=77.41  Aligned_cols=168  Identities=15%  Similarity=0.090  Sum_probs=71.7

Q ss_pred             CcceEEEEeeeeeeccC--CCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          124 PSVEVLKLMSDFLLKVP--AGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ++++.|+| ++..+...  .....+++|+.|  .|.+  ++.-..   ...++.|+.|++.++.-..+.  ...-..++|
T Consensus        31 ~~l~~L~L-~~N~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L  102 (290)
T 1p9a_G           31 KDTTILHL-SENLLYTFSLATLMPYTRLTQL--NLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLP--LLGQTLPAL  102 (290)
T ss_dssp             TTCCEEEC-TTSCCSEEEGGGGTTCTTCCEE--ECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCC--CCTTTCTTC
T ss_pred             CCCCEEEc-CCCcCCccCHHHhhcCCCCCEE--ECCCCccCcccC---CCCCCcCCEEECCCCcCCcCc--hhhccCCCC
Confidence            45566666 43333211  123345666666  6655  322111   145566666666655332222  111123456


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +.|.+..+.-...    ....--..++|++|.+++......   .+..+++|+.+++.-.....  +.    ...+..++
T Consensus       103 ~~L~l~~N~l~~l----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~----~~~~~~l~  172 (290)
T 1p9a_G          103 TVLDVSFNRLTSL----PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LP----AGLLNGLE  172 (290)
T ss_dssp             CEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC--CC----TTTTTTCT
T ss_pred             CEEECCCCcCccc----CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc--cC----HHHhcCcC
Confidence            6666655211100    000001235566666655433322   13344555555442111000  00    33445566


Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      +++.|.++.+.++.+.    ..+...++|++|.+..+
T Consensus       173 ~L~~L~L~~N~l~~ip----~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          173 NLDTLLLQENSLYTIP----KGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TCCEEECCSSCCCCCC----TTTTTTCCCSEEECCSC
T ss_pred             CCCEEECCCCcCCccC----hhhcccccCCeEEeCCC
Confidence            6666666665544221    11223445666666655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.91  E-value=2.3e-06  Score=74.92  Aligned_cols=179  Identities=17%  Similarity=0.104  Sum_probs=102.7

Q ss_pred             ccccccCcceEEEEeeeeeecc--CCCcccCCchhhhhhhccC-C-CcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191          118 IELYASPSVEVLKLMSDFLLKV--PAGGTCFPNVKILTMQLES-P-DNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV  193 (341)
Q Consensus       118 ~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~~~L~~-~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~  193 (341)
                      ..+..+++|+.|+| ++..+..  +....++++|++|  +|.+ - -.......+.++++|+.|++.++.-....+ ..-
T Consensus        50 ~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~  125 (285)
T 1ozn_A           50 ASFRACRNLTILWL-HSNVLARIDAAAFTGLALLEQL--DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLF  125 (285)
T ss_dssp             TTTTTCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEE--ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTT
T ss_pred             HHcccCCCCCEEEC-CCCccceeCHhhcCCccCCCEE--eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH-hHh
Confidence            34555788888888 6554432  2234567888888  8776 2 122113336678888888888875432210 001


Q ss_pred             EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchH
Q 047191          194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQ  270 (341)
Q Consensus       194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~  270 (341)
                      -..++|+.|.+.++.-...    .....-..++|++|.+.+......   .+..+++|+.+++.-.....  ..    ..
T Consensus       126 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~  195 (285)
T 1ozn_A          126 RGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH--VH----PH  195 (285)
T ss_dssp             TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--EC----TT
T ss_pred             hCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc--cC----Hh
Confidence            1346788888877421111    000011357888888887654432   25667788877664321111  00    33


Q ss_pred             HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      .+..+++++.|.++.+.+..+...   .+..+++|++|++..+
T Consensus       196 ~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          196 AFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEEECCSS
T ss_pred             HccCcccccEeeCCCCcCCcCCHH---HcccCcccCEEeccCC
Confidence            456788999999988765433111   1235778999999887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=2.2e-06  Score=86.63  Aligned_cols=34  Identities=24%  Similarity=0.469  Sum_probs=18.7

Q ss_pred             CCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEe
Q 047191          301 ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR  336 (341)
Q Consensus       301 ~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~  336 (341)
                      .+++|+.|+|..+...  .+..-+..+++|+.|.+.
T Consensus       751 ~l~~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFS--SFPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             TCTTCCEEECCSSCCS--SCCCGGGGCTTCCEEECC
T ss_pred             cCCCcCEEEeCCCCCC--ccchhhhcCCCCCEEECC
Confidence            4566777776665111  122234566777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.90  E-value=2.8e-06  Score=76.11  Aligned_cols=201  Identities=9%  Similarity=0.032  Sum_probs=126.1

Q ss_pred             cccccccCcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCc-chHHHHHhcCCccceeEEeeeecCCCCcee
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDN-ILTEKLFCSCPSLEELSIQAYLNDEGPTTK  191 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~-~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~  191 (341)
                      |..++  ++|+.|++ ++..+...+  ...++++|+.|  .+.+  ++. ......+.++++|+.|.+.++.-..+.  .
T Consensus       116 ~~~~~--~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~  188 (330)
T 1xku_A          116 PEKMP--KTLQELRV-HENEITKVRKSVFNGLNQMIVV--ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--Q  188 (330)
T ss_dssp             CSSCC--TTCCEEEC-CSSCCCBBCHHHHTTCTTCCEE--ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--S
T ss_pred             Chhhc--ccccEEEC-CCCcccccCHhHhcCCccccEE--ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC--c
Confidence            44444  78999999 766654332  24568999999  9988  443 233445788999999999998654333  1


Q ss_pred             EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccc
Q 047191          192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRS  268 (341)
Q Consensus       192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~  268 (341)
                        ...++|+.|.+.++.-...   ... ..-..++|++|.+++......   .+..+++|+.+++.-.....  +     
T Consensus       189 --~~~~~L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l-----  255 (330)
T 1xku_A          189 --GLPPSLTELHLDGNKITKV---DAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--V-----  255 (330)
T ss_dssp             --SCCTTCSEEECTTSCCCEE---CTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--C-----
T ss_pred             --cccccCCEEECCCCcCCcc---CHH-HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--C-----
Confidence              1127899999988421111   000 011368999999988765432   36678889988775321111  0     


Q ss_pred             hHHhhcCCCceEEEEecchhhhcccccc---CCCCCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYH---KWFPALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~---~~~~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ...+..+++++.|.++.+.+..+.....   .....+++|+.|++..+.. .+.....-..++++++.+++.+
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred             ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence            2335678999999999887665432111   1112457888999887722 2232334577789999998865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.89  E-value=2.6e-05  Score=75.15  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=37.4

Q ss_pred             hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191          273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..+++++.|.++.+.+...   ....+..+++|+.|++..+ -.+...+...+..+++|+.|++.+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS---VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT---TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             cCCCCceEEECCCCccccc---hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            4566677777766544321   1122345678888888776 233344555677778888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.89  E-value=4.1e-07  Score=73.51  Aligned_cols=89  Identities=13%  Similarity=-0.045  Sum_probs=56.7

Q ss_pred             cccccccCcceEEEEeeeeeeccC--CCcccCCchhhhhhhccC---CCcchHHHHHhc---CCccceeEEeeeecCC--
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVP--AGGTCFPNVKILTMQLES---PDNILTEKLFCS---CPSLEELSIQAYLNDE--  186 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~---cp~Le~L~L~~c~~~~--  186 (341)
                      |........|++|+| ++|.+.+.  ....++++|+.|  +|.+   ++|.++..+...   ||.||+|+|.+|....  
T Consensus        54 P~~~~~~~~L~~LDL-s~~~Itd~GL~~L~~~~~L~~L--~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           54 PTGPLDKYKIQAIDA-TDSCIMSIGFDHMEGLQYVEKI--RLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CCCSTTCCCEEEEEE-ESCCCCGGGGGGGTTCSCCCEE--EEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             CcccCCCceEeEEeC-cCCCccHHHHHHhcCCCCCCEE--EeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            443334567888888 77665432  123467888888  8887   888888887653   7788888888886431  


Q ss_pred             -CCceeEEEeCCCcceEEEeeecCcc
Q 047191          187 -GPTTKFVISSSTLKQCTLWVETEGE  211 (341)
Q Consensus       187 -~~~~~l~i~~~sL~~L~i~~c~~~~  211 (341)
                       +.  .+. .+++|+.|.+.+|...+
T Consensus       131 Gl~--~L~-~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          131 GII--ALH-HFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHH--HGG-GCTTCCEEEEESCTTCC
T ss_pred             HHH--HHh-cCCCCCEEECCCCCCCC
Confidence             11  221 35666666666664433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.88  E-value=1.6e-05  Score=68.82  Aligned_cols=117  Identities=20%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|+.|++ .++.+...+....+++|+.|  +|.+  +++-.-   +.+++.|+.|.+.++.-.++.  .+  ..+
T Consensus        37 ~~~l~~L~~L~l-~~n~i~~l~~l~~l~~L~~L--~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~--~~--~~~  106 (263)
T 1xeu_A           37 QKELSGVQNFNG-DNSNIQSLAGMQFFTNLKEL--HLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLN--GI--PSA  106 (263)
T ss_dssp             HHHHTTCSEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCT--TC--CCS
T ss_pred             hhhcCcCcEEEC-cCCCcccchHHhhCCCCCEE--ECCCCccCCChh---hccCCCCCEEECCCCccCCcC--cc--ccC
Confidence            445789999999 87777665566778999999  9988  444322   788999999999998654433  22  227


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEE
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVI  252 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~  252 (341)
                      +|+.|.+.+|.-...     .. ....++|+.|.+++...... .+..+++|+.++
T Consensus       107 ~L~~L~L~~N~l~~~-----~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~  156 (263)
T 1xeu_A          107 CLSRLFLDNNELRDT-----DS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLD  156 (263)
T ss_dssp             SCCEEECCSSCCSBS-----GG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEE
T ss_pred             cccEEEccCCccCCC-----hh-hcCcccccEEECCCCcCCCChHHccCCCCCEEE
Confidence            888888888421111     10 11356777777765543221 233344444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.88  E-value=1.3e-05  Score=78.12  Aligned_cols=73  Identities=21%  Similarity=0.129  Sum_probs=41.5

Q ss_pred             cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVI  194 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i  194 (341)
                      |..++  ++|+.|+| .++.+...+.  .+++|++|  +|.+  ++.  +.   ...++|+.|++.++.-..+.  .   
T Consensus        56 p~~l~--~~L~~L~L-~~N~l~~lp~--~l~~L~~L--~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~l~~l~--~---  118 (622)
T 3g06_A           56 PDCLP--AHITTLVI-PDNNLTSLPA--LPPELRTL--EVSGNQLTS--LP---VLPPGLLELSIFSNPLTHLP--A---  118 (622)
T ss_dssp             CSCCC--TTCSEEEE-CSCCCSCCCC--CCTTCCEE--EECSCCCSC--CC---CCCTTCCEEEECSCCCCCCC--C---
T ss_pred             ChhhC--CCCcEEEe-cCCCCCCCCC--cCCCCCEE--EcCCCcCCc--CC---CCCCCCCEEECcCCcCCCCC--C---
Confidence            44443  67777777 6555554323  46777777  7776  332  11   15677777777776543323  2   


Q ss_pred             eCCCcceEEEee
Q 047191          195 SSSTLKQCTLWV  206 (341)
Q Consensus       195 ~~~sL~~L~i~~  206 (341)
                      ..++|+.|.+.+
T Consensus       119 ~l~~L~~L~L~~  130 (622)
T 3g06_A          119 LPSGLCKLWIFG  130 (622)
T ss_dssp             CCTTCCEEECCS
T ss_pred             CCCCcCEEECCC
Confidence            345566666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.86  E-value=2.3e-08  Score=93.90  Aligned_cols=210  Identities=17%  Similarity=0.065  Sum_probs=97.7

Q ss_pred             cCcceEEEEeeeeeeccCC-C-c-----ccCCchhhhhhhccC--CCcch---HHHHHhcCCccceeEEeeeecCCCCc-
Q 047191          123 SPSVEVLKLMSDFLLKVPA-G-G-----TCFPNVKILTMQLES--PDNIL---TEKLFCSCPSLEELSIQAYLNDEGPT-  189 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~-~-~-----~~~~~L~~L~~~L~~--~~~~~---l~~ll~~cp~Le~L~L~~c~~~~~~~-  189 (341)
                      +++|++|++ +++.+.... . .     ...++|++|  +|.+  +++.+   +...+..|+.|+.|++.++.-..... 
T Consensus       169 ~~~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~~L~~L--~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          169 KPDFKELTV-SNNDINEAGVRVLCQGLKDSPCQLEAL--KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             CTTCCEEEC-CSSBCHHHHHHHHHHHHHHSCCCCCEE--ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             CCCCCEEEC-cCCCcchHHHHHHHHHHhcCCCCceEE--EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            566666666 544432210 0 0     013466666  6666  44443   34445567777777776663210000 


Q ss_pred             ---eeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---e-----ecCCCCeeEEEEEEEeC
Q 047191          190 ---TKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---V-----VHDLNSLTDVILDIVYG  258 (341)
Q Consensus       190 ---~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~-----~~~~~~L~~~~l~~~~~  258 (341)
                         +.+.-..++|+.|.+.+|.-............-..|+|++|.+++......   .     ....++|+.+++.....
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               000002456777777664111100000001111256777777765543211   0     11224666655532211


Q ss_pred             ccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCCC-CCCcccEEEEEEcCCCh---hHHHHHHhcCCCCCc
Q 047191          259 EWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFP-ALSYLQHLEVAVGAIGW---AVLPVILSSSVHLQS  332 (341)
Q Consensus       259 ~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~-~f~~L~~L~l~~~~~~~---~~l~~ll~~cp~L~~  332 (341)
                      ......   . ...+..+++++.|.++.+.+....... ...++ ..++|++|++..+..+.   ..+...+..+|+|+.
T Consensus       326 ~~~~~~---~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          326 TAACCS---HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             BGGGHH---HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             chHHHH---HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence            110000   1 345566788888888776543211000 01111 14577777777763332   345556677788888


Q ss_pred             EEEeee
Q 047191          333 LVLRKV  338 (341)
Q Consensus       333 L~l~~~  338 (341)
                      |++.+-
T Consensus       403 L~l~~N  408 (461)
T 1z7x_W          403 LDLSNN  408 (461)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            777653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.86  E-value=6.1e-07  Score=79.52  Aligned_cols=178  Identities=15%  Similarity=0.050  Sum_probs=90.7

Q ss_pred             ccccCcceEEEEeeeeeec-cCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191          120 LYASPSVEVLKLMSDFLLK-VPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS  196 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~-~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~  196 (341)
                      ++.+++|+.|+| ++..+. .+.....+++|++|  ++.+  ++.......+.++++|+.|++.++.-..... ..--..
T Consensus        74 ~~~~~~L~~L~L-s~n~i~~l~~~~~~l~~L~~L--~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l  149 (306)
T 2z66_A           74 DFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHL--DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGL  149 (306)
T ss_dssp             HHSCSCCCEEEC-CSCSEEEEEEEEETCTTCCEE--ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTC
T ss_pred             cccccccCEEEC-CCCccccChhhcCCCCCCCEE--ECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccC
Confidence            344566777777 544332 22224456777777  7766  3222211235567777777776653211000 000123


Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ  273 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~  273 (341)
                      ++|+.|.+.++.-..   ..........++|++|.+++......   .+..+++|+.+++.-.....  ..    ...+.
T Consensus       150 ~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~~~  220 (306)
T 2z66_A          150 SSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS--LD----TFPYK  220 (306)
T ss_dssp             TTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB--CC----SGGGT
T ss_pred             cCCCEEECCCCcccc---ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc--cC----hhhcc
Confidence            567777776631100   00011112356777777776554332   24566777766653211110  00    23456


Q ss_pred             cCCCceEEEEecchhhhccccccCCCCCC-CcccEEEEEEc
Q 047191          274 QLNNTTSLTVSYGVLCALDHAYHKWFPAL-SYLQHLEVAVG  313 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f-~~L~~L~l~~~  313 (341)
                      .+++++.|.++.+.+....   ...+..+ ++|++|++..+
T Consensus       221 ~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          221 CLNSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             TCTTCCEEECTTSCCCBCS---SSSCCCCCTTCCEEECTTC
T ss_pred             CcccCCEeECCCCCCcccC---HHHHHhhhccCCEEEccCC
Confidence            7888999999877654321   1123344 38899998876

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.81  E-value=6.9e-06  Score=83.17  Aligned_cols=61  Identities=18%  Similarity=0.180  Sum_probs=32.4

Q ss_pred             hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEeeee
Q 047191          272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                      +.++++++.|.++.+.+..+.   ...+..+++|+.|+|+.+.. +...  ..+.  ++|+.|++++=.
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          476 FEGLSHLQVLYLNHNYLNSLP---PGVFSHLTALRGLSLNSNRLTVLSH--NDLP--ANLEILDISRNQ  537 (844)
T ss_dssp             SSCBCCEECCCCCHHHHTTCC---TTSSSSCCSCSEEEEESCCCSSCCC--CCCC--SCCCEEEEEEEC
T ss_pred             hcCcccccEEECCCCcccccC---hhHccchhhhheeECCCCCCCccCh--hhhh--ccccEEECCCCc
Confidence            445566666666665543221   11233567788888887611 1110  0011  788888877643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.81  E-value=3e-06  Score=75.49  Aligned_cols=202  Identities=15%  Similarity=0.028  Sum_probs=115.9

Q ss_pred             cccccccCcceEEEEeee-eee-cc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCcee
Q 047191          117 QIELYASPSVEVLKLMSD-FLL-KV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTK  191 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~-~~l-~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~  191 (341)
                      |..+...+.|++|+| ++ ..+ .. +.....+++|++|  +|.+  ++. .+...+..+++|+.|++.++.-.+..+ .
T Consensus        69 ~~~l~~l~~L~~L~L-~~~n~l~~~~p~~l~~l~~L~~L--~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~  143 (313)
T 1ogq_A           69 PSSLANLPYLNFLYI-GGINNLVGPIPPAIAKLTQLHYL--YITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLP-P  143 (313)
T ss_dssp             CGGGGGCTTCSEEEE-EEETTEESCCCGGGGGCTTCSEE--EEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCC-G
T ss_pred             ChhHhCCCCCCeeeC-CCCCcccccCChhHhcCCCCCEE--ECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCC-h
Confidence            566677888999999 52 333 22 3245568888888  8877  432 222236778899999888874321110 1


Q ss_pred             EEEeCCCcceEEEeeecCccccccCceeEEEec-CCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCcc
Q 047191          192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITA-PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNR  267 (341)
Q Consensus       192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~-p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~  267 (341)
                      .--..++|+.|.+..+.-.+.   ....+. .. ++|++|.+.+......   .+..+. |+.+++.-......      
T Consensus       144 ~~~~l~~L~~L~L~~N~l~~~---~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~------  212 (313)
T 1ogq_A          144 SISSLPNLVGITFDGNRISGA---IPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD------  212 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEE---CCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC------
T ss_pred             HHhcCCCCCeEECcCCcccCc---CCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc------
Confidence            112346788888887421100   001111 13 3788888876543211   233333 66655532111100      


Q ss_pred             chHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191          268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       268 ~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                      ....+..+++++.|.++.+.+... .+   .+..+++|++|++..+.... .+...+..+|+|+.|++.+-.
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~-~~---~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFD-LG---KVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCB-GG---GCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSE
T ss_pred             CCHHHhcCCCCCEEECCCCceeee-cC---cccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCc
Confidence            044566889999999988765422 11   13357799999998872211 122346788999999987643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.81  E-value=2.3e-06  Score=76.76  Aligned_cols=205  Identities=12%  Similarity=0.067  Sum_probs=99.1

Q ss_pred             cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC--CCceeE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE--GPTTKF  192 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~--~~~~~l  192 (341)
                      |..+..+++|++|+| ++..+...+... +++|++|  .+.+  ++.- -...+.++++|+.|.+.++.-..  ..+..+
T Consensus        95 ~~~~~~l~~L~~L~L-~~n~l~~l~~~~-~~~L~~L--~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  169 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYI-SKNHLVEIPPNL-PSSLVEL--RIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAF  169 (332)
T ss_dssp             GGGSTTCTTCCEEEC-CSSCCCSCCSSC-CTTCCEE--ECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred             HhHhhCcCCCCEEEC-CCCcCCccCccc-cccCCEE--ECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence            344555677777777 555444332222 2677777  7666  3221 11225667777777776653210  000000


Q ss_pred             --------EE-----------eCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeE
Q 047191          193 --------VI-----------SSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTD  250 (341)
Q Consensus       193 --------~i-----------~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~  250 (341)
                              .+           -.++|+.|.+.++.-...    ........++|++|.+.+......   .+..+++|+.
T Consensus       170 ~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  245 (332)
T 2ft3_A          170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE  245 (332)
T ss_dssp             CSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred             cCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence                    00           013455555544210000    000011245666666665443322   2455666666


Q ss_pred             EEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCC---CCCCcccEEEEEEcC-CChhHHHHHHhc
Q 047191          251 VILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWF---PALSYLQHLEVAVGA-IGWAVLPVILSS  326 (341)
Q Consensus       251 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~---~~f~~L~~L~l~~~~-~~~~~l~~ll~~  326 (341)
                      +++.-.....  +     ...+..+++++.|.++.+.+..+........   ..+++|+.|.+..+. ..+......+..
T Consensus       246 L~L~~N~l~~--l-----p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          246 LHLDNNKLSR--V-----PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             EECCSSCCCB--C-----CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             EECCCCcCee--c-----ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence            6553211110  0     2225677888888888776554321111111   125678888888762 222223345677


Q ss_pred             CCCCCcEEEee
Q 047191          327 SVHLQSLVLRK  337 (341)
Q Consensus       327 cp~L~~L~l~~  337 (341)
                      +++|+.|.+.+
T Consensus       319 l~~L~~l~l~~  329 (332)
T 2ft3_A          319 VTDRLAIQFGN  329 (332)
T ss_dssp             BCCSTTEEC--
T ss_pred             cchhhhhhccc
Confidence            89999998865

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.81  E-value=5.7e-06  Score=77.16  Aligned_cols=41  Identities=17%  Similarity=0.376  Sum_probs=37.0

Q ss_pred             CCCccCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc
Q 047191            3 PAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS   43 (341)
Q Consensus         3 ~~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~   43 (341)
                      ..|.|+.||+|++.+||+||+.+++++++.|||+|+++...
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            36889999999999999999999999999999999876443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.77  E-value=4.7e-06  Score=81.69  Aligned_cols=201  Identities=9%  Similarity=0.059  Sum_probs=103.5

Q ss_pred             cccccc--ccCcceEEEEeeeeee-c-cCCCcccCCchhhhhhhccC---CCcchHHHHH------hcCCccceeEEeee
Q 047191          116 CQIELY--ASPSVEVLKLMSDFLL-K-VPAGGTCFPNVKILTMQLES---PDNILTEKLF------CSCPSLEELSIQAY  182 (341)
Q Consensus       116 ~p~~~~--~~~~L~~L~L~~~~~l-~-~~~~~~~~~~L~~L~~~L~~---~~~~~l~~ll------~~cp~Le~L~L~~c  182 (341)
                      .|..+.  .+++|++|+| +++.+ . .|....++++|+.|  +|.+   ++...+-.-+      ..+++|+.|.+.++
T Consensus       239 ip~~l~~~~l~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L--~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEV-YNCPNLTKLPTFLKALPEMQLI--NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEE-ECCTTCSSCCTTTTTCSSCCEE--ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             CchhhhhcccCCCCEEEe-cCCcCCccChHHHhcCCCCCEE--ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence            356666  7899999999 76543 2 33345678999999  8887   3321233222      34689999999888


