Citrus Sinensis ID: 047196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------
Protein Sequence
YLYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL
Secondary Structure (PSIPRED)
cEEEEEcccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccEEEEEEcccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccEEccHHHHHccccccEEEcccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEccccccccccccccEEcccccccccccHHHHcccccccccccccccEEEccHHHHccccccccEEccccEEEEcccccccccccccEEEccccEEEEccccccccccccccccccHHHHHcccccccEEEcccEEEEccccccccccccccEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHHcccccccccccccccccccHHHHcccccccEEcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccEEEcccccEEEEEEcccccEEEEEEEccccccccHHHHHHHHHHccccccccccEEEEEEcccccEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccEEcccccccccHHccccccccccccccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccccEEEcccccccccccHHHHHHHHHHEEEcccccccccHHHHHHHHHHcccccccHccccccccccccccEEEEEccccccEEEEEEEEEcEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHcHHcccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccccccccHHHHcccccccEEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHccccEEEEcccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccHHcEEEccccEEEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHEcccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHccHEEEEccccccccEEEEccccccccccc
Coil and Loop (DISEMBL)
YLYFLMAHYLfsgiespyitklittsnllsfhvPLTHCLLLYLVVAVAAASNITTDQQALLALKAHisydptnllaqnstsntsvCNWIGITCNVNSHRVTAlnisslnlqgtippqlgnlsslttlnlshnklsgdippsiftmhklkfldfsdnqlsgslssVTFNLSSVLDirldsdklsgelpvnicNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKklsgaipkeisnLTILRKISLRnnklrgeipheigylpnlenlvlGFNNLVGVVPAAIFNMSTVKKIYLLDnsllgsfslgidlslpnverlnlglnrfsgtipsfiTNASKLVYLDmgtnsfsgiipntigltgnpldgvlptsignLSMSLENIYisncniggsIPQLISNLSNLLLldlegnkltgsipvtFGRLQKLQglylpfnklagsipdqLCHLARLNTLglagnkfsgsipsclgnltslrspdlgsnrltsvlpstfwnlkdilffdlssnsldgplsldignLRVVIGINLsrnnfsgdipstigdlkdLQNISLACNgleglipesfgyLTELNLSFnklegeiprggpfanftaksfmgneklcglpnlqfpkckrrtrrkSKKKMLLLVIVLPLSTALIIAVPLALKyksirggksktlrrFSYQDLFRATEKfskenligvgsfgsvykgrlhDGIEVAIKVFHQNCAMALKSFEAECEVMKNIrhrnhvkrisscsnedfkaldclhstncslnifDKLNIMIDVASALEylhfshstpvihcdlkpknvfdfgigrlltgdrsmIQTETLVTIGYMAPGLL
Flexible Loop (DISEMBL)
YLYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFkklsgaipkeisnltilrKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKlcglpnlqfpkckrrtrrkskkkmLLLVIVLPLSTALIIAVPLALkyksirggksktlrrfSYQDLFRAtekfskenligvgSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRhrnhvkrisscsnEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLltgdrsmiqtetlvtigymapgll
Low Complexity Region (SEG)
YLYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHClllylvvavaaaSNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQlgnlsslttlnlshnklsGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPnlenlvlgfnnlvgvvPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQlisnlsnlllldlEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPkckrrtrrkskkkMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL
Disordered region (IsUnstruct)
*LYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKR******KKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGDRSMIQTETLVTIGYMA****
Disordered Region (DISOPRED)
YLYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHIS******L**NSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLP*********************LVIVLPLSTALIIAVPLALK****************YQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGD****QTETLVTIGYMAPGLL
Disordered Region (DISEMBL)
YLYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKC********KKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL
Disordered Region (DISPRO)
YLYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YLYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	827	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.899	0.736	0.338	1e-114
C0LGT6	1031	LRR receptor-like serine/	no	no	0.917	0.736	0.332	1e-108
Q9SD62	1025	Putative receptor-like pr	no	no	0.938	0.757	0.322	6e-98
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.873	0.736	0.338	1e-95
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.874	0.577	0.314	3e-93
C0LGW6	966	LRR receptor-like serine/	no	no	0.898	0.769	0.306	2e-89
Q42371	976	LRR receptor-like serine/	no	no	0.896	0.759	0.314	4e-89
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.868	0.574	0.318	1e-87
Q6XAT2	967	LRR receptor-like serine/	no	no	0.921	0.788	0.309	2e-84
O49318	1124	Probable leucine-rich rep	no	no	0.950	0.699	0.282	4e-84

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 302/893 (33%), Positives = 437/893 (48%), Gaps = 149/893 (16%)

Query: 55  TDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTI 114
           TD+QALL  K+ +S D   +L+  + S   +CNW G+TC   + RVT L +  L L G I
Sbjct: 24  TDRQALLQFKSQVSEDKRVVLSSWNHS-FPLCNWKGVTCGRKNKRVTHLELGRLQLGGVI 82

Query: 115 PPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLD 174
            P +GNLS L +L+L  N   G IP  +  + +L++LD   N L G +    +N S +L+
Sbjct: 83  SPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLN 142

Query: 175 IRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGA 234
           +RLDS++L G                          +P  L     L  LNL    + G 
Sbjct: 143 LRLDSNRLGG-------------------------SVPSELGSLTNLVQLNLYGNNMRGK 177

Query: 235 IPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVK 294
           +P  + NLT+L +++L +N L GEIP ++  L  + +L L  NN  GV P A++N+S++K
Sbjct: 178 LPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLK 237

Query: 295 KIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSG 354
            + +  N   G     + + LPN+   N+G N F+G+IP+ ++N S L  L M  N+ +G
Sbjct: 238 LLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTG 297

Query: 355 IIP--------------------------------------NTIGLTGNPLDGVLPTSIG 376
            IP                                       T+G+  N L G LP SI 
Sbjct: 298 SIPTFGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIA 357

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
           NLS  L  + +    I GSIP  I NL NL  L L+ N L+G +P + G+L  L+ L L 
Sbjct: 358 NLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLF 417

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTF 496
            N+L+G IP  + ++  L TL L+ N F G +P+ LGN + L    +G N+L   +P   
Sbjct: 418 SNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEI 477

Query: 497 WNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIG----------- 545
             ++ +L  D+S NSL G L  DIG L+ +  ++L  N  SG +P T+G           
Sbjct: 478 MKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLE 537

Query: 546 ---------DLKDL---QNISLACNGLEGLIPE---SFGYLTELNLSFNKLEGEIPRGGP 590
                    DLK L   + + L+ N L G IPE   SF  L  LNLSFN LEG++P  G 
Sbjct: 538 GNLFYGDIPDLKGLVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGI 597

Query: 591 FANFTAKSFMGNEKLC-GLPNLQFPKC--------KRRTRRKSKKKM-----LLLVIVLP 636
           F N T  S +GN  LC G+   Q   C        K+ + R  K  +     + L+++L 
Sbjct: 598 FENATTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLF 657

Query: 637 LSTALIIAVPLALKYKSIRGGKSKTL----RRFSYQDLFRATEKFSKENLIGVGSFGSVY 692
           +++  +I +    K K        TL     + SY DL  AT  FS  N++G GSFG+VY
Sbjct: 658 MASVTLIWLRKRKKNKETNNPTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVY 717

Query: 693 KG-RLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA---- 747
           K   L +   VA+KV +     A+KSF AECE +K+IRHRN VK +++CS+ DF+     
Sbjct: 718 KALLLTEKKVVAVKVLNMQRRGAMKSFMAECESLKDIRHRNLVKLLTACSSIDFQGNEFR 777

Query: 748 --------------------LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIH 787
                               ++ +H  + +L + ++LNI IDVAS L+YLH     P+ H
Sbjct: 778 ALIYEFMPNGSLDMWLHPEEVEEIHRPSRTLTLLERLNIAIDVASVLDYLHVHCHEPIAH 837

Query: 788 CDLKPKNVF----------DFGIGRLLT--GDRSMIQTETLV----TIGYMAP 824
           CDLKP NV           DFG+ RLL    + S     +      TIGY AP
Sbjct: 838 CDLKPSNVLLDDDLTAHVSDFGLARLLLKFDEESFFNQLSSAGVRGTIGYAAP 890

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 304/914 (33%), Positives = 430/914 (47%), Gaps = 155/914 (16%)

Query: 39  LLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSH 98
           LLL + +   A  +  TD QALL  K+ +S +    +  +   ++  CNWIG+TC     
Sbjct: 14  LLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRE 73

Query: 99  RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQL 158
           RV +LN+    L G I P +GNLS L  LNL+ N     IP  +  + +L++L+ S N L
Sbjct: 74  RVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLL 133

Query: 159 SGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC 218
            G + S   N S +  + L S+ L                         HG +P  L   
Sbjct: 134 EGRIPSSLSNCSRLSTVDLSSNHLG------------------------HG-VPSELGSL 168

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN 278
            +L +L+L    L+G  P  + NLT L+K+    N++RGEIP E+  L  +    +  N+
Sbjct: 169 SKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNS 228

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN 338
             G  P A++N+S+++ + L DNS  G+        LPN+ RL LG N+F+G IP  + N
Sbjct: 229 FSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLAN 288

Query: 339 ASKLVYLDMGTNSFSGIIPNTIG------------------------------------- 361
            S L   D+ +N  SG IP + G                                     
Sbjct: 289 ISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEY 348

Query: 362 --LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGS 419
             +  N L G LP SI NLS +L ++++    I G+IP  I NL +L  L LE N L+G 
Sbjct: 349 LDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGE 408

Query: 420 IPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLR 479
           +PV+FG+L  LQ + L  N ++G IP    ++ RL  L L  N F G IP  LG    L 
Sbjct: 409 LPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLL 468

Query: 480 SPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGD 539
              + +NRL   +P     +  + + DLS+N L G    ++G L +++G+  S N  SG 
Sbjct: 469 DLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGK 528

Query: 540 IPSTIGD-----------------------LKDLQNISLACNGLEGLIPE---SFGYLTE 573
           +P  IG                        L  L+N+  + N L G IP    S   L  
Sbjct: 529 MPQAIGGCLSMEFLFMQGNSFDGAIPDISRLVSLKNVDFSNNNLSGRIPRYLASLPSLRN 588

Query: 574 LNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLC-GLPNLQFPKC-----KRRTRRKSKKK 627
           LNLS NK EG +P  G F N TA S  GN  +C G+  +Q   C      R+ +  S +K
Sbjct: 589 LNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQASPRKRKPLSVRK 648

Query: 628 MLLLVIVLPLSTALIIAVPLALKYKSIRGGK----------SKTLRRF----SYQDLFRA 673
            ++  I + +++ L+I +  +L +   R  K          S TL  F    SY++L  A
Sbjct: 649 KVVSGICIGIASLLLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGMFHEKVSYEELHSA 708

Query: 674 TEKFSKENLIGVGSFGSVYKGRLHDGIE---VAIKVFHQNCAMALKSFEAECEVMKNIRH 730
           T +FS  NLIG G+FG+V+KG L  G E   VA+KV +     A KSF AECE  K IRH
Sbjct: 709 TSRFSSTNLIGSGNFGNVFKGLL--GPENKLVAVKVLNLLKHGATKSFMAECETFKGIRH 766

Query: 731 RNHVKRISSCSN-----EDFKA-------------------LDCLHSTNCSLNIFDKLNI 766
           RN VK I+ CS+      DF+A                   L+ ++  + SL   +KLNI
Sbjct: 767 RNLVKLITVCSSLDSEGNDFRALVYEFMPKGSLDMWLQLEDLERVNDHSRSLTPAEKLNI 826

Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTE- 814
            IDVASALEYLH     PV HCD+KP N+           DFG+ +LL   DR     + 
Sbjct: 827 AIDVASALEYLHVHCHDPVAHCDIKPSNILLDDDLTAHVSDFGLAQLLYKYDRESFLNQF 886

Query: 815 ----TLVTIGYMAP 824
                  TIGY AP
Sbjct: 887 SSAGVRGTIGYAAP 900

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  359 bits (921), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 300/931 (32%), Positives = 433/931 (46%), Gaps = 155/931 (16%)

Query: 19  ITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQN 78
           + +LI  S LL   V L H     +V A        TD+QALL  K+ +S + + ++  +
Sbjct: 7   VMRLILVSALL-VSVSLEHS---DMVCAQTIRLTEETDKQALLEFKSQVS-ETSRVVLGS 61

Query: 79  STSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDI 138
              +  +C+W G+ C +   RVT +++  L L G + P +GNLS L +LNL+ N   G I
Sbjct: 62  WNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAI 121

Query: 139 PPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLK 198
           P  +  + +L++L+ S N L G                       G +PV + N      
Sbjct: 122 PSEVGNLFRLQYLNMS-NNLFG-----------------------GVIPVVLSNCSSLST 157

Query: 199 VLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE 258
           +   + ++  G +PL      +L LL+LG   L+G  P  + NLT L+ +    N++ GE
Sbjct: 158 LDLSSNHLEQG-VPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216

Query: 259 IPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNV 318
           IP +I  L  +    +  N   GV P  I+N+S++  + +  NS  G+        LPN+
Sbjct: 217 IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276

Query: 319 ERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG----------------- 361
           + L +G+N F+GTIP  ++N S L  LD+ +N  +G IP + G                 
Sbjct: 277 QILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGN 336

Query: 362 -----------LTG-----------NPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQL 399
                      LT            N L G LP  I NLS  L  + +    I GSIP  
Sbjct: 337 YSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHG 396

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
           I NL +L  LDL  N LTG +P + G L +L+ + L  N L+G IP  L +++ L  L L
Sbjct: 397 IGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYL 456

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLD 519
             N F GSIPS LG+ + L   +LG+N+L   +P     L  ++  ++S N L GPL  D
Sbjct: 457 LNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQD 516

Query: 520 IGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY--LTELNLS 577
           IG L+ ++ +++S N  SG IP T+ +   L+ + L  N   G IP+  G   L  L+LS
Sbjct: 517 IGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRGLTGLRFLDLS 576

Query: 578 FNKLEGEIPR------------------------GGPFANFTAKSFMGNEKLC-GLPNLQ 612
            N L G IP                          G F N +A S  GN  LC G+P+LQ
Sbjct: 577 KNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQ 636

Query: 613 FPKCKRR-TRRKSKKKMLLLVIV-------LPLSTALIIAVPLALKYKSIRGGKSKTLRR 664
              C     RR S  + ++ + V       L L   ++      L+ KS+R   ++  R 
Sbjct: 637 LQPCSVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNENDRS 696

Query: 665 F----------SYQDLFRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAM 713
           F          SY +L++ T  FS  NLIG G+FG+V+KG L      VAIKV +     
Sbjct: 697 FSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNLCKRG 756

Query: 714 ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD----------------CLHSTNC- 756
           A KSF AECE +  IRHRN VK ++ CS+ DF+  D                 LH     
Sbjct: 757 AAKSFIAECEALGGIRHRNLVKLVTICSSSDFEGNDFRALVYEFMPNGNLDMWLHPDEIE 816

Query: 757 -------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFG 799
                  +L +F +LNI IDVASAL YLH     P+ HCD+KP N+           DFG
Sbjct: 817 ETGNPSRTLGLFARLNIAIDVASALVYLHTYCHNPIAHCDIKPSNILLDKDLTAHVSDFG 876

Query: 800 IGRLLTG-DRSMIQTE-----TLVTIGYMAP 824
           + +LL   DR     +        TIGY AP
Sbjct: 877 LAQLLLKFDRDTFHIQFSSAGVRGTIGYAAP 907

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  351 bits (901), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 274/810 (33%), Positives = 412/810 (50%), Gaps = 88/810 (10%)

Query: 85  VCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT 144
           VCNW G+ CN  S +V  L+IS  +L G I P + NL+ LT L+LS N   G IPP I +
Sbjct: 53  VCNWSGVKCNKESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGS 112

Query: 145 MHK-LKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNI-CN-YLHYLKVLF 201
           +H+ LK L  S+N L G++      L+ ++ + L S++L+G +PV + CN     L+ + 
Sbjct: 113 LHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYID 172

Query: 202 LAKNMFHGQIPLALS-KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIP 260
           L+ N   G+IPL      K L+ L L   KL+G +P  +SN T L+ + L +N L GE+P
Sbjct: 173 LSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELP 232

Query: 261 HE-IGYLPNLENLVLGFNNLVG------VVP--AAIFNMSTVKKIYLLDNSLLGSFSLGI 311
            + I  +P L+ L L +N+ V       + P  A++ N S ++++ L  NSL G  +  +
Sbjct: 233 SQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSV 292

Query: 312 DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVL 371
                N+ +++L  NR  G+IP  I+N   L  L++ +N  SG IP              
Sbjct: 293 RHLSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPR------------- 339

Query: 372 PTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQ 431
              +  LS  LE +Y+SN ++ G IP  + ++  L LLD+  N L+GSIP +FG L +L+
Sbjct: 340 --ELCKLS-KLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLR 396

Query: 432 GLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIP-SCLGNLTSLR-SPDLGSNRLT 489
            L L  N L+G++P  L     L  L L+ N  +G+IP   + NL +L+   +L SN L+
Sbjct: 397 RLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLS 456

Query: 490 SVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKD 549
             +P     +  +L  DLSSN L G +   +G+   +  +NLSRN FS  +PS++G L  
Sbjct: 457 GPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPY 516

Query: 550 LQNISLACNGLEGLIPESF---GYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLC 606
           L+ + ++ N L G IP SF     L  LN SFN L G +   G F+  T +SF+G+  LC
Sbjct: 517 LKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSKLTIESFLGDSLLC 576

Query: 607 G-LPNLQFPKCKRRTRRKSKKKM---------LLLVIVLPL------STALIIAVPLALK 650
           G +  +Q   CK++ +  S             +L V   PL         L +     ++
Sbjct: 577 GSIKGMQ--ACKKKHKYPSVLLPVLLSLIATPVLCVFGYPLVQRSRFGKNLTVYAKEEVE 634

Query: 651 YKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN 710
            +  +        R SYQ L  AT  F+  +LIG G FG VYKG L +  +VA+KV    
Sbjct: 635 DEEKQNQNDPKYPRISYQQLIAATGGFNASSLIGSGRFGHVYKGVLRNNTKVAVKVLDPK 694

Query: 711 CAMALK-SFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCS------------ 757
            A+    SF+ EC+++K  RHRN ++ I++CS   F AL      N S            
Sbjct: 695 TALEFSGSFKRECQILKRTRHRNLIRIITTCSKPGFNALVLPLMPNGSLERHLYPGEYSS 754

Query: 758 --LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT 805
             L++   +NI  DVA  + YLH      V+HCDLKP N+           DFGI RL+ 
Sbjct: 755 KNLDLIQLVNICSDVAEGIAYLHHYSPVKVVHCDLKPSNILLDDEMTALVTDFGISRLVQ 814

Query: 806 GDRSMIQTETLV-----------TIGYMAP 824
           G    + T+  V           ++GY+AP
Sbjct: 815 GVEETVSTDDSVSFGSTDGLLCGSVGYIAP 844