Q ss_pred             ecCCCCcee--EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCCC-eeEEEEEEEe
Q 047191          183 LNDEGPTTK--FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNS-LTDVILDIVY  257 (341)
Q Consensus       183 ~~~~~~~~~--l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~~-L~~~~l~~~~  257 (341)
                      .-..++  .  .--..++|+.|.+..|.-.+    ... .....++|++|.+++.....+  .+..+++ |+.+++.-..
T Consensus       316 ~l~~ip--~~~~l~~l~~L~~L~L~~N~l~g----~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          316 NLKTFP--VETSLQKMKKLGMLECLYNQLEG----KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             CCSSCC--CHHHHTTCTTCCEEECCSCCCEE----ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred             cCCccC--chhhhccCCCCCEEeCcCCcCcc----chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence            654333  2  11234678888887742110    011 112356777777766543211  1344555 6665553211


Q ss_pred             CccccCCCccchHHhh--cCCCceEEEEecchhhhccccccCCCC-------CCCcccEEEEEEcCCChhHHHHHHhcCC
Q 047191          258 GEWSRVDPNRSIQLLQ--QLNNTTSLTVSYGVLCALDHAYHKWFP-------ALSYLQHLEVAVGAIGWAVLPVILSSSV  328 (341)
Q Consensus       258 ~~~~~~~~~~~~~~l~--~~~~l~~L~l~~~~~~~~~~~~~~~~~-------~f~~L~~L~l~~~~~~~~~l~~ll~~cp  328 (341)
                      ...  +     ...+.  .+++++.|.++.+.+....   ...++       ..++|++|++..+... ..-..+.+.+|
T Consensus       389 l~~--l-----p~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~  457 (636)
T 4eco_A          389 LKY--I-----PNIFDAKSVSVMSAIDFSYNEIGSVD---GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGS  457 (636)
T ss_dssp             CSS--C-----CSCCCTTCSSCEEEEECCSSCTTTTT---TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTC
T ss_pred             Ccc--c-----chhhhhcccCccCEEECcCCcCCCcc---hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCC
Confidence            110  0     01111  2336667777665443210   00111       3345666666655111 11123445566


Q ss_pred             CCCcEEEee
Q 047191          329 HLQSLVLRK  337 (341)
Q Consensus       329 ~L~~L~l~~  337 (341)
                      +|+.|++.+
T Consensus       458 ~L~~L~Ls~  466 (636)
T 4eco_A          458 PLSSINLMG  466 (636)
T ss_dssp             CCSEEECCS
T ss_pred             CCCEEECCC
Confidence            666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.77  E-value=2.6e-06  Score=86.11  Aligned_cols=63  Identities=13%  Similarity=0.065  Sum_probs=39.8

Q ss_pred             cc--cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCc-cceeEEeeeec
Q 047191          117 QI--ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPS-LEELSIQAYLN  184 (341)
Q Consensus       117 p~--~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~-Le~L~L~~c~~  184 (341)
                      |.  .+..+++|+.|+| ++..+...|....+++|+.|  .|.+  ++  .+..-+.+++. |+.|.|.++.-
T Consensus       564 p~~~~l~~L~~L~~L~L-s~N~l~~lp~~~~L~~L~~L--~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDC-VHNKVRHLEAFGTNVKLTDL--KLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CCHHHHTTCTTCCEEEC-TTSCCCBCCCCCTTSEESEE--ECCSSCCS--CCCTTSCEECTTCCEEECCSSCC
T ss_pred             CChhhhhcCCCCCEEEC-CCCCcccchhhcCCCcceEE--ECcCCccc--cchHHHhhccccCCEEECcCCCC
Confidence            55  5666777888887 65444443355567777777  7777  43  33333666777 88887777643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.76  E-value=5.6e-06  Score=72.06  Aligned_cols=155  Identities=16%  Similarity=0.088  Sum_probs=101.0

Q ss_pred             cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS  196 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~  196 (341)
                      .+..+++|++|+| +++.+...+....+++|++|  .|.+  ++. .....+.+++.|+.|.+.++.-.+... ..--..
T Consensus        58 ~l~~l~~L~~L~l-~~n~l~~~~~l~~l~~L~~L--~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l  132 (272)
T 3rfs_A           58 GIQYLPNVRYLAL-GGNKLHDISALKELTNLTYL--ILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKL  132 (272)
T ss_dssp             TGGGCTTCCEEEC-TTSCCCCCGGGTTCTTCCEE--ECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTC
T ss_pred             ccccCCCCcEEEC-CCCCCCCchhhcCCCCCCEE--ECCCCccCc-cChhHhcCCcCCCEEECCCCcCCccCH-HHhccC
Confidence            4556899999999 77666655456678999999  9988  442 222336789999999999985432220 001134


Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCcee---ecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ  273 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~  273 (341)
                      ++|+.|.+.+|.-...    .....-..++|++|.+.+.......   +..+++|+.+++.-.....  ..    ...+.
T Consensus       133 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~~~  202 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSL----PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS--VP----DGVFD  202 (272)
T ss_dssp             TTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CC----TTTTT
T ss_pred             CCCCEEECCCCccCcc----CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc--cC----HHHHh
Confidence            7899999988521111    0001124689999999987654332   5678899988774321111  00    44567


Q ss_pred             cCCCceEEEEecchh
Q 047191          274 QLNNTTSLTVSYGVL  288 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~  288 (341)
                      .+++++.|.++.+.+
T Consensus       203 ~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          203 RLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TCTTCCEEECCSSCB
T ss_pred             CCcCCCEEEccCCCc
Confidence            889999999988754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.72  E-value=2.1e-06  Score=78.05  Aligned_cols=182  Identities=13%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             CcceEEEEeeeeeeccCCC------cccC-CchhhhhhhccC--CCcchH---HHHHhc-CCccceeEEeeeecCCCCce
Q 047191          124 PSVEVLKLMSDFLLKVPAG------GTCF-PNVKILTMQLES--PDNILT---EKLFCS-CPSLEELSIQAYLNDEGPTT  190 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~~------~~~~-~~L~~L~~~L~~--~~~~~l---~~ll~~-cp~Le~L~L~~c~~~~~~~~  190 (341)
                      ++|++|+| +++.+.....      ...+ ++|++|  +|.+  +++...   ...+.. ++.|+.|++.++.-....  
T Consensus        80 ~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~~L~~L--~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--  154 (362)
T 3goz_A           80 ANVTSLNL-SGNFLSYKSSDELVKTLAAIPFTITVL--DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--  154 (362)
T ss_dssp             TTCCEEEC-CSSCGGGSCHHHHHHHHHTSCTTCCEE--ECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--
T ss_pred             CCccEEEC-cCCcCChHHHHHHHHHHHhCCCCccEE--ECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--
Confidence            77888888 6666643311      1223 678888  8877  444443   333444 568888888877432111  


Q ss_pred             eEEE-----eC-CCcceEEEeeecCccccccCceeEEEec-CCceEEEeeccccCce-------eecC-CCCeeEEEEEE
Q 047191          191 KFVI-----SS-STLKQCTLWVETEGEMFTQAEYKVRITA-PSLERLHIMSDIFGKF-------VVHD-LNSLTDVILDI  255 (341)
Q Consensus       191 ~l~i-----~~-~sL~~L~i~~c~~~~~~~~~~~~~~~~~-p~L~~l~~~~~~~~~~-------~~~~-~~~L~~~~l~~  255 (341)
                      .-.+     .. ++|+.|.+.+|.-............... ++|++|++++......       .+.. .++|+++++..
T Consensus       155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~  234 (362)
T 3goz_A          155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL  234 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence            0011     12 3788888877421110000000011123 4788888876654331       1222 34677766643


Q ss_pred             EeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccc----cccCCCCCCCcccEEEEEEc
Q 047191          256 VYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDH----AYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       256 ~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~----~~~~~~~~f~~L~~L~l~~~  313 (341)
                      ........   .. ..++..+++++.|.++.+.+..+..    .-...++.+++|+.|++..+
T Consensus       235 N~l~~~~~---~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          235 NCLHGPSL---ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             SCCCCCCH---HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             CCCCcHHH---HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            21111000   01 3445677788888887765332211    11223456667777777665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.72  E-value=6.1e-06  Score=71.86  Aligned_cols=82  Identities=20%  Similarity=0.219  Sum_probs=39.5

Q ss_pred             cccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEE
Q 047191          119 ELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVI  194 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i  194 (341)
                      .+..+++|++|+| +++.+.. ++ ...++++|++|  +|.+  ++.... ..+.++++|+.|.+.++.-....  ...+
T Consensus        47 ~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~  120 (276)
T 2z62_A           47 SFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTL--ILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLE--NFPI  120 (276)
T ss_dssp             TTTTCTTCSEEEC-TTCCCCEECTTTTTTCTTCCEE--ECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCST--TCCC
T ss_pred             HhccccCCcEEEC-CCCcCCccCHHHccCCcCCCEE--ECCCCccCccCh-hhhcCCccccEEECCCCCccccC--chhc
Confidence            3444566666666 5444322 21 23445666666  6655  322211 22455666666666665432222  1111


Q ss_pred             -eCCCcceEEEee
Q 047191          195 -SSSTLKQCTLWV  206 (341)
Q Consensus       195 -~~~sL~~L~i~~  206 (341)
                       ..++|+.|.+.+
T Consensus       121 ~~l~~L~~L~l~~  133 (276)
T 2z62_A          121 GHLKTLKELNVAH  133 (276)
T ss_dssp             TTCTTCCEEECCS
T ss_pred             ccCCCCCEEECcC
Confidence             234566666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.71  E-value=1e-06  Score=79.05  Aligned_cols=56  Identities=21%  Similarity=0.209  Sum_probs=26.4

Q ss_pred             CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      +.|+.|+| .+..+.. ++ ...++++|++|  .|.+  ++.-. ...+.++++|+.|++.++.
T Consensus        54 ~~l~~L~l-~~n~i~~~~~~~~~~l~~L~~L--~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           54 PDTTLLDL-QNNDISELRKDDFKGLQHLYAL--VLVNNKISKIH-EKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             TTCCEEEC-CSSCCCEECTTTTTTCTTCCEE--ECCSSCCCEEC-GGGSTTCTTCCEEECCSSC
T ss_pred             CCCeEEEC-CCCcCCccCHhHhhCCCCCcEE--ECCCCccCccC-HhHhhCcCCCCEEECCCCc
Confidence            45666666 4433321 11 23445666666  6555  32211 1124556666666665553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.70  E-value=1.2e-05  Score=68.36  Aligned_cols=188  Identities=16%  Similarity=0.112  Sum_probs=98.1

Q ss_pred             cceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC-CCcchH-HHHHhcCCccceeEEeeeecCC-CCceeEEEeCCCc
Q 047191          125 SVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES-PDNILT-EKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSSTL  199 (341)
Q Consensus       125 ~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~-~~~~~l-~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~sL  199 (341)
                      +|+.|++ ++..+.. ++ ...++++|++|  +|.+ -.-..+ ...+.++++|+.|.+.+|.... +. +...-..++|
T Consensus        32 ~l~~L~l-~~n~l~~i~~~~~~~l~~L~~L--~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L  107 (239)
T 2xwt_C           32 STQTLKL-IETHLRTIPSHAFSNLPNISRI--YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL  107 (239)
T ss_dssp             TCCEEEE-ESCCCSEECTTTTTTCTTCCEE--EEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred             cccEEEE-eCCcceEECHHHccCCCCCcEE--eCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence            6788888 6555533 22 24467788888  7766 101111 1235678888888888753321 00 0112245678


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCce---EEEeecc-ccCce---eecCCCCee-EEEEEEEeCccccCCCccchHH
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLE---RLHIMSD-IFGKF---VVHDLNSLT-DVILDIVYGEWSRVDPNRSIQL  271 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~---~l~~~~~-~~~~~---~~~~~~~L~-~~~l~~~~~~~~~~~~~~~~~~  271 (341)
                      +.|.+.++.-...     .. ....++|+   +|.+.+. ....+   .+..+++|+ .+++.-....  .+.    ...
T Consensus       108 ~~L~l~~n~l~~l-----p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~----~~~  175 (239)
T 2xwt_C          108 KFLGIFNTGLKMF-----PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQ----GYA  175 (239)
T ss_dssp             CEEEEEEECCCSC-----CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EEC----TTT
T ss_pred             CEEeCCCCCCccc-----cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccC----Hhh
Confidence            8888887422111     11 11345555   7777765 33322   245666777 6555321110  000    222


Q ss_pred             hhcCCCceEEEEecch-hhhccccccCCCCCC-CcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191          272 LQQLNNTTSLTVSYGV-LCALDHAYHKWFPAL-SYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       272 l~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~f-~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      +.. ++++.|.++.+. +..+.   ...+..+ ++|++|++..+. .....     ..+++|+.|.+.+
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~---~~~~~~l~~~L~~L~l~~N~l~~l~~-----~~~~~L~~L~l~~  235 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVID---KDAFGGVYSGPSLLDVSQTSVTALPS-----KGLEHLKELIARN  235 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEEC---TTTTTTCSBCCSEEECTTCCCCCCCC-----TTCTTCSEEECTT
T ss_pred             cCC-CCCCEEEcCCCCCcccCC---HHHhhccccCCcEEECCCCccccCCh-----hHhccCceeeccC
Confidence            333 678888887763 44221   1123345 678888887761 11111     1567888887755

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.69  E-value=2.9e-05  Score=74.78  Aligned_cols=39  Identities=13%  Similarity=0.095  Sum_probs=20.9

Q ss_pred             CCCcccEEEEEEcCCCh---hHHHHHHhcCCCCCcEEEeeeee
Q 047191          301 ALSYLQHLEVAVGAIGW---AVLPVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       301 ~f~~L~~L~l~~~~~~~---~~l~~ll~~cp~L~~L~l~~~~~  340 (341)
                      ..++|+.|.+.......   ..+...+. .++|+.|++.+-.+
T Consensus       247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l  288 (562)
T 3a79_B          247 RGPTLLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTI  288 (562)
T ss_dssp             SCSSCEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEE
T ss_pred             ccCcceEEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEe
Confidence            34566677766652222   22233222 35788888777554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.69  E-value=2.9e-06  Score=83.12  Aligned_cols=62  Identities=10%  Similarity=0.002  Sum_probs=35.3

Q ss_pred             cccccccCcceEEEEeeeee-ec---cCCCccc------CCchhhhhhhccC--CCcchHHH--HHhcCCccceeEEeee
Q 047191          117 QIELYASPSVEVLKLMSDFL-LK---VPAGGTC------FPNVKILTMQLES--PDNILTEK--LFCSCPSLEELSIQAY  182 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~-l~---~~~~~~~------~~~L~~L~~~L~~--~~~~~l~~--ll~~cp~Le~L~L~~c  182 (341)
                      |..+...++|+.|+| +++. +.   .|.....      +++|+.|  +|.+  ++  .+..  .+.++++|+.|.+.++
T Consensus       266 p~~l~~l~~L~~L~L-s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L--~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          266 PTFLKALPEMQLINV-ACNRGISGEQLKDDWQALADAPVGEKIQII--YIGYNNLK--TFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             CTTTTTCSSCCEEEC-TTCTTSCHHHHHHHHHHHHHSGGGGTCCEE--ECCSSCCS--SCCCHHHHTTCTTCCEEECCSC
T ss_pred             hHHHhcCCCCCEEEC-cCCCCCccccchHHHHhhhccccCCCCCEE--ECCCCcCC--ccCchhhhccCCCCCEEeCcCC
Confidence            666666777777777 5443 32   1211222      3677777  7766  44  3322  4666777777777665


Q ss_pred             e
Q 047191          183 L  183 (341)
Q Consensus       183 ~  183 (341)
                      .
T Consensus       341 ~  341 (636)
T 4eco_A          341 Q  341 (636)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.67  E-value=2.6e-06  Score=83.94  Aligned_cols=38  Identities=21%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             CCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeee
Q 047191          300 PALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       300 ~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      ..+++|+.|++..+... ......+..+++|+.|++.+-
T Consensus       477 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          477 QPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCC
Confidence            35667778877765111 011123567788888887653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.65  E-value=4.7e-06  Score=82.11  Aligned_cols=56  Identities=13%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             CcceEEEEeeeeeec-cCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191          124 PSVEVLKLMSDFLLK-VPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY  182 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~-~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c  182 (341)
                      ++|+.|++ +++.+. ..+ ...++++|+.|  +|.+  ++...-...+.+++.|+.|.+.++
T Consensus       381 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          381 SPLHILNL-TKNKISKIESDAFSWLGHLEVL--DLGLNEIGQELTGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             SCCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred             CcCceEEC-CCCCCCeEChhhhhCCCCCCEE--eCCCCcCccccCcccccCcccccEEecCCC
Confidence            56777777 544442 221 23456677777  6666  332222233456677777776665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.62  E-value=3.6e-05  Score=75.01  Aligned_cols=56  Identities=23%  Similarity=0.110  Sum_probs=32.8

Q ss_pred             cCCCceEEEEecchhhhccccccCCCC-CCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191          274 QLNNTTSLTVSYGVLCALDHAYHKWFP-ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~-~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                      .+++++.|.++.+.+..        +| .+++|+.|++..+...  .+..-+..+|+|+.|.+.+-.
T Consensus       239 ~l~~L~~L~Ls~N~L~~--------lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          239 LPSELKELMVSGNRLTS--------LPMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCTTCCEEECCSSCCSC--------CCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCcCcEEECCCCCCCc--------CCcccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCC
Confidence            34555555555443321        12 4567888888776222  223347788999999887643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.62  E-value=2.7e-05  Score=67.62  Aligned_cols=155  Identities=17%  Similarity=0.125  Sum_probs=98.4

Q ss_pred             cccccCcceEEEEeeeeeeccCC-C-cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEE
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPA-G-GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVI  194 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~-~-~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i  194 (341)
                      .+..+++|++|+| ++..+...+ . ...+++|++|  .|.+  ++.-. ...+.++++|+.|.+.++.-..... ..--
T Consensus        56 ~~~~l~~L~~L~l-~~n~l~~i~~~~~~~l~~L~~L--~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~  130 (270)
T 2o6q_A           56 AFHRLTKLRLLYL-NDNKLQTLPAGIFKELKNLETL--WVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPP-RVFD  130 (270)
T ss_dssp             SSSSCTTCCEEEC-CSSCCSCCCTTTTSSCTTCCEE--ECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCT-TTTT
T ss_pred             HhcCCCCCCEEEC-CCCccCeeChhhhcCCCCCCEE--ECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCH-HHhC
Confidence            4566899999999 766664432 2 3568999999  9987  43321 2346789999999999875432220 0011


Q ss_pred             eCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHH
Q 047191          195 SSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQL  271 (341)
Q Consensus       195 ~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~  271 (341)
                      ..++|+.|.+..+.-...    .....-..++|++|.+.+.....+   .+..+++|+.+++.-.....  +.    ...
T Consensus       131 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~  200 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSL----PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--VP----EGA  200 (270)
T ss_dssp             TCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC--CC----TTT
T ss_pred             cCcCCCEEECCCCcCCcc----CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc--CC----HHH
Confidence            347899999988421111    000011368999999988755433   25677889888774321111  11    445


Q ss_pred             hhcCCCceEEEEecchh
Q 047191          272 LQQLNNTTSLTVSYGVL  288 (341)
Q Consensus       272 l~~~~~l~~L~l~~~~~  288 (341)
                      +..+++++.|.++.+.+
T Consensus       201 ~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTCTTCCEEECCSSCB
T ss_pred             hccccCCCEEEecCCCe
Confidence            67889999999988764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.60  E-value=4.5e-06  Score=74.25  Aligned_cols=196  Identities=15%  Similarity=0.039  Sum_probs=117.2

Q ss_pred             ccCcceEEEEeeeeeec-cCCC-c--ccCCchhhhhhhccC--CCc--chHHHHHh-cCCccceeEEeeeecCCCCceeE
Q 047191          122 ASPSVEVLKLMSDFLLK-VPAG-G--TCFPNVKILTMQLES--PDN--ILTEKLFC-SCPSLEELSIQAYLNDEGPTTKF  192 (341)
Q Consensus       122 ~~~~L~~L~L~~~~~l~-~~~~-~--~~~~~L~~L~~~L~~--~~~--~~l~~ll~-~cp~Le~L~L~~c~~~~~~~~~l  192 (341)
                      ..++|++|+| +++.+. ..|. .  ..+++|+.|  +|.+  ++.  ..+..+-. ..++|+.|.+.++.-.+.....+
T Consensus        93 ~l~~L~~L~L-~~n~l~~~~~~~~~~~~l~~L~~L--~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTL-ENLEVTGTAPPPLLEATGPDLNIL--NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEE-EEEBCBSCCCCCSSSCCSCCCSEE--EEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             CcCCccEEEc-cCCcccchhHHHHHHhcCCCccEE--EccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            4678999999 777664 2322 2  578999999  9988  433  33444322 24999999999985432220011


Q ss_pred             EEeCCCcceEEEeeecCccccccCceeE-EEecCCceEEEeeccccCce------eecCCCCeeEEEEEEEeCccccCCC
Q 047191          193 VISSSTLKQCTLWVETEGEMFTQAEYKV-RITAPSLERLHIMSDIFGKF------VVHDLNSLTDVILDIVYGEWSRVDP  265 (341)
Q Consensus       193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~-~~~~p~L~~l~~~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~~  265 (341)
                       -..++|+.|.+.++.-.+.. .....+ ....++|++|.+.+......      .+..+++|+.+++.-.......   
T Consensus       170 -~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---  244 (312)
T 1wwl_A          170 -RVFPALSTLDLSDNPELGER-GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---  244 (312)
T ss_dssp             -CCCSSCCEEECCSCTTCHHH-HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---
T ss_pred             -ccCCCCCEEECCCCCcCcch-HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---
Confidence             14578999999884211100 000011 12468999999987765421      1346688888776422111100   


Q ss_pred             ccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191          266 NRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       266 ~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                        .......+++++.|.++.+.+..+  +  ..+  +++|++|++..+. .+..   . +..+|+|+.|++.+
T Consensus       245 --~~~~~~~l~~L~~L~Ls~N~l~~i--p--~~~--~~~L~~L~Ls~N~l~~~p---~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          245 --GAPSCDWPSQLNSLNLSFTGLKQV--P--KGL--PAKLSVLDLSYNRLDRNP---S-PDELPQVGNLSLKG  305 (312)
T ss_dssp             --CCSCCCCCTTCCEEECTTSCCSSC--C--SSC--CSEEEEEECCSSCCCSCC---C-TTTSCEEEEEECTT
T ss_pred             --chhhhhhcCCCCEEECCCCccChh--h--hhc--cCCceEEECCCCCCCCCh---h-HhhCCCCCEEeccC
Confidence              012334568999999988766522  1  112  2789999998872 2222   2 67789999988865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.59  E-value=5.2e-05  Score=66.66  Aligned_cols=146  Identities=16%  Similarity=0.091  Sum_probs=92.3

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|+.|+| +++.+...+....+++|+.|  .|.+  +++  +.. +..++.|+.|++.++.-....  .+ ...+
T Consensus        64 ~~~l~~L~~L~L-~~n~l~~~~~l~~l~~L~~L--~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~--~l-~~l~  134 (291)
T 1h6t_A           64 IQYLPNVTKLFL-NGNKLTDIKPLANLKNLGWL--FLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDIN--GL-VHLP  134 (291)
T ss_dssp             GGGCTTCCEEEC-CSSCCCCCGGGTTCTTCCEE--ECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCG--GG-GGCT
T ss_pred             HhcCCCCCEEEc-cCCccCCCcccccCCCCCEE--ECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCCh--hh-cCCC
Confidence            455789999999 77666554346678999999  9988  444  222 788999999999988544322  11 1347


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +|+.|.+.+|.-...      ...-..++|+.|.+++...... .+..+++|+.+++.-.....        ..-+..++
T Consensus       135 ~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~--------l~~l~~l~  200 (291)
T 1h6t_A          135 QLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--------LRALAGLK  200 (291)
T ss_dssp             TCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--------CGGGTTCT
T ss_pred             CCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC--------ChhhccCC
Confidence            899999988421111      1112468999999987654322 25666777766653221111        12256677


Q ss_pred             CceEEEEecchh
Q 047191          277 NTTSLTVSYGVL  288 (341)
Q Consensus       277 ~l~~L~l~~~~~  288 (341)
                      +++.|.++.+.+
T Consensus       201 ~L~~L~l~~n~i  212 (291)
T 1h6t_A          201 NLDVLELFSQEC  212 (291)
T ss_dssp             TCSEEEEEEEEE
T ss_pred             CCCEEECcCCcc
Confidence            777777776543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.55  E-value=4.3e-05  Score=70.89  Aligned_cols=38  Identities=24%  Similarity=0.495  Sum_probs=35.4

Q ss_pred             CCCccCCCChHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191            3 PAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLV   40 (341)
Q Consensus         3 ~~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l   40 (341)
                      ..|.++.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            46889999999999999999999999999999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.54  E-value=1.2e-06  Score=82.00  Aligned_cols=67  Identities=21%  Similarity=0.174  Sum_probs=39.6

Q ss_pred             cCCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEcCCChhHHHHHHh----cCCCCCcEEEeeeee
Q 047191          274 QLNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVGAIGWAVLPVILS----SSVHLQSLVLRKVII  340 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~----~cp~L~~L~l~~~~~  340 (341)
                      ..++++.|.++.+.+....... ...+..+++|++|++..+..+......+.+    ..++|+.|.+.+..|
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence            4567999999876543221100 111224578999999887443333333332    457999999876543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.50  E-value=1.3e-05  Score=71.07  Aligned_cols=198  Identities=13%  Similarity=-0.038  Sum_probs=115.2

Q ss_pred             cCcceEEEEeeeeeec-cCCC-c--ccCCchhhhhhhccC--CCcc--hHH-HHHhcCCccceeEEeeeecCCCCceeEE
Q 047191          123 SPSVEVLKLMSDFLLK-VPAG-G--TCFPNVKILTMQLES--PDNI--LTE-KLFCSCPSLEELSIQAYLNDEGPTTKFV  193 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~-~~~~-~--~~~~~L~~L~~~L~~--~~~~--~l~-~ll~~cp~Le~L~L~~c~~~~~~~~~l~  193 (341)
                      .++|++|++ .++.+. ..+. .  ..+++|++|  .|.+  ++..  .+. .-+..++.|+.|++.++.-..... ..-
T Consensus        90 ~~~L~~L~l-~~n~l~~~~~~~~~~~~~~~L~~L--~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~  165 (310)
T 4glp_A           90 YSRLKELTL-EDLKITGTMPPLPLEATGLALSSL--RLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQV  165 (310)
T ss_dssp             HSCCCEEEE-ESCCCBSCCCCCSSSCCCBCCSSC--EEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TSC
T ss_pred             cCceeEEEe-eCCEeccchhhhhhhccCCCCCEE--EeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HHh
Confidence            345889999 766653 2322 2  668999999  9988  4432  121 224589999999999986532220 111


Q ss_pred             EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce------eecCCCCeeEEEEEEEeCccccCCCcc
Q 047191          194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF------VVHDLNSLTDVILDIVYGEWSRVDPNR  267 (341)
Q Consensus       194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~~~~  267 (341)
                      -..++|+.|++.++.-.+.............|+|++|.+++......      .+..+++|+++++.......  ..+. 
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~p~-  242 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA--TVNP-  242 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC--CCCS-
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc--cchh-
Confidence            14578999999884211100000001112468899999987765422      13566888887764221111  0000 


Q ss_pred             chHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191          268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       268 ~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ...-+.++++++.|.++.+.+..+  +  ..  .+++|++|+++.+. .+...    +..+|+|+.|.+.+
T Consensus       243 ~~~~~~~~~~L~~L~Ls~N~l~~l--p--~~--~~~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~  303 (310)
T 4glp_A          243 SAPRCMWSSALNSLNLSFAGLEQV--P--KG--LPAKLRVLDLSSNRLNRAPQ----PDELPEVDNLTLDG  303 (310)
T ss_dssp             CCSSCCCCTTCCCEECCSSCCCSC--C--SC--CCSCCSCEECCSCCCCSCCC----TTSCCCCSCEECSS
T ss_pred             hHHhccCcCcCCEEECCCCCCCch--h--hh--hcCCCCEEECCCCcCCCCch----hhhCCCccEEECcC
Confidence            011122337999999988776532  1  11  23799999998872 22221    47789999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.49  E-value=2.2e-05  Score=72.72  Aligned_cols=38  Identities=34%  Similarity=0.560  Sum_probs=35.2

Q ss_pred             CCCccCCCChH----HHHHHHcCCChhhhhhhhccccchHHh
Q 047191            3 PAYRINALPDS----VLCHILSYLPTKNVVATSILARRWKLV   40 (341)
Q Consensus         3 ~~d~is~LPd~----iL~~Ils~Lp~~~~~~~s~vskrWr~l   40 (341)
                      ..|.|+.||+|    ++.+||+||+.+++++++.|||+|+++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46889999999    999999999999999999999999843

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.47  E-value=3.7e-05  Score=74.74  Aligned_cols=15  Identities=27%  Similarity=0.204  Sum_probs=7.3

Q ss_pred             hhcCCCceEEEEecc
Q 047191          272 LQQLNNTTSLTVSYG  286 (341)
Q Consensus       272 l~~~~~l~~L~l~~~  286 (341)
                      +..+++++.|.++.+
T Consensus       193 l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GTTCTTCSEEECCSE
T ss_pred             HccCCCCCEEEccCC
Confidence            344455555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.47  E-value=1.5e-05  Score=68.37  Aligned_cols=170  Identities=15%  Similarity=0.113  Sum_probs=87.2

Q ss_pred             cceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceE
Q 047191          125 SVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQC  202 (341)
Q Consensus       125 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L  202 (341)
                      ..+.+++ .+..+...|... .++|+.|  .|.+  ++.-.- ..+.++++|+.|++.++.-.+... ..--..++|+.|
T Consensus        15 ~~~~l~~-~~~~l~~~p~~~-~~~l~~L--~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L   88 (251)
T 3m19_A           15 GKKEVDC-QGKSLDSVPSGI-PADTEKL--DLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTL   88 (251)
T ss_dssp             GGTEEEC-TTCCCSSCCSCC-CTTCCEE--ECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEE
T ss_pred             CCeEEec-CCCCccccCCCC-CCCCCEE--EccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEE
Confidence            3445555 444443332222 1556666  6655  222111 124456666666666653321110 000123456666


Q ss_pred             EEeeecCccccccCceeEEEecCCceEEEeeccccCcee---ecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCce
Q 047191          203 TLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTT  279 (341)
Q Consensus       203 ~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~  279 (341)
                      .+.++.-...    .....-..++|++|.+.+.....+.   +..+++|+.+++.-.....  ..    ...+..+++++
T Consensus        89 ~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~~~~l~~L~  158 (251)
T 3m19_A           89 GLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--IP----AGAFDKLTNLQ  158 (251)
T ss_dssp             ECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTTTCTTCC
T ss_pred             ECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--cC----HHHcCcCcCCC
Confidence            6655211110    0000013688999999876554332   4667888887764321111  00    33566788999


Q ss_pred             EEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      .|.++.+.+..+..   ..+..+++|++|++..+
T Consensus       159 ~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          159 TLSLSTNQLQSVPH---GAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             EEECCSSCCSCCCT---TTTTTCTTCCEEECCSC
T ss_pred             EEECCCCcCCccCH---HHHhCCCCCCEEEeeCC
Confidence            99998876553311   12336778999999887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.40  E-value=1e-05  Score=65.25  Aligned_cols=82  Identities=7%  Similarity=-0.009  Sum_probs=60.4

Q ss_pred             CchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE-EEe-----CCCcceEEEeeecCccccccCce
Q 047191          147 PNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF-VIS-----SSTLKQCTLWVETEGEMFTQAEY  218 (341)
Q Consensus       147 ~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l-~i~-----~~sL~~L~i~~c~~~~~~~~~~~  218 (341)
                      .+|+.|  +|.+  +++.++..+ ++|++|+.|+|.+|......  .+ .+.     +++|++|++++|...++  .+..
T Consensus        61 ~~L~~L--DLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~--gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~  133 (176)
T 3e4g_A           61 YKIQAI--DATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDG--CLERLSQLENLQKSMLEMEIISCGNVTD--KGII  133 (176)
T ss_dssp             CCEEEE--EEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHH--HHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHH
T ss_pred             ceEeEE--eCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHH--HHHHHHhcccccCCCCEEEcCCCCcCCH--HHHH
Confidence            579999  9999  999999885 89999999999999643211  11 222     35799999999866554  3333


Q ss_pred             eEEEecCCceEEEeeccc
Q 047191          219 KVRITAPSLERLHIMSDI  236 (341)
Q Consensus       219 ~~~~~~p~L~~l~~~~~~  236 (341)
                      .+. .+|+|++|.++++.
T Consensus       134 ~L~-~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 ALH-HFRNLKYLFLSDLP  150 (176)
T ss_dssp             HGG-GCTTCCEEEEESCT
T ss_pred             HHh-cCCCCCEEECCCCC
Confidence            333 57999999988764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.40  E-value=4.2e-05  Score=67.23  Aligned_cols=193  Identities=15%  Similarity=0.037  Sum_probs=119.3

Q ss_pred             cccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191          121 YASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST  198 (341)
Q Consensus       121 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s  198 (341)
                      ...++++.+++ .+..+...|... +++++.|  +|.+  ++.-.- ..+.+++.|+.|.+.++.-....  .. -..++
T Consensus         7 ~~l~~l~~l~~-~~~~l~~ip~~~-~~~l~~L--~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~-~~l~~   78 (290)
T 1p9a_G            7 SKVASHLEVNC-DKRNLTALPPDL-PKDTTIL--HLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQ--VD-GTLPV   78 (290)
T ss_dssp             ECSTTCCEEEC-TTSCCSSCCSCC-CTTCCEE--ECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEE--CC-SCCTT
T ss_pred             cccCCccEEEC-CCCCCCcCCCCC-CCCCCEE--EcCCCcCCccCH-HHhhcCCCCCEEECCCCccCccc--CC-CCCCc
Confidence            44678889999 766665543322 4789999  9988  443322 33678999999999887543211  11 24578


Q ss_pred             cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191          199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL  275 (341)
Q Consensus       199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~  275 (341)
                      |+.|.+..+.-..     ........|+|++|.+++......   .+..+++|+.+++.-.....  ..    ...+..+
T Consensus        79 L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~~~~l  147 (290)
T 1p9a_G           79 LGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--LP----PGLLTPT  147 (290)
T ss_dssp             CCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--CC----TTTTTTC
T ss_pred             CCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc--cC----hhhcccc
Confidence            9999998842111     111112468899999987765433   35677888887764221111  00    4456678


Q ss_pred             CCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          276 NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       276 ~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ++++.|.++.+.+..+.   ...+..+++|++|++..+...  .+..-+...++|+.|.+.+
T Consensus       148 ~~L~~L~L~~N~l~~l~---~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          148 PKLEKLSLANNNLTELP---AGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             TTCCEEECTTSCCSCCC---TTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCS
T ss_pred             cCCCEEECCCCcCCccC---HHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCC
Confidence            99999999887665331   122346778999999886211  1222234457888887764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.39  E-value=3.9e-05  Score=60.01  Aligned_cols=36  Identities=14%  Similarity=0.002  Sum_probs=19.5

Q ss_pred             CCCcccEEEEEEcC-CCh-hHHHHHHhcCCCCCcEEEe
Q 047191          301 ALSYLQHLEVAVGA-IGW-AVLPVILSSSVHLQSLVLR  336 (341)
Q Consensus       301 ~f~~L~~L~l~~~~-~~~-~~l~~ll~~cp~L~~L~l~  336 (341)
                      .+++|++|++..+. .+. ......+..+|+|+.|++.
T Consensus       111 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            44566666665541 111 1123467777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.36  E-value=1e-05  Score=70.10  Aligned_cols=159  Identities=11%  Similarity=0.069  Sum_probs=90.3

Q ss_pred             ceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEE
Q 047191          126 VEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCT  203 (341)
Q Consensus       126 L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~  203 (341)
                      ++.+.+ +...+...+....+++|+.|  .+.+  +++-.   -+..++.|+.|.+.++.-.+..  . --..++|+.|.
T Consensus        21 l~~l~l-~~~~i~~~~~~~~l~~L~~L--~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~   91 (263)
T 1xeu_A           21 AVKQNL-GKQSVTDLVSQKELSGVQNF--NGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHH-TCSCTTSEECHHHHTTCSEE--ECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEE
T ss_pred             HHHHHh-cCCCcccccchhhcCcCcEE--ECcCCCcccch---HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEE
Confidence            333444 43333332234567888888  8887  44322   3677899999999887554333  2 11346788888


Q ss_pred             EeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEE
Q 047191          204 LWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLT  282 (341)
Q Consensus       204 i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  282 (341)
                      +.++.-...     ..+.  .++|++|.+++...... .+..+++|+.+++.-..     +.   ....+..+++++.|.
T Consensus        92 L~~N~l~~l-----~~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~-----i~---~~~~l~~l~~L~~L~  156 (263)
T 1xeu_A           92 VNRNRLKNL-----NGIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK-----LK---SIVMLGFLSKLEVLD  156 (263)
T ss_dssp             CCSSCCSCC-----TTCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC-----CC---BCGGGGGCTTCCEEE
T ss_pred             CCCCccCCc-----Cccc--cCcccEEEccCCccCCChhhcCcccccEEECCCCc-----CC---CChHHccCCCCCEEE
Confidence            887422111     1111  17888888887654432 35566777766553211     11   022455677777777


Q ss_pred             EecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          283 VSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       283 l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      ++.+.+..+     ..+..+++|+.|++..+
T Consensus       157 L~~N~i~~~-----~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          157 LHGNEITNT-----GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CTTSCCCBC-----TTSTTCCCCCEEEEEEE
T ss_pred             CCCCcCcch-----HHhccCCCCCEEeCCCC
Confidence            776654332     22335667777777765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.34  E-value=2.7e-05  Score=64.21  Aligned_cols=62  Identities=11%  Similarity=0.067  Sum_probs=44.8

Q ss_pred             cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeec
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLN  184 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~  184 (341)
                      .+..+++|++|.+ +++.+..++....+++|++|  .+.+  +++..... ++.+|+|+.|.+.++.-
T Consensus        61 ~l~~l~~L~~L~l-~~n~~~~~~~l~~l~~L~~L--~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           61 GIEYAHNIKDLTI-NNIHATNYNPISGLSNLERL--RIMGKDVTSDKIPN-LSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             TGGGCTTCSEEEE-ESCCCSCCGGGTTCTTCCEE--EEECTTCBGGGSCC-CTTCTTCCEEECCSSBC
T ss_pred             HHhcCCCCCEEEc-cCCCCCcchhhhcCCCCCEE--EeECCccCcccChh-hcCCCCCCEEEecCCcc
Confidence            4556788999999 76666655456678899999  8888  55433333 56788899998888754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.31  E-value=0.00017  Score=57.52  Aligned_cols=69  Identities=17%  Similarity=0.042  Sum_probs=44.4

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChh-HHHHHHhcCCCCCcEEEeeee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWA-VLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~-~l~~ll~~cp~L~~L~l~~~~  339 (341)
                      ..++..+++++.|.++.+.+..+.  ....+..+++|++|++..+ -.... .....+..+|+|+.|++.+..
T Consensus        88 ~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           88 DMLAEKLPNLTHLNLSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CHHHHHCTTCCEEECBSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             HHHHhhCCCCCEEeccCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            445566888888888887654331  1122346778899988887 22222 223577888999998877643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.29  E-value=6.8e-05  Score=72.24  Aligned_cols=68  Identities=15%  Similarity=0.103  Sum_probs=33.2

Q ss_pred             CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcce
Q 047191          124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQ  201 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~  201 (341)
                      ++|+.|+| ++..+...|  ..+++|+.|  +|.+  ++.  +.. +.  .+|+.|++.++.-.+++  .   ..++|+.
T Consensus        80 ~~L~~L~L-s~N~l~~ip--~~l~~L~~L--~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~l~~lp--~---~l~~L~~  144 (571)
T 3cvr_A           80 PQITVLEI-TQNALISLP--ELPASLEYL--DACDNRLST--LPE-LP--ASLKHLDVDNNQLTMLP--E---LPALLEY  144 (571)
T ss_dssp             TTCSEEEC-CSSCCSCCC--CCCTTCCEE--ECCSSCCSC--CCC-CC--TTCCEEECCSSCCSCCC--C---CCTTCCE
T ss_pred             CCCCEEEC-cCCCCcccc--cccCCCCEE--EccCCCCCC--cch-hh--cCCCEEECCCCcCCCCC--C---cCccccE
Confidence            45666666 544444332  334566666  6555  322  111 21  16666666655443333  2   3455666


Q ss_pred             EEEee
Q 047191          202 CTLWV  206 (341)
Q Consensus       202 L~i~~  206 (341)
                      |.+.+
T Consensus       145 L~Ls~  149 (571)
T 3cvr_A          145 INADN  149 (571)
T ss_dssp             EECCS
T ss_pred             EeCCC
Confidence            66655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.25  E-value=0.0001  Score=63.09  Aligned_cols=151  Identities=14%  Similarity=0.077  Sum_probs=93.6

Q ss_pred             CcceEEEEeeeeeeccC-C-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          124 PSVEVLKLMSDFLLKVP-A-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      +.|+.|+| ++..+... + ...++++|+.|  +|.+  ++.. ....+.+++.|+.|.+.++.-..... ...-..++|
T Consensus        35 ~~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  109 (251)
T 3m19_A           35 ADTEKLDL-QSTGLATLSDATFRGLTKLTWL--NLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQL  109 (251)
T ss_dssp             TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEE--ECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCEEEc-cCCCcCccCHhHhcCcccCCEE--ECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccCh-hHhcccCCC
Confidence            57889999 76665433 2 34568899999  8888  4332 22335778999999998875432110 001134688


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +.|.+.++.-...    ....--..++|++|.+.+.....+   .+..+++|+.+++.......  +.    ...+..++
T Consensus       110 ~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~~~~l~  179 (251)
T 3m19_A          110 DKLYLGGNQLKSL----PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS--VP----HGAFDRLG  179 (251)
T ss_dssp             CEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CC----TTTTTTCT
T ss_pred             CEEEcCCCcCCCc----ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc--cC----HHHHhCCC
Confidence            9998887421111    000011368999999988765433   35677889988775321111  10    44567889


Q ss_pred             CceEEEEecchhh
Q 047191          277 NTTSLTVSYGVLC  289 (341)
Q Consensus       277 ~l~~L~l~~~~~~  289 (341)
                      +++.|.++.+.+.
T Consensus       180 ~L~~L~l~~N~~~  192 (251)
T 3m19_A          180 KLQTITLFGNQFD  192 (251)
T ss_dssp             TCCEEECCSCCBC
T ss_pred             CCCEEEeeCCcee
Confidence            9999999987654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.21  E-value=0.00011  Score=59.35  Aligned_cols=63  Identities=17%  Similarity=0.144  Sum_probs=28.1

Q ss_pred             hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-C-hhHHHHHHhcCCCCCcEEEee
Q 047191          273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-G-WAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~-~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..+++++.|.++.+.+..+.  ....+..+++|+.|++..+.. . ...-...+..+|+|+.|++.+
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~--~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELG--DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGG--GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             hcCCCCCEEECCCCcCCcch--hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence            45555555555554432221  011122445566666655411 1 111123455666666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.16  E-value=0.00048  Score=58.33  Aligned_cols=168  Identities=14%  Similarity=0.059  Sum_probs=99.7

Q ss_pred             cccccCcceEEEEeeeee-ec-cCC-CcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191          119 ELYASPSVEVLKLMSDFL-LK-VPA-GGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF  192 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~-l~-~~~-~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l  192 (341)
                      .+..+++|++|++ ++.. +. .++ ...++++|+.|  .|.+   ++.-. ...+.++++|+.|.+.++.-.+++  . 
T Consensus        50 ~~~~l~~L~~L~l-~~n~~l~~i~~~~f~~l~~L~~L--~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~lp--~-  122 (239)
T 2xwt_C           50 AFSNLPNISRIYV-SIDVTLQQLESHSFYNLSKVTHI--EIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKMFP--D-  122 (239)
T ss_dssp             TTTTCTTCCEEEE-ECCSSCCEECTTTEESCTTCCEE--EEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCSCC--C-
T ss_pred             HccCCCCCcEEeC-CCCCCcceeCHhHcCCCcCCcEE--ECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcccc--c-
Confidence            4556899999999 6553 43 332 34578999999  8863   33211 123668999999999998654333  2 


Q ss_pred             EEeCCCcc---eEEEeeecCccccccCceeEE----EecCCce-EEEeeccccCcee---ecCCCCeeEEEEEEEeCccc
Q 047191          193 VISSSTLK---QCTLWVETEGEMFTQAEYKVR----ITAPSLE-RLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWS  261 (341)
Q Consensus       193 ~i~~~sL~---~L~i~~c~~~~~~~~~~~~~~----~~~p~L~-~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~  261 (341)
                      .-..++|+   .|.+.++..       ...+.    -..++|+ +|.+.+.....+.   +.. ++|+.+.+.-..    
T Consensus       123 ~~~l~~L~~L~~L~l~~N~~-------l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~----  190 (239)
T 2xwt_C          123 LTKVYSTDIFFILEITDNPY-------MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNK----  190 (239)
T ss_dssp             CTTCCBCCSEEEEEEESCTT-------CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCT----
T ss_pred             cccccccccccEEECCCCcc-------hhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCC----
Confidence            11334566   888887311       11111    1367888 9998776544321   222 556665543210    


Q ss_pred             cCCCccchHHhhcC-CCceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191          262 RVDPNRSIQLLQQL-NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV  312 (341)
Q Consensus       262 ~~~~~~~~~~l~~~-~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~  312 (341)
                      .+... ....+.++ ++++.|.++.+.+..+..      ..|++|+.|.+..
T Consensus       191 ~l~~i-~~~~~~~l~~~L~~L~l~~N~l~~l~~------~~~~~L~~L~l~~  235 (239)
T 2xwt_C          191 YLTVI-DKDAFGGVYSGPSLLDVSQTSVTALPS------KGLEHLKELIARN  235 (239)
T ss_dssp             TCCEE-CTTTTTTCSBCCSEEECTTCCCCCCCC------TTCTTCSEEECTT
T ss_pred             CcccC-CHHHhhccccCCcEEECCCCccccCCh------hHhccCceeeccC
Confidence            01100 03456677 999999998876543311      1578899988753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.11  E-value=4.3e-05  Score=61.13  Aligned_cols=75  Identities=17%  Similarity=0.099  Sum_probs=43.9

Q ss_pred             CcceEEEEeeeeeec--cCCC-cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCC
Q 047191          124 PSVEVLKLMSDFLLK--VPAG-GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSS  197 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~--~~~~-~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~  197 (341)
                      ++|+.|++ .++.+.  ..+. ...+++|+.|  +|.+  ++.-   ..+..++.|+.|++.++.-.. ..  ...-..+
T Consensus        24 ~~L~~L~l-~~n~l~~~~i~~~~~~l~~L~~L--~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVL-DNCKSNDGKIEGLTAEFVNLEFL--SLINVGLISV---SNLPKLPKLKKLELSENRIFGGLD--MLAEKLP   95 (168)
T ss_dssp             TSCSEEEC-CSCBCBTTBCSSCCGGGGGCCEE--EEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCC--HHHHHCT
T ss_pred             ccCCEEEC-CCCCCChhhHHHHHHhCCCCCEE--eCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHH--HHHhhCC
Confidence            56778888 666554  3323 3557777777  7777  4332   446677777777777775432 12  1111245