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  343 bits (880), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 251/799 (31%), Positives = 412/799 (51%), Gaps = 76/799 (9%)

Query: 96   NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
            N+  +  L +S   L G IP ++ N  SL  L+LS+N L+G IP S+F + +L  L  ++
Sbjct: 335  NNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNN 394

Query: 156  NQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
            N L G+LSS   NL+++ +  L  + L G++P  I  +L  L++++L +N F G++P+ +
Sbjct: 395  NSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEI-GFLGKLEIMYLYENRFSGEMPVEI 453

Query: 216  SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG 275
              C RLQ ++    +LSG IP  I  L  L ++ LR N+L G IP  +G    +  + L 
Sbjct: 454  GNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLA 513

Query: 276  FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSF 335
             N L G +P++   ++ ++   + +NSL G+    + ++L N+ R+N   N+F+G+I   
Sbjct: 514  DNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSL-INLKNLTRINFSSNKFNGSISPL 572

Query: 336  ITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPTSIGNLSMSLENIY 386
              ++S L + D+  N F G IP  +G         L  N   G +P + G +S  L  + 
Sbjct: 573  CGSSSYLSF-DVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKIS-ELSLLD 630

Query: 387  ISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPD 446
            IS  ++ G IP  +     L  +DL  N L+G IP   G+L  L  L L  NK  GS+P 
Sbjct: 631  ISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPT 690

Query: 447  QLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFD 506
            ++  L  + TL L GN  +GSIP  +GNL +L + +L  N+L+  LPST   L  +    
Sbjct: 691  EIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELR 750

Query: 507  LSSNSLDGPLSLDIGNLR-VVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP 565
            LS N+L G + ++IG L+ +   ++LS NNF+G IPSTI  L  L+++ L+ N L G +P
Sbjct: 751  LSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVP 810

Query: 566  ESFGYLTE---LNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRR 622
               G +     LNLS+N LEG++ +   F+ + A +F+GN  LCG P     +   + +R
Sbjct: 811  GQIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQR 868

Query: 623  KSKKKMLLLVIVLPLSTA---LIIAVPLALK-----YKSIRGGKSKTL------------ 662
                K ++++  +    A   +++ + L  K     +K +RGG S               
Sbjct: 869  SLSPKTVVIISAISSLAAIALMVLVIILFFKQNHDLFKKVRGGNSAFSSNSSSSQAPLFS 928

Query: 663  -----RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAI-KVFHQNCAMALK 716
                     + D+  AT   ++E +IG G  G VYK  L +G  +A+ K+  ++  M+ K
Sbjct: 929  NGGAKSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKILWKDDLMSNK 988

Query: 717  SFEAECEVMKNIRHRNHVKRISSCSNE---------DFKA----LDCLHSTNCS-----L 758
            SF  E + +  IRHR+ VK +  CS++         ++ A     D LH+   +     L
Sbjct: 989  SFNREVKTLGTIRHRHLVKLMGYCSSKADGLNLLIYEYMANGSVWDWLHANENTKKKEVL 1048

Query: 759  NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR 808
                +L I + +A  +EYLH+    P++H D+K  NV           DFG+ ++LTG+ 
Sbjct: 1049 GWETRLKIALGLAQGVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAHLGDFGLAKILTGNY 1108

Query: 809  SM-IQTETLV--TIGYMAP 824
                ++ T+   + GY+AP
Sbjct: 1109 DTNTESNTMFAGSYGYIAP 1127

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  331 bits (848), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 262/856 (30%), Positives = 399/856 (46%), Gaps = 113/856 (13%)

Query: 35  LTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCN 94
           L+  ++ ++V  VA+A N   + +AL+A+K   S     LL  +   N+ +C+W G+ C+
Sbjct: 10  LSLAMVGFMVFGVASAMN--NEGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCD 67

Query: 95  VNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFS 154
             S+ V +LN+SSLNL G I P +G+L +L +++L  NKL+G IP  I     L +LD S
Sbjct: 68  NVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLS 127

Query: 155 DNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLA 214
           +N L G +      L  +  + L +++L+G +P  +   +  LK L LA N   G+I   
Sbjct: 128 ENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQ-IPNLKRLDLAGNHLTGEISRL 186

Query: 215 LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
           L   + LQ L L    L+G +  ++  LT L    +R N L G IP  IG   + + L +
Sbjct: 187 LYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDI 246

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPS 334
            +N + G +P   +N+  ++                       V  L+L  NR +G IP 
Sbjct: 247 SYNQITGEIP---YNIGFLQ-----------------------VATLSLQGNRLTGRIPE 280

Query: 335 FITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGG 394
            I     L  LD+  N   G IP        P+       +GNLS +   +Y+    + G
Sbjct: 281 VIGLMQALAVLDLSDNELVGPIP--------PI-------LGNLSFT-GKLYLHGNMLTG 324

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
            IP  + N+S L  L L  NKL G+IP   G+L++L  L L  N+L G IP  +   A L
Sbjct: 325 PIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAAL 384

Query: 455 NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDG 514
           N   + GN  SGSIP    NL SL   +L SN     +P    ++ ++   DLS N+  G
Sbjct: 385 NQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSG 444

Query: 515 PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY---- 570
            + L +G+L  ++ +NLSRN+ SG +P+  G+L+ +Q I ++ N L G+IP   G     
Sbjct: 445 SIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNL 504

Query: 571 -----------------------LTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCG 607
                                  L  LN+SFN L G +P    F+ F   SF+GN  LCG
Sbjct: 505 NSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLCG 564

Query: 608 LPNLQFPKCKRRTRRKSKKKMLLLVIVLPLSTAL---IIAVPLALKYKSIRGGKSKTLRR 664
             N     C    + +   +  L+ IVL + T L    +AV  +++ K I  G SK    
Sbjct: 565 --NWVGSICGPLPKSRVFSRGALICIVLGVITLLCMIFLAVYKSMQQKKILQGSSKQAEG 622

Query: 665 F-------------SYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC 711
                         ++ D+ R TE  +++ +IG G+  +VYK  L     +AIK  +   
Sbjct: 623 LTKLVILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTVYKCALKSSRPIAIKRLYNQY 682

Query: 712 AMALKSFEAECEVMKNIRHRN----HVKRISSCSN-------EDFKALDCLHST--NCSL 758
              L+ FE E E + +IRHRN    H   +S   N       E+    D LH +     L
Sbjct: 683 PHNLREFETELETIGSIRHRNIVSLHGYALSPTGNLLFYDYMENGSLWDLLHGSLKKVKL 742

Query: 759 NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR 808
           +   +L I +  A  L YLH   +  +IH D+K  N+           DFGI + +   +
Sbjct: 743 DWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDENFEAHLSDFGIAKSIPASK 802

Query: 809 SMIQTETLVTIGYMAP 824
           +   T  L TIGY+ P
Sbjct: 803 THASTYVLGTIGYIDP 818

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  330 bits (845), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 269/856 (31%), Positives = 406/856 (47%), Gaps = 115/856 (13%)

Query: 39  LLLYLVVAVAAASNITTDQQA-LLALKAHISYDPTNLLAQNSTSNTS-VCNWIGITCNVN 96
           +LL  +  ++  + +T+++ A LL +K     D  N+L   +TS +S  C W G++C   
Sbjct: 8   VLLGFLFCLSLVATVTSEEGATLLEIKKSFK-DVNNVLYDWTTSPSSDYCVWRGVSCENV 66

Query: 97  SHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDN 156
           +  V ALN+S LNL G I P +G+L SL +++L  N+LSG IP  I     L+ LD S N
Sbjct: 67  TFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFN 126

Query: 157 QLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALS 216
           +LSG +      L  +  + L +++L G +P  + + +  LK+L LA+N   G+IP  + 
Sbjct: 127 ELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTL-SQIPNLKILDLAQNKLSGEIPRLIY 185

Query: 217 KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGF 276
             + LQ L L    L G I  ++  LT L    +RNN L G IP  IG     + L L +
Sbjct: 186 WNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSY 245

Query: 277 NNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI 336
           N L G +P                           D+    V  L+L  N+ SG IPS I
Sbjct: 246 NQLTGEIP--------------------------FDIGFLQVATLSLQGNQLSGKIPSVI 279

Query: 337 TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSI 396
                L  LD+  N  SG IP        P+       +GNL+ + E +Y+ +  + GSI
Sbjct: 280 GLMQALAVLDLSGNLLSGSIP--------PI-------LGNLTFT-EKLYLHSNKLTGSI 323

Query: 397 PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNT 456
           P  + N+S L  L+L  N LTG IP   G+L  L  L +  N L G IPD L     LN+
Sbjct: 324 PPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNS 383

Query: 457 LGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPL 516
           L + GNKFSG+IP     L S+   +L SN +   +P     + ++   DLS+N ++G +
Sbjct: 384 LNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGII 443

Query: 517 SLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY------ 570
              +G+L  ++ +NLSRN+ +G +P   G+L+ +  I L+ N + G IPE          
Sbjct: 444 PSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIIL 503

Query: 571 --------------------LTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPN 610
                               LT LN+S N L G+IP+   F+ F+  SF+GN  LCG   
Sbjct: 504 LRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCG-SW 562

Query: 611 LQFP-KCKRRTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKS----IRGGKSKTLRRF 665
           L  P    RRT R S  +  +L I +     L++ +  A +  +    + G   K +   
Sbjct: 563 LNSPCHDSRRTVRVSISRAAILGIAIGGLVILLMVLIAACRPHNPPPFLDGSLDKPVTYS 622

Query: 666 S--------------YQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC 711
           +              Y+D+ R TE  S++ +IG G+  +VYK  L +   VAIK  + + 
Sbjct: 623 TPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKRLYSHN 682

Query: 712 AMALKSFEAECEVMKNIRHRNHVK-RISSCSN----------EDFKALDCLH--STNCSL 758
             ++K FE E E++ +I+HRN V  +  S S+          E+    D LH  +   +L
Sbjct: 683 PQSMKQFETELEMLSSIKHRNLVSLQAYSLSHLGSLLFYDYLENGSLWDLLHGPTKKKTL 742

Query: 759 NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR 808
           +   +L I    A  L YLH   S  +IH D+K  N+           DFGI + L   +
Sbjct: 743 DWDTRLKIAYGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDLEARLTDFGIAKSLCVSK 802

Query: 809 SMIQTETLVTIGYMAP 824
           S   T  + TIGY+ P
Sbjct: 803 SHTSTYVMGTIGYIDP 818

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  325 bits (832), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 258/810 (31%), Positives = 401/810 (49%), Gaps = 92/810 (11%)

Query: 96   NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
            N+  +  L +S   L G IP +L    SL  L+LS+N L+G IP ++F + +L  L   +
Sbjct: 334  NNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHN 393

Query: 156  NQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
            N L G+LS    NL+++  + L  + L G+LP  I + L  L+VLFL +N F G+IP  +
Sbjct: 394  NTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEI-SALRKLEVLFLYENRFSGEIPQEI 452

Query: 216  SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG 275
              C  L+++++      G IP  I  L  L  + LR N+L G +P  +G    L  L L 
Sbjct: 453  GNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLA 512

Query: 276  FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSF 335
             N L G +P++   +  ++++ L +NSL G+    + +SL N+ R+NL  NR +GTI   
Sbjct: 513  DNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSL-ISLRNLTRINLSHNRLNGTIHPL 571

Query: 336  ITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPTSIGNLSMSLENIY 386
              ++S L + D+  N F   IP  +G         L  N L G +P ++G +   L  + 
Sbjct: 572  CGSSSYLSF-DVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIR-ELSLLD 629

Query: 387  ISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPD 446
            +S+  + G+IP  +     L  +DL  N L+G IP   G+L +L  L L  N+   S+P 
Sbjct: 630  MSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPT 689

Query: 447  QLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFD 506
            +L +  +L  L L GN  +GSIP  +GNL +L   +L  N+ +  LP     L  +    
Sbjct: 690  ELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELR 749

Query: 507  LSSNSLDGPLSLDIGNLR-VVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP 565
            LS NSL G + ++IG L+ +   ++LS NNF+GDIPSTIG L  L+ + L+ N L G +P
Sbjct: 750  LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809

Query: 566  ESFGYLTE---LNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKR-RTR 621
             S G +     LN+SFN L G++ +   F+ + A SF+GN  LCG P     +C R R+ 
Sbjct: 810  GSVGDMKSLGYLNVSFNNLGGKLKK--QFSRWPADSFLGNTGLCGSP---LSRCNRVRSN 864

Query: 622  RKSKKKMLLLVIVLPLSTAL------IIAVPLALKYKS---------------------- 653
             K +      V+++   +AL      I+ + L  K +                       
Sbjct: 865  NKQQGLSARSVVIISAISALTAIGLMILVIALFFKQRHDFFKKVGHGSTAYTSSSSSSQA 924

Query: 654  -----IRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAI-KVF 707
                  R G SK+  R  ++D+  AT   S+E +IG G  G VYK  L +G  VA+ K+ 
Sbjct: 925  THKPLFRNGASKSDIR--WEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKIL 982

Query: 708  HQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN-------------EDFKALDCLHST 754
             ++  M+ KSF  E + +  IRHR+ VK +  CS+             ++    D LH  
Sbjct: 983  WKDDLMSNKSFSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHED 1042

Query: 755  NCSLN----IFD---KLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------D 797
               L     + D   +L I + +A  +EYLH     P++H D+K  NV           D
Sbjct: 1043 KPVLEKKKKLLDWEARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGD 1102

Query: 798  FGIGRLLTGD---RSMIQTETLVTIGYMAP 824
            FG+ ++LT +    +   T    + GY+AP
Sbjct: 1103 FGLAKVLTENCDTNTDSNTWFACSYGYIAP 1132

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  314 bits (805), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 260/840 (30%), Positives = 389/840 (46%), Gaps = 78/840 (9%)

Query: 35  LTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCN 94
           L  CL + + + + + S +  + +AL+A+KA  S     LL  +   N   C+W G+ C+
Sbjct: 10  LFFCLGMVVFMLLGSVSPMNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCD 69

Query: 95  VNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFS 154
             S  V +LN+S+LNL G I   LG+L +L +++L  NKL G IP  I     L ++DFS
Sbjct: 70  NVSLNVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFS 129

Query: 155 DNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLA 214
            N L G +      L  +  + L +++L+G +P  +   +  LK L LA+N   G+IP  
Sbjct: 130 TNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQ-IPNLKTLDLARNQLTGEIPRL 188

Query: 215 LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
           L   + LQ L L    L+G +  ++  LT L    +R N L G IP  IG   + E L +
Sbjct: 189 LYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDV 248

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPS 334
            +N + GV+P  I     V  + L  N L G     I L +  +  L+L  N  +G IP 
Sbjct: 249 SYNQITGVIPYNI-GFLQVATLSLQGNKLTGRIPEVIGL-MQALAVLDLSDNELTGPIPP 306

Query: 335 FITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPTSIGNLSMSLENI 385
            + N S    L +  N  +G IP  +G         L  N L G +P  +G L    E +
Sbjct: 307 ILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFE-L 365

Query: 386 YISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP 445
            ++N N+ G IP  IS+ + L   ++ GN L+G++P+ F  L  L  L L  N   G IP
Sbjct: 366 NLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGKIP 425

Query: 446 DQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFF 505
            +L H+  L+TL L+GN FSGSIP  LG+L  L   +L  N L   LP+ F NL+ I   
Sbjct: 426 AELGHIINLDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQII 485

Query: 506 DLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP 565
           D+S N L G +  ++G L+ +  + L+ N   G IP  + +   L N             
Sbjct: 486 DVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLAN------------- 532

Query: 566 ESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCG-----LPNLQFPKCKRRT 620
                   LN+SFN L G IP    F  F+  SF GN  LCG     +     PK +  T
Sbjct: 533 --------LNISFNNLSGIIPPMKNFTRFSPASFFGNPFLCGNWVGSICGPSLPKSQVFT 584

Query: 621 RRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKT-------------LRRFSY 667
           R      + +++  + L   + IAV  + + K +  G SK              +   ++
Sbjct: 585 RVAV---ICMVLGFITLICMIFIAVYKSKQQKPVLKGSSKQPEGSTKLVILHMDMAIHTF 641

Query: 668 QDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKN 727
            D+ R TE   ++ +IG G+  +VYK        +AIK  +       + FE E E + +
Sbjct: 642 DDIMRVTENLDEKYIIGYGASSTVYKCTSKTSRPIAIKRIYNQYPSNFREFETELETIGS 701

Query: 728 IRHRN----HVKRISSCSN-------EDFKALDCLH--STNCSLNIFDKLNIMIDVASAL 774
           IRHRN    H   +S   N       E+    D LH       L+   +L I +  A  L
Sbjct: 702 IRHRNIVSLHGYALSPFGNLLFYDYMENGSLWDLLHGPGKKVKLDWETRLKIAVGAAQGL 761

Query: 775 EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            YLH   +  +IH D+K  N+           DFGI + +   ++   T  L TIGY+ P
Sbjct: 762 AYLHHDCTPRIIHRDIKSSNILLDGNFEARLSDFGIAKSIPATKTYASTYVLGTIGYIDP 821

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  313 bits (802), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 277/979 (28%), Positives = 421/979 (43%), Gaps = 193/979 (19%)

Query: 39  LLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSH 98
           +L  L + V  + ++ +D Q LL LK     D  N L   +  + + CNWIG+ C+    
Sbjct: 19  VLFLLTLLVWTSESLNSDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGS 78

Query: 99  R-------VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFL 151
                   VT+L++SS+NL G + P +G L +L  LNL++N L+GDIP  I    KL+ +
Sbjct: 79  SSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVM 138

Query: 152 DFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNY------------------ 193
             ++NQ  GS+      LS +    + ++KLSG LP  I +                   
Sbjct: 139 FLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLP 198

Query: 194 -----LHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKI 248
                L+ L      +N F G IP  + KC  L+LL L    +SG +PKEI  L  L+++
Sbjct: 199 RSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEV 258

Query: 249 SLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFS 308
            L  NK  G IP +IG L +LE L L  N+LVG +P+ I NM ++KK+YL  N L G+  
Sbjct: 259 ILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIP 318

Query: 309 ---------LGIDLS--------------------------------------LPNVERL 321
                    + ID S                                      L N+ +L
Sbjct: 319 KELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKL 378

Query: 322 NLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGL---------TGNPLDGVLP 372
           +L +N  +G IP    N + +  L +  NS SG+IP  +GL         + N L G +P
Sbjct: 379 DLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIP 438

Query: 373 TSI-----------------GNLS------MSLENIYISNCNIGGSIPQLISNLSNLLLL 409
             I                 GN+        SL  + +    + G  P  +  L NL  +
Sbjct: 439 PFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAI 498

Query: 410 DLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIP 469
           +L+ N+ +G +P   G  QKLQ L+L  N+ + ++P+++  L+ L T  ++ N  +G IP
Sbjct: 499 ELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIP 558

Query: 470 SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNL------ 523
           S + N   L+  DL  N     LP    +L  +    LS N   G +   IGNL      
Sbjct: 559 SEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTEL 618