Q ss_pred             CcceEEEee
Q 047191          198 TLKQCTLWV  206 (341)
Q Consensus       198 sL~~L~i~~  206 (341)
                      +|+.|.+.+
T Consensus        96 ~L~~L~Ls~  104 (168)
T 2ell_A           96 NLTHLNLSG  104 (168)
T ss_dssp             TCCEEECBS
T ss_pred             CCCEEeccC
Confidence            566666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.11  E-value=0.0001  Score=69.07  Aligned_cols=75  Identities=13%  Similarity=0.089  Sum_probs=41.5

Q ss_pred             cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS  196 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~  196 (341)
                      .+..+++|+.|++ +++.+...+.  ..++|+.|  ++.+  ++.  +.. +..++.|+.|.+.++.-.++.  .   ..
T Consensus       190 ~~~~l~~L~~L~l-~~N~l~~l~~--~~~~L~~L--~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l~--~---~~  256 (454)
T 1jl5_A          190 ELQNLPFLTAIYA-DNNSLKKLPD--LPLSLESI--VAGNNILEE--LPE-LQNLPFLTTIYADNNLLKTLP--D---LP  256 (454)
T ss_dssp             CCTTCTTCCEEEC-CSSCCSSCCC--CCTTCCEE--ECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSCC--S---CC
T ss_pred             cccCCCCCCEEEC-CCCcCCcCCC--CcCcccEE--ECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCccc--c---cc
Confidence            3455778888888 6555543322  12577777  7766  331  112 556777777777766433222  1   12


Q ss_pred             CCcceEEEee
Q 047191          197 STLKQCTLWV  206 (341)
Q Consensus       197 ~sL~~L~i~~  206 (341)
                      ++|+.|.+.+
T Consensus       257 ~~L~~L~l~~  266 (454)
T 1jl5_A          257 PSLEALNVRD  266 (454)
T ss_dssp             TTCCEEECCS
T ss_pred             cccCEEECCC
Confidence            4566666555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.09  E-value=0.00014  Score=64.43  Aligned_cols=105  Identities=18%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             CchhhhhhhccC--CCcchHHHHHh--cCCccceeEEeeeecCCCCceeEE-EeCCCcceEEEeeecCccccc-cCceeE
Q 047191          147 PNVKILTMQLES--PDNILTEKLFC--SCPSLEELSIQAYLNDEGPTTKFV-ISSSTLKQCTLWVETEGEMFT-QAEYKV  220 (341)
Q Consensus       147 ~~L~~L~~~L~~--~~~~~l~~ll~--~cp~Le~L~L~~c~~~~~~~~~l~-i~~~sL~~L~i~~c~~~~~~~-~~~~~~  220 (341)
                      ..++.|  .+..  +++..+..+..  .++.|++|.+.++.-.+..+..+. -..++|+.|++..+.-..... .....+
T Consensus        64 ~~l~~l--~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRL--TVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEE--EECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEE--EEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            345666  6666  66666665543  467799999998854321200111 346788999998842111000 000111


Q ss_pred             EEecCCceEEEeeccccCce---eecCCCCeeEEEEE
Q 047191          221 RITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILD  254 (341)
Q Consensus       221 ~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~  254 (341)
                      . ..|+|++|.+++......   .+..+++|+.+++.
T Consensus       142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  177 (310)
T 4glp_A          142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS  177 (310)
T ss_dssp             T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred             h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence            1 477888888877654322   23455666665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.99  E-value=3.4e-06  Score=77.04  Aligned_cols=57  Identities=18%  Similarity=0.120  Sum_probs=34.3

Q ss_pred             CcceEEEEeeeeeeccCC-----C--cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          124 PSVEVLKLMSDFLLKVPA-----G--GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~-----~--~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      +.|++|+| +++.+....     .  ....++|+.|  +|.+  +++.++..+...+++|+.|+|.+|.
T Consensus        72 ~~L~~L~L-s~n~l~~~~~~~l~~~L~~~~~~L~~L--~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~  137 (372)
T 3un9_A           72 SSLRQLNL-AGVRMTPVKCTVVAAVLGSGRHALDEV--NLASCQLDPAGLRTLLPVFLRARKLGLQLNS  137 (372)
T ss_dssp             TTCCEEEC-TTSCCCHHHHHHHHHHHSSCSSCEEEE--ECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred             hhCCEEEe-cCCCCCHHHHHHHHHHHhhCCCCceEE--EecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence            45777777 555443210     0  0122577777  7777  7777777766666777777777763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=96.97  E-value=1.9e-05  Score=68.75  Aligned_cols=193  Identities=17%  Similarity=0.095  Sum_probs=114.0

Q ss_pred             CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ++|++|++ ++..+.. ++ ...++++|++|  +|.+  ++.-. ...+.+++.|+.|++.++.-..... ..--..++|
T Consensus        28 ~~l~~L~l-s~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDL-SFNPLRHLGSYSFFSFPELQVL--DLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL  102 (276)
T ss_dssp             TTCCEEEC-TTCCCCEECTTTTTTCTTCSEE--ECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred             CCccEEEC-CCCcccccCHhHhccccCCcEE--ECCCCcCCccC-HHHccCCcCCCEEECCCCccCccCh-hhhcCCccc
Confidence            57999999 7665543 22 45578999999  9988  44322 2236789999999998875321000 001134689


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc----eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL  275 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~  275 (341)
                      +.|.+..+.-...    ........++|++|.+.+.....    ..+..+++|+.+++.......  ..    ...+..+
T Consensus       103 ~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~~~~l  172 (276)
T 2z62_A          103 QKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IY----CTDLRVL  172 (276)
T ss_dssp             CEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--EC----GGGGHHH
T ss_pred             cEEECCCCCcccc----CchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--CC----HHHhhhh
Confidence            9999887422111    01012246899999998765433    236677888887764321111  00    2223333


Q ss_pred             CCce----EEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEee
Q 047191          276 NNTT----SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       276 ~~l~----~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ++++    .|.++.+.+..+..    ......+|++|++..+.. ...  ...+..+|+|+.|++.+
T Consensus       173 ~~L~~l~l~L~ls~n~l~~~~~----~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNPMNFIQP----GAFKEIRLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             HTCTTCCEEEECCSSCCCEECT----TSSCSCCEEEEECCSSCCSCCC--TTTTTTCCSCCEEECCS
T ss_pred             hhccccceeeecCCCcccccCc----cccCCCcccEEECCCCceeecC--HhHhcccccccEEEccC
Confidence            4444    67777665543311    111334799999988721 211  24567899999999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.97  E-value=0.00015  Score=67.92  Aligned_cols=139  Identities=14%  Similarity=0.107  Sum_probs=62.4

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|+.|++ ++..+...|.  ..++|++|  ++.+  ++.  +.. +.++++|+.|.+.++.-.++.  .   ..+
T Consensus       149 ~~~l~~L~~L~l-~~N~l~~lp~--~~~~L~~L--~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~l~~l~--~---~~~  215 (454)
T 1jl5_A          149 LQNSSFLKIIDV-DNNSLKKLPD--LPPSLEFI--AAGNNQLEE--LPE-LQNLPFLTAIYADNNSLKKLP--D---LPL  215 (454)
T ss_dssp             CTTCTTCCEEEC-CSSCCSCCCC--CCTTCCEE--ECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSCC--C---CCT
T ss_pred             cCCCCCCCEEEC-CCCcCcccCC--CcccccEE--ECcCCcCCc--Ccc-ccCCCCCCEEECCCCcCCcCC--C---CcC
Confidence            444555666666 4444332211  12456666  5555  222  111 455666666666665433222  1   124


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNN  277 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  277 (341)
                      +|+.|.+.+|.-..     ... ....++|++|.+++.....+. ...++|+.+++....     +     ..+....++
T Consensus       216 ~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N~-----l-----~~l~~~~~~  278 (454)
T 1jl5_A          216 SLESIVAGNNILEE-----LPE-LQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNY-----L-----TDLPELPQS  278 (454)
T ss_dssp             TCCEEECCSSCCSS-----CCC-CTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSC-----C-----SCCCCCCTT
T ss_pred             cccEEECcCCcCCc-----ccc-cCCCCCCCEEECCCCcCCccc-ccccccCEEECCCCc-----c-----cccCcccCc
Confidence            66666666632111     111 113566666666654332211 122455554442110     0     111223466


Q ss_pred             ceEEEEecchh
Q 047191          278 TTSLTVSYGVL  288 (341)
Q Consensus       278 l~~L~l~~~~~  288 (341)
                      ++.|.++.+.+
T Consensus       279 L~~L~ls~N~l  289 (454)
T 1jl5_A          279 LTFLDVSENIF  289 (454)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECcCCcc
Confidence            77777766544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.88  E-value=0.00052  Score=57.52  Aligned_cols=53  Identities=21%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHhc
Q 047191          271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILSS  326 (341)
Q Consensus       271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~~  326 (341)
                      .+..+++++.|.++.+.+..+..   ..+..+++|+.|++..+    .....++...++.
T Consensus       123 ~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~  179 (220)
T 2v9t_B          123 AFQDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT  179 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             HcCCCCCCCEEECCCCcCCEECH---HHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence            34466777777777766543311   12335667888888776    2234555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=96.77  E-value=0.00098  Score=58.92  Aligned_cols=204  Identities=15%  Similarity=-0.004  Sum_probs=104.9

Q ss_pred             CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHH-------hcCCccceeEEeeeecCCCCceeE-E
Q 047191          124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLF-------CSCPSLEELSIQAYLNDEGPTTKF-V  193 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll-------~~cp~Le~L~L~~c~~~~~~~~~l-~  193 (341)
                      .+|+.|.+ .+..+..| ... ...|+.|  +|.+  ++...+...+       .+++.|+.|++.++.-.+..+..+ .
T Consensus        43 ~~L~~l~l-~~n~l~~p-~~~-~~~L~~L--~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLK-RVDTEADL-GQF-TDIIKSL--SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHH-HCCTTCCC-HHH-HHHHHHC--CCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEee-cccccccH-HHH-HHHHhhc--ccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            44555555 44333222 211 1348888  8887  4332222222       268999999999986432110011 1


Q ss_pred             EeCCCcceEEEeeecCccccccCceeEEE----ecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccc-cCCC
Q 047191          194 ISSSTLKQCTLWVETEGEMFTQAEYKVRI----TAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWS-RVDP  265 (341)
Q Consensus       194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~----~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~-~~~~  265 (341)
                      -..++|+.|++.++.-.+.    ...+.-    ..++|++|.+++......   .+..+++|+.+++.-...... .+- 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~----~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-  192 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR----DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI-  192 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS----SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH-
T ss_pred             hcCCCccEEEccCCCCcch----hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH-
Confidence            3567899999998421110    000000    128899999987755432   356777888776642211000 000 


Q ss_pred             ccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191          266 NRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI  339 (341)
Q Consensus       266 ~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~  339 (341)
                        ....+..+++++.|.++.+.+..+.......+..+++|++|++..+......-......+++|+.|++.+-.
T Consensus       193 --~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          193 --SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             --HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             --HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence              011126778888888887765422100000011456888888877621110001123446888888876533

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.76  E-value=0.00011  Score=59.28  Aligned_cols=57  Identities=11%  Similarity=0.056  Sum_probs=32.5

Q ss_pred             cccCcceEEEEeeeeeeccCCCcccC-CchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          121 YASPSVEVLKLMSDFLLKVPAGGTCF-PNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       121 ~~~~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      ..+.+|+.|.+ +++.+...+....+ ++|+.|  +|.+  +++-   .-+..++.|+.|++.++.
T Consensus        16 ~~~~~L~~L~l-~~n~l~~i~~~~~~~~~L~~L--~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           16 TNAVRDRELDL-RGYKIPVIENLGATLDQFDAI--DFSDNEIRKL---DGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             ECTTSCEEEEC-TTSCCCSCCCGGGGTTCCSEE--ECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred             CCcCCceEEEe-eCCCCchhHHhhhcCCCCCEE--ECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence            44677888888 65555443333333 367777  6666  3332   234556666666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.70  E-value=3.1e-06  Score=81.74  Aligned_cols=195  Identities=10%  Similarity=-0.017  Sum_probs=108.2

Q ss_pred             cccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC-C-------------CcchHHHHHhcCCccceeE-Eeeeec
Q 047191          121 YASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES-P-------------DNILTEKLFCSCPSLEELS-IQAYLN  184 (341)
Q Consensus       121 ~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~-~-------------~~~~l~~ll~~cp~Le~L~-L~~c~~  184 (341)
                      ..++.|++|+| ++..+.. |.....+++|+.|  .+.. .             ........+..+++|+.|+ +..-.-
T Consensus       346 ~~~~~L~~L~L-s~n~L~~Lp~~i~~l~~L~~L--~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCEL-SVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCC-CHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccC-ChhhHHhhHHHHHHHHHHHHh--ccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            34677777777 5544432 3234456777777  6644 2             2233445566677777776 221100


Q ss_pred             CCCCc------eeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCCCeeEEEEEEE
Q 047191          185 DEGPT------TKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIV  256 (341)
Q Consensus       185 ~~~~~------~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~~L~~~~l~~~  256 (341)
                      ..+..      ..-.+....|+.|.+.++.-..     ... .-..++|+.|.+++.....+  .+..+++|+.+++.-.
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN  496 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence            00000      0001122357777777631111     111 22467888888887655432  4667788888776432


Q ss_pred             eCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc--CCChhHHHHHHhcCCCCCcEE
Q 047191          257 YGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG--AIGWAVLPVILSSSVHLQSLV  334 (341)
Q Consensus       257 ~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~--~~~~~~l~~ll~~cp~L~~L~  334 (341)
                      ....        ..-+..+++++.|.++.+.+..+..  ...+..+++|+.|+|..+  .........+...+|+|+.|.
T Consensus       497 ~l~~--------lp~l~~l~~L~~L~Ls~N~l~~~~~--p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          497 ALEN--------VDGVANLPRLQELLLCNNRLQQSAA--IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCC--------CGGGTTCSSCCEEECCSSCCCSSST--TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCC--------CcccCCCCCCcEEECCCCCCCCCCC--cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            1111        2246678999999998876543310  112336778999999887  112234556777899999885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.66  E-value=0.0019  Score=62.53  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=30.2

Q ss_pred             cccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          119 ELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      .+..+++|++|+| +++.+.. ++ ...++++|++|  +|.+  ++.-. ...+.++++|+.|++.++.
T Consensus        71 ~f~~l~~L~~L~L-s~N~i~~i~~~~f~~L~~L~~L--~Ls~N~l~~l~-~~~f~~L~~L~~L~Ls~N~  135 (635)
T 4g8a_A           71 SFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTL--ILTGNPIQSLA-LGAFSGLSSLQKLVAVETN  135 (635)
T ss_dssp             TTTTCTTCCEEEC-TTCCCCEECTTTTTTCTTCCEE--ECTTCCCCEEC-GGGGTTCTTCCEEECTTSC
T ss_pred             HHhCCCCCCEEEC-CCCcCCCcChhHhcCCCCCCEE--EccCCcCCCCC-HHHhcCCCCCCEEECCCCc
Confidence            3444566666666 5444422 22 23345666666  6655  32211 1224556666666666653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=96.63  E-value=8.7e-05  Score=58.01  Aligned_cols=117  Identities=14%  Similarity=0.065  Sum_probs=50.8

Q ss_pred             CcceEEEEeeeeeec--cCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCC
Q 047191          124 PSVEVLKLMSDFLLK--VPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSS  197 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~--~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~  197 (341)
                      ++|+.|++ +++.+.  ..+ ....+++|+.|  ++.+  ++.-   ..+..++.|+.|++.++.-.+ ..  ...-..+
T Consensus        17 ~~l~~L~l-~~n~l~~~~~~~~~~~l~~L~~L--~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVL-DNSRSNEGKLEGLTDEFEELEFL--STINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLE--VLAEKCP   88 (149)
T ss_dssp             GGCSEEEC-TTCBCBTTBCCSCCTTCTTCCEE--ECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTH--HHHHHCT
T ss_pred             ccCeEEEc-cCCcCChhHHHHHHhhcCCCcEE--ECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHH--HHhhhCC
Confidence            34555555 444443  221 22345555555  5555  3222   334455555555555554322 11  1111244


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce------eecCCCCeeEE
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF------VVHDLNSLTDV  251 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~------~~~~~~~L~~~  251 (341)
                      +|+.|.+.+|.-...   .........|+|++|.+++......      .+..+++|+.+
T Consensus        89 ~L~~L~ls~N~i~~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           89 NLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             TCCEEECTTSCCCSH---HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCcCCCh---HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence            555555555311110   0001112356677777765543221      24455666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.54  E-value=0.00021  Score=58.79  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=19.0

Q ss_pred             cCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeec
Q 047191          145 CFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLN  184 (341)
Q Consensus       145 ~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~  184 (341)
                      .+++|+.|  +|.+  ++.  +. .+.+++.|+.|.+.++.-
T Consensus        46 ~l~~L~~L--~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l   82 (198)
T 1ds9_A           46 TLKACKHL--ALSTNNIEK--IS-SLSGMENLRILSLGRNLI   82 (198)
T ss_dssp             HTTTCSEE--ECSEEEESC--CC-CHHHHTTCCEEEEEEEEE
T ss_pred             cCCCCCEE--ECCCCCCcc--cc-ccccCCCCCEEECCCCCc
Confidence            34555555  5554  222  11 245567777777777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.42  E-value=0.00082  Score=55.52  Aligned_cols=14  Identities=21%  Similarity=0.178  Sum_probs=6.8

Q ss_pred             hcCCccceeEEeee
Q 047191          169 CSCPSLEELSIQAY  182 (341)
Q Consensus       169 ~~cp~Le~L~L~~c  182 (341)
                      .+++.|+.|++.++
T Consensus        73 ~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           73 NKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             CCCCCcCEEECCCC
Confidence            34455555555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.40  E-value=0.00067  Score=56.07  Aligned_cols=130  Identities=16%  Similarity=0.136  Sum_probs=67.8

Q ss_pred             CCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEe
Q 047191          146 FPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRIT  223 (341)
Q Consensus       146 ~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~  223 (341)
                      .++|+.|  +|.+  ++. .....+.+++.|+.|++.++.-..... ...-..++|+.|++.++.-...    .....-.
T Consensus        27 ~~~l~~L--~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~   98 (208)
T 2o6s_A           27 PAQTTYL--DLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQLQSL----PNGVFDK   98 (208)
T ss_dssp             CTTCSEE--ECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC----CTTTTTT
T ss_pred             CCCCcEE--EcCCCccCc-CChhhhcccccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCcCCcc----CHhHhcC
Confidence            4678888  8877  432 222335778999999998874332110 0001234566666665211000    0000011


Q ss_pred             cCCceEEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCC
Q 047191          224 APSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALS  303 (341)
Q Consensus       224 ~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~  303 (341)
                      .++|++|.+.+....     .                  ..    ...+..+++++.|.++.+.+..+.   ...+..++
T Consensus        99 l~~L~~L~L~~N~l~-----~------------------~~----~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~  148 (208)
T 2o6s_A           99 LTQLKELALNTNQLQ-----S------------------LP----DGVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLT  148 (208)
T ss_dssp             CTTCCEEECCSSCCC-----C------------------CC----TTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCT
T ss_pred             ccCCCEEEcCCCcCc-----c------------------cC----HhHhccCCcCCEEECCCCccceeC---HHHhccCC
Confidence            334444444332110     0                  00    334567889999999887654321   11234577


Q ss_pred             cccEEEEEEc
Q 047191          304 YLQHLEVAVG  313 (341)
Q Consensus       304 ~L~~L~l~~~  313 (341)
                      +|++|++..+
T Consensus       149 ~L~~L~l~~N  158 (208)
T 2o6s_A          149 SLQYIWLHDN  158 (208)
T ss_dssp             TCCEEECCSC
T ss_pred             CccEEEecCC
Confidence            8999999876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.40  E-value=0.0019  Score=62.07  Aligned_cols=68  Identities=18%  Similarity=0.129  Sum_probs=29.7

Q ss_pred             cceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceE
Q 047191          125 SVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQC  202 (341)
Q Consensus       125 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L  202 (341)
                      +|+.|+| .+..+...|... +++|++|  +|.+  ++.  +.   ..+++|+.|++.++.-.+++  .  +. .+|+.|
T Consensus        60 ~L~~L~L-s~n~L~~lp~~l-~~~L~~L--~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~ip--~--l~-~~L~~L  125 (571)
T 3cvr_A           60 QFSELQL-NRLNLSSLPDNL-PPQITVL--EITQNALIS--LP---ELPASLEYLDACDNRLSTLP--E--LP-ASLKHL  125 (571)
T ss_dssp             TCSEEEC-CSSCCSCCCSCC-CTTCSEE--ECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCC--C--CC-TTCCEE
T ss_pred             CccEEEe-CCCCCCccCHhH-cCCCCEE--ECcCCCCcc--cc---cccCCCCEEEccCCCCCCcc--h--hh-cCCCEE
Confidence            4555555 444333222211 3555555  5555  321  11   33455555555555333323  2  11 255555


Q ss_pred             EEee
Q 047191          203 TLWV  206 (341)
Q Consensus       203 ~i~~  206 (341)
                      .+.+
T Consensus       126 ~Ls~  129 (571)
T 3cvr_A          126 DVDN  129 (571)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            5555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.24  E-value=0.0006  Score=61.68  Aligned_cols=38  Identities=18%  Similarity=0.055  Sum_probs=20.1

Q ss_pred             hcCCCceEEEEecchhhhccccccCCCCCCCc--ccEEEEEEc
Q 047191          273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSY--LQHLEVAVG  313 (341)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~--L~~L~l~~~  313 (341)
                      ..+++++.|.++.+.+..+....+.   .+++  |+.|+|..+
T Consensus       160 ~~l~~L~~L~L~~N~l~~l~~~~~~---~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          160 NKLPKLMLLDLSSNKLKKLPLTDLQ---KLPAWVKNGLYLHNN  199 (361)
T ss_dssp             --CTTCCEEECCSSCCCCCCHHHHH---HSCHHHHTTEECCSS
T ss_pred             ccCCcCCEEECCCCCCCccCHHHhh---hccHhhcceEEecCC
Confidence            4577888888877665433211111   2333  366777765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.17  E-value=0.00075  Score=65.36  Aligned_cols=105  Identities=22%  Similarity=0.194  Sum_probs=48.7

Q ss_pred             cCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191          224 APSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP  300 (341)
Q Consensus       224 ~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~  300 (341)
                      .++|++|++++.....+   .+.++++|+.+++.-..-..  .    ....+.++++++.|.++.+.+..+.   ...+.
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l----~~~~f~~L~~L~~L~Ls~N~l~~l~---~~~~~  145 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--L----ALGAFSGLSSLQKLVAVETNLASLE---NFPIG  145 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--E----CGGGGTTCTTCCEEECTTSCCCCST---TCCCT
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--C----CHHHhcCCCCCCEEECCCCcCCCCC---hhhhh
Confidence            45666666655433322   24455566655543111000  0    0344556666666666655443221   11123


Q ss_pred             CCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          301 ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       301 ~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .+++|++|++..+......+..++..+++|+.|.+.+
T Consensus       146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             cCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence            4556666666655211111223455566666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.15  E-value=0.00082  Score=56.28  Aligned_cols=51  Identities=18%  Similarity=0.117  Sum_probs=30.0

Q ss_pred             hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHh
Q 047191          272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILS  325 (341)
Q Consensus       272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~  325 (341)
                      +..+++++.|.++.+.+..+.   ...+..+++|+.|++..+    .....++...++
T Consensus       125 ~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          125 FIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             STTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred             cCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence            446678888888776554331   122335678888888876    223345555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.03  E-value=0.0016  Score=58.55  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=23.4

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV  312 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~  312 (341)
                      ...+.++++++.|.++.+.+..+..      ..|.+|++|.+..
T Consensus       195 ~~~f~~l~~L~~LdLs~N~l~~lp~------~~~~~L~~L~~l~  232 (350)
T 4ay9_X          195 NDVFHGASGPVILDISRTRIHSLPS------YGLENLKKLRARS  232 (350)
T ss_dssp             TTTTTTEECCSEEECTTSCCCCCCS------SSCTTCCEEECTT
T ss_pred             HHHhccCcccchhhcCCCCcCccCh------hhhccchHhhhcc
Confidence            4556788999999998876543311      0345555555433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=95.81  E-value=0.0045  Score=51.69  Aligned_cols=103  Identities=17%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             cCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191          224 APSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP  300 (341)
Q Consensus       224 ~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~  300 (341)
                      .++|++|.+++......   .+.++++|+.+++.-.....  +.    ...+.++++++.|.++.+.+..+.   ...+.
T Consensus        55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~----~~~f~~l~~L~~L~L~~N~l~~~~---~~~~~  125 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LP----KSLFEGLFSLQLLLLNANKINCLR---VDAFQ  125 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CC----TTTTTTCTTCCEEECCSSCCCCCC---TTTTT
T ss_pred             CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cC----HhHccCCCCCCEEECCCCCCCEeC---HHHcC
Confidence            35666666665543322   24556666666553211110  10    445678899999999988765431   12344


Q ss_pred             CCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191          301 ALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       301 ~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .+++|++|+|..+. ....  ...+..+++|+.|++.+
T Consensus       126 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             TCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCcCCEEC--HHHHhCCCCCCEEEeCC
Confidence            67899999998872 1111  13466789999998865

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.68  E-value=0.026  Score=50.02  Aligned_cols=99  Identities=12%  Similarity=0.120  Sum_probs=58.0

Q ss_pred             cCCceEEEeeccccC---ceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCce-EEEEecchhhhccccccCCC
Q 047191          224 APSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTT-SLTVSYGVLCALDHAYHKWF  299 (341)
Q Consensus       224 ~p~L~~l~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~-~L~l~~~~~~~~~~~~~~~~  299 (341)
                      +++|+++.+.+....   ...+.++.+|+++.+.-.   -....    ...+.++++++ .+.+.. .+..+.   ...+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n---i~~I~----~~aF~~~~~L~~~l~l~~-~l~~I~---~~aF  293 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN---LKTIG----QRVFSNCGRLAGTLELPA-SVTAIE---FGAF  293 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT---CCEEC----TTTTTTCTTCCEEEEECT-TCCEEC---TTTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc---cceeh----HHHhhCChhccEEEEEcc-cceEEc---hhhh
Confidence            678888888764332   234677888888766321   00011    55567888888 888876 322221   1223


Q ss_pred             CCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEE
Q 047191          300 PALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVL  335 (341)
Q Consensus       300 ~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l  335 (341)
                      ..+++|+++.+..+ -....  ...+..|++|+.+..
T Consensus       294 ~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          294 MGCDNLRYVLATGDKITTLG--DELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTCTTEEEEEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred             hCCccCCEEEeCCCccCccc--hhhhcCCcchhhhcc
Confidence            36678888887544 11111  124678899988753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.60  E-value=0.0048  Score=55.65  Aligned_cols=151  Identities=15%  Similarity=0.053  Sum_probs=80.2

Q ss_pred             CCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEE----EecCCceEEEeeccccCce---eec
Q 047191          171 CPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVR----ITAPSLERLHIMSDIFGKF---VVH  243 (341)
Q Consensus       171 cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~----~~~p~L~~l~~~~~~~~~~---~~~  243 (341)
                      .+.++.|+|.+..-..+....+.-..++|+.|.+..+.        ...+.    -..++|++|.+++.....+   .+.
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  109 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--------LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS  109 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--------CCccChhhccCCCCCCEEECCCCcCCcCCHHHhC
Confidence            35688888887643211100111145678888888731        11111    1357888888887655433   256


Q ss_pred             CCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-ChhHHHH
Q 047191          244 DLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-GWAVLPV  322 (341)
Q Consensus       244 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~~~~l~~  322 (341)
                      .+++|+.+++.-.....  ..    ...+..+++++.|.++.+.+..+..........+++|+.|+|..+.. ...  ..
T Consensus       110 ~l~~L~~L~L~~N~i~~--~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~  181 (361)
T 2xot_A          110 DLQALEVLLLYNNHIVV--VD----RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP--LT  181 (361)
T ss_dssp             TCTTCCEEECCSSCCCE--EC----TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC--HH
T ss_pred             CCcCCCEEECCCCcccE--EC----HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC--HH
Confidence            67778777664211110  00    34456778888888887765543211111113467888888887621 111  12


Q ss_pred             HHhcCCC--CCcEEEee
Q 047191          323 ILSSSVH--LQSLVLRK  337 (341)
Q Consensus       323 ll~~cp~--L~~L~l~~  337 (341)
                      .+...|+  |+.|.+.+
T Consensus       182 ~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             HHHHSCHHHHTTEECCS
T ss_pred             HhhhccHhhcceEEecC
Confidence            3444555  36666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.51  E-value=0.042  Score=49.55  Aligned_cols=62  Identities=16%  Similarity=0.133  Sum_probs=36.6

Q ss_pred             cCCCceEEEEecch--------hhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHh--cCCCCCcEEEee
Q 047191          274 QLNNTTSLTVSYGV--------LCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILS--SSVHLQSLVLRK  337 (341)
Q Consensus       274 ~~~~l~~L~l~~~~--------~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~--~cp~L~~L~l~~  337 (341)
                      .+++++.|.|+...        .+.+  ...-....||+|++|.+..+.........+.+  .+|+|++|+|..
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l--~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVF--RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGT--GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             cCCCCcEEEEeccccccccchhHHHH--HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            57888888875311        1111  01111125889999999987444333333333  468999999864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.45  E-value=0.0039  Score=52.03  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=63.4

Q ss_pred             cCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191          224 APSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP  300 (341)
Q Consensus       224 ~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~  300 (341)
                      .++|++|.+.+.....+   .+..+++|+.+++.-.....  ..    ...+..+++++.|.++.+.+..+.   ...+.
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~  126 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQ----HKMFKGLESLKTLMLRSNRITCVG---NDSFI  126 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC--CC----GGGGTTCSSCCEEECTTSCCCCBC---TTSST
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc--cC----HhHhcCCcCCCEEECCCCcCCeEC---HhHcC
Confidence            56677777665543322   25566777766654221111  00    455678999999999988765431   12234


Q ss_pred             CCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191          301 ALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       301 ~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .+++|++|+|..+. .+..  ...+..+++|+.|.+.+
T Consensus       127 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          127 GLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             TCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCS
T ss_pred             CCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecC
Confidence            67899999998862 1111  23466789999998875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.01  E-value=0.00049  Score=56.06  Aligned_cols=70  Identities=14%  Similarity=0.135  Sum_probs=36.5

Q ss_pred             hHHhhcCCCceEEEEecchhhhcccc-ccCCCCCCCcccEEEE--EEcCCCh---hHHHHHHhcCCCCCcEEEeee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHA-YHKWFPALSYLQHLEV--AVGAIGW---AVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~f~~L~~L~l--~~~~~~~---~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      ...+...++++.|.|+.+.+..-... -...+...++|++|+|  ..+..+.   ..+...++.++.|+.|++.+-
T Consensus        86 ~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           86 AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            33344455666666665543211000 0111223446777777  4443333   346667777788888877653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.01  E-value=0.0076  Score=50.55  Aligned_cols=125  Identities=18%  Similarity=0.106  Sum_probs=77.5

Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ  273 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~  273 (341)
                      ++|+.|.+.++.-...    .....-..++|++|.+.+.....+   .+..+++|+.+++.-.....  ..    ...+.
T Consensus        40 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~----~~~~~  109 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LP----SAVFD  109 (229)
T ss_dssp             TTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTT
T ss_pred             CCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cC----hhHhC
Confidence            6799999988421111    000011368899999987765433   25677888887764321111  10    44566


Q ss_pred             cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191          274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .+++++.|.++.+.+..+.    ..+..+++|++|++..+. ....  ...+..+++|+.|.+.+
T Consensus       110 ~l~~L~~L~Ls~N~l~~lp----~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLTELP----RGIERLTHLTHLALDQNQLKSIP--HGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             TCTTCCEEECCSSCCCSCC----TTGGGCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECTT
T ss_pred             cchhhCeEeccCCcccccC----cccccCCCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeC
Confidence            8899999999887765331    112367789999998872 1221  14567889999998865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=94.92  E-value=0.0045  Score=52.02  Aligned_cols=120  Identities=19%  Similarity=0.123  Sum_probs=67.0

Q ss_pred             CcceEEEEeeeeeeccC-C-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          124 PSVEVLKLMSDFLLKVP-A-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ++|+.|+| ++..+... + ....+++|+.|  +|.+  ++.-. ...+.++++|+.|+|.++.-..+.. ...-..++|
T Consensus        40 ~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L--~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYL-HDNQITKLEPGVFDSLINLKEL--YLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHL  114 (229)
T ss_dssp             TTCSEEEC-CSSCCCCCCTTTTTTCTTCCEE--ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCEEEc-CCCccCccCHHHhhCccCCcEE--ECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh-hHhCcchhh
Confidence            67888888 65555332 2 24467788888  7777  32211 1235677888888887764322210 001134677


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEE
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVIL  253 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l  253 (341)
                      +.|.+.++.-...    ... ....++|++|.+.+.....+   .+..+++|+.+.+
T Consensus       115 ~~L~Ls~N~l~~l----p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A          115 KELFMCCNKLTEL----PRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             CEEECCSSCCCSC----CTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CeEeccCCccccc----Ccc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            8887777311111    000 12467888888877654433   2556677776655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=94.84  E-value=0.0044  Score=55.67  Aligned_cols=80  Identities=14%  Similarity=0.128  Sum_probs=41.3

Q ss_pred             CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCCC
Q 047191          124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSST  198 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~s  198 (341)
                      +++++|+| ++..+.. ++ ...++++|++|  +|.+  +.+.-=...+.+++.|+++.+.++.... +. +...-..++
T Consensus        30 ~~l~~L~L-s~N~i~~i~~~~f~~l~~L~~L--~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~  105 (350)
T 4ay9_X           30 RNAIELRF-VLTKLRVIQKGAFSGFGDLEKI--EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPN  105 (350)
T ss_dssp             TTCSEEEE-ESCCCSEECTTSSTTCTTCCEE--EEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTT
T ss_pred             CCCCEEEc-cCCcCCCcCHHHHcCCCCCCEE--ECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccc
Confidence            46777888 5544433 32 24567778888  7766  3221111235566777766665553321 00 000113456


Q ss_pred             cceEEEeee
Q 047191          199 LKQCTLWVE  207 (341)
Q Consensus       199 L~~L~i~~c  207 (341)
                      |+.|.+.++
T Consensus       106 L~~L~l~~n  114 (350)
T 4ay9_X          106 LQYLLISNT  114 (350)
T ss_dssp             CCEEEEEEE
T ss_pred             ccccccccc
Confidence            777777763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.77  E-value=0.00046  Score=62.82  Aligned_cols=72  Identities=19%  Similarity=0.042  Sum_probs=49.2

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEcCCCh---hHHHHHHhcCCCCCcEEEeeeee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVGAIGW---AVLPVILSSSVHLQSLVLRKVII  340 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~~~~---~~l~~ll~~cp~L~~L~l~~~~~  340 (341)
                      ...+...++++.|.|+.+.+....... ...+...++|++|+|..+..+.   ..+...++.+|+|+.|++.+-.|
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            445577899999999987654321111 1122345689999999985444   45667788899999999876443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.65  E-value=0.011  Score=47.11  Aligned_cols=104  Identities=15%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCcee---ecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ  273 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~  273 (341)
                      ++|+.|.+.++.-...    ....--..++|++|.+.+.....+.   +..+++|+.+++.-.....  +.    ...+.
T Consensus        28 ~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~----~~~~~   97 (177)
T 2o6r_A           28 SSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--LP----NGVFD   97 (177)
T ss_dssp             TTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTT
T ss_pred             CCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc--cC----HHHhh
Confidence            5788888887321111    0000013578888888776544321   4566777776654221111  00    33456


Q ss_pred             cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      .+++++.|.++.+.+..+.   ...+..+++|++|++..+
T Consensus        98 ~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           98 KLTQLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred             CCcccCEEECcCCcceEeC---HHHhcCCcccCEEEecCC
Confidence            7788888888776554321   111235667888888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.58  E-value=0.024  Score=50.28  Aligned_cols=96  Identities=9%  Similarity=0.069  Sum_probs=56.2

Q ss_pred             CCCcceEEEeeecCccccccCceeEE----EecCCceEEEeecccc--CceeecCCCCee-EEEEEEEeCccccCCCccc
Q 047191          196 SSTLKQCTLWVETEGEMFTQAEYKVR----ITAPSLERLHIMSDIF--GKFVVHDLNSLT-DVILDIVYGEWSRVDPNRS  268 (341)
Q Consensus       196 ~~sL~~L~i~~c~~~~~~~~~~~~~~----~~~p~L~~l~~~~~~~--~~~~~~~~~~L~-~~~l~~~~~~~~~~~~~~~  268 (341)
                      +++|+.|++..+.        ...+.    -.+++|+++.+.+...  ....+.++++|+ .+.+.-...   ..+    
T Consensus       225 ~~~L~~l~L~~n~--------i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~---~I~----  289 (329)
T 3sb4_A          225 MPNLVSLDISKTN--------ATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVT---AIE----  289 (329)
T ss_dssp             CTTCCEEECTTBC--------CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTTCC---EEC----
T ss_pred             cCCCeEEECCCCC--------cceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcccce---EEc----
Confidence            5677777776521        11111    1267888888876421  123478888898 877742100   011    


Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEE
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLE  309 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~  309 (341)
                      ...+.++++++.+.+..+.+..+...   .+..+++|+.++
T Consensus       290 ~~aF~~c~~L~~l~l~~n~i~~I~~~---aF~~~~~L~~ly  327 (329)
T 3sb4_A          290 FGAFMGCDNLRYVLATGDKITTLGDE---LFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTTTCTTEEEEEECSSCCCEECTT---TTCTTCCCCEEE
T ss_pred             hhhhhCCccCCEEEeCCCccCccchh---hhcCCcchhhhc
Confidence            55677899999999977665544222   233566777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=94.15  E-value=0.011  Score=48.15  Aligned_cols=53  Identities=19%  Similarity=0.144  Sum_probs=27.2

Q ss_pred             eEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          127 EVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       127 ~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      +.+++ ++..+...|... +++|+.|  .|.+  ++.-.-..++...+.|+.|+|.++.
T Consensus        11 ~~l~~-s~~~l~~ip~~~-~~~l~~L--~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~   65 (192)
T 1w8a_A           11 TTVDC-TGRGLKEIPRDI-PLHTTEL--LLNDNELGRISSDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             TEEEC-TTSCCSSCCSCC-CTTCSEE--ECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred             CEEEc-CCCCcCcCccCC-CCCCCEE--ECCCCcCCccCCccccccCCCCCEEECCCCC
Confidence            45555 444444332221 2467777  6666  3322222235566777777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.03  E-value=0.042  Score=50.34  Aligned_cols=55  Identities=16%  Similarity=0.221  Sum_probs=26.1

Q ss_pred             cCCceEEEeeccccC--------ceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEec
Q 047191          224 APSLERLHIMSDIFG--------KFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSY  285 (341)
Q Consensus       224 ~p~L~~l~~~~~~~~--------~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~  285 (341)
                      +++|+++.+.+....        ...+.++++|+.+.+.-   ......    ...+.++++++.+.|..
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~----~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILG----QGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEEC----TTTTTTCCSCCEEEECT
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEh----hhhhcCCCCccEEEECc
Confidence            556666666543221        12355566666554420   000000    34455666666666643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=94.02  E-value=0.019  Score=46.72  Aligned_cols=116  Identities=14%  Similarity=0.084  Sum_probs=67.6

Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ  273 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~  273 (341)
                      ++|+.|.+.++.-..     ........++|++|.+++.....+   .+.++++|+.+++.-.....  ..    ...+.
T Consensus        31 ~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~----~~~f~   99 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IP----PRTFD   99 (193)
T ss_dssp             TTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CC----TTTTT
T ss_pred             CCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE--eC----HHHhC
Confidence            578888888731111     111112357899999887665433   25677888877664321111  00    33466


Q ss_pred             cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHhc
Q 047191          274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILSS  326 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~~  326 (341)
                      ++++++.|.++.+.+..+..   ..+..+++|+.|++..+    .....++...++.
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~  153 (193)
T 2wfh_A          100 GLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS  153 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             CCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence            78889999998876653311   12335678888888876    2334555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.46  E-value=0.045  Score=44.14  Aligned_cols=24  Identities=8%  Similarity=0.239  Sum_probs=14.7

Q ss_pred             cchHHHHHHHHhcCCCCE-EEEEEE
Q 047191           65 MPGFEDFIERVLTGTQPM-NITIFF   88 (341)
Q Consensus        65 ~~~~~~~v~~~l~~~~~i-~l~l~~   88 (341)
                      ...+.+.+.+++.....+ .+.+..
T Consensus        21 ~~~~~~~l~~~l~~~~~L~~L~L~~   45 (185)
T 1io0_A           21 STDVEETLKRIQNNDPDLEEVNLNN   45 (185)
T ss_dssp             CCCHHHHHHHHHTTCTTCCEEECTT
T ss_pred             ccHHHHHHHHHHhcCCCCCEEEecC
Confidence            344556666666666667 766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.00  E-value=0.031  Score=51.17  Aligned_cols=102  Identities=6%  Similarity=0.015  Sum_probs=48.1

Q ss_pred             CceEEEeecccc--CceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCC
Q 047191          226 SLERLHIMSDIF--GKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALS  303 (341)
Q Consensus       226 ~L~~l~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~  303 (341)
                      +|+++.+.....  ....+.++++|+.+.+.-........... ....+.++++++.+.+... ++.+.   ...+..+.
T Consensus       249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~~-i~~I~---~~aF~~c~  323 (401)
T 4fdw_A          249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPES-IRILG---QGLLGGNR  323 (401)
T ss_dssp             CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCTT-CCEEC---TTTTTTCC
T ss_pred             CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCCc-eEEEh---hhhhcCCC
Confidence            455555533221  12235666777766653211100000000 0445566777777776532 22221   11223456


Q ss_pred             cccEEEEEEc--CCChhHHHHHHhcCCCCCcEEEee
Q 047191          304 YLQHLEVAVG--AIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       304 ~L~~L~l~~~--~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      +|+.+.|...  ..+.    .-+..| +|+.+.+.+
T Consensus       324 ~L~~l~lp~~l~~I~~----~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          324 KVTQLTIPANVTQINF----SAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             SCCEEEECTTCCEECT----TSSSSS-CCCEEEECC
T ss_pred             CccEEEECccccEEcH----HhCCCC-CCCEEEEcC
Confidence            7888777433  1111    235677 888888865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=92.70  E-value=0.014  Score=56.17  Aligned_cols=117  Identities=17%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcce
Q 047191          124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQ  201 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~  201 (341)
                      ..|+.|+| ++..+...|....+++|+.|  +|.+  ++  .+-.-+.++++|+.|+|.++.-.+++  .+ -..++|+.
T Consensus       441 ~~L~~L~L-s~n~l~~lp~~~~l~~L~~L--~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l-~~l~~L~~  512 (567)
T 1dce_A          441 ADVRVLHL-AHKDLTVLCHLEQLLLVTHL--DLSHNRLR--ALPPALAALRCLEVLQASDNALENVD--GV-ANLPRLQE  512 (567)
T ss_dssp             TTCSEEEC-TTSCCSSCCCGGGGTTCCEE--ECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG--GG-TTCSSCCE
T ss_pred             cCceEEEe-cCCCCCCCcCccccccCcEe--ecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc--cc-CCCCCCcE
Confidence            35888999 76666554456678889999  8887  44  33334778899999999887543322  11 13467888


Q ss_pred             EEEeeecCccccccCceeEEEecCCceEEEeeccccCce------eecCCCCeeEE
Q 047191          202 CTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF------VVHDLNSLTDV  251 (341)
Q Consensus       202 L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~------~~~~~~~L~~~  251 (341)
                      |.+.++.-.+.   .........++|+.|.+++......      ....+|+|+.+
T Consensus       513 L~Ls~N~l~~~---~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          513 LLLCNNRLQQS---AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             EECCSSCCCSS---STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EECCCCCCCCC---CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            88887421111   0011112478899999987654321      12346777655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=92.50  E-value=0.012  Score=58.44  Aligned_cols=108  Identities=14%  Similarity=0.019  Sum_probs=56.9

Q ss_pred             cccccccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV  193 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~  193 (341)
                      |..+.....|+.|+| ++..+.. +.....+++|+.|  .|.+  ++  .+-.-+.++++|+.|+|.++.-..+.  .--
T Consensus       217 ~~~~~~l~~L~~L~L-s~n~l~~l~~~~~~l~~L~~L--~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~~~  289 (727)
T 4b8c_D          217 KDSKYDDQLWHALDL-SNLQIFNISANIFKYDFLTRL--YLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLP--AEL  289 (727)
T ss_dssp             -----CCCCCCEEEC-TTSCCSCCCGGGGGCCSCSCC--BCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCC--SSG
T ss_pred             hhhhccCCCCcEEEC-CCCCCCCCChhhcCCCCCCEE--EeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccC--hhh
Confidence            334455677788888 6554433 3234467778888  7777  44  22233567778888888776543222  111


Q ss_pred             EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccc
Q 047191          194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDI  236 (341)
Q Consensus       194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~  236 (341)
                      -..++|+.|.+.+|.-...    ... ....++|+.|.+++..
T Consensus       290 ~~l~~L~~L~L~~N~l~~l----p~~-~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVTTL----PWE-FGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             GGGTTCSEEECCSSCCCCC----CSS-TTSCTTCCCEECTTSC
T ss_pred             cCCCCCCEEECCCCCCCcc----Chh-hhcCCCccEEeCCCCc
Confidence            2345677777776311110    011 1235677777776544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=92.43  E-value=0.029  Score=45.53  Aligned_cols=105  Identities=12%  Similarity=0.090  Sum_probs=60.2

Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ  273 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~  273 (341)
                      ++|+.|.+.++.-...   ......-..++|++|.+++......   .+..+++|+.+++.-.......      ...+.
T Consensus        29 ~~l~~L~l~~n~i~~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~   99 (192)
T 1w8a_A           29 LHTTELLLNDNELGRI---SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS------NKMFL   99 (192)
T ss_dssp             TTCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC------SSSST
T ss_pred             CCCCEEECCCCcCCcc---CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC------HHHhc
Confidence            3788888887311111   0001112467888988887655433   3567777887766432111100      23355


Q ss_pred             cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      ++++++.|.++.+.+..+.   ...+..+++|++|++..+
T Consensus       100 ~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          100 GLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTC
T ss_pred             CCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCC
Confidence            6788888888877654331   122335678888888776

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=90.48  E-value=0.23  Score=40.15  Aligned_cols=14  Identities=14%  Similarity=0.299  Sum_probs=6.6

Q ss_pred             hcCCCceEEEEecc
Q 047191          273 QQLNNTTSLTVSYG  286 (341)
Q Consensus       273 ~~~~~l~~L~l~~~  286 (341)
                      ..+++++.|.+..+
T Consensus       123 ~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          123 NDLSALSHLAIGAN  136 (193)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             hcCccccEEEeCCC
Confidence            34444555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=90.27  E-value=0.056  Score=42.95  Aligned_cols=104  Identities=16%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             CcceEEEEeeeeeeccCC-C-cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          124 PSVEVLKLMSDFLLKVPA-G-GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~-~-~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ++|++|++ ++..+...+ . ...+++|++|  .|.+  ++. .....+.+++.|+.|++.++.-.+... ...-..++|
T Consensus        28 ~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLEL-ESNKLQSLPHGVFDKLTQLTKL--SLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQL  102 (177)
T ss_dssp             TTCSEEEC-CSSCCCCCCTTTTTTCTTCSEE--ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCcEEEe-CCCcccEeCHHHhcCcccccEE--ECCCCcceE-eChhHccCCCccCEEECCCCCccccCH-HHhhCCccc
Confidence            57888888 655554332 2 3457888888  8877  332 112235678888888888774332220 001134678