Query: 524 -------------------RVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLI 564
                               + I +NLS N+FSG+IP  IG+L  L  +SL  N L G I
Sbjct: 619 QMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEI 678

Query: 565 PESFGYLTEL---NLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCG------------LP 609
           P +F  L+ L   N S+N L G++P    F N T  SF+GN+ LCG             P
Sbjct: 679 PTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWP 738

Query: 610 NLQFPKC--KRRTRRKSKKK-------MLLLVIVLPLSTALIIAVPLALKYKSIRGGKSK 660
           ++   K    RR R             +LL+ IV+      +      +  K     +S 
Sbjct: 739 HISSLKAGSARRGRIIIIVSSVIGGISLLLIAIVVHFLRNPVEPTAPYVHDKEPFFQESD 798

Query: 661 TL----RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFH-------Q 709
                  RF+ +D+  AT+ F    ++G G+ G+VYK  +  G  +A+K           
Sbjct: 799 IYFVPKERFTVKDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNN 858

Query: 710 NCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-------FKAL------DCLHSTNC 756
           N      SF AE   +  IRHRN V+  S C ++        ++ +      + LH    
Sbjct: 859 NSNNTDNSFRAEILTLGKIRHRNIVRLYSFCYHQGSNSNLLLYEYMSRGSLGELLHGGKS 918

Query: 757 -SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT 805
            S++   +  I +  A  L YLH      +IH D+K  N+           DFG+ +++ 
Sbjct: 919 HSMDWPTRFAIALGAAEGLAYLHHDCKPRIIHRDIKSNNILIDENFEAHVGDFGLAKVID 978

Query: 806 GDRSMIQTETLVTIGYMAP 824
              S   +    + GY+AP
Sbjct: 979 MPLSKSVSAVAGSYGYIAP 997

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	827
359483198	1087	PREDICTED: probable LRR receptor-like se	0.943	0.717	0.437	0.0
224139658	1019	predicted protein [Populus trichocarpa]	0.902	0.732	0.417	1e-176
255572272	1089	serine-threonine protein kinase, plant-t	0.944	0.717	0.407	1e-175
255578886	1043	serine-threonine protein kinase, plant-t	0.948	0.751	0.432	1e-174
359485453	1202	PREDICTED: probable LRR receptor-like se	0.871	0.599	0.440	1e-167
449465016	1092	PREDICTED: probable LRR receptor-like se	0.943	0.714	0.385	1e-166
224116832	1061	predicted protein [Populus trichocarpa]	0.877	0.684	0.429	1e-166
298204751	1979	unnamed protein product [Vitis vinifera]	0.897	0.374	0.426	1e-165
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.877	0.511	0.424	1e-165
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.862	0.591	0.435	1e-163

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/954 (43%), Positives = 529/954 (55%), Gaps = 174/954 (18%)

Query: 45  VAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALN 104
             VA + +  TDQ +LLALKAHI+ DP ++LA N ++ TS C WIG++CN    RV AL+
Sbjct: 21  ACVAMSLSNFTDQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWIGVSCNAQQQRVIALD 80

Query: 105 ISSLNLQGTIPPQLGNLS------------------------SLTTLNLSHNKLSGDIPP 140
           +S+L L+GTIPP LGNLS                        SL ++NL +N LSG IPP
Sbjct: 81  LSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPVPVEVGQLTSLLSMNLQYNLLSGQIPP 140

Query: 141 SIFTMHKL------------------------------------------------KFLD 152
           S   +++L                                                K LD
Sbjct: 141 SFGNLNRLQSLFLGNNSFTGTIPPSIGNMSMLETLGLGGNHLQGNIPEEIGKLSTMKILD 200

Query: 153 FSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNY-LHYLKVLFLAKNMFHGQI 211
              NQL G++ S  FN+SS+ +I L  + LSG+LP ++CN+ L  L+ + L+ N F G I
Sbjct: 201 IQSNQLVGAIPSAIFNISSLQEIALTYNSLSGDLPSSMCNHELSALRGIRLSANRFTGPI 260

Query: 212 PLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLEN 271
           P  LSKC  LQ L L F K +G IP+ I +LT L  +SL  N L GE+P EIG L  L  
Sbjct: 261 PSNLSKCGELQTLYLSFNKFTGGIPRSIDSLTKLTMLSLAANSLSGEVPCEIGSLCTLNV 320

Query: 272 LVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGT 331
           L +  N+L G +P  IFN+S++    L  N+L G+        LPN+E L L +N  SG 
Sbjct: 321 LNIEDNSLTGHIPFQIFNISSMVSGSLTRNNLSGNLPPNFGSYLPNLENLILEINWLSGI 380

Query: 332 IPSFITNASKLVYLDMGTNSFSGIIPNTIG------------------------------ 361
           IPS I NASKL  LD G N  +G IP+ +G                              
Sbjct: 381 IPSSIGNASKLRSLDFGYNMLTGSIPHALGSLRFLERLNLGVNNLKGESYIQELSFLTSL 440

Query: 362 ----------LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDL 411
                     L+ NPL G+LP SIGNLS SL+    + C + G+IP  I NLSNL LL L
Sbjct: 441 TNCKRLRILYLSFNPLIGILPISIGNLSTSLQRFEANTCKLKGNIPTEIGNLSNLYLLSL 500

Query: 412 EGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSC 471
             N LTG+IP + G+LQKLQGLYLP NKL GSIP+ +C L  L  L L  N+ SGSIP+C
Sbjct: 501 NNNDLTGTIPPSIGQLQKLQGLYLPSNKLQGSIPNDICQLRNLGELFLTNNQLSGSIPAC 560

Query: 472 LGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINL 531
           LG LT LR   LGSN+L S +PST W+L  IL  D+SSN L G L  D+GNL+V++ I+L
Sbjct: 561 LGELTFLRHLYLGSNKLNSTIPSTLWSLIHILSLDMSSNFLVGYLPSDMGNLKVLVKIDL 620

Query: 532 SRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---------------------- 569
           SRN  SG+IPS IG L+DL ++SLA N  EG I  SF                       
Sbjct: 621 SRNQLSGEIPSNIGGLQDLTSLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALFGEIPKS 680

Query: 570 -----YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRRKS 624
                YL  L++SFN L GEIP  GPFANF+A+SFM N+ LCG P L+ P C+  TR  +
Sbjct: 681 LEGLVYLKYLDVSFNGLYGEIPPEGPFANFSAESFMMNKALCGSPRLKLPPCRTGTRWST 740

Query: 625 KKKMLLLVIVLP--LST----ALIIAVPLALKYKSIRGGKSKTL-----RRFSYQDLFRA 673
               LLL  +LP  LST    ALI       K  ++   +S++L     RR SYQ++F+A
Sbjct: 741 TISWLLLKYILPAILSTLLFLALIFVWTRCRKRNAVLPTQSESLLTATWRRISYQEIFQA 800

Query: 674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
           T  FS  NL+G GS GSVY+G L DG   AIKVF+     A KSF+AECEVM +IRHRN 
Sbjct: 801 TNGFSAGNLLGRGSLGSVYRGTLSDGKNAAIKVFNLQEEAAFKSFDAECEVMHHIRHRNL 860

Query: 734 VKRISSCSNE--DFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
           +K +SSCSN   DFKAL             L+S N  L+I  +LNIMIDVA A+EYLH  
Sbjct: 861 IKIVSSCSNSYIDFKALVLEYVPNGSLERWLYSHNYCLDILQRLNIMIDVALAMEYLHHG 920

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            STPV+HCDLKP N+           DFGI +LL  + S+ +T+TL TIGYMAP
Sbjct: 921 CSTPVVHCDLKPSNILLDEDFGGHVGDFGIAKLLREEESIRETQTLATIGYMAP 974

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 373/894 (41%), Positives = 491/894 (54%), Gaps = 148/894 (16%)

Query: 55  TDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTI 114
           TDQ ALLA K HI++DP N+L  + +S TS CNW+G++C++   RVTAL++SS+ L GTI
Sbjct: 30  TDQSALLAFKDHITFDPQNMLTHSWSSKTSFCNWMGVSCSLRRQRVTALDLSSMGLLGTI 89

Query: 115 PPQLGNLSSLTTLNLSHNKLSGD-------------------------IPPSIFTMHKLK 149
           PPQLGNLS L  L L +N   GD                         +P S   +H+L+
Sbjct: 90  PPQLGNLSFLQYLILYNNSFHGDLPSEIGNLRRLQVMDIGSNKLSLVIVPESFGNLHRLE 149

Query: 150 FLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHG 209
            L F  N L+G++ S  FN+SS+  + L  + L G LP N+C++L  L++L L+ N   G
Sbjct: 150 ELRFDGNNLTGTIPSTIFNISSLKVLDLMFNGLFGSLPKNMCDHLPRLEMLLLSSNQLSG 209

Query: 210 QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNL 269
           QIP  L KC+ LQLL L +   +G IP+E+                        G+LP L
Sbjct: 210 QIPSDLFKCRELQLLWLPYNNFTGVIPEEL------------------------GFLPML 245

Query: 270 ENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFS 329
           E L LG N L G +P +IFNM++++ + +  N+L GS      + LPN+E L L LN  +
Sbjct: 246 EVLNLGVNMLSGDLPRSIFNMTSLRTMQICCNNLSGSIPQENSIDLPNLEELQLNLNGIT 305

Query: 330 GTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------------------------- 361
           G++P F+ N S+L  LD+  N  +G +    G                            
Sbjct: 306 GSMPRFLGNMSRLEILDLSYNKMTGNVLQEFGNLRALQVLSLQSNSFTNHPSSQTLNFIT 365

Query: 362 ------------LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLL 409
                       +  NPLDG+LP S+GNLS  L   Y+    + G+IP  I NLSNL++L
Sbjct: 366 SLTNSRQLKELHIGDNPLDGMLPNSVGNLSSFLTKFYVYASKLKGNIPGEIGNLSNLIVL 425

Query: 410 DLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIP 469
            LE N L G IP T G L+K+Q LYL  N L GSIP  +C   RL  + L  N  SG IP
Sbjct: 426 SLEENSLMGPIPTTVGGLRKIQVLYLHKNNLNGSIPSDICLARRLVDITLNNNVLSGEIP 485

Query: 470 SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGI 529
           SC+GNLTSLR+  L  N L+S +P   W+LKD+L  +L SN L G L   +G +   IGI
Sbjct: 486 SCIGNLTSLRNLYLHFNILSSTIPMALWSLKDLLILNLHSNFLYGSLPSQVGEMEAAIGI 545

Query: 530 NLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG-------------------- 569
            LS N  SG+IPSTIG L++L   SL+ N  +G IPE+FG                    
Sbjct: 546 RLSSNQLSGNIPSTIGSLQNLIRFSLSKNSFQGSIPEAFGGLVSLELLDLSQNNLSGEIP 605

Query: 570 -------YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRR 622
                  YL   ++SFN L+GEIPRGGPFANFTA+SF+ N+ LCG   LQ P C   +R+
Sbjct: 606 KSLEALRYLEFFSVSFNGLQGEIPRGGPFANFTARSFIMNKGLCGPSRLQVPPCSIESRK 665

Query: 623 KSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSK-----------TLRRFSYQDLF 671
            SK K  LL   LP   ++++ V         R    K             RR SY +L 
Sbjct: 666 DSKTKSRLLRFSLPTVASILLVVAFIFLVMGCRRRYRKDPIPEALPVTAIQRRISYLELL 725

Query: 672 RATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHR 731
            AT +F + NL+G+GSFGSVY+GRL DG+ VA+K+F+     A +SF+ ECE+M+NIRHR
Sbjct: 726 HATNEFHESNLLGIGSFGSVYQGRLRDGLNVAVKIFNLQLQRAFRSFDTECEIMRNIRHR 785

Query: 732 NHVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
           N VK I SCSN DFKAL             L+S N  L+I  ++NIMIDVASALEYLH  
Sbjct: 786 NLVKIICSCSNLDFKALVLEYMPKGSLEKWLYSHNYCLDIIQRVNIMIDVASALEYLHHG 845

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           + +PV+HCDLKP NV           DFGI +LL  + S  QT TL TIGYMAP
Sbjct: 846 YPSPVVHCDLKPSNVLLDEDMVAHVCDFGIAKLLGENESFAQTRTLATIGYMAP 899

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 390/956 (40%), Positives = 523/956 (54%), Gaps = 175/956 (18%)

Query: 42  YLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVT 101
           +L  ++A   +  TD  ALL LK H ++DP   +++N +S TS C+W G+TC+   +RV 
Sbjct: 17  WLQFSLAIPKSNLTDLSALLVLKEHSNFDP--FMSKNWSSATSFCHWYGVTCSERHNRVV 74

Query: 102 ALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGS 161
           AL +S++ ++G +PP +GNLS L  +++S+N  SG +P  +  +H+LKF++FS+N   G 
Sbjct: 75  ALTLSNMGIKGIVPPHIGNLSFLVHIDMSNNSYSGHLPNELGNLHRLKFMNFSNNSFVGE 134

Query: 162 L-----------------SSVTFNLSSVLDIR----------------LDS--------- 179
           +                 +S+T   SS+ +I                 LD+         
Sbjct: 135 IPSSLAMLPKLQHLLLANNSLTAGRSSIFNITTLNTLDLNDNLLGGNILDNIGGNLSNLQ 194

Query: 180 ------DKLSGELPVNI------------------------CNYLHYLKVLFLAKNMFHG 209
                 ++LSG  P  I                        CN    L++L LA N  +G
Sbjct: 195 VLNMGLNQLSGSFPPKILDLPSLKFIYLQVNNLSGNLKEILCNQNSKLQLLNLAGNQLYG 254

Query: 210 QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNL 269
           QIP  L KCK L+ L L   K +G+IP+ I NLT L+ +SL  N L G IP EIG L NL
Sbjct: 255 QIPSDLYKCKELRSLALHANKFTGSIPRTIGNLTKLKWLSLGRNNLTGRIPLEIGNLQNL 314

Query: 270 ENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFS 329
           + + L FNNL G +P A+FN+ST+K I +  N+LLG+    + L LPN+  L LG+N+ S
Sbjct: 315 QIVHLSFNNLNGSIPHALFNISTMKWIAMTSNNLLGNLPTSLGLHLPNLIWLYLGINKLS 374

Query: 330 GTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------------------------- 361
           G IPS+I+NASKL  L++ +NSF+G IP+++G                            
Sbjct: 375 GPIPSYISNASKLTILELPSNSFTGFIPDSLGDLRNLQTLKLGANLLSSKKTSQELTIFS 434

Query: 362 ------------LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLL 409
                       L+ NPLDG LP S+GNLS SLE+   S+  I GS+ + I NLS+L  L
Sbjct: 435 SLKNCQNLKYLWLSYNPLDGYLPHSVGNLSNSLESFLASDGLIKGSVHESIGNLSSLTRL 494

Query: 410 DLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIP 469
           +L  N LTG IP T G L+ LQGLYL  N L GSIP +LC L  L  L L GNK SGSIP
Sbjct: 495 NLGNNDLTGRIPTTIGTLKHLQGLYLHGNDLDGSIPSELCDLRTLYNLELTGNKLSGSIP 554

Query: 470 SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGI 529
           +C  NLTSLR+  L SNR  S + ST W LKDIL  +L+SN L G L  +I NLR V  I
Sbjct: 555 TCFSNLTSLRNLFLASNRFVSTISSTLWTLKDILQVNLASNYLTGSLPSEIENLRAVYMI 614

Query: 530 NLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG-------------------- 569
           N+S+N  SG+IP +IG L+DL  + L+ N L+G IP+S G                    
Sbjct: 615 NISKNQLSGEIPISIGGLQDLAQLYLSGNKLQGPIPQSVGDIKSLEFLDLSSNNLSGMIP 674

Query: 570 -------YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCK----R 618
                  YL   N+SFN L+GEIP GG F+NF+A+SF+GNE LCG   LQ   CK    R
Sbjct: 675 KSLDNLLYLKYFNVSFNYLQGEIPEGGSFSNFSAQSFIGNEALCGSARLQVSPCKDDNSR 734

Query: 619 RTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSK---------TLRRFSYQD 669
            T     K +L  V+   +    ++A  + LK    R  K           T+RR SY +
Sbjct: 735 ATETPGSKIVLRYVLPAIVFAVFVLAFVIMLKRYCERKAKFSIEDDFLALTTIRRISYHE 794

Query: 670 LFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR 729
           L  AT  F + N +G+GSFGSVYKG L DG  +A KVF+     A KSF+ ECEV++N+R
Sbjct: 795 LQLATNGFQESNFLGMGSFGSVYKGTLSDGTVIAAKVFNLQLERAFKSFDTECEVLRNLR 854

Query: 730 HRNHVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLH 778
           HRN VK I+SCS  +FKAL             L+S +  LN   +LNIM+DVAS LEYLH
Sbjct: 855 HRNLVKIITSCSGPNFKALVLEFMPNWSLEKWLYSDDYFLNNLQRLNIMLDVASVLEYLH 914

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             ++ P+ HCD+KP NV           DFGI +LL  + S++QT TL TIGYMAP
Sbjct: 915 HGYTIPMAHCDIKPSNVLLNEDMVAFLADFGISKLLGEEGSVMQTMTLATIGYMAP 970

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 395/914 (43%), Positives = 515/914 (56%), Gaps = 130/914 (14%)

Query: 39  LLLYLVVAVA-AASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNS 97
           LL    V++A   +NI +DQ ALLALK  I  DP NLLA N +  TSVC W+G+TC    
Sbjct: 16  LLYSFFVSIADGVTNIASDQDALLALKVRIIRDPNNLLAANWSITTSVCTWVGVTCGARH 75

Query: 98  HRVTALNISSLNLQGTIPPQLGNLSSLT------------------------TLNLSHNK 133
            RVTAL++S + L GTIPP LGNLS L                            +S N 
Sbjct: 76  GRVTALDLSDMGLTGTIPPHLGNLSFLAFISFYNNRFHGSLPDELSKLRRIKAFGMSTNY 135

Query: 134 LSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFN--LSSVLDIRLDSDKLSGELPVNIC 191
            SG+IP  I +  +L+ L  S N+ +G L ++  N  +SS+  +   ++ L+G LP NI 
Sbjct: 136 FSGEIPSWIGSFTQLQRLSLSSNKFTGLLPAILANNTISSLWLLDFGTNNLTGRLPPNIF 195

Query: 192 NYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLR 251
            +L  L+ L+L  N+F+G IP  L  C++L+LL L F    G+I K+I NLT+L+++ L 
Sbjct: 196 THLANLRALYLNSNLFNGPIPSTLMACQQLKLLALSFNHFEGSIHKDIGNLTMLQELYLG 255

Query: 252 NNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGI 311
            N   G IP EIG L +LE ++L  N L G+VP+ I+N S +  I L  N L G   L  
Sbjct: 256 GNNFSGTIPDEIGDLAHLEEIILNVNGLSGLVPSGIYNASKMTAIGLALNQLSGY--LPS 313

Query: 312 DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------- 361
             +LPN+E   +  N F+G IP  + NASKL  +D+G NSF G IP+ +G          
Sbjct: 314 SSNLPNLEFFIIEDNNFTGPIPVSLFNASKLGNIDLGWNSFYGPIPDELGNLKSLEVFSF 373

Query: 362 ------------------------------LTGNPLDGVLPTSIGNLSMSLENIYISNCN 391
                                         L+ NPL+G LP S+GNLS SLE + I +C 
Sbjct: 374 WVNHLTVKSSSSGLSLFSSLTKCKHLRRFDLSNNPLNGNLPISVGNLSSSLEVVEIFDCG 433

Query: 392 IGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHL 451
           I G+IP+ I NLS+L  LDL  N L G+IP T  +L KLQ L L +N+L GS P +LC L
Sbjct: 434 ITGTIPKEIGNLSSLSWLDLGANDLRGTIPTTIRKLGKLQELKLHYNRLEGSFPYELCDL 493

Query: 452 ARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNS 511
             L  L L  N  SG IPSCLGN+ SLR+  +G N+ +S +PST W L DIL  +LSSNS
Sbjct: 494 QSLAYLYLEVNALSGQIPSCLGNVNSLRTLSMGMNKFSSTIPSTLWRLADILELNLSSNS 553

Query: 512 LDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG-- 569
           L G L++DIGNL+ V  I+LS N  SG IPS+IG LK L N+SLA N LEG IP+ FG  
Sbjct: 554 LSGSLAVDIGNLKAVTLIDLSGNQLSGHIPSSIGGLKTLLNLSLAVNRLEGSIPQLFGDA 613

Query: 570 -------------------------YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEK 604
                                    YLT  N+SFN+L+GEIP G  F N +AKSFMGN+ 
Sbjct: 614 ISLQLLDLSNNNLSGEIPKSLEELRYLTYFNVSFNELQGEIPNGRAFINLSAKSFMGNKG 673

Query: 605 LCGLPNLQFPKCKRRTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKS----- 659
           LCG   LQ   C+  T + SK    L +    ++T L I    A+    IR  K      
Sbjct: 674 LCGAAKLQVQPCETSTHQGSKAASKLALRYGLMATGLTILAVAAVAIIFIRSRKRNMRIT 733

Query: 660 ------KTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAM 713
                  TL+R SY++L +AT+KF++ NL+G GSFGSVYKG   DG  VA+KVF+     
Sbjct: 734 EGLLPLATLKRISYRELEQATDKFNEMNLLGRGSFGSVYKGTFSDGSSVAVKVFNLQVEG 793

Query: 714 ALKSFEAECEVMKNIRHRNHVKRISSCS--NEDFKAL-------DCLHSTNCS----LNI 760
           A KSF+ ECEV++ IRHRN VK I+SCS  N DFKAL         L    CS    L +
Sbjct: 794 AFKSFDVECEVLRMIRHRNLVKIITSCSDINIDFKALVLEFMPNYSLEKWLCSPKHFLEL 853

Query: 761 FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM 810
            ++LNIM+DVASA+EYLH  ++ P++HCDLKP N+           DFGI +LL  + S 
Sbjct: 854 LERLNIMLDVASAVEYLHHGYAMPIVHCDLKPSNILLDENMVAHVTDFGIAKLLGDEHSF 913

Query: 811 IQTETLVTIGYMAP 824
           IQT TL T+GYMAP
Sbjct: 914 IQTITLATVGYMAP 927

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 362/821 (44%), Positives = 480/821 (58%), Gaps = 100/821 (12%)

Query: 103  LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSL 162
            L++S     G IP  +G+LS+L TL L  N+L+G IP  I  +  L  L+ + + LSG +
Sbjct: 267  LDLSINQFTGFIPQAIGSLSNLETLYLGFNQLAGGIPGEIGNLSNLNLLNSASSGLSGPI 326

Query: 163  SSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQ 222
             +  FN+SS+ +I   ++ LSG LP++IC +L  L+ L L+ N   GQ+P  LS C  L 
Sbjct: 327  PAEIFNISSLQEIGFANNSLSGSLPMDICKHLPNLQWLLLSLNQLSGQLPTTLSLCGELL 386

Query: 223  LLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV 282
             L L +   +G+IP+EI NL+ L +I  R +   G IP E+G L NL+ L L  NNL G+
Sbjct: 387  TLTLAYNNFTGSIPREIGNLSKLEQIYFRRSSFTGNIPKELGNLVNLQFLSLNVNNLTGI 446

Query: 283  VPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKL 342
            VP AIFN+S ++ + L  N L GS    I   LPN+E+L +G N FSG IP  I+N S L
Sbjct: 447  VPEAIFNISKLQVLSLAGNHLSGSLPSSIGSWLPNLEQLLIGGNEFSGIIPMSISNMSNL 506

Query: 343  VYLDMGTNSFSGIIPNTIG----------------------------------------L 362
            + LD+  N F G +P  +G                                        +
Sbjct: 507  ISLDISDNFFIGNVPKDLGNLRQLQLLGLSHNQLTNEHSASELAFLTSLTNCIFLRTLSI 566

Query: 363  TGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV 422
            + NPL G++P S+GNLS+SLE IY S+C + G+IP  ISNL+NL+ L L+ N LTG IP 
Sbjct: 567  SDNPLKGMIPNSLGNLSISLEIIYASDCQLRGTIPTGISNLTNLIGLRLDDNDLTGLIPT 626

Query: 423  TFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPD 482
             FGRLQKLQ L +  N++ GSIP  LCHL  L  L L+ NK SG+IPSC GNLT LR+  
Sbjct: 627  PFGRLQKLQMLSISQNRIHGSIPSGLCHLTNLAFLDLSSNKLSGTIPSCSGNLTGLRNVY 686

Query: 483  LGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
            L SN L S +PS+  NL+ +L  +LSSN L+  L L +GN++ ++ ++LS+N FSG+IPS
Sbjct: 687  LHSNGLASEIPSSLCNLRGLLVLNLSSNFLNSQLPLQVGNMKSLVALDLSKNQFSGNIPS 746

Query: 543  TI------------------------GDLKDLQNISLACNGLEGLIP---ESFGYLTELN 575
            TI                        GDL  L+++ L+ N L G IP   E   YL  LN
Sbjct: 747  TISLLQNLLQLYLSHNKLQGHIPPNFGDLVSLESLDLSGNNLSGTIPKSLEHLKYLEYLN 806

Query: 576  LSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRRKSKKKMLLLVIVL 635
            +SFNKL+GEIP GGPFANFTA+SF+ N  LCG P  Q   C++ +R+ +K  +L  ++ L
Sbjct: 807  VSFNKLQGEIPNGGPFANFTAESFISNLALCGAPRFQVMACEKDSRKNTKSLLLKCIVPL 866

Query: 636  PLSTALIIAVPLALKYKSIRGGKSKT-----------LRRFSYQDLFRATEKFSKENLIG 684
             +S + II V L +++K  R  KS+T            R   +Q+L  AT  F ++NLIG
Sbjct: 867  SVSLSTIILVVLFVQWKR-RQTKSETPIQVDLSLPRMHRMIPHQELLYATNYFGEDNLIG 925

Query: 685  VGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED 744
             GS G VYKG L DG+ VA+KVF+     A KSFE ECEVM+NIRHRN  K ISSCSN D
Sbjct: 926  KGSLGMVYKGVLSDGLIVAVKVFNLELQGAFKSFEVECEVMRNIRHRNLAKIISSCSNLD 985

Query: 745  FKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPK 793
            FKAL             L+S N  L+   +L IMIDVAS LEYLH  +S PV+HCDLKP 
Sbjct: 986  FKALVLEYMPNGSLEKWLYSHNYYLDFVQRLKIMIDVASGLEYLHHYYSNPVVHCDLKPS 1045

Query: 794  NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            NV           DFGI +LL G   M +T+TL T+GYMAP
Sbjct: 1046 NVLLDDDMVAHISDFGIAKLLMGSEFMKRTKTLGTVGYMAP 1086

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465016|ref|XP_004150225.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 377/977 (38%), Positives = 527/977 (53%), Gaps = 197/977 (20%)

Query: 47  VAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNIS 106
           +A A NITTDQ ALLAL+AHI+ DP  +   N ++ TSVCNW+GI C V   RVT+LN S
Sbjct: 1   MAFAQNITTDQAALLALRAHITSDPFGITTNNWSATTSVCNWVGIICGVKHKRVTSLNFS 60

Query: 107 SLNLQGTIPPQLGNLSSLT------------------------TLNLSHNKLSGDIPPSI 142
            + L GT PP++G LS LT                         ++L +N  SG+IP  I
Sbjct: 61  FMGLTGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTNLPRLKMMSLGNNNFSGEIPTWI 120

Query: 143 FTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNY--------- 193
             + +++ L    NQ SG + +  FNL+S++ + L  ++LSG +P  I N          
Sbjct: 121 GRLPRMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQENQLSGSIPREIGNLTLLQDLYLN 180

Query: 194 -------------LHYLKVLFLAKNMFHGQIPL--------------------------- 213
                        L  L+ L +  N+F G IPL                           
Sbjct: 181 SNQLTEIPTEIGTLQSLRTLDIEFNLFSGPIPLFIFNLSSLVILGLSGNNFIGGLPDDIC 240

Query: 214 ----------------------ALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLR 251
                                  L KC+ L+ + L + + +G+IP+ + NLT +++I L 
Sbjct: 241 EDLPSLGGLYLSYNQLSGQLPSTLWKCENLEDVALAYNQFTGSIPRNVGNLTRVKQIFLG 300

Query: 252 NNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGI 311
            N L GEIP+E+GYL NLE L +  N   G +P  IFN+S +  I L+ N L G+    +
Sbjct: 301 VNYLSGEIPYELGYLQNLEYLAMQENFFNGTIPPTIFNLSKLNTIALVKNQLSGTLPADL 360

Query: 312 DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------- 361
            + LPN+ +L LG N  +GTIP  ITN+S L   D+G NSFSG+IPN  G          
Sbjct: 361 GVGLPNLVQLMLGRNELTGTIPESITNSSMLTLFDVGDNSFSGLIPNVFGRFENLRWINL 420

Query: 362 ------------------------------LTGNPLDGVLPTSIGNLSMSLENIYISNCN 391
                                         L+ NPL+  LP+S  N S S + + + N  
Sbjct: 421 ELNNFTTESPPSERGIFSFLTNLTSLVRLELSHNPLNIFLPSSFVNFSSSFQYLSMVNTG 480

Query: 392 IGGSIPQLISN-LSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCH 450
           I G IP+ I N L +L++L ++ N++TG+IP + G+L++LQGL+L  N L G+IP ++C 
Sbjct: 481 IKGMIPKDIGNFLRSLIVLVMDDNQITGTIPTSIGKLKQLQGLHLSNNSLEGNIPAEICQ 540

Query: 451 LARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN 510
           L  L+ L LA NK SG+IP C  NL++LR+  LGSN L S +PS+ W+L  IL  +LSSN
Sbjct: 541 LENLDELYLANNKLSGAIPECFDNLSALRTLSLGSNNLNSTMPSSLWSLSYILHLNLSSN 600

Query: 511 SLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG- 569
           SL G L ++IGNL VV+ I++S+N  SG+IPS+IG L +L N+SL  N LEG IP+SFG 
Sbjct: 601 SLRGSLPVEIGNLEVVLDIDVSKNQLSGEIPSSIGGLINLVNLSLLHNELEGSIPDSFGN 660

Query: 570 --------------------------YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNE 603
                                     +L + N+SFN+LEGEIP GGPF+NF+A+SF+ N 
Sbjct: 661 LVNLEILDLSSNNLTGVIPRSLEKLSHLEQFNVSFNQLEGEIPNGGPFSNFSAQSFISNI 720

Query: 604 KLCGLPN-LQFPKCKRRTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTL 662
            LC   +  Q   C  +T + S +K   LV +LP     ++++ L L + + R  K + +
Sbjct: 721 GLCSASSRFQVAPCTTKTSQGSGRKTNKLVYILPSILLAMLSLILLLLFMTYRHRKKEQV 780

Query: 663 ------------RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN 710
                       RR +YQ+L +AT+ FS+ NLIG GSFGSVYK  L DG   A+K+F   
Sbjct: 781 REDTPLPYQPAWRRTTYQELSQATDGFSESNLIGRGSFGSVYKATLSDGTIAAVKIFDLL 840

Query: 711 CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCSLN 759
              A KSFE ECE++ NIRHRN VK I+SCS+ DFKAL             L++ +C LN
Sbjct: 841 TQDANKSFELECEILCNIRHRNLVKIITSCSSVDFKALILEYMPNGNLDMWLYNHDCGLN 900

Query: 760 IFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS 809
           + ++L+I+IDVA AL+YLH  +  P++HCDLKP N+           DFGI +LL G  S
Sbjct: 901 MLERLDIVIDVALALDYLHNGYGKPIVHCDLKPNNILLDGDMVAHLTDFGISKLLGGGDS 960

Query: 810 MIQTETLVTIGYMAPGL 826
           + QT TL T+GYMAP L
Sbjct: 961 ITQTITLATVGYMAPEL 977

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 368/857 (42%), Positives = 480/857 (56%), Gaps = 131/857 (15%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
           N   +  LN+    ++G I  ++ NLS+L  L+L HN  SG I P +F M  L+ ++   
Sbjct: 86  NVTALETLNLEGNFIEGNISEEIRNLSNLKILDLGHNHFSGVISPILFNMPSLRLINLRA 145

Query: 156 NQLSGSLSSVTF--NLSSVLDI-------------------------RLDSDKLSGELPV 188
           N LSG L  V    N+ S L++                          L+S++ +G +P 
Sbjct: 146 NSLSGILQVVMIMSNIPSTLEVLNLGYNQLHGRIPSNLHKCTELRVLDLESNRFTGSIPK 205

Query: 189 NICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKI 248
            IC  L  LK L+L KN   GQIP  +++   L+ L L    L+G IP+EI N T L +I
Sbjct: 206 EICT-LTKLKELYLGKNNLTGQIPGEIARLVSLEKLGLEVNGLNGNIPREIGNCTYLMEI 264

Query: 249 SLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFS 308
            + NN L G IP+E+G L  L+ L LGFNN+ G +P+  FN S ++++ +  N L G   
Sbjct: 265 HVENNNLTGVIPNEMGNLHTLQELDLGFNNITGSIPSTFFNFSILRRVNMAYNYLSGHLP 324

Query: 309 LGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG------- 361
               L LPN+E L L  N  SG IP  I NASKL+ LD+  NSFSG IP+ +G       
Sbjct: 325 SNTGLGLPNLEELYLEKNELSGPIPDSIGNASKLIVLDLSYNSFSGRIPDLLGNLRNLQK 384

Query: 362 ---------------------------------LTGNPLDGVLPTSIGNLSMSLENIYIS 388
                                              GNPL G LP SIGNLS SLE +Y  
Sbjct: 385 LNLAENILTSKSLRSELSFLSSLSNCRSLAYLRFNGNPLRGRLPVSIGNLSASLEELYAF 444

Query: 389 NCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQL 448
           +C I G+IP+ I NLSNL+ L L+ N+LTG+IP   GRL+ LQ   L  NKL G IP+++
Sbjct: 445 DCRIIGNIPRGIGNLSNLIGLILQQNELTGAIPSEIGRLKHLQDFSLASNKLQGHIPNEI 504

Query: 449 CHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLS 508
           CHL RL+ L L  N FSGS+P+CL N+TSLR   LGSNR TS+ P+TFW+LKD+L  +LS
Sbjct: 505 CHLERLSYLYLLENGFSGSLPACLSNITSLRELYLGSNRFTSI-PTTFWSLKDLLQINLS 563

Query: 509 SNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF 568
            NSL G L L+IGNL+VV  I+ S N  SGDIP++I DL++L + SL+ N ++G IP SF
Sbjct: 564 FNSLTGTLPLEIGNLKVVTVIDFSSNQLSGDIPTSIADLQNLAHFSLSDNRMQGPIPSSF 623

Query: 569 G---------------------------YLTELNLSFNKLEGEIPRGGPFANFTAKSFMG 601
           G                           +L   N+SFN+L+GEI  GGPFANF+ +SFM 
Sbjct: 624 GDLVSLEFLDLSRNSLSGAIPKSLEKLVHLKTFNVSFNRLQGEILDGGPFANFSFRSFMD 683

Query: 602 NEKLCGLPNLQFPKCKR-RTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSK 660
           NE LCG   +Q P CK   T R+SK+    ++  +  + A II V LAL     R    +
Sbjct: 684 NEALCGPIRMQVPPCKSISTHRQSKRPREFVIRYIVPAIAFIILV-LALAVIIFRRSHKR 742

Query: 661 ------------TLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFH 708
                       T R+ SY +L+RATE F++ NL+G GS GSVYKG L DG+ +A+KVFH
Sbjct: 743 KLSTQEDPLPPATWRKISYHELYRATEGFNETNLLGTGSCGSVYKGTLSDGLCIAVKVFH 802

Query: 709 QNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCS 757
                 L  F++ECEV++ +RHRN VK ISSC N DFKAL             L+S N  
Sbjct: 803 LQLEGELMRFDSECEVLRMLRHRNLVKIISSCCNLDFKALILEFIPHGSLEKWLYSHNYY 862

Query: 758 LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD 807
           L+I  +LNIMIDVASALEYLH   + PV+HCDLKP NV           DFGI RLL   
Sbjct: 863 LDILQRLNIMIDVASALEYLHHGCTRPVVHCDLKPSNVLINEDMVAHVSDFGISRLLGEG 922

Query: 808 RSMIQTETLVTIGYMAP 824
            ++ QT TL TIGYMAP
Sbjct: 923 DAVTQTLTLATIGYMAP 939

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204751|emb|CBI25249.3| unnamed protein product [Vitis vinifera]

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 393/921 (42%), Positives = 506/921 (54%), Gaps = 179/921 (19%)

Query: 45   VAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALN 104
              VA + +  TDQ +LLALKAHI+ DP ++LA N ++ TS C WIG++CN    RV AL+
Sbjct: 496  ACVAMSLSNFTDQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWIGVSCNAQQQRVIALD 555

Query: 105  ISSLNLQGTIPPQLGNLSSLTTLNLS------------------------HNKLSGDIPP 140
            +S+L L+GTIPP LGNLS L +L+LS                        +N  +G IPP
Sbjct: 556  LSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPIPPSFGNLNRLQSLFLGNNSFTGTIPP 615

Query: 141  SIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVL 200
            SI  M  L+ LD   NQL G++ S  FN+SS+ +I L  + LSG +P  I ++L  L+ L
Sbjct: 616  SIGNMSMLETLDIQSNQLVGAIPSAIFNISSLQEIALTYNSLSGTIPEEI-SFLPSLEYL 674

Query: 201  FLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI--------------------- 239
            +L  N F   IP A+ K   L+ ++LG    SG++P +I                     
Sbjct: 675  YLRSNSFTSPIPSAIFKISTLKAIDLGKNGFSGSMPLDIMCAHRPSLQLIGLDSNRFTGT 734