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccc
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDI  236 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~  236 (341)
                      +.|.+.++.-...    .....-..++|++|.+.+..
T Consensus       103 ~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          103 KELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECcCCcceEe----CHHHhcCCcccCEEEecCCC
Confidence            8888877321111    01111135788999887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=89.30  E-value=0.25  Score=38.99  Aligned_cols=96  Identities=19%  Similarity=0.165  Sum_probs=54.5

Q ss_pred             CCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCC
Q 047191          225 PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPA  301 (341)
Q Consensus       225 p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  301 (341)
                      ++|++|.+++.....+   .+..+++|+.+++.-.....  ..    ...+..+++++.|.++.+.+..+..   ..+..
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~----~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~  100 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LP----AGVFDKLTQLTQLSLNDNQLKSIPR---GAFDN  100 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CC----TTTTTTCTTCCEEECCSSCCCCCCT---TTTTT
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cC----hhhccCCCCCCEEECCCCccCEeCH---HHhcC
Confidence            5566666665543322   24556666666553211111  00    4445678899999998876653311   12346


Q ss_pred             CCcccEEEEEEc--CC---ChhHHHHHHhcCCC
Q 047191          302 LSYLQHLEVAVG--AI---GWAVLPVILSSSVH  329 (341)
Q Consensus       302 f~~L~~L~l~~~--~~---~~~~l~~ll~~cp~  329 (341)
                      +++|++|+|..+  ..   +..++...++.-+.
T Consensus       101 l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~  133 (170)
T 3g39_A          101 LKSLTHIWLLNNPWDCACSDILYLSRWISQHPG  133 (170)
T ss_dssp             CTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred             CCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence            778999999887  11   34555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=88.33  E-value=0.049  Score=44.27  Aligned_cols=82  Identities=12%  Similarity=0.015  Sum_probs=58.3

Q ss_pred             cccccccCcceEEEEeeeeeeccCCCc-ccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE-
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVPAGG-TCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF-  192 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l-  192 (341)
                      | .+..+++|+.|++ +++.+...+.. ..+++|+.|  +|.+  ++.  +. -+..+++|+.|++.++.-....  .+ 
T Consensus        64 ~-~~~~l~~L~~L~l-~~n~l~~l~~~~~~~~~L~~L--~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~--~~~  134 (198)
T 1ds9_A           64 S-SLSGMENLRILSL-GRNLIKKIENLDAVADTLEEL--WISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWG--EID  134 (198)
T ss_dssp             C-CHHHHTTCCEEEE-EEEEECSCSSHHHHHHHCSEE--EEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHH--HHH
T ss_pred             c-ccccCCCCCEEEC-CCCCcccccchhhcCCcCCEE--ECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchh--HHH
Confidence            5 5566899999999 77777654333 346899999  9988  554  33 3778999999999998654222  10 


Q ss_pred             -EEeCCCcceEEEeee
Q 047191          193 -VISSSTLKQCTLWVE  207 (341)
Q Consensus       193 -~i~~~sL~~L~i~~c  207 (341)
                       --..++|+.|.+.++
T Consensus       135 ~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          135 KLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHTTTTTCSEEEECSC
T ss_pred             HHhcCCCCCEEEecCC
Confidence             114578999999884

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.23  E-value=0.72  Score=41.66  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=32.2

Q ss_pred             cccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEee
Q 047191          119 ELYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQA  181 (341)
Q Consensus       119 ~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~  181 (341)
                      ++..|.+|+.+.+ ......... ...++++|+.+  .+.. ++.-. ...+.+|+.|+.+.+..
T Consensus       157 aF~~c~~L~~i~l-~~~~~~I~~~~F~~c~~L~~i--~l~~~~~~I~-~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          157 AFATCESLEYVSL-PDSMETLHNGLFSGCGKLKSI--KLPRNLKIIR-DYCFAECILLENMEFPN  217 (394)
T ss_dssp             TTTTCTTCCEEEC-CTTCCEECTTTTTTCTTCCBC--CCCTTCCEEC-TTTTTTCTTCCBCCCCT
T ss_pred             hhcccCCCcEEec-CCccceeccccccCCCCceEE--EcCCCceEeC-chhhccccccceeecCC
Confidence            3445788888888 432211111 34456778888  7765 22111 12256677777776543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=87.21  E-value=0.041  Score=54.50  Aligned_cols=84  Identities=15%  Similarity=0.075  Sum_probs=57.6

Q ss_pred             cccccccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV  193 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~  193 (341)
                      |..++.+++|++|+| ++..+.. +.....+++|+.|  +|.+  ++  .+-.-+.++++|+.|.|.++.-..+.  .--
T Consensus       240 ~~~~~~l~~L~~L~L-s~N~l~~lp~~~~~l~~L~~L--~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~lp--~~~  312 (727)
T 4b8c_D          240 SANIFKYDFLTRLYL-NGNSLTELPAEIKNLSNLRVL--DLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLP--WEF  312 (727)
T ss_dssp             CGGGGGCCSCSCCBC-TTSCCSCCCGGGGGGTTCCEE--ECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCCCC--SST
T ss_pred             ChhhcCCCCCCEEEe-eCCcCcccChhhhCCCCCCEE--eCcCCcCC--ccChhhcCCCCCCEEECCCCCCCccC--hhh
Confidence            677788899999999 6655543 3245578999999  8888  44  23233677899999999888543322  111


Q ss_pred             EeCCCcceEEEeee
Q 047191          194 ISSSTLKQCTLWVE  207 (341)
Q Consensus       194 i~~~sL~~L~i~~c  207 (341)
                      -..++|+.|.+.++
T Consensus       313 ~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          313 GNLCNLQFLGVEGN  326 (727)
T ss_dssp             TSCTTCCCEECTTS
T ss_pred             hcCCCccEEeCCCC
Confidence            13467888888874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=87.14  E-value=0.51  Score=37.33  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=45.1

Q ss_pred             CCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCC
Q 047191          225 PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPA  301 (341)
Q Consensus       225 p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  301 (341)
                      ++|++|.+++......   .+..+++|+.+++.-.....  +.    ...+..+++++.|.++.+.+..+..   ..+..
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~----~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~  103 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IP----TGVFDKLTQLTQLDLNDNHLKSIPR---GAFDN  103 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTTTCTTCCEEECCSSCCCCCCT---TTTTT
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cC----hhHhCCcchhhEEECCCCccceeCH---HHhcc
Confidence            5566666655443322   24555666665553211110  00    3445678889999998876653311   12335


Q ss_pred             CCcccEEEEEEc
Q 047191          302 LSYLQHLEVAVG  313 (341)
Q Consensus       302 f~~L~~L~l~~~  313 (341)
                      +++|++|++..+
T Consensus       104 l~~L~~L~L~~N  115 (174)
T 2r9u_A          104 LKSLTHIYLYNN  115 (174)
T ss_dssp             CTTCSEEECCSS
T ss_pred             ccCCCEEEeCCC
Confidence            778999998887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=86.83  E-value=0.4  Score=41.06  Aligned_cols=62  Identities=18%  Similarity=0.067  Sum_probs=42.4

Q ss_pred             HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCC------hhHHHHHHhcCCCCCcEE
Q 047191          270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIG------WAVLPVILSSSVHLQSLV  334 (341)
Q Consensus       270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~------~~~l~~ll~~cp~L~~L~  334 (341)
                      .++..+++++.|.|+.+.+..+.  .+..+..+ +|++|.|..+...      ......++..+|+|+.|+
T Consensus       190 ~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          190 SIVQKAPNLKILNLSGNELKSER--ELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             THHHHSTTCCEEECTTSCCCSGG--GGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hHHhhCCCCCEEECCCCccCCch--hhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            45678899999999988765442  12222234 7999999887211      134457899999999886

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=85.71  E-value=0.15  Score=45.18  Aligned_cols=84  Identities=12%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             cccccccCcceEEEEeee-eeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCcee
Q 047191          117 QIELYASPSVEVLKLMSD-FLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTK  191 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~-~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~  191 (341)
                      |. +....+|+.|+| ++ ..+.. ++ ...++++|+.|  +|.+  ++.- ....+.++++|+.|+|.+..-..+.  .
T Consensus        25 p~-l~~~~~L~~L~l-~~~n~l~~~~~~~~~~l~~L~~L--~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~--~   97 (347)
T 2ifg_A           25 HH-LPGAENLTELYI-ENQQHLQHLELRDLRGLGELRNL--TIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESLS--W   97 (347)
T ss_dssp             TT-SCSCSCCSEEEC-CSCSSCCEECGGGSCSCCCCSEE--ECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCCC--S
T ss_pred             CC-CCCCCCeeEEEc-cCCCCCCCcChhHhccccCCCEE--ECCCCcccee-CHHHhcCCcCCCEEeCCCCccceeC--H
Confidence            66 666788999999 63 44433 32 24568889999  8888  3331 1223567889999998886433222  1


Q ss_pred             EEEeCCCcceEEEeee
Q 047191          192 FVISSSTLKQCTLWVE  207 (341)
Q Consensus       192 l~i~~~sL~~L~i~~c  207 (341)
                      -.....+|+.|.+.++
T Consensus        98 ~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGN  113 (347)
T ss_dssp             TTTCSCCCCEEECCSS
T ss_pred             HHcccCCceEEEeeCC
Confidence            0111223788888763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=83.87  E-value=0.35  Score=38.30  Aligned_cols=84  Identities=14%  Similarity=0.079  Sum_probs=52.0

Q ss_pred             cccccccCcceEEEEeeeeeeccC-C-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKVP-A-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF  192 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l  192 (341)
                      |..+.  ++|+.|+| ++..+... + ...++++|+.|  +|.+  ++.- -..++.++++|+.|+|.+..-..+.. ..
T Consensus        28 P~~~~--~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L--~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~-~~  100 (174)
T 2r9u_A           28 PAGIP--TDKQRLWL-NNNQITKLEPGVFDHLVNLQQL--YFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPR-GA  100 (174)
T ss_dssp             CSCCC--TTCSEEEC-CSSCCCCCCTTTTTTCTTCCEE--ECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred             CCCcC--CCCcEEEe-CCCCccccCHHHhcCCcCCCEE--ECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCH-HH
Confidence            44443  77899999 65555432 2 34568899999  8888  3321 11235678999999998864332220 00


Q ss_pred             EEeCCCcceEEEeee
Q 047191          193 VISSSTLKQCTLWVE  207 (341)
Q Consensus       193 ~i~~~sL~~L~i~~c  207 (341)
                      .-..++|+.|.+.++
T Consensus       101 ~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTTCTTCSEEECCSS
T ss_pred             hccccCCCEEEeCCC
Confidence            112467888988874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=83.46  E-value=5.1  Score=35.94  Aligned_cols=12  Identities=0%  Similarity=0.224  Sum_probs=7.2

Q ss_pred             ccccCcceEEEE
Q 047191          120 LYASPSVEVLKL  131 (341)
Q Consensus       120 ~~~~~~L~~L~L  131 (341)
                      ++.|..|+.+.+
T Consensus       133 F~~c~~L~~i~l  144 (394)
T 4gt6_A          133 FHHCEELDTVTI  144 (394)
T ss_dssp             TTTCTTCCEEEC
T ss_pred             hhhhcccccccc
Confidence            344666666666

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=83.41  E-value=0.37  Score=37.94  Aligned_cols=84  Identities=17%  Similarity=0.103  Sum_probs=52.5

Q ss_pred             cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191          117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF  192 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l  192 (341)
                      |..+.  ++|+.|+| ++..+.. ++ ...++++|++|  +|.+  ++. .-...+.+.++|+.|+|.+..-..+.. ..
T Consensus        25 p~~~~--~~l~~L~L-~~N~i~~~~~~~~~~l~~L~~L--~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~   97 (170)
T 3g39_A           25 PTGIP--TTTQVLYL-YDNQITKLEPGVFDRLTQLTRL--DLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPR-GA   97 (170)
T ss_dssp             CSCCC--TTCSEEEC-CSSCCCCCCTTTTTTCTTCSEE--ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred             CccCC--CCCcEEEc-CCCcCCccChhhhcCcccCCEE--ECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCH-HH
Confidence            44443  67899999 6555543 22 34568899999  8888  432 112335778999999998874432220 01


Q ss_pred             EEeCCCcceEEEeee
Q 047191          193 VISSSTLKQCTLWVE  207 (341)
Q Consensus       193 ~i~~~sL~~L~i~~c  207 (341)
                      .-..++|+.|.+.+.
T Consensus        98 ~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           98 FDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hcCCCCCCEEEeCCC
Confidence            113468889988873

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=82.32  E-value=0.64  Score=39.80  Aligned_cols=55  Identities=20%  Similarity=0.187  Sum_probs=29.4

Q ss_pred             cccCcceEEEEeeeeeeccCCCcccCC--chhhhhhhccC--CCc------chHHHHHhcCCccceeE
Q 047191          121 YASPSVEVLKLMSDFLLKVPAGGTCFP--NVKILTMQLES--PDN------ILTEKLFCSCPSLEELS  178 (341)
Q Consensus       121 ~~~~~L~~L~L~~~~~l~~~~~~~~~~--~L~~L~~~L~~--~~~------~~l~~ll~~cp~Le~L~  178 (341)
                      ..+++|+.|+| ++-.+........+.  +|+.|  .|.+  +..      .....++..+|+|+.|+
T Consensus       193 ~~l~~L~~L~L-s~N~i~~~~~l~~l~~l~L~~L--~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          193 QKAPNLKILNL-SGNELKSERELDKIKGLKLEEL--WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHSTTCCEEEC-TTSCCCSGGGGGGGTTSCCSEE--ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhCCCCCEEEC-CCCccCCchhhhhcccCCcceE--EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            34677777777 544333221122222  66666  6666  332      33456666777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	3e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.002

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 6  RINALPDSVLCHILSYLPTKNVVATSILARRWK 38
           I+ LP  +  ++LS+L  K+++  +   R W+
Sbjct: 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWR 50

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 8/41 (19%), Positives = 20/41 (48%)

Query: 7  INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQKL 47
          I +LP  +   I +YL  ++++ +  +++ W  +      L
Sbjct: 6  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 8  NALPDSVLCHILSYLPTKNVVATSILARRWK 38
          ++LPD +L  I S L    ++  S + +RW 
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWY 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.85
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.77
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.51
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.39
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.24
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.2
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.7
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.52
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.27
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.1
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.03
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.99
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.98
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.85
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.22
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.11
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	93.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	93.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.47
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	93.01
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	92.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	88.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	86.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	86.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	81.42
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	81.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	80.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	80.17

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.9e-11  Score=71.70  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=32.4

Q ss_pred             CCCChHHHHHHHcCCChhhhhhhhccccchHHhh
Q 047191            8 NALPDSVLCHILSYLPTKNVVATSILARRWKLVW   41 (341)
Q Consensus         8 s~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw   41 (341)
                      +.||+|++.+||++||.+|+++++.|||+|+++-
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.4e-11  Score=103.55  Aligned_cols=59  Identities=22%  Similarity=0.124  Sum_probs=38.0

Q ss_pred             hHHhhcCCCceEEEEecc-hhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCC
Q 047191          269 IQLLQQLNNTTSLTVSYG-VLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQ  331 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~-~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~  331 (341)
                      ...+..+++++.|.++.. .+..   .....+..+++|+.|++..+ ..+..+..+.++||+|+
T Consensus       193 ~~~l~~~~~L~~L~L~~C~~i~~---~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         193 FQEFFQLNYLQHLSLSRCYDIIP---ETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             hhhhcccCcCCEEECCCCCCCCh---HHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            344556788888888752 2211   11122345778999988665 55667778888899886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.1e-11  Score=103.72  Aligned_cols=66  Identities=27%  Similarity=0.251  Sum_probs=46.9

Q ss_pred             hHHhhcCCCceEEEEecch-hhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191          269 IQLLQQLNNTTSLTVSYGV-LCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      ..+...+++++.|.++... +..   .....+..+++|++|++..| ..+..++.. +..||+|+.|++.+.
T Consensus       168 ~~l~~~~~~L~~L~L~~~~~itd---~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         168 STLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccCCCc---hhhhhhcccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            5567889999999997632 211   11222336789999999987 666666555 577999999998764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.7e-09  Score=78.19  Aligned_cols=38  Identities=24%  Similarity=0.495  Sum_probs=35.9

Q ss_pred             CCCccCCCChHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191            3 PAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLV   40 (341)
Q Consensus         3 ~~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l   40 (341)
                      ..|.|+.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999965

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=7.6e-10  Score=79.74  Aligned_cols=40  Identities=18%  Similarity=0.390  Sum_probs=36.9

Q ss_pred             CCccCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc
Q 047191            4 AYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS   43 (341)
Q Consensus         4 ~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~   43 (341)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5889999999999999999999999999999999976543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=1.5e-08  Score=84.12  Aligned_cols=184  Identities=13%  Similarity=0.093  Sum_probs=118.1

Q ss_pred             cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191          123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK  200 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~  200 (341)
                      ..+|+.|.+ .++.+....+...+++|++|  .+.+  +++-  .. +..++.|+.|.+.++....+.  .+. ..++|+
T Consensus        40 l~~L~~L~l-~~~~i~~l~~l~~l~~L~~L--~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~~~~i~--~l~-~l~~L~  110 (227)
T d1h6ua2          40 LDGITTLSA-FGTGVTTIEGVQYLNNLIGL--ELKDNQITDL--AP-LKNLTKITELELSGNPLKNVS--AIA-GLQSIK  110 (227)
T ss_dssp             HHTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCG--GGT-TCTTCC
T ss_pred             cCCcCEEEC-CCCCCCcchhHhcCCCCcEe--ecCCceeecc--cc-ccccccccccccccccccccc--ccc-cccccc
Confidence            567899999 87777665456678999999  8888  4432  11 688999999999887554332  221 456788


Q ss_pred             eEEEeeecCccccccCceeEEEecCCceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCce
Q 047191          201 QCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTT  279 (341)
Q Consensus       201 ~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~  279 (341)
                      .+.+..|.....     . -....+.+..+.+.+..... ..+..+++|+.+.+.-.....        ..-+.++++++
T Consensus       111 ~l~l~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--------~~~l~~l~~L~  176 (227)
T d1h6ua2         111 TLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--------LTPLANLSKLT  176 (227)
T ss_dssp             EEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--------CGGGTTCTTCC
T ss_pred             cccccccccccc-----c-hhccccchhhhhchhhhhchhhhhcccccccccccccccccc--------chhhcccccce
Confidence            888876422111     0 01235677777776654432 235677788877653221111        23367889999


Q ss_pred             EEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .|.++.+.+..+  .   .+..+++|++|+|..+...  .+. -++.+|+|+.|.|++
T Consensus       177 ~L~Ls~n~l~~l--~---~l~~l~~L~~L~Ls~N~lt--~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         177 TLKADDNKISDI--S---PLASLPNLIEVHLKNNQIS--DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECCSSCCCCC--G---GGGGCTTCCEEECTTSCCC--BCG-GGTTCTTCCEEEEEE
T ss_pred             ecccCCCccCCC--h---hhcCCCCCCEEECcCCcCC--CCc-ccccCCCCCEEEeeC
Confidence            999987654322  1   1336779999999887222  122 278999999999875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.1e-08  Score=73.31  Aligned_cols=38  Identities=37%  Similarity=0.604  Sum_probs=35.0

Q ss_pred             CCCccCCCC----hHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191            3 PAYRINALP----DSVLCHILSYLPTKNVVATSILARRWKLV   40 (341)
Q Consensus         3 ~~d~is~LP----d~iL~~Ils~Lp~~~~~~~s~vskrWr~l   40 (341)
                      ..|.|+.||    |||+.+|||||+.+|+++++.|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            468899999    59999999999999999999999999865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.24  E-value=8.3e-07  Score=72.34  Aligned_cols=162  Identities=19%  Similarity=0.152  Sum_probs=87.7

Q ss_pred             cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191          123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK  200 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~  200 (341)
                      ..+|+.|.+ .++.+...++...+++|++|  +|.+  +++  +.. ++.+++|+.|.+.++.-..+.  .+ -..++|+
T Consensus        45 L~~L~~L~l-~~~~i~~l~~l~~l~~L~~L--~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~i~~l~--~l-~~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIA-NNSDIKSVQGIQYLPNVTKL--FLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLS--SL-KDLKKLK  115 (210)
T ss_dssp             HHTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGG--GG-TTCTTCC
T ss_pred             hcCccEEEC-cCCCCCCchhHhhCCCCCEE--eCCCccccC--ccc-cccCccccccccccccccccc--cc-ccccccc
Confidence            456788888 77766655455668888888  8877  443  222 467788888888776432211  10 0124455


Q ss_pred             eEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCce
Q 047191          201 QCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTT  279 (341)
Q Consensus       201 ~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~  279 (341)
                      .|.+..                            .....+ .+..+++++...+.......        ......+++++
T Consensus       116 ~L~l~~----------------------------~~~~~~~~l~~l~~l~~l~~~~n~l~~--------~~~~~~l~~L~  159 (210)
T d1h6ta2         116 SLSLEH----------------------------NGISDINGLVHLPQLESLYLGNNKITD--------ITVLSRLTKLD  159 (210)
T ss_dssp             EEECTT----------------------------SCCCCCGGGGGCTTCCEEECCSSCCCC--------CGGGGGCTTCS
T ss_pred             cccccc----------------------------ccccccccccccccccccccccccccc--------ccccccccccc
Confidence            555544                            222111 12333444433322110000        22344667777


Q ss_pred             EEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      .+.++.+.+..+  .   .+..+++|++|++..+...  .+. -+..+|+|+.|+|.+
T Consensus       160 ~l~l~~n~l~~i--~---~l~~l~~L~~L~Ls~N~i~--~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         160 TLSLEDNQISDI--V---PLAGLTKLQNLYLSKNHIS--DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCCC--G---GGTTCTTCCEEECCSSCCC--BCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc--c---cccCCCCCCEEECCCCCCC--CCh-hhcCCCCCCEEEccC
Confidence            777776644322  1   1235678888888776221  122 267788888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.20  E-value=5.8e-07  Score=72.63  Aligned_cols=159  Identities=18%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191          123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK  200 (341)
Q Consensus       123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~  200 (341)
                      .+++++|.+ .++.+....+...+++|++|  +|.+  +++-.  . +.++|+|+.|.+.++......  .+. ..++|+
T Consensus        39 l~~l~~L~l-~~~~i~~l~~l~~l~nL~~L--~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~  109 (199)
T d2omxa2          39 LDQVTTLQA-DRLGIKSIDGVEYLNNLTQI--NFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADIT--PLA-NLTNLT  109 (199)
T ss_dssp             HTTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG--GGT-TCTTCS
T ss_pred             hcCCCEEEC-CCCCCCCccccccCCCcCcC--ccccccccCcc--c-ccCCccccccccccccccccc--ccc-cccccc
Confidence            567888888 77666555455568888888  8888  44321  1 678888888888887554322  211 335566


Q ss_pred             eEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceE
Q 047191          201 QCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTS  280 (341)
Q Consensus       201 ~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~  280 (341)
                      .|.+..|.....  ..    ....++|+.+.+++.....                             ...+..+++++.
T Consensus       110 ~L~l~~~~~~~~--~~----~~~l~~L~~L~l~~n~l~~-----------------------------~~~l~~~~~L~~  154 (199)
T d2omxa2         110 GLTLFNNQITDI--DP----LKNLTNLNRLELSSNTISD-----------------------------ISALSGLTSLQQ  154 (199)
T ss_dssp             EEECCSSCCCCC--GG----GTTCTTCSEEECCSSCCCC-----------------------------CGGGTTCTTCSE
T ss_pred             cccccccccccc--cc----cchhhhhHHhhhhhhhhcc-----------------------------cccccccccccc
Confidence            666665321111  00    0124556665554432211                             112445566666