Query: 240  -----SNLTILRKISLRNNKLR-GEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTV 293
                  N T LR++ L +N L  GE+P EIG L  L  L +  N+L G +P  IFN+S++
Sbjct: 735  IHGGIGNCTSLRELYLSSNDLTAGEVPCEIGSLCTLNVLNIEDNSLTGHIPFQIFNISSM 794

Query: 294  KKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFS 353
                L  N+L G+        LPN+E L L +N  SG IPS I NASKL  LD G N  +
Sbjct: 795  VSGSLTRNNLSGNLPPNFGSYLPNLENLILEINWLSGIIPSSIGNASKLRSLDFGYNMLT 854

Query: 354  GIIPNTIG----------------------------------------LTGNPLDGVLPT 373
            G IP+ +G                                        L+ NPL G+LP 
Sbjct: 855  GSIPHALGSLRFLERLNLGVNNLKGESYIQELSFLTSLTNCKRLRILYLSFNPLIGILPI 914

Query: 374  SIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGL 433
            SIGNLS SL+    + C + G+IP  I NLSNL LL L  N LTG+IP + G+LQKLQGL
Sbjct: 915  SIGNLSTSLQRFEANTCKLKGNIPTEIGNLSNLYLLSLNNNDLTGTIPPSIGQLQKLQGL 974

Query: 434  YLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP 493
            YLP NKL GSIP+ +C L  L  L L  N+ SGSIP+CLG LT LR   LGSN+L S +P
Sbjct: 975  YLPSNKLQGSIPNDICQLRNLGELFLTNNQLSGSIPACLGELTFLRHLYLGSNKLNSTIP 1034

Query: 494  STFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNI 553
            ST W+L  IL  D+SSN L G L  D+GNL+V++ I+LSRN  SG+IPS IG L+DL ++
Sbjct: 1035 STLWSLIHILSLDMSSNFLVGYLPSDMGNLKVLVKIDLSRNQLSGEIPSNIGGLQDLTSL 1094

Query: 554  SLACNGLEGLIPESFG---------------------------YLTELNLSFNKLEGEIP 586
            SLA N  EG I  SF                            YL  L++SFN L GEIP
Sbjct: 1095 SLAHNRFEGPILHSFSNLKSLEFMDLSDNALFGEIPKSLEGLVYLKYLDVSFNGLYGEIP 1154

Query: 587  RGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRRKSKKKMLLLVIVLPLSTALIIAVP 646
              GPFANF+A+SFM N+ LC              R+++         VLP  +  ++   
Sbjct: 1155 PEGPFANFSAESFMMNKALC--------------RKRNA--------VLPTQSESLL--- 1189

Query: 647  LALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKV 706
                        + T RR SYQ++F+AT  FS  NL+G GS GSVY+G L DG   AIKV
Sbjct: 1190 ------------TATWRRISYQEIFQATNGFSAGNLLGRGSLGSVYRGTLSDGKNAAIKV 1237

Query: 707  FHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKAL-----------DCLHS 753
            F+     A KSF+AECEVM +IRHRN +K +SSCSN   DFKAL             L+S
Sbjct: 1238 FNLQEEAAFKSFDAECEVMHHIRHRNLIKIVSSCSNSYIDFKALVLEYVPNGSLERWLYS 1297

Query: 754  TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL 803
             N  L+I  +LNIMIDVA A+EYLH   STPV+HCDLKP N+           DFGI +L
Sbjct: 1298 HNYCLDILQRLNIMIDVALAMEYLHHGCSTPVVHCDLKPSNILLDEDFGGHVGDFGIAKL 1357

Query: 804  LTGDRSMIQTETLVTIGYMAP 824
            L  + S+ +T+TL TIGYMAP
Sbjct: 1358 LREEESIRETQTLATIGYMAP 1378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/826 (42%), Positives = 470/826 (56%), Gaps = 100/826 (12%)

Query: 98   HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQ 157
             ++  L++S     G IP  +G+LS+L  + L++N L+G IP  I  +  L  L      
Sbjct: 263  RQLRGLSLSLNQFTGGIPQAIGSLSNLEEVYLAYNNLAGGIPREIGNLSNLNSLQLGSCG 322

Query: 158  LSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSK 217
            +SG +    FN+SS+  I L  + L G LP++IC +LH L+ L+L+ N   GQ+P  LS 
Sbjct: 323  ISGPIPPEIFNISSLQMIDLTDNSLHGSLPMDICKHLHNLQGLYLSFNQLSGQLPTTLSL 382

Query: 218  CKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN 277
            C +L  L+L   + +G IP    NLT+L+ + L  N ++G IP+E+G L NL+NL L  N
Sbjct: 383  CGQLLSLSLWGNRFTGNIPPSFGNLTVLQDLELXENNIQGNIPNELGNLINLQNLKLSVN 442

Query: 278  NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFIT 337
            NL G++P AIFN+S ++ + L  N   GS    I   LP++E L +G N FSG IP  I+
Sbjct: 443  NLTGIIPEAIFNISKLQTLXLAQNHFSGSLPSSIGTQLPDLEGLAIGXNEFSGIIPMSIS 502

Query: 338  NASKLVYLDMGTNSFSGIIPNTIG------------------------------------ 361
            N S+L  LD+  N F+G +P  +G                                    
Sbjct: 503  NMSELTVLDIWANFFTGDVPKDLGNLRRLEFLNLGFNQLTDEHSTSEVGFLTSLTNCKFL 562

Query: 362  ----LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT 417
                +  NPL G+LP S+GNLS+SLE+   S C   G+IP  I NL NL+ L L  N LT
Sbjct: 563  RRLWIEDNPLKGILPNSLGNLSISLESFDASACQFKGTIPTGIGNLINLIDLRLNDNDLT 622

Query: 418  GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTS 477
            G IP++FG LQKLQ   +  N++ GSIP  LCHL  L  L L+ NK SG+IP C GNLT+
Sbjct: 623  GLIPISFGHLQKLQWFAISGNRIHGSIPSVLCHLRNLGYLDLSSNKLSGTIPGCFGNLTA 682

Query: 478  LRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFS 537
            LR+  L SN L S +PS+ W L+D+L  +LSSN L+  L L++GN++ ++ ++LS+N FS
Sbjct: 683  LRNISLHSNGLASEIPSSLWTLRDLLVLNLSSNFLNCQLPLEVGNMKSLLVLDLSKNQFS 742

Query: 538  GDIPSTI------------------------GDLKDLQNISLACNGLEGLIP---ESFGY 570
            G+IPSTI                        G L  L+ + L+ N   G IP   E+  Y
Sbjct: 743  GNIPSTISLLQNLLQLYLSHNKLQGHMPPNFGALVSLEYLDLSGNNFSGTIPTSLEALKY 802

Query: 571  LTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRTRRKSKKKMLL 630
            L  LN+SFNKL+GEIP  GPFANFTA+SF+ N  LCG P  Q   C++  RR +K  +L 
Sbjct: 803  LKYLNVSFNKLQGEIPNRGPFANFTAESFISNLALCGAPRFQVMACEKDARRNTKSLLLK 862

Query: 631  LVIVLPLSTALIIAVPLALKYKSIRGGKSKT-----------LRRFSYQDLFRATEKFSK 679
             ++ L +S + +I V L   +K  R  +S++            R  S+Q+L  AT  F +
Sbjct: 863  CIVPLSVSLSTMILVVLFTLWKR-RQTESESPVQVDLLLPRMHRLISHQELLYATSYFGE 921

Query: 680  ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISS 739
            ENLIG GS G VYKG L DG+ VA+KVF+     A KSFE ECEVM+NIRHRN  K ISS
Sbjct: 922  ENLIGKGSLGMVYKGVLSDGLIVAVKVFNLELHGAFKSFEVECEVMRNIRHRNLAKIISS 981

Query: 740  CSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHC 788
            CSN DFKAL             L+S N  L+   +L IMIDVAS LEYLH  +S PV+HC
Sbjct: 982  CSNLDFKALVLEYMPNESLEKWLYSHNYCLDFIQRLKIMIDVASGLEYLHHDYSNPVVHC 1041

Query: 789  DLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            DLKP NV           DFGI +LL G   M +T+TL TIGYMAP
Sbjct: 1042 DLKPSNVLLDDDMVAHISDFGIAKLLMGSEFMKRTKTLGTIGYMAP 1087

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 354/812 (43%), Positives = 462/812 (56%), Gaps = 99/812 (12%)

Query: 112  GTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSS 171
            G IP  +G+L +L  L L+ NKL+G IP  I  +  L  L    N +SG + +  FN+SS
Sbjct: 282  GGIPQAIGSLCNLEELYLAFNKLTGGIPREIGNLSNLNILQLGSNGISGPIPAEIFNISS 341

Query: 172  VLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKL 231
            +  I   ++ LSG LP+ IC +L  L+ L+LA+N   GQ+P  LS C  L  L+L F K 
Sbjct: 342  LQVIDFTNNSLSGSLPMGICKHLPNLQGLYLAQNHLSGQLPTTLSLCGELLFLSLSFNKF 401

Query: 232  SGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMS 291
             G+IP+EI NL+ L  I LR+N L G IP   G L  L+ L LG N L G VP AIFN+S
Sbjct: 402  RGSIPREIGNLSKLEHIDLRSNSLVGSIPTSFGNLKALKFLNLGINFLTGTVPEAIFNIS 461

Query: 292  TVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNS 351
             ++ + L+ N L GS    I   LP++E L +G N FSGTIP  I+N SKL  L +  NS
Sbjct: 462  ELQNLALVQNHLSGSLPSSIGTWLPDLEGLYIGANEFSGTIPMSISNMSKLTVLSLSDNS 521

Query: 352  FSGIIPNTI-----------------------------GLTG-----------NPLDGVL 371
            F+G +P  +                              LT            NPL G L
Sbjct: 522  FTGNVPKDLCNLTKLKFLNLAHNQLTDEHLASGVGFLTSLTNCKFLRYLWIGYNPLKGTL 581

Query: 372  PTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQ 431
            P S+GNL ++LE+     C   G+IP  I NL+NL+ LDL  N LTGSIP T GRLQKLQ
Sbjct: 582  PNSLGNLPIALESFTAYACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGRLQKLQ 641

Query: 432  GLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
             L++  N++ GSIP+ LCHL  L  LGL+ NK SGS PSC G+L +LR   L SN L   
Sbjct: 642  RLHIAGNRIRGSIPNDLCHLKNLGYLGLSSNKLSGSTPSCFGDLLALRELFLDSNALAFN 701

Query: 492  LPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQ 551
            +P++ W+L+D+L  +LSSN L G L  ++GN++ +  ++LS+N  SG IPS +G L+ L 
Sbjct: 702  IPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPSRMGKLQYLI 761

Query: 552  NISLACNGLEGLIPESFG---------------------------YLTELNLSFNKLEGE 584
             +SL+ N L+G I   FG                           YL  LN+SFNKL+GE
Sbjct: 762  TLSLSQNRLQGPIXVEFGDLVSLESLDLSHNNLSGTIPKSLEALIYLKYLNVSFNKLQGE 821

Query: 585  IPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKR--RTRRKSKKKMLLLVIVLPLSTALI 642
            IP GGPF  FTA+SFM NE LCG P+ Q   C +  RT+    K  +L  I+LP+ + + 
Sbjct: 822  IPNGGPFVKFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSFILKYILLPVGSTVT 881

Query: 643  IAVPLALKYKS---------IRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYK 693
            + V + L  +          I      T  + S+Q L  AT  F ++NLIG GS G VYK
Sbjct: 882  LVVFIVLWIRRRDNMEIPTPIDSWLLGTHEKISHQQLLYATNDFGEDNLIGKGSQGMVYK 941

Query: 694  GRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL----- 748
            G L +G+ VAIKVF+     AL+SF++ECEVM+ IRHRN V+ I+ CSN DFKAL     
Sbjct: 942  GVLSNGLNVAIKVFNLEFQGALRSFDSECEVMQGIRHRNLVRIITCCSNLDFKALVLEYM 1001

Query: 749  ------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------ 796
                    L+S N  L++  +LNIMIDVASALEYLH   S+ V+HCDLKP NV       
Sbjct: 1002 PNGSLEKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCSSLVVHCDLKPSNVLLDDDMV 1061

Query: 797  ----DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
                DFGI +LLT   SM QT+TL TIGYMAP
Sbjct: 1062 AHVADFGIAKLLTETESMQQTKTLGTIGYMAP 1093

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	827
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.652	0.534	0.297	3.8e-89
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.766	0.618	0.316	8.1e-87
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.642	0.515	0.281	1.2e-84
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.841	0.710	0.301	1.7e-84
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.675	0.446	0.305	6.8e-83
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.640	0.424	0.313	6.2e-81
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.880	0.752	0.285	3e-74
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.834	0.588	0.273	1.1e-72
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.754	0.767	0.310	3.2e-72
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.651	0.474	0.314	1.6e-71

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 3.8e-89, Sum P(3) = 3.8e-89
 Identities = 168/564 (29%), Positives = 270/564 (47%)

Query:    55 TDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTI 114
             TD+QALL  K+ +S D   +L+  + S   +CNW G+TC   + RVT L +  L L G I
Sbjct:    24 TDRQALLQFKSQVSEDKRVVLSSWNHS-FPLCNWKGVTCGRKNKRVTHLELGRLQLGGVI 82

Query:   115 PPQXXXXXXXXXXXXXXXXXXGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLD 174
              P                   G IP  +  + +L++LD   N L G +    +N S +L+
Sbjct:    83 SPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLN 142

Query:   175 IRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGA 234
             +RLDS++L G +P  + +  + +++     NM  G++P +L     L+ L L    L G 
Sbjct:   143 LRLDSNRLGGSVPSELGSLTNLVQLNLYGNNM-RGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query:   235 IPKEISNLTILRKISLRNNKLRGEIPHEIGYLPXXXXXXXXXXXXXXXX-PAAIFNMSTV 293
             IP +++ LT +  + L  N   G  P  +  L                  P     +  +
Sbjct:   202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query:   294 KKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSF--ITNASKLVYL---DMG 348
                 +  N   GS    +  ++  +ERL +  N  +G+IP+F  + N  KL++L    +G
Sbjct:   262 LSFNMGGNYFTGSIPTTLS-NISTLERLGMNENNLTGSIPTFGNVPNL-KLLFLHTNSLG 319

Query:   349 TNS-----FSGIIPN-----TIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQ 398
             ++S     F   + N     T+G+  N L G LP SI NLS  L  + +    I GSIP 
Sbjct:   320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPY 379

Query:   399 XXXXXXXXXXXXXEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLG 458
                          + N L+G +P + G+L  L+ L L  N+L+G IP  + ++  L TL 
Sbjct:   380 DIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLD 439

Query:   459 LAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSL 518
             L+ N F G +P+ LGN + L    +G N+L   +P     ++ +L  D+S NSL G L  
Sbjct:   440 LSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQ 499

Query:   519 DIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYL--TELNL 576
             DIG L+ +  ++L  N  SG +P T+G+   ++++ L  N   G IP+  G +   E++L
Sbjct:   500 DIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKGLVGVKEVDL 559

Query:   577 SFNKLEGEIPRGGPFANFTAKSFM 600
             S N L G IP    FA+F+   ++
Sbjct:   560 SNNDLSGSIPEY--FASFSKLEYL 581

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 746 (267.7 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
 Identities = 213/673 (31%), Positives = 322/673 (47%)

Query:    99 RVTALNISSLNLQGTIPPQXXXXXXXXXXXXXXXXXXGDIPPSI-FTMHKLKFLDFSDNQ 157
             R+  L +S  ++QG+IP                    G IP  I  ++  L  L    N 
Sbjct:   128 RLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNG 187

Query:   158 LSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSK 217
             LSG + S   NL+S+ +  L  ++LSG +P ++   L  L  + L +N   G IP ++  
Sbjct:   188 LSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSL-GQLSSLLTMNLGQNNLSGMIPNSIWN 246

Query:   218 CKRLQLLNLGFKKLSGAIPKE-ISNLTILRKISLRNNKLRGEIPHEIGYLPXXXXXXXXX 276
                L+  ++   KL G IP      L +L  I +  N+  G+IP  +             
Sbjct:   247 LSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYG 306

Query:   277 XXXXXXXPAAIFNMSTVKKIYLLDN--SLLGSFSLGIDLSLPN---VERLNLGLNRFSGT 331
                     +    +  + ++YL  N          G    L N   ++ LNLG N   G 
Sbjct:   307 NLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGV 366

Query:   332 IPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCN 391
             +P+  +N S  +       SF       + L  N + G +P  IGNL + L+++Y+ N N
Sbjct:   367 LPNSFSNLSTSL-------SF-------LALELNKITGSIPKDIGNL-IGLQHLYLCNNN 411

Query:   392 IGGSIPQXXXXXXXXXXXXXEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHL 451
               GS+P                N L+GSIP+  G L +L  L L  NK +G IP  L +L
Sbjct:   412 FRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNL 471

Query:   452 ARLNTLGLAGNKFSGSIPSCLGNLTSLRSP-DLGSNRLTSVLPSTFWNLKDILFFDLSSN 510
               L +LGL+ N  SG IPS L N+ +L    ++  N L   +P    +LK+++ F   SN
Sbjct:   472 TNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLVEFHAESN 531

Query:   511 SLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY 570
              L G +   +G+ +++  + L  N  SG IPS +G LK L+ + L+ N L G IP S   
Sbjct:   532 RLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQIPTSLAD 591

Query:   571 LT---ELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCG-LPNLQFPXXXXXXXXXXXX 626
             +T    LNLSFN   GE+P  G FA  +  S  GN KLCG +P+L  P            
Sbjct:   592 ITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIPDLHLPRCCPLLENRKHF 651

Query:   627 XMLLLVIVLPLSTALIIAVPLALKY--KSIRGGKSKTLRR----FSYQDLFRATEKFSKE 680
              +L + + L  + A++ ++ L + +  ++ +G  S+T  +     SY  L +AT+ F+  
Sbjct:   652 PVLPISVSLAAALAILSSLYLLITWHKRTKKGAPSRTSMKGHPLVSYSQLVKATDGFAPT 711

Query:   681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
             NL+G GSFGSVYKG+L+    VA+KV       ALKSF AECE ++N+RHRN VK ++ C
Sbjct:   712 NLLGSGSFGSVYKGKLNIQDHVAVKVLKLENPKALKSFTAECEALRNMRHRNLVKIVTIC 771

Query:   741 SN-----EDFKAL 748
             S+      DFKA+
Sbjct:   772 SSIDNRGNDFKAI 784

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 1.2e-84, Sum P(3) = 1.2e-84
 Identities = 155/551 (28%), Positives = 248/551 (45%)

Query:    55 TDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTI 114
             TD QALL  K+ +S +    +  +   ++  CNWIG+TC     RV +LN+    L G I
Sbjct:    30 TDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVI 89

Query:   115 PPQXXXXXXXXXXXXXXXXXXGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLD 174
              P                     IP  +  + +L++L+ S N L G + S   N S +  
Sbjct:    90 SPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLST 149

Query:   175 IRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGA 234
             + L S+ L   +P  + + L  L +L L+KN   G  P +L     LQ L+  + ++ G 
Sbjct:   150 VDLSSNHLGHGVPSELGS-LSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208

Query:   235 IPKEISNLTILRKISLRNNKLRGEIPHEIGYLPXXXXXXXXXXXXXXXXPAAI-FNMSTV 293
             IP E++ LT +    +  N   G  P  +  +                  A   + +  +
Sbjct:   209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNL 268

Query:   294 KKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYL-----DMG 348
             +++ L  N   G+    +  ++ ++ER ++  N  SG+IP        L +L      +G
Sbjct:   269 RRLLLGTNQFTGAIPKTL-ANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLG 327

Query:   349 TNSFSGI-----IPNTIGL----TG-NPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQ 398
              NS SG+     + N   L     G N L G LP SI NLS +L ++++    I G+IP 
Sbjct:   328 NNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPH 387

Query:   399 XXXXXXXXXXXXXEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLG 458
                          E N L+G +PV+FG+L  LQ + L  N ++G IP    ++ RL  L 
Sbjct:   388 DIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLH 447

Query:   459 LAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSL 518
             L  N F G IP  LG    L    + +NRL   +P     +  + + DLS+N L G    
Sbjct:   448 LNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPE 507

Query:   519 DIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSF 578
             ++G L +++G+  S N  SG +P  IG    ++ + +  N  +G IP+    ++  N+ F
Sbjct:   508 EVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPDISRLVSLKNVDF 567

Query:   579 --NKLEGEIPR 587
               N L G IPR
Sbjct:   568 SNNNLSGRIPR 578

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 234/775 (30%), Positives = 355/775 (45%)

Query:    76 AQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQXXXXXXXXXXXXXXXXXX 135
             + +S+    VCNW G+ CN  S +V  L+IS  +L G I P                   
Sbjct:    44 SSSSSMLVDVCNWSGVKCNKESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFV 103

Query:   136 GDIPPSIFTMHK-LKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNI-CN- 192
             G IPP I ++H+ LK L  S+N L G++      L+ ++ + L S++L+G +PV + CN 
Sbjct:   104 GKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNG 163

Query:   193 YLHYLKVLFLAKNMFHGQIPLALSKC--KRLQLLNLGFKKLSGAIPKEISNLTILRKISL 250
                 L+ + L+ N   G+IPL    C  K L+ L L   KL+G +P  +SN T L+ + L
Sbjct:   164 SSSSLQYIDLSNNSLTGEIPLNYH-CHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDL 222

Query:   251 RNNKLRGEIPHEI-------GYLPXXXXXXXXXXXXXXXXP--AAIFNMSTVKKIYLLDN 301
              +N L GE+P ++        +L                 P  A++ N S ++++ L  N
Sbjct:   223 ESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGN 282

Query:   302 SLLGSFSLGI-DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT- 359
             SL G  +  +  LS+ N+ +++L  NR  G+IP  I+N   L  L++ +N  SG IP   
Sbjct:   283 SLGGEITSSVRHLSV-NLVQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPREL 341

Query:   360 --------IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQXXXXXXXXXXXXX 411
                     + L+ N L G +P  +G++   L  + +S  N+ GSIP              
Sbjct:   342 CKLSKLERVYLSNNHLTGEIPMELGDIPR-LGLLDVSRNNLSGSIPDSFGNLSQLRRLLL 400

Query:   412 EGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP-DQLCHLARLNT-LGLAGNKFSGSIP 469
              GN L+G++P + G+   L+ L L  N L G+IP + + +L  L   L L+ N  SG IP
Sbjct:   401 YGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIP 460

Query:   470 SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGI 529
               L  +  + S DL SN L+  +P    +   +   +LS N     L   +G L  +  +
Sbjct:   461 LELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKEL 520

Query:   530 NLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGG 589
             ++S N  +G IP +       Q  S                L  LN SFN L G +   G
Sbjct:   521 DVSFNRLTGAIPPSF------QQSST---------------LKHLNFSFNLLSGNVSDKG 559

Query:   590 PFANFTAKSFMGNEKLCG-LPNLQ-------FPXXXXXXXXXXXXXMLLLVIVLPLSTAL 641
              F+  T +SF+G+  LCG +  +Q       +P              +L V   PL    
Sbjct:   560 SFSKLTIESFLGDSLLCGSIKGMQACKKKHKYPSVLLPVLLSLIATPVLCVFGYPLVQRS 619

Query:   642 IIAVPLALKYKSIRGGKSKTLR------RFSYQDLFRATEKFSKENLIGVGSFGSVYKGR 695
                  L +  K     + K  +      R SYQ L  AT  F+  +LIG G FG VYKG 
Sbjct:   620 RFGKNLTVYAKEEVEDEEKQNQNDPKYPRISYQQLIAATGGFNASSLIGSGRFGHVYKGV 679

Query:   696 LHDGIEVAIKVFHQNCAMALK-SFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST 754
             L +  +VA+KV     A+    SF+ EC+++K  RHRN ++ I++CS   F AL      
Sbjct:   680 LRNNTKVAVKVLDPKTALEFSGSFKRECQILKRTRHRNLIRIITTCSKPGFNALVLPLMP 739

Query:   755 NCSL--------------NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNV 795
             N SL              ++   +NI  DVA  + YLH      V+HCDLKP N+
Sbjct:   740 NGSLERHLYPGEYSSKNLDLIQLVNICSDVAEGIAYLHHYSPVKVVHCDLKPSNI 794

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 6.8e-83, Sum P(3) = 6.8e-83
 Identities = 180/589 (30%), Positives = 291/589 (49%)

Query:    93 CNVNSHRVTALNISSLNLQGTIPPQXXXXXXXXXXXXXXXXXXGDIPPSIFTMHKLKFLD 152
             C+ N+  +  L +S   L G IP +                  G IP S+F + +L  L 
Sbjct:   333 CS-NNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLY 391

Query:   153 FSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIP 212
              ++N L G+LSS   NL+++ +  L  + L G++P  I  +L  L++++L +N F G++P
Sbjct:   392 LNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEI-GFLGKLEIMYLYENRFSGEMP 450

Query:   213 LALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPXXXXX 272
             + +  C RLQ ++    +LSG IP  I  L  L ++ LR N+L G IP  +G        
Sbjct:   451 VEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVI 510

Query:   273 XXXXXXXXXXXPAAIFNMSTVKKIYLL-DNSLLGSFSLGIDLSLPNVERLNLGLNRFSGT 331
                        P++ F   T  +++++ +NSL G+    + ++L N+ R+N   N+F+G+
Sbjct:   511 DLADNQLSGSIPSS-FGFLTALELFMIYNNSLQGNLPDSL-INLKNLTRINFSSNKFNGS 568

Query:   332 IPSFITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPTSIGNLSMSL 382
             I     ++S L + D+  N F G IP  +G         L  N   G +P + G +S  L
Sbjct:   569 ISPLCGSSSYLSF-DVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKIS-EL 626

Query:   383 ENIYISNCNIGGSIPQXXXXXXXXXXXXXEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAG 442
               + IS  ++ G IP                N L+G IP   G+L  L  L L  NK  G
Sbjct:   627 SLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVG 686

Query:   443 SIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDI 502
             S+P ++  L  + TL L GN  +GSIP  +GNL +L + +L  N+L+  LPST   L  +
Sbjct:   687 SLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKL 746

Query:   503 LFFDLSSNSLDGPLSLDIGNLR-VVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLE 561
                 LS N+L G + ++IG L+ +   ++LS NNF+G IPSTI  L  L+++ L+ N L 
Sbjct:   747 FELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLV 806

Query:   562 GLIPESFGYLTEL---NLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPXXXX 618
             G +P   G +  L   NLS+N LEG++ +   F+ + A +F+GN  LCG P         
Sbjct:   807 GEVPGQIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSPLSHCNRAGS 864

Query:   619 XXXXXXXXXMLLLVIVLPLSTAL---IIAVPLALK-----YKSIRGGKS 659
                       ++++  +    A+   ++ + L  K     +K +RGG S
Sbjct:   865 KNQRSLSPKTVVIISAISSLAAIALMVLVIILFFKQNHDLFKKVRGGNS 913

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 6.2e-81, Sum P(3) = 6.2e-81
 Identities = 172/549 (31%), Positives = 263/549 (47%)

Query:    53 ITTDQQALLALKAHISYDPT--NLLAQNSTSNTSVCNWIGITC-NVNSHRVTALNISSLN 109
             I  D Q LL +K  +  +P   + L Q ++ N + C+W G+TC N    RV ALN++ L 
Sbjct:    23 INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLG 82

Query:   110 LQGTIPPQXXXXXXXXXXXXXXXXXXGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNL 169
             L G+I P                   G IP ++  +  L+ L    NQL+G + S   +L
Sbjct:    83 LTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSL 142

Query:   170 SSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFK 229
              ++  +R+  ++L G++P  + N ++ L++L LA     G IP  L +  R+Q L L   
Sbjct:   143 VNIRSLRIGDNELVGDIPETLGNLVN-LQMLALASCRLTGPIPSQLGRLVRVQSLILQDN 201

Query:   230 KLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPXXXXXXXXXXXXXXXXPAAIFN 289
              L G IP E+ N + L   +   N L G IP E+G L                 P+ +  
Sbjct:   202 YLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGE 261

Query:   290 MSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGT 349
             MS ++ + L+ N L G     +   L N++ L+L  N  +G IP    N S+L+ L +  
Sbjct:   262 MSQLQYLSLMANQLQGLIPKSL-ADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLAN 320

Query:   350 NSFSGIIP------NT----IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQX 399
             N  SG +P      NT    + L+G  L G +P  +     SL+ + +SN ++ GSIP+ 
Sbjct:   321 NHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQ-SLKQLDLSNNSLAGSIPEA 379

Query:   400 XXXXXXXXXXXXEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
                           N L G++  +   L  LQ L L  N L G +P ++  L +L  L L
Sbjct:   380 LFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFL 439

Query:   460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLD 519
               N+FSG IP  +GN TSL+  D+  N     +P +   LK++    L  N L G L   
Sbjct:   440 YENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPAS 499

Query:   520 IGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNL 576
             +GN   +  ++L+ N  SG IPS+ G LK L+ + L  N L+G +P+S      LT +NL
Sbjct:   500 LGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINL 559

Query:   577 SFNKLEGEI 585
             S N+L G I
Sbjct:   560 SHNRLNGTI 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 3.0e-74, Sum P(2) = 3.0e-74
 Identities = 221/774 (28%), Positives = 329/774 (42%)

Query:    51 SNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNL 110
             S +  + +AL+A+KA  S     LL  +   N   C+W G+ C+  S  V +LN+S+LNL
Sbjct:    26 SPMNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNVVSLNLSNLNL 85

Query:   111 QGTIPPQXXXXXXXXXXXXXXXXXXGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLS 170
              G I                     G IP  I     L ++DFS N L G +      L 
Sbjct:    86 GGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIPFSISKLK 145

Query:   171 SVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKK 230
              +  + L +++L+G +P  +   +  LK L LA+N   G+IP  L   + LQ L L    
Sbjct:   146 QLEFLNLKNNQLTGPIPATLTQ-IPNLKTLDLARNQLTGEIPRLLYWNEVLQYLGLRGNM 204

Query:   231 LSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPXXXXXXXXXXXXXXXXPAAIFNM 290
             L+G +  ++  LT L    +R N L G IP  IG                   P  I   
Sbjct:   205 LTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQITGVIPYNI-GF 263

Query:   291 STVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTN 350
               V  + L  N L G     I L +  +  L+L  N  +G IP  + N S    L +  N
Sbjct:   264 LQVATLSLQGNKLTGRIPEVIGL-MQALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGN 322

Query:   351 SFSGIIPNTIG---------LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQXXX 401
               +G IP  +G         L  N L G +P  +G L    E + ++N N+ G IP    
Sbjct:   323 KLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFE-LNLANNNLVGLIPSNIS 381

Query:   402 XXXXXXXXXXEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAG 461
                        GN L+G++P+ F  L  L  L L  N   G IP +L H+  L+TL L+G
Sbjct:   382 SCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSG 441

Query:   462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIG 521
             N FSGSIP  LG+L  L   +L  N L   LP+ F NL+ I   D+S N L G +  ++G
Sbjct:   442 NNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELG 501

Query:   522 NLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKL 581
              L+ +  + L+ N   G IP  + +   L N++++ N L G+IP    +      SF   
Sbjct:   502 QLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFF-- 559

Query:   582 EGEIPRGGPFANFTAKSFMGNEKLCG--LPNLQFPXXXXXXXXXXXXXMLLLVIVLPLST 639
                   G PF      +++G+  +CG  LP  Q                L+ +I + +  
Sbjct:   560 ------GNPFL---CGNWVGS--ICGPSLPKSQVFTRVAVICMVLGFITLICMIFIAVYK 608

Query:   640 ALIIAVPLALKYKSIRGGKSKTLRRF-----SYQDLFRATEKFSKENLIGVGSFGSVYKG 694
             +      L    K   G     +        ++ D+ R TE   ++ +IG G+  +VYK 
Sbjct:   609 SKQQKPVLKGSSKQPEGSTKLVILHMDMAIHTFDDIMRVTENLDEKYIIGYGASSTVYKC 668

Query:   695 RLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN----HVKRISSCSN-------E 743
                    +AIK  +       + FE E E + +IRHRN    H   +S   N       E
Sbjct:   669 TSKTSRPIAIKRIYNQYPSNFREFETELETIGSIRHRNIVSLHGYALSPFGNLLFYDYME 728

Query:   744 DFKALDCLHSTN--CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNV 795
             +    D LH       L+   +L I +  A  L YLH   +  +IH D+K  N+
Sbjct:   729 NGSLWDLLHGPGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNI 782

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 199/728 (27%), Positives = 325/728 (44%)

Query:    96 NSHRVTALNISSLNLQGTIPPQXXXXXXXXXXXXXXXXXXGDIPPSIFTMHKLKFLDFSD 155
             N  ++ AL I    L  +IP                    G I   I  +  L+ L    
Sbjct:   286 NLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHS 345

Query:   156 NQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
             N  +G       NL ++  + +  + +SGELP ++   L  L+ L    N+  G IP ++
Sbjct:   346 NNFTGEFPQSITNLRNLTVLTVGFNNISGELPADL-GLLTNLRNLSAHDNLLTGPIPSSI 404

Query:   216 SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPXXXXXXXX 275
             S C  L+LL+L   +++G IP+    +  L  IS+  N   GEIP +I            
Sbjct:   405 SNCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFTGEIPDDIFNCSNLETLSVA 463

Query:   276 XXXXXXXXPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSF 335
                        I  +  ++ + +  NSL G     I  +L ++  L L  N F+G IP  
Sbjct:   464 DNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIG-NLKDLNILYLHSNGFTGRIPRE 522

Query:   336 ITNASKLVYLDMGTNSFSGIIP---------NTIGLTGNPLDGVLPTSIGNLSMSLENIY 386
             ++N + L  L M +N   G IP         + + L+ N   G +P     L  SL  + 
Sbjct:   523 MSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLE-SLTYLS 581

Query:   387 ISNCNIGGSIPQXXXXXXXXXXXXXEGNKLTGSIP-VTFGRLQKLQGLYLPF--NKLAGS 443
             +      GSIP                N LTG+IP      L+ +Q LYL F  N L G+
Sbjct:   582 LQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQ-LYLNFSNNLLTGT 640

Query:   444 IPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPS-TFWNLKDI 502
             IP +L  L  +  + L+ N FSGSIP  L    ++ + D   N L+  +P   F  +  I
Sbjct:   641 IPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMI 700

Query:   503 LFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEG 562
             +  +LS NS  G +    GN+  ++ ++LS NN +G+IP ++ +L  L+++ LA N L+G
Sbjct:   701 ISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKG 760

Query:   563 LIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPXXXXXXXX 622
              +PES G    +N S   L G     G  +    K     +K                  
Sbjct:   761 HVPES-GVFKNINAS--DLMGNTDLCG--SKKPLKPCTIKQKSSHFSKRTRVILIILGSA 815

Query:   623 XXXXXMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENL 682
                  +LLLV++L         +  + +        +  L+RF  ++L +AT+ F+  N+
Sbjct:   816 AALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSALKLKRFEPKELEQATDSFNSANI 875

Query:   683 IGVGSFGSVYKGRLHDGIEVAIKVFH--QNCAMALKSFEAECEVMKNIRHRNHVKRIS-S 739
             IG  S  +VYKG+L DG  +A+KV +  +  A + K F  E + +  ++HRN VK +  +
Sbjct:   876 IGSSSLSTVYKGQLEDGTVIAVKVLNLKEFSAESDKWFYTEAKTLSQLKHRNLVKILGFA 935

Query:   740 CSNEDFKAL-----------DCLHSTNCSL-NIFDKLNIMIDVASALEYLHFSHSTPVIH 787
               +   KAL           D +H +   + ++ +K+++ + +AS ++YLH  +  P++H
Sbjct:   936 WESGKTKALVLPFMENGNLEDTIHGSAAPIGSLLEKIDLCVHIASGIDYLHSGYGFPIVH 995

Query:   788 CDLKPKNV 795
             CDLKP N+
Sbjct:   996 CDLKPANI 1003

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 205/660 (31%), Positives = 312/660 (47%)

Query:    73 NLLAQNSTSNTSVCNWIGITCNV-NSHRVTALNISSLNLQGTIPPQXXXXXXXXXXXXXX 131
             +L + N++ +   C W+G+ C   + HRV  L + S NL G I P               
Sbjct:    52 SLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGIISPSLGNLSFLRTLQLSD 111

Query:   132 XXXXGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNIC 191
                 G IP  +  + +L+ L  + N LSG + +   NL+S+  + L ++ LSG +P ++ 
Sbjct:   112 NHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSL- 170

Query:   192 NYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLR 251
               L  L  L LA+N   G IP +  + +RL  L+L F  LSGAIP  I N++ L    + 
Sbjct:   171 GKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVI 230

Query:   252 NNKLRGEIP-HEIGYLPXXXXXXXXXXXXXXXXPAAIFNMSTVKKIYLLDNSLLGSFSLG 310
             +NKL G +P +    LP                PA+I N S +    +  NS  G     
Sbjct:   231 SNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPE 290

Query:   311 IDLSLPNVERLNLG--LNRFSGT----IPSFITNASKLVYLDMGTNSFSGIIPNTIG--- 361
             I   + N++RL L   L+    T      + +TN S L  +++G   F G++P+++    
Sbjct:   291 IG-RMRNLQRLELPETLSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLS 349

Query:   362 -------LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQXXXXXXXXXXXXXEGN 414
                    +  N + G LP  IGNL ++L+ + ++N ++ GS+P              + N
Sbjct:   350 SSLVSLSIRDNKISGSLPRDIGNL-VNLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNN 408

Query:   415 KLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGN 474
             KL GS+P+T G L +L  + + FN   G+IP  L +L +L  + L  N F G IP  + +
Sbjct:   409 KLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGNLTKLFQINLGHNNFIGQIPIEIFS 468