Q ss_pred             EEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcE
Q 047191          281 LTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSL  333 (341)
Q Consensus       281 L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L  333 (341)
                      |.+..+.+.-+     ..+..+++|++|++..+....  +. .+..+++||+|
T Consensus       155 L~l~~n~l~~l-----~~l~~l~~L~~L~ls~N~i~~--i~-~l~~L~~L~~L  199 (199)
T d2omxa2         155 LNFSSNQVTDL-----KPLANLTTLERLDISSNKVSD--IS-VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCCCC-----GGGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCSEE
T ss_pred             cccccccccCC-----ccccCCCCCCEEECCCCCCCC--Cc-cccCCCCCCcC
Confidence            66665533221     112356677787777662211  11 25677777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.84  E-value=2.3e-06  Score=70.44  Aligned_cols=165  Identities=15%  Similarity=0.097  Sum_probs=109.4

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|+.|++ ++..+........+++|+.+  .+..  +++  +.. ++.++.|+.|.+.+|......  . ....+
T Consensus        59 l~~l~~L~~L~l-s~n~i~~~~~l~~l~~l~~l--~~~~n~~~~--i~~-l~~l~~L~~l~l~~~~~~~~~--~-~~~~~  129 (227)
T d1h6ua2          59 VQYLNNLIGLEL-KDNQITDLAPLKNLTKITEL--ELSGNPLKN--VSA-IAGLQSIKTLDLTSTQITDVT--P-LAGLS  129 (227)
T ss_dssp             GGGCTTCCEEEC-CSSCCCCCGGGTTCCSCCEE--ECCSCCCSC--CGG-GTTCTTCCEEECTTSCCCCCG--G-GTTCT
T ss_pred             HhcCCCCcEeec-CCceeecccccccccccccc--ccccccccc--ccc-ccccccccccccccccccccc--h-hcccc
Confidence            456899999999 76666554356778999999  8887  332  222 678999999999888654322  1 12345


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      .++.+.+..|.....      .-...+++|++|.+.+..... ..+..+++|+++++.-..     +.   ....+.+++
T Consensus       130 ~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~-----l~---~l~~l~~l~  195 (227)
T d1h6ua2         130 NLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-----IS---DISPLASLP  195 (227)
T ss_dssp             TCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-----CC---CCGGGGGCT
T ss_pred             chhhhhchhhhhchh------hhhccccccccccccccccccchhhcccccceecccCCCc-----cC---CChhhcCCC
Confidence            677777766421111      011347889999998776543 346788999988874321     11   133367899


Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV  312 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~  312 (341)
                      +++.|.++.+.+.-+  .   .+..+++|+.|+|+.
T Consensus       196 ~L~~L~Ls~N~lt~i--~---~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNNQISDV--S---PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTSCCCBC--G---GGTTCTTCCEEEEEE
T ss_pred             CCCEEECcCCcCCCC--c---ccccCCCCCEEEeeC
Confidence            999999998754322  1   233778999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.78  E-value=4.2e-06  Score=73.93  Aligned_cols=185  Identities=14%  Similarity=0.123  Sum_probs=104.7

Q ss_pred             cccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191          121 YASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST  198 (341)
Q Consensus       121 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s  198 (341)
                      ..++.++.+.+ .+..+...+.....++|++|  ++.+  +++-  . -+..++.|+.|.+.++.-.+..  .+ -..++
T Consensus       194 ~~l~~~~~l~l-~~n~i~~~~~~~~~~~L~~L--~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~--~~-~~~~~  264 (384)
T d2omza2         194 AKLTNLESLIA-TNNQISDITPLGILTNLDEL--SLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLA--PL-SGLTK  264 (384)
T ss_dssp             GGCTTCSEEEC-CSSCCCCCGGGGGCTTCCEE--ECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCG--GG-TTCTT
T ss_pred             ccccccceeec-cCCccCCCCcccccCCCCEE--ECCCCCCCCc--c-hhhcccccchhccccCccCCCC--cc-ccccc
Confidence            34567777777 55544433234456777888  7776  3332  1 2566788888887776543222  11 12356


Q ss_pred             cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCC
Q 047191          199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNN  277 (341)
Q Consensus       199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  277 (341)
                      |+.|.+..+.-.+.     .. ....+.++.+...+.....+ .+..+++++..++......        ...-+..+++
T Consensus       265 L~~L~l~~~~l~~~-----~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~--------~l~~l~~l~~  330 (384)
T d2omza2         265 LTELKLGANQISNI-----SP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS--------DISPVSSLTK  330 (384)
T ss_dssp             CSEEECCSSCCCCC-----GG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS--------CCGGGGGCTT
T ss_pred             CCEeeccCcccCCC-----Cc-cccccccccccccccccccccccchhcccCeEECCCCCCC--------CCcccccCCC
Confidence            77777766311110     00 11245566666655443322 2556666666554321111        1223678899


Q ss_pred             ceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191          278 TTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       278 l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ++.|.++.+.+..+.     .+..+++|++|+++.+. .+..   . ++++|+|+.|+|++
T Consensus       331 L~~L~L~~n~l~~l~-----~l~~l~~L~~L~l~~N~l~~l~---~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         331 LQRLFFANNKVSDVS-----SLANLTNINWLSAGHNQISDLT---P-LANLTRITQLGLND  382 (384)
T ss_dssp             CCEEECCSSCCCCCG-----GGGGCTTCCEEECCSSCCCBCG---G-GTTCTTCSEEECCC
T ss_pred             CCEEECCCCCCCCCh-----hHcCCCCCCEEECCCCcCCCCh---h-hccCCCCCEeeCCC
Confidence            999999887654321     23357789999998762 2222   2 68889999998864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.70  E-value=1.5e-05  Score=64.57  Aligned_cols=144  Identities=18%  Similarity=0.140  Sum_probs=86.0

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|++|+| ++..+...+....+++|+.|  .+.+  +++  +.. +.++|+|+.|.+.++......  .+ ...+
T Consensus        64 l~~l~~L~~L~L-~~n~i~~l~~~~~l~~L~~L--~l~~n~i~~--l~~-l~~l~~L~~L~l~~~~~~~~~--~l-~~l~  134 (210)
T d1h6ta2          64 IQYLPNVTKLFL-NGNKLTDIKPLANLKNLGWL--FLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDIN--GL-VHLP  134 (210)
T ss_dssp             GGGCTTCCEEEC-CSSCCCCCGGGTTCTTCCEE--ECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCG--GG-GGCT
T ss_pred             HhhCCCCCEEeC-CCccccCccccccCcccccc--ccccccccc--ccc-ccccccccccccccccccccc--cc-cccc
Confidence            455889999999 87777655455678999999  9988  554  332 778999999999988654322  11 1234


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCC
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNN  277 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  277 (341)
                      +++.+.+..+.-...      ...-..++|+++.+.+.....                             ..-+..+++
T Consensus       135 ~l~~l~~~~n~l~~~------~~~~~l~~L~~l~l~~n~l~~-----------------------------i~~l~~l~~  179 (210)
T d1h6ta2         135 QLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD-----------------------------IVPLAGLTK  179 (210)
T ss_dssp             TCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCC-----------------------------CGGGTTCTT
T ss_pred             ccccccccccccccc------ccccccccccccccccccccc-----------------------------cccccCCCC
Confidence            566666555210000      000124555555554432211                             112456778


Q ss_pred             ceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191          278 TTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV  312 (341)
Q Consensus       278 l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~  312 (341)
                      ++.|.++.+.+.-+     ..+..+++|++|+|..
T Consensus       180 L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHISDL-----RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCBC-----GGGTTCTTCSEEEEEE
T ss_pred             CCEEECCCCCCCCC-----hhhcCCCCCCEEEccC
Confidence            88888877654322     1234677888888863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.62  E-value=2.8e-06  Score=73.02  Aligned_cols=65  Identities=14%  Similarity=0.096  Sum_probs=34.6

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC---CChh--HHHHHHhcCCCCCcEEEee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA---IGWA--VLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~---~~~~--~l~~ll~~cp~L~~L~l~~  337 (341)
                      ...+.++++++.|.++++.+..+.    ..+..+++|+.|+++.+.   .+..  .........++|+.|.+.+
T Consensus       212 ~~~~~~l~~L~~L~L~~N~L~~lp----~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         212 NGSLANTPHLRELHLNNNKLVKVP----GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             TTTGGGSTTCCEEECCSSCCSSCC----TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             cccccccccceeeecccccccccc----cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCC
Confidence            344556677777777766543221    123456677777777651   1111  1122344556777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=8.9e-06  Score=63.15  Aligned_cols=63  Identities=17%  Similarity=0.120  Sum_probs=35.8

Q ss_pred             HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-C-hhHHHHHHhcCCCCCcEEE
Q 047191          271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-G-WAVLPVILSSSVHLQSLVL  335 (341)
Q Consensus       271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~-~~~l~~ll~~cp~L~~L~l  335 (341)
                      +...+++++.|.++.+.+..+.  ....+..+++|++|++..+.. . ...-..++..+|+|+.|+-
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~--~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELG--DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGG--GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccccceeccccccccc--cccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            3456677777777766544321  111223566788888877611 1 1222346777888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.52  E-value=1e-05  Score=65.02  Aligned_cols=101  Identities=11%  Similarity=0.047  Sum_probs=67.2

Q ss_pred             ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191          120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS  197 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~  197 (341)
                      +..+++|++|++ +++.+...+...++++|++|  .+..  +..  +.. +++++.|+.|.+.++......  .+ -..+
T Consensus        58 l~~l~nL~~L~L-s~N~l~~~~~l~~l~~L~~L--~l~~n~~~~--~~~-l~~l~~L~~L~l~~~~~~~~~--~~-~~l~  128 (199)
T d2omxa2          58 VEYLNNLTQINF-SNNQLTDITPLKNLTKLVDI--LMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDID--PL-KNLT  128 (199)
T ss_dssp             GGGCTTCCEEEC-CSSCCCCCGGGTTCTTCCEE--ECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCG--GG-TTCT
T ss_pred             cccCCCcCcCcc-ccccccCcccccCCcccccc--ccccccccc--ccc-ccccccccccccccccccccc--cc-chhh
Confidence            445789999999 77777655456778999999  9988  322  222 678999999999988654322  11 1347


Q ss_pred             CcceEEEeeecCccccccCceeEEEecCCceEEEeecc
Q 047191          198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSD  235 (341)
Q Consensus       198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~  235 (341)
                      +|+.|.+.++.-..     ... ....++|++|.+.+.
T Consensus       129 ~L~~L~l~~n~l~~-----~~~-l~~~~~L~~L~l~~n  160 (199)
T d2omxa2         129 NLNRLELSSNTISD-----ISA-LSGLTSLQQLNFSSN  160 (199)
T ss_dssp             TCSEEECCSSCCCC-----CGG-GTTCTTCSEEECCSS
T ss_pred             hhHHhhhhhhhhcc-----ccc-ccccccccccccccc
Confidence            89999988741111     010 113677888877664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=8.8e-06  Score=68.50  Aligned_cols=180  Identities=14%  Similarity=0.080  Sum_probs=98.4

Q ss_pred             CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191          124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL  199 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL  199 (341)
                      ++|++|+| ++..+.. ++ ...++++|+.|  .|.+  ++.-  .. .+..|+|+.|+|.++.-....  ...-..++|
T Consensus        31 ~~l~~L~L-s~N~i~~l~~~~f~~l~~L~~L--~L~~N~l~~l--~~-~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHL-SENLLYTFSLATLMPYTRLTQL--NLDRAELTKL--QV-DGTLPVLGTLDLSHNQLQSLP--LLGQTLPAL  102 (266)
T ss_dssp             TTCCEEEC-TTSCCSEEEGGGGTTCTTCCEE--ECTTSCCCEE--EC-CSCCTTCCEEECCSSCCSSCC--CCTTTCTTC
T ss_pred             cCCCEEEC-cCCcCCCcCHHHhhcccccccc--cccccccccc--cc-ccccccccccccccccccccc--ccccccccc
Confidence            46778888 5444422 21 24467778888  7777  4421  11 356788888888776432222  111233567


Q ss_pred             ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191          200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN  276 (341)
Q Consensus       200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~  276 (341)
                      +.|.+..+.....    ........++++++.+.+.....+   .+..+++++.+.+.-.....  +.    ...+..++
T Consensus       103 ~~L~l~~~~~~~~----~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~--~~----~~~~~~l~  172 (266)
T d1p9ag_         103 TVLDVSFNRLTSL----PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LP----AGLLNGLE  172 (266)
T ss_dssp             CEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC--CC----TTTTTTCT
T ss_pred             cccccccccccee----eccccccccccccccccccccceeccccccccccchhcccccccccc--cC----cccccccc
Confidence            7777776322111    011112346677777766543322   24455666665543211110  10    44567889


Q ss_pred             CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHh
Q 047191          277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILS  325 (341)
Q Consensus       277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~  325 (341)
                      +++.|.++.+.++.+.    ..+..+++|+.|.|..+    .....++..+++
T Consensus       173 ~L~~L~Ls~N~L~~lp----~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         173 NLDTLLLQENSLYTIP----KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             TCCEEECCSSCCCCCC----TTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             ccceeecccCCCcccC----hhHCCCCCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            9999999988765431    12335678999999876    223445555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.46  E-value=1.8e-05  Score=69.70  Aligned_cols=164  Identities=16%  Similarity=0.106  Sum_probs=107.1

Q ss_pred             cccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191          121 YASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST  198 (341)
Q Consensus       121 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s  198 (341)
                      ..+++|+.|++ .++.+..++....+++|+.|  .+.+  +++-.  . +..+|+|+.|.+.++.-.+..  . ....+.
T Consensus       216 ~~~~~L~~L~l-~~n~l~~~~~l~~l~~L~~L--~l~~n~l~~~~--~-~~~~~~L~~L~l~~~~l~~~~--~-~~~~~~  286 (384)
T d2omza2         216 GILTNLDELSL-NGNQLKDIGTLASLTNLTDL--DLANNQISNLA--P-LSGLTKLTELKLGANQISNIS--P-LAGLTA  286 (384)
T ss_dssp             GGCTTCCEEEC-CSSCCCCCGGGGGCTTCSEE--ECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCCG--G-GTTCTT
T ss_pred             cccCCCCEEEC-CCCCCCCcchhhcccccchh--ccccCccCCCC--c-ccccccCCEeeccCcccCCCC--c-cccccc
Confidence            34689999999 87777666556678999999  9888  44321  2 778999999999887543322  1 112345


Q ss_pred             cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCC
Q 047191          199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNN  277 (341)
Q Consensus       199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  277 (341)
                      ++.+.+..+.-..     .. -....++++.+.+++...... .+..+++|+++++.-..-..        ...+..+++
T Consensus       287 l~~l~~~~n~l~~-----~~-~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~--------l~~l~~l~~  352 (384)
T d2omza2         287 LTNLELNENQLED-----IS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--------VSSLANLTN  352 (384)
T ss_dssp             CSEEECCSSCCSC-----CG-GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC--------CGGGGGCTT
T ss_pred             ccccccccccccc-----cc-ccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC--------ChhHcCCCC
Confidence            6666666531111     01 123467889999887655443 36788999998775321111        224678999


Q ss_pred             ceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191          278 TTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV  312 (341)
Q Consensus       278 l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~  312 (341)
                      ++.|.++.+.+.-+  ..   +..+++|+.|+|+.
T Consensus       353 L~~L~l~~N~l~~l--~~---l~~l~~L~~L~L~~  382 (384)
T d2omza2         353 INWLSAGHNQISDL--TP---LANLTRITQLGLND  382 (384)
T ss_dssp             CCEEECCSSCCCBC--GG---GTTCTTCSEEECCC
T ss_pred             CCEEECCCCcCCCC--hh---hccCCCCCEeeCCC
Confidence            99999998765432  11   33677999998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=1.4e-05  Score=67.24  Aligned_cols=167  Identities=16%  Similarity=0.123  Sum_probs=102.9

Q ss_pred             CchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEE--eCCCcceEEEeeecCccccccCceeEEE
Q 047191          147 PNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVI--SSSTLKQCTLWVETEGEMFTQAEYKVRI  222 (341)
Q Consensus       147 ~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i--~~~sL~~L~i~~c~~~~~~~~~~~~~~~  222 (341)
                      ++|++|  +|.+  ++.-.- ..+.++++|+.|.|.++.-   .  .+..  ..++|+.|.+..+.-..     ......
T Consensus        31 ~~l~~L--~Ls~N~i~~l~~-~~f~~l~~L~~L~L~~N~l---~--~l~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~   97 (266)
T d1p9ag_          31 KDTTIL--HLSENLLYTFSL-ATLMPYTRLTQLNLDRAEL---T--KLQVDGTLPVLGTLDLSHNQLQS-----LPLLGQ   97 (266)
T ss_dssp             TTCCEE--ECTTSCCSEEEG-GGGTTCTTCCEEECTTSCC---C--EEECCSCCTTCCEEECCSSCCSS-----CCCCTT
T ss_pred             cCCCEE--ECcCCcCCCcCH-HHhhccccccccccccccc---c--ccccccccccccccccccccccc-----cccccc
Confidence            689999  9998  544222 2367899999999998743   2  2221  34789999998842111     111222


Q ss_pred             ecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCC
Q 047191          223 TAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWF  299 (341)
Q Consensus       223 ~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~  299 (341)
                      ..|+|+.+.+++......   .+..++++..+.+......  .+.    ......+++++.|.++.+.+..+.   ...+
T Consensus        98 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~--~l~----~~~~~~l~~l~~l~l~~N~l~~~~---~~~~  168 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK--TLP----PGLLTPTPKLEKLSLANNNLTELP---AGLL  168 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC--CCC----TTTTTTCTTCCEEECTTSCCSCCC---TTTT
T ss_pred             cccccccccccccccceeeccccccccccccccccccccc--eec----cccccccccchhcccccccccccC---cccc
Confidence            468899999987654332   2455666776655321111  111    455667899999999987655331   1223


Q ss_pred             CCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          300 PALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       300 ~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..+++|++|+|..+...  .+..-+-..++|+.|.+.+
T Consensus       169 ~~l~~L~~L~Ls~N~L~--~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         169 NGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             TTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCS
T ss_pred             ccccccceeecccCCCc--ccChhHCCCCCCCEEEecC
Confidence            46789999999887211  1111122468899988865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=3e-05  Score=65.66  Aligned_cols=16  Identities=19%  Similarity=0.191  Sum_probs=9.3

Q ss_pred             HhcCCccceeEEeeee
Q 047191          168 FCSCPSLEELSIQAYL  183 (341)
Q Consensus       168 l~~cp~Le~L~L~~c~  183 (341)
                      ++++++|+.|.+.++.
T Consensus       101 ~~~l~~L~~L~l~~n~  116 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCG  116 (284)
T ss_dssp             TTTCTTCCEEECTTSC
T ss_pred             hcccccCCEEecCCcc
Confidence            4456666666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.03  E-value=3.1e-05  Score=66.56  Aligned_cols=62  Identities=13%  Similarity=0.176  Sum_probs=30.2

Q ss_pred             cccccccCcceEEEEeeee-ee--ccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191          117 QIELYASPSVEVLKLMSDF-LL--KVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY  182 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~-~l--~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c  182 (341)
                      |..+...+.|++|+| +++ .+  ..|+...++++|++|  +|.+  +.. .....+..++.|+.+.+.++
T Consensus        69 p~~l~~L~~L~~L~L-s~~N~l~g~iP~~i~~L~~L~~L--~Ls~N~l~~-~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          69 PSSLANLPYLNFLYI-GGINNLVGPIPPAIAKLTQLHYL--YITHTNVSG-AIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             CGGGGGCTTCSEEEE-EEETTEESCCCGGGGGCTTCSEE--EEEEECCEE-ECCGGGGGCTTCCEEECCSS
T ss_pred             ChHHhcCcccccccc-ccccccccccccccccccccchh--hhccccccc-cccccccchhhhcccccccc
Confidence            445555666666666 432 22  223234456666666  6655  221 11122445566666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=4.2e-05  Score=59.16  Aligned_cols=56  Identities=13%  Similarity=0.195  Sum_probs=29.9

Q ss_pred             ccCcceEEEEeeeeeeccCCC-cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          122 ASPSVEVLKLMSDFLLKVPAG-GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       122 ~~~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      .+.+|+.|+| ++..+...+. ..++++|+.|  +|.+  ++.-  .. ++.+|+|+.|.+.++.
T Consensus        16 n~~~lr~L~L-~~n~I~~i~~~~~~l~~L~~L--~Ls~N~i~~l--~~-~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          16 NAVRDRELDL-RGYKIPVIENLGATLDQFDAI--DFSDNEIRKL--DG-FPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             CTTSCEEEEC-TTSCCCSCCCGGGGTTCCSEE--ECCSSCCCEE--CC-CCCCSSCCEEECCSSC
T ss_pred             CcCcCcEEEC-CCCCCCccCccccccccCCEE--ECCCCCCCcc--CC-cccCcchhhhhccccc
Confidence            3456777777 5555543322 2345666666  6666  3321  11 4556666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.98  E-value=1.1e-05  Score=70.39  Aligned_cols=213  Identities=14%  Similarity=0.078  Sum_probs=116.4

Q ss_pred             cccCcceEEEEeeeeeeccC------CCcccCCchhhhhhhccC-----CC---cc---hHHHHHhcCCccceeEEeeee
Q 047191          121 YASPSVEVLKLMSDFLLKVP------AGGTCFPNVKILTMQLES-----PD---NI---LTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       121 ~~~~~L~~L~L~~~~~l~~~------~~~~~~~~L~~L~~~L~~-----~~---~~---~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      ..+.+|+.|+| ++..+...      ......++|+.|  .+..     ..   ..   .+...+..|+.|+.|+|.+|.
T Consensus        28 ~~~~~l~~L~L-s~n~i~~~~~~~l~~~l~~~~~L~~l--~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          28 LEDDSVKEIVL-SGNTIGTEAARWLSENIASKKDLEIA--EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHCSCCCEEEC-TTSEECHHHHHHHHHTTTTCTTCCEE--ECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             hhCCCCCEEEC-cCCcCCHHHHHHHHHHHHhCCCCCEE--ECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            34688999999 65554221      023346888999  8875     11   12   244556789999999999985


Q ss_pred             cCCCCceeE---EEeCCCcceEEEeeecCcccc----ccCc-----eeEEEecCCceEEEeeccccCce-------eecC
Q 047191          184 NDEGPTTKF---VISSSTLKQCTLWVETEGEMF----TQAE-----YKVRITAPSLERLHIMSDIFGKF-------VVHD  244 (341)
Q Consensus       184 ~~~~~~~~l---~i~~~sL~~L~i~~c~~~~~~----~~~~-----~~~~~~~p~L~~l~~~~~~~~~~-------~~~~  244 (341)
                      -.......+   -...++|+.|.+..|.-....    ....     .......+.|+.+.+.+.....-       .+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            432110011   114678999999874210000    0000     01112367788888876543211       1345


Q ss_pred             CCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEcCCChh---H
Q 047191          245 LNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVGAIGWA---V  319 (341)
Q Consensus       245 ~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~~~~~---~  319 (341)
                      .++++++.+.........+  ... ...+..+++++.|.++.+.+....... ...++..++|++|+|..+..+..   .
T Consensus       185 ~~~L~~L~L~~n~i~~~g~--~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGI--EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHH--HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhccccccccccccccc--ccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            6777777663221110000  001 334567788899988876542211111 11233567888998887744443   4


Q ss_pred             HHHHHhcC--CCCCcEEEeee
Q 047191          320 LPVILSSS--VHLQSLVLRKV  338 (341)
Q Consensus       320 l~~ll~~c--p~L~~L~l~~~  338 (341)
                      +...++.+  +.|++|++.+-
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHhhhccCCCCCEEECCCC
Confidence            44445544  56888887653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.92  E-value=0.00016  Score=61.55  Aligned_cols=83  Identities=7%  Similarity=0.004  Sum_probs=43.5