Query:   475 LTSLRSP-DLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSR 533
             + +L    D+  N L   +P     LK+I+ F   SN L G     IG  +++  + L  
Sbjct:   469 IPALSEILDVSHNNLEGSIPKEIGKLKNIVEFHADSNKLSGENPSTIGECQLLQHLFLQN 528

Query:   534 NNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRGGP 590
             N  +G IP  +  LK L  + L+ N L G IP S G    L  LNLSFN   GE+P  G 
Sbjct:   529 NFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPMSLGDMPLLHSLNLSFNSFHGEVPTNGV 588

Query:   591 FANFTAKSFMGNEKLCG-LPNLQFPXXXXXXXXXXXXXMLLLVIVLPL-STALIIAVPLA 648
             FAN +     GN  +CG +P L  P             +LLLV+V+ L ST  + ++   
Sbjct:   589 FANASEIYIQGNAHICGGIPELHLPTCSLKSRKKKKHQILLLVVVICLVSTLAVFSLLYM 648

Query:   649 L------KYKSIRGGKSKTLR-RFSYQDLFRATEKFSKENLIGVGSFGSVYKGRL--HDG 699
             L      + K +    S       +Y+ L +AT+ FS  +L+G GSFGSVYKG     DG
Sbjct:   649 LLTCHKRRKKEVPATTSMQGHPMITYKQLVKATDGFSSSHLLGSGSFGSVYKGEFDSQDG 708

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
 Identities = 178/566 (31%), Positives = 265/566 (46%)

Query:    59 ALLALKAHISYDPTNLLAQNSTSNTSV-CNWIGITCNVNSHRVTALNISSLNLQGTIPPQ 117
             AL A K ++ +DP   L     S  +  C+W G+ C   +HRVT + +  L L G I  +
Sbjct:    31 ALTAFKLNL-HDPLGALTSWDPSTPAAPCDWRGVGCT--NHRVTEIRLPRLQLSGRISDR 87

Query:   118 XXXXXXXXXXXXXXXXXXGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL 177
                               G IP S+    +L  +    N LSG L     NL+S+    +
Sbjct:    88 ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNV 147

Query:   178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPK 237
               ++LSGE+PV + + L +L +   + N F GQIP  L+   +LQLLNL + +L+G IP 
Sbjct:   148 AGNRLSGEIPVGLPSSLQFLDI---SSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPA 204

Query:   238 EISNLTILRKISLRNNKLRGEIPHEIGYLPXXXXXXXXXXXXXXXXPAAIFNMSTVKKIY 297
              + NL  L+ + L  N L+G +P  I                    PAA   +  ++ + 
Sbjct:   205 SLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLS 264

Query:   298 LLDNSLLGS--FSLGIDLSLPNVERLNLGLNRFSGTI-PSFITNA-SKLVYLDMGTNSFS 353
             L +N+  G+  FSL  + SL  V+   LG N FS  + P    N  + L  LD+  N  S
Sbjct:   265 LSNNNFSGTVPFSLFCNTSLTIVQ---LGFNAFSDIVRPETTANCRTGLQVLDLQENRIS 321

Query:   354 GIIP----NTIGL-----TGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQXXXXXX 404
             G  P    N + L     +GN   G +P  IGNL   LE + ++N ++ G IP       
Sbjct:   322 GRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKR-LEELKLANNSLTGEIPVEIKQCG 380

Query:   405 XXXXXXXEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKF 464
                    EGN L G IP   G ++ L+ L L  N  +G +P  + +L +L  L L  N  
Sbjct:   381 SLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNL 440

Query:   465 SGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLR 524
             +GS P  L  LTSL   DL  NR +  +P +  NL ++ F +LS N   G +   +GNL 
Sbjct:   441 NGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLF 500

Query:   525 VVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTEL---NLSFNKL 581
              +  ++LS+ N SG++P  +  L ++Q I+L  N   G++PE F  L  L   NLS N  
Sbjct:   501 KLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSF 560

Query:   582 EGEIPRGGPFANFTAKSFMGNEKLCG 607
              GEIP+   F        + +  + G
Sbjct:   561 SGEIPQTFGFLRLLVSLSLSDNHISG 586

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVI000210 hypothetical protein (1019 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	827
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-81
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-56
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-23
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	5e-21
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-20
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	6e-20
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	6e-19
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-18
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	5e-18
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	7e-15
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	4e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-12
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	7e-10
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-09
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-09
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	3e-09
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-09
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	3e-09
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	4e-09
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	4e-09
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	5e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	6e-09
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	7e-09
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	8e-09
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-08
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	4e-08
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	4e-08
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-08
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	6e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-08
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-07
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	1e-07
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	1e-07
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	2e-07
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	3e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	3e-07
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	4e-07
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	4e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	8e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	1e-06
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-06
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	2e-06
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	2e-06
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	3e-06
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	4e-06
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	4e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	5e-06
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	5e-06
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	6e-06
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	7e-06
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	7e-06
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	8e-06
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	1e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-05
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-05
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-05
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	1e-05
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-05
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-05
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-05
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	3e-05
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	4e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	4e-05
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	4e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	6e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	7e-05
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	8e-05
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	8e-05
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	9e-05
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	9e-05
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	9e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	1e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	1e-04
pfam03109	117	pfam03109, ABC1, ABC1 family	2e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	2e-04
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-04
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	4e-04
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	4e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	4e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	4e-04
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	5e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	5e-04
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	5e-04
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	8e-04
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	8e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	0.001
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	0.001
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	0.001
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.001
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.001
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	0.001
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	0.001
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.002
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	0.002
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	0.002
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.002
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	0.002
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	0.002
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	0.002
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.002
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	0.003
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	0.003
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	0.003
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	0.003
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.003
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	0.003
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	0.003
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	0.003
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	0.004
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  280 bits (718), Expect = 4e-81
 Identities = 192/559 (34%), Positives = 288/559 (51%), Gaps = 60/559 (10%)

Query: 35  LTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCN 94
           +     L+L  ++  A  +    + LL+ K+ I+ DP   L+  ++S   VC W GITCN
Sbjct: 13  IFMLFFLFLNFSMLHAEEL----ELLLSFKSSIN-DPLKYLSNWNSSAD-VCLWQGITCN 66

Query: 95  VNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTM-HKLKFLDF 153
            NS RV ++++S  N+ G I   +  L  + T+NLS+N+LSG IP  IFT    L++L+ 
Sbjct: 67  -NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 154 SDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPL 213
           S+N  +GS+                     G +P         L+ L L+ NM  G+IP 
Sbjct: 126 SNNNFTGSIP-------------------RGSIPN--------LETLDLSNNMLSGEIPN 158

Query: 214 ALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLV 273
            +     L++L+LG   L G IP  ++NLT L  ++L +N+L G+IP E+G + +L+ + 
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 274 LGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSF--SLGIDLSLPNVERLNLGLNRFSGT 331
           LG+NNL G +P  I  ++++  + L+ N+L G    SLG   +L N++ L L  N+ SG 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG---NLKNLQYLFLYQNKLSGP 275

Query: 332 IPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCN 391
           IP  I +  KL+ LD+  NS SG IP  +    N                LE +++ + N
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN----------------LEILHLFSNN 319

Query: 392 IGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHL 451
             G IP  +++L  L +L L  NK +G IP   G+   L  L L  N L G IP+ LC  
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 452 ARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNS 511
             L  L L  N   G IP  LG   SLR   L  N  +  LPS F  L  + F D+S+N+
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 512 LDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYL 571
           L G ++    ++  +  ++L+RN F G +P + G  K L+N+ L+ N   G +P   G L
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSL 498

Query: 572 TE---LNLSFNKLEGEIPR 587
           +E   L LS NKL GEIP 
Sbjct: 499 SELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  209 bits (533), Expect = 2e-56
 Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 25/390 (6%)

Query: 109 NLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFN 168
           NL G IP ++G L+SL  L+L +N L+G IP S+  +  L++L    N+LSG +    F+
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 169 LSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGF 228
           L  ++ + L  + LSGE+P  +   L  L++L L  N F G+IP+AL+   RLQ+L L  
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 229 KKLSGAIPKEI---SNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPA 285
            K SG IPK +   +NLT+L    L  N L GEIP  +    NL  L+L  N+L G +P 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVL---DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 286 AIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYL 345
           ++    +++++ L DNS  G         LP V  L++  N   G I S   +   L  L
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457

Query: 346 DMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSN 405
            +  N F G +P++ G                 S  LEN+ +S     G++P+ + +LS 
Sbjct: 458 SLARNKFFGGLPDSFG-----------------SKRLENLDLSRNQFSGAVPRKLGSLSE 500

Query: 406 LLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS 465
           L+ L L  NKL+G IP      +KL  L L  N+L+G IP     +  L+ L L+ N+ S
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Query: 466 GSIPSCLGNLTSLRSPDLGSNRLTSVLPST 495
           G IP  LGN+ SL   ++  N L   LPST
Sbjct: 561 GEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  178 bits (453), Expect = 3e-46
 Identities = 126/362 (34%), Positives = 184/362 (50%), Gaps = 17/362 (4%)

Query: 240 SNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMS-TVKKIYL 298
           +N + +  I L    + G+I   I  LP ++ + L  N L G +P  IF  S +++ + L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 299 LDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPN 358
            +N+  GS   G   S+PN+E L+L  N  SG IP+ I + S L  LD+G N   G IPN
Sbjct: 126 SNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 359 TIG---------LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLL 409
           ++          L  N L G +P  +G +  SL+ IY+   N+ G IP  I  L++L  L
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 410 DLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIP 469
           DL  N LTG IP + G L+ LQ L+L  NKL+G IP  +  L +L +L L+ N  SG IP
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 470 SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGI 529
             +  L +L    L SN  T  +P    +L  +    L SN   G +  ++G    +  +
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 530 NLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIP 586
           +LS NN +G+IP  +    +L  + L  N LEG IP+S G    L  + L  N   GE+P
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 587 RG 588
             
Sbjct: 422 SE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  163 bits (413), Expect = 3e-41
 Identities = 116/312 (37%), Positives = 161/312 (51%), Gaps = 24/312 (7%)

Query: 289 NMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI-TNASKLVYLDM 347
           N S V  I L   ++ G  S  I   LP ++ +NL  N+ SG IP  I T +S L YL++
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAI-FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 348 GTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLL 407
             N+F+G IP           G +P        +LE + +SN  + G IP  I + S+L 
Sbjct: 126 SNNNFTGSIPR----------GSIP--------NLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 408 LLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGS 467
           +LDL GN L G IP +   L  L+ L L  N+L G IP +L  +  L  + L  N  SG 
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Query: 468 IPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVI 527
           IP  +G LTSL   DL  N LT  +PS+  NLK++ +  L  N L GP+   I +L+ +I
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 528 GINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPE---SFGYLTELNLSFNKLEGE 584
            ++LS N+ SG+IP  +  L++L+ + L  N   G IP    S   L  L L  NK  GE
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 585 IPRG-GPFANFT 595
           IP+  G   N T
Sbjct: 348 IPKNLGKHNNLT 359

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (271), Expect = 4e-24
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 2/211 (0%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
           +S  +  L + S +L+G IP  LG   SL  + L  N  SG++P     +  + FLD S+
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437

Query: 156 NQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
           N L G ++S  +++ S+  + L  +K  G LP +  +    L+ L L++N F G +P  L
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKL 495

Query: 216 SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG 275
                L  L L   KLSG IP E+S+   L  + L +N+L G+IP     +P L  L L 
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGS 306
            N L G +P  + N+ ++ ++ +  N L GS
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Length = 968

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 98.8 bits (247), Expect = 2e-23
 Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 28/166 (16%)

Query: 683 IGVGSFGSVYKGRLH-DGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           +G G FG+VY  R    G +VAIK+   ++ +  L+    E E++K + H N VK     
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 741 SNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            +E+   L           D L      L+  + L I++ +   LEYLH   S  +IH D
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLH---SNGIIHRD 117

Query: 790 LKPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           LKP+N+            DFG+ +LLT D+S+++T  + T  YMAP
Sbjct: 118 LKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKT-IVGTPAYMAP 162

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 93.0 bits (232), Expect = 5e-21
 Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHRNHV 734
           +     +G GSFG VY  R    G  VAIKV   +      +    E +++K ++H N V
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 735 KRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +      +ED   L           D L      L+  +    +  + SALEYLH S   
Sbjct: 61  RLYDVFEDEDKLYLVMEYCEGGDLFDLLKK-RGRLSEDEARFYLRQILSALEYLH-SKG- 117

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            ++H DLKP+N+           DFG+ R L     +  T  + T  YMAP
Sbjct: 118 -IVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKL--TTFVGTPEYMAP 165

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 92.2 bits (230), Expect = 1e-20
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 34/176 (19%)

Query: 678 SKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHR 731
           +    +G G+FG VYKG+L        +EVA+K   ++ +   ++ F  E  +M+ + H 
Sbjct: 2   TLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHP 61

Query: 732 NHVKRISSCSNE-------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLH 778
           N VK +  C+ E             D      L      L++ D L+  + +A  +EYL 
Sbjct: 62  NVVKLLGVCTEEEPLYIVMEYMEGGDLL--SYLRKNRPKLSLSDLLSFALQIARGMEYL- 118

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
              S   IH DL  +N            DFG+ R L  D    +    + I +MAP
Sbjct: 119 --ESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAP 172

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 90.0 bits (224), Expect = 6e-20
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 29/166 (17%)

Query: 683 IGVGSFGSVYKGRLH-DGIEVAIKVF---HQNCAMALKSFEAECEVMKNIRHRNHVKRIS 738
           +G GSFG+VYK +    G  VA+K+     +      ++   E  +++ + H N V+ I 
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKK-DQTARREIRILRRLSHPNIVRLID 65

Query: 739 SCSNEDFKA----------LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHC 788
           +  ++D             L    S    L+  +   I + +   LEYLH S+   +IH 
Sbjct: 66  AFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLH-SNG--IIHR 122

Query: 789 DLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           DLKP+N+           DFG+ + L    S + T    T  YMAP
Sbjct: 123 DLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFV-GTPWYMAP 167

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 87.2 bits (217), Expect = 6e-19
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 29/175 (16%)

Query: 676 KFSKENLIGVGSFGSVYKGRLHD-GIEVAIKV--FHQNCAMALKSFEAECEVMKNIRHRN 732
           ++++  L+G GSFGSVY     D G  +A+K      +    L++ E E  ++ +++H N
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN 60

Query: 733 HVKRISSCSNEDFKALDCL--HSTNCSL----NIFDKLNI------MIDVASALEYLHFS 780
            V+   S  +E+   L+    + +  SL      F KL           +   L YLH S
Sbjct: 61  IVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLH-S 119

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           +   ++H D+K  N+           DFG  + L    +   T ++  T  +MAP
Sbjct: 120 NG--IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAP 172

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 84.5 bits (210), Expect = 4e-18
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 33/177 (18%)

Query: 676 KFSKENLIGVGSFGSVYKGRLHD-----GIEVAIKVFHQNCA-MALKSFEAECEVMKNIR 729
           +  K+  +G G+FG VYKG L         +VA+K   +  +    + F  E  +MK + 
Sbjct: 2   ELGKK--LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLS 59

Query: 730 HRNHVKRISSCSNED-------FKA----LDCLHSTNCSLNIFDKLNIMIDVASALEYLH 778
           H N V+ +  C+  +       +      LD L      L + D L + + +A  +EYL 
Sbjct: 60  HPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYL- 118

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYMAP 824
              S   +H DL  +N            DFG+ R +  D    +     + I +MAP
Sbjct: 119 --ESKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKWMAP 173

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 84.1 bits (209), Expect = 5e-18
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 31/175 (17%)

Query: 678 SKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHR 731
           +    +G G+FG VYKG L        +EVA+K   ++ +   ++ F  E  +M+ + H 
Sbjct: 2   TLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHP 61

Query: 732 NHVKRISSCSNED-------FKALDCLHS-----TNCSLNIFDKLNIMIDVASALEYLHF 779
           N VK +  C+ E+       +     L           L++ D L+  + +A  +EYL  
Sbjct: 62  NIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYL-- 119

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             S   IH DL  +N            DFG+ R L  D         + I +MAP
Sbjct: 120 -ESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAP 173

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 74.8 bits (185), Expect = 7e-15
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 63/192 (32%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA---ECEVMKNIRHR 731
           K+     IG GSFG VY  R   DG    +K    +  M+ K  E    E +++K + H 
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSN-MSEKEREDALNEVKILKKLNHP 59

Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNI----------FDK----------------LN 765
           N +K       E F+           L I            K                L+
Sbjct: 60  NIIKYY-----ESFE-------EKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILD 107

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
             + +  AL+YLH      ++H D+KP+N+F          DFGI ++L+    + +T  
Sbjct: 108 WFVQLCLALKYLHSRK---ILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKT-- 162

Query: 816 LVTIG---YMAP 824
              +G   Y++P
Sbjct: 163 --VVGTPYYLSP 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 40/180 (22%)

Query: 681 NLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNCAM--ALKSFEAECEVMKNIRHRNHV 734
             +G G+FG VYKG+L        EVA+K      A     K F  E  VMK + H N V
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLK-EDASEEERKDFLKEARVMKKLGHPNVV 59

Query: 735 KRISSCSNED----------FKALD-------CLHSTNC--SLNIFDKLNIMIDVASALE 775
           + +  C+ E+             L         +  +    +L++ D L+  I +A  +E
Sbjct: 60  RLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGME 119

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQTETLVTIGYMAP 824
           YL    S   +H DL  +N            DFG+ R +   D    +T   + I +MAP
Sbjct: 120 YL---ASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAP 176

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 97  SHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDN 156
           S R+  L++S     G +P +LG+LS L  L LS NKLSG+IP  + +  KL  LD S N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 157 QLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIP 212
           QLSG + +    +  +  + L  ++LSGE+P N+ N    ++V  ++ N  HG +P
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV-NISHNHLHGSLP 588

Length = 968

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 29/169 (17%)

Query: 680 ENLIGVGSFGSVYKG--RLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           ++ +G G +G VY+G  + +    VA+K   ++  M ++ F  E  VMK I+H N V+ +
Sbjct: 11  KHKLGGGQYGEVYEGVWKKYSLT-VAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLL 68

Query: 738 SSCSNE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPV 785
             C+ E       +F      LD L   N   +N    L +   ++SA+EYL   +    
Sbjct: 69  GVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 125

Query: 786 IHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           IH DL  +N          V DFG+ RL+TGD           I + AP
Sbjct: 126 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 174

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 35/87 (40%), Positives = 49/87 (56%)

Query: 387 ISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPD 446
           + N  + G IP  IS L +L  ++L GN + G+IP + G +  L+ L L +N   GSIP+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 447 QLCHLARLNTLGLAGNKFSGSIPSCLG 473
            L  L  L  L L GN  SG +P+ LG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 51/173 (29%), Positives = 69/173 (39%), Gaps = 31/173 (17%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
            F     IG G FG VYK R    G EVAIKV         +    E +++K  +H N V
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIV 60