Q ss_pred             cCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccc---cC
Q 047191          224 APSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAY---HK  297 (341)
Q Consensus       224 ~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~---~~  297 (341)
                      .+.+++|.+++......   .+..+++|+++++.-..     +...  ..-+..+++++.|.++.+.++.+....   ..
T Consensus       194 ~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-----L~~l--p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~  266 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-----LVKV--PGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  266 (305)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-----CSSC--CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             cccccccccccccccccccccccccccceeeeccccc-----cccc--ccccccccCCCEEECCCCccCccChhhccCcc
Confidence            35566666655433322   24555667666553211     1100  123556788888888877665543211   12


Q ss_pred             CCCCCCcccEEEEEEc
Q 047191          298 WFPALSYLQHLEVAVG  313 (341)
Q Consensus       298 ~~~~f~~L~~L~l~~~  313 (341)
                      .....++|+.|.|..+
T Consensus       267 ~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         267 YNTKKASYSGVSLFSN  282 (305)
T ss_dssp             CCTTSCCCSEEECCSS
T ss_pred             hhcccCCCCEEECCCC
Confidence            2335567778877765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.67  E-value=5e-05  Score=60.80  Aligned_cols=14  Identities=14%  Similarity=0.105  Sum_probs=9.2

Q ss_pred             HHHHhcCCCCCcEE
Q 047191          321 PVILSSSVHLQSLV  334 (341)
Q Consensus       321 ~~ll~~cp~L~~L~  334 (341)
                      ..++..+|+|+.|+
T Consensus       167 ~~vi~~lp~L~~LD  180 (198)
T d1m9la_         167 IEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHCSSCCEES
T ss_pred             HHHHHHCCCcCEeC
Confidence            34567777777764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00022  Score=60.14  Aligned_cols=200  Identities=18%  Similarity=0.109  Sum_probs=112.3

Q ss_pred             cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCcee
Q 047191          117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTK  191 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~  191 (341)
                      |..+.  +++++|+| ++..+.. ++ ...++++|+.|  .+..  +..-. .....+++.++.+.+....... +. +.
T Consensus        27 P~~ip--~~~~~L~L-s~N~i~~i~~~~f~~l~~L~~L--~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~-~~   99 (284)
T d1ozna_          27 PVGIP--AASQRIFL-HGNRISHVPAASFRACRNLTIL--WLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVD-PA   99 (284)
T ss_dssp             CTTCC--TTCSEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCC-TT
T ss_pred             CCCCC--CCCCEEEC-cCCcCCCCCHHHhhcccccccc--ccccccccccc-ccccccccccccccccccccccccc-ch
Confidence            44443  45789999 6555533 32 35568889999  8877  33322 2335678888888776543321 00 00


Q ss_pred             EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccc
Q 047191          192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRS  268 (341)
Q Consensus       192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~  268 (341)
                      ..-..++|+.|.+..+.....    ........++|+.+.+.+.....+   .+.+.++|+.+.+.-....  ...    
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~--~l~----  169 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVP----  169 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--EEC----
T ss_pred             hhcccccCCEEecCCcccccc----cccccchhcccchhhhccccccccChhHhccccchhhcccccCccc--ccc----
Confidence            011236788888887421111    111112356788888877654332   2556677877655321111  000    


Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ...+.++++++.+.++.+.+..+.   ...+..+++|++|++..+.... .....+..+++|+.|.+.+
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~---~~~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVH---PHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCS
T ss_pred             hhhhccccccchhhhhhccccccC---hhHhhhhhhccccccccccccc-ccccccccccccCEEEecC
Confidence            445567888888888876554321   1223456788888887762211 1124567788888888765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.36  E-value=4.1e-05  Score=66.71  Aligned_cols=208  Identities=14%  Similarity=0.026  Sum_probs=113.3

Q ss_pred             cccCcceEEEEeeeeeeccCC------------CcccCCchhhhhhhccC--CCcch---HHHHHhcCCccceeEEeeee
Q 047191          121 YASPSVEVLKLMSDFLLKVPA------------GGTCFPNVKILTMQLES--PDNIL---TEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       121 ~~~~~L~~L~L~~~~~l~~~~------------~~~~~~~L~~L~~~L~~--~~~~~---l~~ll~~cp~Le~L~L~~c~  183 (341)
                      ...++|+.|++ .++......            ....+++|+.|  +|..  +++..   +...+..++.|+.|.+.+|.
T Consensus        56 ~~~~~L~~l~l-~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L--~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          56 ASKKDLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTV--RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TTCTTCCEEEC-CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE--ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HhCCCCCEEEC-CCCcccccccccchHHHHHHHHHhhCCCcccc--cccccccccccccchhhhhcccccchheeccccc
Confidence            34577788887 543321110            11235778888  8877  55554   44446678888888888773


Q ss_pred             cCC---------CCc---eeEEEeCCCcceEEEeeecCcccc-ccCceeEEEecCCceEEEeeccccCc--------eee
Q 047191          184 NDE---------GPT---TKFVISSSTLKQCTLWVETEGEMF-TQAEYKVRITAPSLERLHIMSDIFGK--------FVV  242 (341)
Q Consensus       184 ~~~---------~~~---~~l~i~~~sL~~L~i~~c~~~~~~-~~~~~~~~~~~p~L~~l~~~~~~~~~--------~~~  242 (341)
                      -..         +..   .......++|+.+.+..+. .... ........-..+.|++|.+.+.....        ..+
T Consensus       133 l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l  211 (344)
T d2ca6a1         133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL  211 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG
T ss_pred             ccccccccccccccccccccccccCcccceeeccccc-ccccccccccchhhhhhhhcccccccccccccccccchhhhh
Confidence            210         000   0001134567777776521 1110 00011111235778888887654321        024


Q ss_pred             cCCCCeeEEEEEEEeCccccCCCcc--c-hHHhhcCCCceEEEEecchhhhccccc-cCCC--CCCCcccEEEEEEcCCC
Q 047191          243 HDLNSLTDVILDIVYGEWSRVDPNR--S-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWF--PALSYLQHLEVAVGAIG  316 (341)
Q Consensus       243 ~~~~~L~~~~l~~~~~~~~~~~~~~--~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~--~~f~~L~~L~l~~~~~~  316 (341)
                      ...++|+.+++...     .+....  . ...+..+++++.|.++.+.+....... ...+  ...+.|++|+++.+..+
T Consensus       212 ~~~~~L~~L~Ls~N-----~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         212 AYCQELKVLDLQDN-----TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGCTTCCEEECCSS-----CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cchhhhcccccccc-----cccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            56678887765321     111110  1 466788899999999876543211000 1111  13467999999988554


Q ss_pred             hh---HHHHHHh-cCCCCCcEEEee
Q 047191          317 WA---VLPVILS-SSVHLQSLVLRK  337 (341)
Q Consensus       317 ~~---~l~~ll~-~cp~L~~L~l~~  337 (341)
                      ..   .+...++ .+|+|+.|+|.+
T Consensus       287 ~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         287 LDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             hHHHHHHHHHHHccCCCCCEEECCC
Confidence            44   4555554 689999999865

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.00099  Score=48.56  Aligned_cols=79  Identities=20%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             ccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE--EE
Q 047191          120 LYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF--VI  194 (341)
Q Consensus       120 ~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l--~i  194 (341)
                      +..+..|++|++ ++..+...| ....+++|++|  .+.+  ++.-  .. +..+|+|+.|.+.+..-....  .+  --
T Consensus        16 l~~l~~L~~L~l-s~N~l~~lp~~~~~l~~L~~L--~l~~N~i~~l--~~-~~~l~~L~~L~l~~N~i~~~~--~~~~l~   87 (124)
T d1dcea3          16 LEQLLLVTHLDL-SHNRLRALPPALAALRCLEVL--QASDNALENV--DG-VANLPRLQELLLCNNRLQQSA--AIQPLV   87 (124)
T ss_dssp             GGGGTTCCEEEC-CSSCCCCCCGGGGGCTTCCEE--ECCSSCCCCC--GG-GTTCSSCCEEECCSSCCCSSS--TTGGGG
T ss_pred             cccCCCCCEEEC-CCCccCcchhhhhhhhccccc--cccccccccc--Cc-cccccccCeEECCCCccCCCC--Cchhhc
Confidence            455778899999 655554433 45568889999  8888  4432  22 678899999999887433222  11  12


Q ss_pred             eCCCcceEEEee
Q 047191          195 SSSTLKQCTLWV  206 (341)
Q Consensus       195 ~~~sL~~L~i~~  206 (341)
                      ..++|+.|++.+
T Consensus        88 ~~~~L~~L~l~~   99 (124)
T d1dcea3          88 SCPRLVLLNLQG   99 (124)
T ss_dssp             GCTTCCEEECTT
T ss_pred             CCCCCCEEECCC
Confidence            457888888877

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0062  Score=49.24  Aligned_cols=36  Identities=14%  Similarity=-0.003  Sum_probs=19.4

Q ss_pred             CCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEee
Q 047191          300 PALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       300 ~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..+++|+.|+|..+.. ...  ...++++++|+.|.+.+
T Consensus       198 ~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         198 HGASGPVILDISRTRIHSLP--SYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTSCCCSEEECTTSCCCCCC--SSSCTTCCEEESSSEES
T ss_pred             cCCCCCCEEECCCCcCCccC--HHHHcCCcccccCcCCC
Confidence            3567788888866511 111  12256666666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.60  E-value=0.0017  Score=47.23  Aligned_cols=60  Identities=10%  Similarity=0.010  Sum_probs=34.0

Q ss_pred             hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-C-hhHHHHHHhcCCCCCcE
Q 047191          272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-G-WAVLPVILSSSVHLQSL  333 (341)
Q Consensus       272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~-~~~l~~ll~~cp~L~~L  333 (341)
                      +..+++++.|.++.+.+..+.  ....+..+++|+.|++..+.. . ......+.+..|+|+.|
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~--~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cccccccCeEECCCCccCCCC--CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            456677777777766544321  111223566777887776511 1 12234566777888766

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0053  Score=49.69  Aligned_cols=22  Identities=9%  Similarity=0.116  Sum_probs=17.2

Q ss_pred             hHHhhcCCCceEEEEecchhhh
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCA  290 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~  290 (341)
                      ...++++++++.|.++.+.+..
T Consensus       194 ~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         194 NDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             TTTTTTSCCCSEEECTTSCCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCCc
Confidence            4457889999999998876553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.22  E-value=0.00085  Score=51.70  Aligned_cols=69  Identities=12%  Similarity=0.052  Sum_probs=40.8

Q ss_pred             hHHhhcCCCceEEEEecchhhhcccc-ccCCCCCCCcccEEEEEEc---CCC---hhHHHHHHhcCCCCCcEEEee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHA-YHKWFPALSYLQHLEVAVG---AIG---WAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~f~~L~~L~l~~~---~~~---~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ...+...+.++.|.++.+.+..-... -.+.+..-+.|++|++..+   ..+   ...+...++..+.|++|.++.
T Consensus        65 a~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          65 IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            45555667777777766544321111 1122334557888888765   222   345777888889998887754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.11  E-value=0.00081  Score=51.69  Aligned_cols=69  Identities=16%  Similarity=0.149  Sum_probs=36.1

Q ss_pred             hHHhhcCCCceEEEEecchhhhcc-ccccCCCCCCCcccEEEEEEc--CCCh---hHHHHHHhcCCCCCcEEEee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALD-HAYHKWFPALSYLQHLEVAVG--AIGW---AVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~f~~L~~L~l~~~--~~~~---~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ...+...+.++.+.+....+..-. ..-...+...++|++++|..+  ..+.   ..+...++.+++|++|.++.
T Consensus        67 ~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          67 AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            334444555555555543321100 000112234556777777654  3333   45777788888888887753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.84  E-value=0.0057  Score=47.84  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=21.8

Q ss_pred             CchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeec
Q 047191          147 PNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLN  184 (341)
Q Consensus       147 ~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~  184 (341)
                      +++++|  .|.+  ++...-...+.+.++|+.|.|.+..-
T Consensus        29 ~~l~~L--~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i   66 (192)
T d1w8aa_          29 LHTTEL--LLNDNELGRISSDGLFGRLPHLVKLELKRNQL   66 (192)
T ss_dssp             TTCSEE--ECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC
T ss_pred             CCCCEE--EeCCCCCcccccccccCCCceEeeeecccccc
Confidence            567777  7777  44322233356677777777766543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=93.74  E-value=0.0037  Score=49.40  Aligned_cols=57  Identities=21%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             CCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191          275 LNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       275 ~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      +++++.|.++.+.+..+.     .+..+++|+.|++..+ -.++.. ...++.+|+|+.|.+.+
T Consensus        92 ~~~L~~L~l~~N~i~~l~-----~~~~l~~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_          92 ADTLEELWISYNQIASLS-----GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHHCCEEECSEEECCCHH-----HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECS
T ss_pred             cccccccccccccccccc-----cccccccccccccccchhccccc-cccccCCCccceeecCC
Confidence            446677777665443221     1224567888888776 223333 23467788888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.0025  Score=56.50  Aligned_cols=68  Identities=19%  Similarity=0.161  Sum_probs=32.3

Q ss_pred             HHhhcCCCceEEEEecchhhhccccc-cCCCC-CCCcccEEEEEEcCC---ChhHHHHHHhcCCCCCcEEEee
Q 047191          270 QLLQQLNNTTSLTVSYGVLCALDHAY-HKWFP-ALSYLQHLEVAVGAI---GWAVLPVILSSSVHLQSLVLRK  337 (341)
Q Consensus       270 ~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~-~f~~L~~L~l~~~~~---~~~~l~~ll~~cp~L~~L~l~~  337 (341)
                      ..++.+++++.|.++.+.+.-..... ...+. ...+|++|++..+..   +...+...++.+++|+.|.+.+
T Consensus        49 ~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1          49 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             HHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccc
Confidence            34455666666666554332110000 11111 123566666665522   2334455566667777666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=93.01  E-value=0.0041  Score=52.66  Aligned_cols=64  Identities=8%  Similarity=-0.026  Sum_probs=44.8

Q ss_pred             cccccccCcceEEEEeeeeeec-cCC-CcccCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEeeee
Q 047191          117 QIELYASPSVEVLKLMSDFLLK-VPA-GGTCFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~~l~-~~~-~~~~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      |..+...++|++|+| ++..+. .++ ....+++|+.+  .+.. .....+..-+.+++.|+.+.+.++.
T Consensus        94 P~~i~~L~~L~~L~L-s~N~l~~~~~~~~~~~~~L~~l--~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          94 PPAIAKLTQLHYLYI-THTNVSGAIPDFLSQIKTLVTL--DFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             CGGGGGCTTCSEEEE-EEECCEEECCGGGGGCTTCCEE--ECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccchhhh-ccccccccccccccchhhhccc--ccccccccccCchhhccCcccceeeccccc
Confidence            778888999999999 765543 332 34567888888  8877 2222222336789999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.61  E-value=0.019  Score=44.67  Aligned_cols=105  Identities=12%  Similarity=0.108  Sum_probs=59.0

Q ss_pred             CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191          197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ  273 (341)
Q Consensus       197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~  273 (341)
                      ++++.|.++...-...   .....-...++|+.|.+.+......   .+..+++|+.+++.-.....  ..    ...+.
T Consensus        29 ~~l~~L~Ls~N~i~~~---~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~--l~----~~~F~   99 (192)
T d1w8aa_          29 LHTTELLLNDNELGRI---SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--IS----NKMFL   99 (192)
T ss_dssp             TTCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE--EC----SSSST
T ss_pred             CCCCEEEeCCCCCccc---ccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc--cC----HHHHh
Confidence            5688888887211010   0011112367888888876554322   35566777776653221111  11    33456


Q ss_pred             cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191          274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG  313 (341)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~  313 (341)
                      ++++++.|.|+.+.++.+..   ..+..+++|++|+|..+
T Consensus       100 ~l~~L~~L~L~~N~l~~i~~---~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         100 GLHQLKTLNLYDNQISCVMP---GSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECT---TSSTTCTTCCEEECTTC
T ss_pred             CCCcccccccCCccccccCH---HHhcCCccccccccccc
Confidence            78888888888877654421   12335667888888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.058  Score=40.31  Aligned_cols=63  Identities=13%  Similarity=0.092  Sum_probs=28.6

Q ss_pred             cccccccCcceEEEEeeee-eeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191          117 QIELYASPSVEVLKLMSDF-LLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL  183 (341)
Q Consensus       117 p~~~~~~~~L~~L~L~~~~-~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~  183 (341)
                      |..+...++|++|++ .+. .+...+  .+.++++|+.|  +|.+  ++.-. ...+.+.++|+.|.|.+..
T Consensus        24 p~~l~~l~~l~~L~l-~~n~~l~~i~~~~f~~l~~L~~L--~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          24 LHHLPGAENLTELYI-ENQQHLQHLELRDLRGLGELRNL--TIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             TTTSCSCSCCSEEEC-CSCSSCCEECGGGSCSCCCCSEE--ECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             cccccCccccCeeec-CCCccccccCchhhccccccCcc--eeeccccCCcc-cccccccccccceeccCCC
Confidence            344444556666666 322 222111  23445566666  5555  22211 1124445666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.44  E-value=0.022  Score=43.03  Aligned_cols=63  Identities=16%  Similarity=0.013  Sum_probs=42.9

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC------ChhHHHHHHhcCCCCCcEE
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI------GWAVLPVILSSSVHLQSLV  334 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~------~~~~l~~ll~~cp~L~~L~  334 (341)
                      ...++.+++++.|.++.+.++.+......   ...+|++|.+..+..      .......+++.+|+|+.|+
T Consensus        84 ~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l---~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          84 SSIVQKAPNLKILNLSGNELKSERELDKI---KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             GTHHHHSTTCCCCCCTTSCCCCGGGHHHH---TTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHHHhhCCcccccccccCccccchhhhhh---hccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            44567889999999998876654321111   234688888887611      2346677899999999875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.25  E-value=0.23  Score=37.10  Aligned_cols=110  Identities=9%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             HHHHHHHHhcCCCCE-EEEEEEeecCCCchhHHHHHHHHhcc--cccccccc----c-------ccccccCcceEEEEee
Q 047191           68 FEDFIERVLTGTQPM-NITIFFMHCSKLLGVMLGRLNYILTR--ITALSCLC----Q-------IELYASPSVEVLKLMS  133 (341)
Q Consensus        68 ~~~~v~~~l~~~~~i-~l~l~~~~~~~~~~~~~~wl~~~~~~--l~~L~~~~----p-------~~~~~~~~L~~L~L~~  133 (341)
                      ..+.+.++....+.+ .+.+.- .....++.+..+.......  +++|+..+    +       ..+..+.+++.+.+ +
T Consensus         5 i~~~l~~~~~~~~~L~~L~L~~-~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l-~   82 (166)
T d1io0a_           5 VEETLKRIQNNDPDLEEVNLNN-IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV-E   82 (166)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTT-CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC-C
T ss_pred             HHHHHHHHHhcCCCCcEEEcCC-CCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhh-c
Confidence            344445554455566 666543 2233344444444443333  55553222    0       01122455666666 4


Q ss_pred             eeeeccC------CCcccCCchhhhhhhcc--C--CCcch---HHHHHhcCCccceeEEee
Q 047191          134 DFLLKVP------AGGTCFPNVKILTMQLE--S--PDNIL---TEKLFCSCPSLEELSIQA  181 (341)
Q Consensus       134 ~~~l~~~------~~~~~~~~L~~L~~~L~--~--~~~~~---l~~ll~~cp~Le~L~L~~  181 (341)
                      ++.+...      ......++|+.+  +|.  .  +++++   +..++..|+.|++|.+.+
T Consensus        83 ~~~~~~~g~~~l~~~l~~~~~L~~l--~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          83 SNFISGSGILALVEALQSNTSLIEL--RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEE--ECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cccccchhHHHHHHHHHhCccccEE--eeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            4433211      012234555554  333  2  44433   333344666666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.42  E-value=0.09  Score=39.66  Aligned_cols=70  Identities=9%  Similarity=0.021  Sum_probs=45.9

Q ss_pred             hHHhhcCCCceEEEEecchhhhcc-ccccCCCCCCCcccEEEEEEcCCCh---hHHHHHHhcCCCCCcEEEeee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALD-HAYHKWFPALSYLQHLEVAVGAIGW---AVLPVILSSSVHLQSLVLRKV  338 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~f~~L~~L~l~~~~~~~---~~l~~ll~~cp~L~~L~l~~~  338 (341)
                      ...+...++++.|.++.+.+..-. ..-...++..+.|++|+|..+..+.   ..+...++.++.|++|.+.+-
T Consensus        37 ~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          37 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            445666688899998876553211 1111122345689999999885544   455666888899999999753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=81.42  E-value=0.48  Score=39.29  Aligned_cols=69  Identities=23%  Similarity=0.147  Sum_probs=36.9

Q ss_pred             CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcC-CccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191          124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSC-PSLEELSIQAYLNDEGPTTKFVISSSTLK  200 (341)
Q Consensus       124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~c-p~Le~L~L~~c~~~~~~~~~l~i~~~sL~  200 (341)
                      ++|++|.| ++..+...|.  .+.+|+.|  .+.+  ++.  +    ... +.|+.|++.++.-..++  .. ...++|+
T Consensus        58 ~~L~~L~L-s~N~l~~lp~--~~~~L~~L--~l~~n~l~~--l----~~lp~~L~~L~L~~n~l~~lp--~~-~~l~~L~  123 (353)
T d1jl5a_          58 PHLESLVA-SCNSLTELPE--LPQSLKSL--LVDNNNLKA--L----SDLPPLLEYLGVSNNQLEKLP--EL-QNSSFLK  123 (353)
T ss_dssp             TTCSEEEC-CSSCCSSCCC--CCTTCCEE--ECCSSCCSC--C----CSCCTTCCEEECCSSCCSSCC--CC-TTCTTCC
T ss_pred             CCCCEEEC-CCCCCccccc--chhhhhhh--hhhhcccch--h----hhhcccccccccccccccccc--ch-hhhccce
Confidence            56777777 5555544322  24577777  6666  221  1    122 45777777766433222  21 1335677


Q ss_pred             eEEEee
Q 047191          201 QCTLWV  206 (341)
Q Consensus       201 ~L~i~~  206 (341)
                      .|.+..
T Consensus       124 ~L~l~~  129 (353)
T d1jl5a_         124 IIDVDN  129 (353)
T ss_dssp             EEECCS
T ss_pred             eecccc
Confidence            777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.95  E-value=0.81  Score=33.57  Aligned_cols=53  Identities=15%  Similarity=0.040  Sum_probs=34.4

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHh
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILS  325 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~  325 (341)
                      ...+.++++++.|.|+.+.++.+.....    ...+|++|+|..+    .....++..+++
T Consensus        73 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~----~~~~l~~L~L~~Np~~C~C~~~~l~~~~~  129 (156)
T d2ifga3          73 PDAFHFTPRLSRLNLSFNALESLSWKTV----QGLSLQELVLSGNPLHCSCALRWLQRWEE  129 (156)
T ss_dssp             TTGGGSCSCCCEEECCSSCCSCCCSTTT----CSCCCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             cccccccccccceeccCCCCcccChhhh----ccccccccccCCCcccCCchHHHHHHHHH
Confidence            4556788999999999888765422111    2235889999877    234455666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.17  E-value=0.089  Score=45.85  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=46.5

Q ss_pred             hHHhhcCCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEcCCChhHHHHHHhc----CCCCCcEEEeeeee
Q 047191          269 IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVGAIGWAVLPVILSS----SVHLQSLVLRKVII  340 (341)
Q Consensus       269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~----cp~L~~L~l~~~~~  340 (341)
                      ..++..+++++.|.|..+.+....... ...+...++|++|+|..+..+..++..+.+.    .++|++|.+.+..|
T Consensus        20 ~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i   96 (460)
T d1z7xw1          20 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL   96 (460)
T ss_dssp             HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred             HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCc
Confidence            677888999999999887543211111 1112356789999997765555555554443    46899999876543