Query: 735 KRISSCSNEDF-----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           K   S   +D               D L STN +L       +  ++   LEYLH +   
Sbjct: 61  KYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNG-- 118

Query: 784 PVIHCDLKPKNVF----------DFGI-GRLLTGDRSMIQTETLV-TIGYMAP 824
            +IH D+K  N+           DFG+  +L           T+V T  +MAP
Sbjct: 119 -IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDT----KARNTMVGTPYWMAP 166

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 23/170 (13%)

Query: 676 KFSKENLIGVGSFGSVYKG-RLHDGIEVAIK--VFHQNCAMALKSFEAECEVMKNIRHRN 732
            +   +LIG G+FG VYKG  L  G  VAIK     +    ALKS   E +++KN++H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 733 HVKRISSCSNEDFKALDCLHSTNCSL-NI---FDKLN---IMIDVASALEYLHFSHSTPV 785
            VK I S    D   +   ++ N SL  I   F       + + V   L+ L + H   V
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGV 120

Query: 786 IHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           IH D+K  N+           DFG+   L          ++V T  +MAP
Sbjct: 121 IHRDIKAANILTTKDGVVKLADFGVATKLNDVSK--DDASVVGTPYWMAP 168

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 69.0 bits (167), Expect = 3e-12
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 38/182 (20%)

Query: 676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVF---HQNCAMALKSFEAECEVMKNIRHRN 732
            +     +G GSFG VY  R  D   VA+KV     ++ +  ++ F  E +++ ++ H  
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 733 HVKRISS--------------CSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLH 778
           ++ ++                      + L         L+  + L I+  + SALEYLH
Sbjct: 59  NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH 118

Query: 779 FSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETL-----VTIGYM 822
              S  +IH D+KP+N+            DFG+ +LL    S      L      T GYM
Sbjct: 119 ---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYM 175

Query: 823 AP 824
           AP
Sbjct: 176 AP 177

Length = 384

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 7e-12
 Identities = 35/86 (40%), Positives = 48/86 (55%)

Query: 409 LDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSI 468
           L L+   L G IP    +L+ LQ + L  N + G+IP  L  +  L  L L+ N F+GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 469 PSCLGNLTSLRSPDLGSNRLTSVLPS 494
           P  LG LTSLR  +L  N L+  +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 25/158 (15%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHR 731
           R  E+F+ E  +G G FG V++G   + + VAIK+   +  +  + F+ E + +K +RH+
Sbjct: 3   RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHK 62

Query: 732 NHVKRISSCS--------NEDFKALDCLHSTNC----SLNIFDKLNIMIDVASALEYLHF 779
           + +   + CS         E  +    L          L +   +++   VA  + YL  
Sbjct: 63  HLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEE 122

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGD 807
            +S   IH DL  +N+           DFG+ RL+  D
Sbjct: 123 QNS---IHRDLAARNILVGEDLVCKVADFGLARLIKED 157

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 88  WIGITCNVNSHR----VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIF 143
           W G  C  +S +    +  L + +  L+G IP  +  L  L ++NLS N + G+IPPS+ 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 144 TMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELP 187
           ++  L+ LD S N  +GS+      L+S+  + L+ + LSG +P
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 46/184 (25%), Positives = 68/184 (36%), Gaps = 45/184 (24%)

Query: 683 IGVGSFGSVYKGRLHDGIE------VAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVK 735
           +G G+FG V+ G  +          VA+K   +     A K FE E E++ N +H N VK
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 736 RISSCSNE------------------------DFKALDCLHSTNCSLNIFDKLNIMIDVA 771
               C+                          D   L    S    L +   L I + +A
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIA 132

Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR-LLTGDRSMIQTETLVTIG 820
           S + YL   H    +H DL  +N            DFG+ R + T D   +   T++ I 
Sbjct: 133 SGMVYLASQH---FVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIR 189

Query: 821 YMAP 824
           +M P
Sbjct: 190 WMPP 193

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 4e-11
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 177 LDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIP 236
           LD+  L G +P +I + L +L+ + L+ N   G IP +L     L++L+L +   +G+IP
Sbjct: 425 LDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 237 KEISNLTILRKISLRNNKLRGEIPHEIGYLP 267
           + +  LT LR ++L  N L G +P  +G   
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 7e-11
 Identities = 24/67 (35%), Positives = 44/67 (65%)

Query: 98  HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQ 157
             + ++N+S  +++G IPP LG+++SL  L+LS+N  +G IP S+  +  L+ L+ + N 
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 158 LSGSLSS 164
           LSG + +
Sbjct: 502 LSGRVPA 508

Length = 623

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)

Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V++G  ++   VA+K       M  K F AE ++MK +RH   ++  + C+ 
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPG-TMDPKDFLAEAQIMKKLRHPKLIQLYAVCTL 72

Query: 743 ED-----------FKALDCLH-STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDL 790
           E+              L+ L      +L +   +++   VAS + YL   +    IH DL
Sbjct: 73  EEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN---YIHRDL 129

Query: 791 KPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             +NV           DFG+ R++  D    +      I + AP
Sbjct: 130 AARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAP 173

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 360 IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGS 419
           +GL    L G +P  I  L   L++I +S  +I G+IP  + ++++L +LDL  N   GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 420 IPVTFGRLQKLQGLYLPFNKLAGSIP----DQLCHLARLNTLGLAG 461
           IP + G+L  L+ L L  N L+G +P     +L H A  N    AG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527

Length = 623

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 26/164 (15%)

Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K       M+ ++F  E ++MK +RH   V+  + CS 
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPG-TMSPEAFLQEAQIMKKLRHDKLVQLYAVCSE 72

Query: 743 ED-------FKA----LDCLHS-TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDL 790
           E+       + +    LD L S     L +   +++   +A  + YL    S   IH DL
Sbjct: 73  EEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYL---ESRNYIHRDL 129

Query: 791 KPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             +N+           DFG+ RL+  D    +      I + AP
Sbjct: 130 AARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAP 173

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 6e-10
 Identities = 30/82 (36%), Positives = 49/82 (59%)

Query: 224 LNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVV 283
           L L  + L G IP +IS L  L+ I+L  N +RG IP  +G + +LE L L +N+  G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 284 PAAIFNMSTVKKIYLLDNSLLG 305
           P ++  +++++ + L  NSL G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 7e-10
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 19/131 (14%)

Query: 482 DLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIP 541
            L +  L   +P+    L+ +   +LS NS+ G +   +G++  +  ++LS N+F+G IP
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 542 STIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMG 601
            ++G L  L+ ++L  N L G +P + G             G +     F NFT      
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAALG-------------GRLLHRASF-NFT-----D 524

Query: 602 NEKLCGLPNLQ 612
           N  LCG+P L+
Sbjct: 525 NAGLCGIPGLR 535

Length = 623

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 60.3 bits (147), Expect = 7e-10
 Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 42/181 (23%)

Query: 683 IGVGSFGSVYK-GRLHDGIEVAIKVFH------QNCAMALKSFEAECEVMKNIRHRNHVK 735
           IG GSFG+V K  R  DG  +  K         +     +    +E  +++ ++H N V+
Sbjct: 8   IGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLV----SEVNILRELKHPNIVR 63

Query: 736 ---RISSCSNED-FKALDCLHSTNCSLNI------FDKL------NIMIDVASALEYLHF 779
              RI   SN+  +  ++     + +  I         +       I+  +  AL   H 
Sbjct: 64  YYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHN 123

Query: 780 -SHSTP-VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGL 826
            S     V+H DLKP N+F          DFG+ ++L  D S    +T V T  YM+P  
Sbjct: 124 RSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSF--AKTYVGTPYYMSPEQ 181

Query: 827 L 827
           L
Sbjct: 182 L 182

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 27/157 (17%)

Query: 683 IGVGSFGSVYKG--RLHDG--IEVAIKVFHQNCAMALKS-FEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV KG   +  G  +EVA+K   Q    A K  F  E  VM  + H   V+ I
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 738 SSCSNEDF------KALDCLHS---TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHC 788
             C  E          L  L         + + D   +   VA  + YL   H    +H 
Sbjct: 63  GVCKGEPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKH---FVHR 119

Query: 789 DLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           DL  +NV           DFG+ R L       +  T
Sbjct: 120 DLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATT 156

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 59.0 bits (144), Expect = 2e-09
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 33/177 (18%)

Query: 677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAEC--EV--MKNIRHR 731
           + K   +G G++G VYK R    G  VA+K    +     +   +    E+  +K ++H 
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLD--NEEEGIPSTALREISLLKELKHP 58

Query: 732 NHVKRISSCSNED-----FKALDC-----LHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
           N VK +     E      F+  D      L      L+     +IM  +   L Y H SH
Sbjct: 59  NIVKLLDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCH-SH 117

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLT-GDRSMIQTETLVTIGYMAPGLL 827
              ++H DLKP+N+           DFG+ R      R+   T  +VT+ Y AP +L
Sbjct: 118 R--ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTY--THEVVTLWYRAPEIL 170

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 33/176 (18%)

Query: 674 TEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            E +     IG G+ G VYK      G EVAIK          +    E  +MK+ +H N
Sbjct: 18  RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPN 76

Query: 733 HVKRISS--CSNEDFKALD-----CLHSTNCSLNIFDKLN------IMIDVASALEYLHF 779
            V    S    +E +  ++      L  T+     F ++N      +  +V   LEYL  
Sbjct: 77  IVDYYDSYLVGDELWVVMEYMDGGSL--TDIITQNFVRMNEPQIAYVCREVLQGLEYL-- 132

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
            HS  VIH D+K  N+           DFG    LT ++S  +  ++V T  +MAP
Sbjct: 133 -HSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS--KRNSVVGTPYWMAP 185

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 31/79 (39%), Positives = 43/79 (54%)

Query: 209 GQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPN 268
           G IP  +SK + LQ +NL    + G IP  + ++T L  + L  N   G IP  +G L +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 269 LENLVLGFNNLVGVVPAAI 287
           L  L L  N+L G VPAA+
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 30/173 (17%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
           E F     +G GS+GSVYK      G  VAIKV        L+    E  ++K       
Sbjct: 3   EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVE--EDLQEIIKEISILKQCDSPYI 60

Query: 734 VKRISS-CSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
           VK   S   N D              D +  TN +L   +   I+      LEYLH +  
Sbjct: 61  VKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNK- 119

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              IH D+K  N+           DFG+   LT   +M +  T++ T  +MAP
Sbjct: 120 --KIHRDIKAGNILLNEEGQAKLADFGVSGQLTD--TMAKRNTVIGTPFWMAP 168

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 37/179 (20%)

Query: 681 NLIGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMAL-KSFEAECEVMKNIRHRNH---V 734
             IG G++G+VYK R L+ G  VA+K          +  S   E  ++K +    H   V
Sbjct: 5   AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIV 64

Query: 735 KRISSCSNED----------FKALDCLHST---NCSLNIFDK---LNIMIDVASALEYLH 778
           + +  C              F+ +D   +T    C           ++M  +   +++LH
Sbjct: 65  RLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLH 124

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            SH   ++H DLKP+N+           DFG+ R+      M  T  +VT+ Y AP +L
Sbjct: 125 -SHR--IVHRDLKPQNILVTSDGQVKIADFGLARIY--SFEMALTSVVVTLWYRAPEVL 178

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 39/182 (21%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQN------CAMALKSFEAECEVMKN 727
           EK+ K + IG GS+G V+K R  + G  VAIK F ++        +AL+    E  ++K 
Sbjct: 1   EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALR----EIRMLKQ 56

Query: 728 IRHRNHVKRISSCSNEDFKALDCLH-----STNCSLNIFDK-------LNIMIDVASALE 775
           ++H N V  I     E F+    LH       +  LN  +K         I   +   L+
Sbjct: 57  LKHPNLVNLI-----EVFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQ 111

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPG 825
            ++F H    IH D+KP+N+           DFG  R+LTG      T+ + T  Y AP 
Sbjct: 112 AVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDY-TDYVATRWYRAPE 170

Query: 826 LL 827
           LL
Sbjct: 171 LL 172

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 45/149 (30%), Positives = 59/149 (39%), Gaps = 37/149 (24%)

Query: 682 LIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMAL-----KSFEAECEVMKNIRHRNHVKR 736
            IG G+FG VYKG L    EVA+K     C   L     + F  E E++K   H N VK 
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVK----TCRSTLPPDLKRKFLQEAEILKQYDHPNIVKL 57

Query: 737 ISSCSNE-------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           I  C  +                 L  L      L +   L + +D A+ +EYL    S 
Sbjct: 58  IGVCVQKQPIYIVMELVPGGSL--LTFLRKKKNRLTVKKLLQMSLDAAAGMEYL---ESK 112

Query: 784 PVIHCDLKPKN----------VFDFGIGR 802
             IH DL  +N          + DFG+ R
Sbjct: 113 NCIHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 49/193 (25%)

Query: 676 KFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNCAMALKS-FEAECEVMKNI 728
           +F +E  +G G+FG VYKG L           VAIK   +N    ++  F  E E+M ++
Sbjct: 8   RFLEE--LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDL 65

Query: 729 RHRNHVKRISSCSNE--------------------------DFKALDCLHSTNCSLNIFD 762
           +H N V  +  C+ E                          D  A     +   SL+  D
Sbjct: 66  QHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSD 125

Query: 763 KLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMI 811
            L+I I +A+ +EYL   H    +H DL  +N            DFG+ R + + D   +
Sbjct: 126 FLHIAIQIAAGMEYLSSHH---FVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRV 182

Query: 812 QTETLVTIGYMAP 824
           Q+++L+ + +M P
Sbjct: 183 QSKSLLPVRWMPP 195

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 27/143 (18%)

Query: 682 LIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
            IG G FG V  G  + G +VA+K    +   A ++F AE  VM  +RH N V+ +    
Sbjct: 13  TIGKGEFGDVMLG-DYRGQKVAVKCLKDDSTAA-QAFLAEASVMTTLRHPNLVQLLGVVL 70

Query: 742 NED-------FKA----LDCLHSTNCSLNIFDKLNIM-IDVASALEYLHFSHSTPVIHCD 789
             +       + A    +D L S   ++    +     +DV   +EYL        +H D
Sbjct: 71  QGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYL---EEKNFVHRD 127

Query: 790 LKPKNVF----------DFGIGR 802
           L  +NV           DFG+ +
Sbjct: 128 LAARNVLVSEDLVAKVSDFGLAK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 33/172 (19%)

Query: 681 NLIGVGSFGSVYKG-RLHDGIEVAIKV--FHQNCAMALKSFEAECEVMKNIRHRNHVK-- 735
           N IG G+FG VY    L  G  +A+K      N    +K    E +V++ ++H N VK  
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYY 65

Query: 736 -----RISSCSNEDFKALDCLHSTNCSL----NIFDKLNIMIDVASALEYLHFSHSTPVI 786
                R       ++    C   T   L     I D+  I +     LE L + HS  ++
Sbjct: 66  GVEVHREKVYIFMEY----CSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIV 121

Query: 787 HCDLKPKNVF----------DFG----IGRLLTGDRSMIQTETLVTIGYMAP 824
           H D+KP N+F          DFG    +    T     +Q+    T  YMAP
Sbjct: 122 HRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQS-LAGTPAYMAP 172

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 39/158 (24%)

Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V+ G+    I+VAIK+  +  AM+   F  E +VM  + H N V+ 
Sbjct: 8   FLKE--LGSGQFGVVHLGKWRGKIDVAIKMIREG-AMSEDDFIEEAKVMMKLSHPNLVQL 64

Query: 737 ISSCSNE-------DFKALDCLHSTNCSLN-------IFDK---LNIMIDVASALEYLHF 779
              C+ +       ++ A  CL      LN              L++  DV  A+EYL  
Sbjct: 65  YGVCTKQRPIFIVTEYMANGCL------LNYLRERKGKLGTEWLLDMCSDVCEAMEYL-- 116

Query: 780 SHSTPVIHCDLKPKN----------VFDFGIGRLLTGD 807
             S   IH DL  +N          V DFG+ R +  D
Sbjct: 117 -ESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDD 153

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 32/170 (18%)

Query: 682 LIGVGSFGSVYKGRLHD----GIEVAIKVFHQNCAMALKS-FEAECEVMKNIRHRNHVKR 736
            IG G FG VY+G         I VA+K      + +++  F  E  +M+   H + VK 
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKL 72

Query: 737 ISSCSNE------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
           I   +              + ++   ++  +  L      +  +  ++AL YL    S  
Sbjct: 73  IGVITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQL--STALAYL---ESKR 127

Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            +H D+  +NV           DFG+ R L  +     ++  + I +MAP
Sbjct: 128 FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAP 177

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 30/177 (16%)

Query: 677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIK---VFHQNCAMALKSFEAECEVMKNIRHRN 732
           + K   IG G++G VYK R    G  VA+K   + ++     + +   E ++++ +RH N
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIR-EIKLLQKLRHPN 59

Query: 733 HVKRI----SSCSNEDFKALDC--------LHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
            V+      S      +   +         L S             M  +   L+YLH +
Sbjct: 60  IVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN 119

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
               ++H D+K  N+           DFG+ R  T   S   T  ++T+ Y  P LL
Sbjct: 120 G---ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELL 173

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 34/171 (19%)

Query: 683 IGVGSFGSVYKGR-LHDG----IEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKR 736
           +G G+FG+VYKG  + +G    I VAIKV  +  +  A K    E  VM ++ H + V+ 
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRL 74

Query: 737 ISSCSNE------DFKALDCL------HSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
           +  C +           L CL      H  N  +     LN  + +A  + YL       
Sbjct: 75  LGICLSSQVQLITQLMPLGCLLDYVRNHKDN--IGSQYLLNWCVQIAKGMSYLEEKR--- 129

Query: 785 VIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQTETLVTIGYMAP 824
           ++H DL  +NV           DFG+ +LL   ++        V I +MA 
Sbjct: 130 LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMAL 180

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 55.3 bits (134), Expect = 4e-08
 Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 30/178 (16%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIK---VFHQNCAMALKSFEA--ECEVMKNIR 729
           ++ K   +G G++  VYK R    G  VAIK   +  +  A    +F A  E ++++ ++
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELK 60

Query: 730 HRNHVKRISSCSNEDFKAL--DCLHS--------TNCSLNIFDKLNIMIDVASALEYLHF 779
           H N +  +    ++    L  + + +         +  L   D  + M+     LEYLH 
Sbjct: 61  HPNIIGLLDVFGHKSNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLH- 119

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           S+   ++H DLKP N+           DFG+ R   G  +   T  +VT  Y AP LL
Sbjct: 120 SNW--ILHRDLKPNNLLIASDGVLKLADFGLAR-SFGSPNRKMTHQVVTRWYRAPELL 174

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 36/163 (22%)

Query: 676 KFSKENLIGVGSFGSVYKGRLHD------GIEVAIKVFHQNCAMALKS-FEAECEVMKNI 728
           KF K+  +G G FG V   R +D      G +VA+K  + +     +S FE E E+++ +
Sbjct: 7   KFIKQ--LGEGHFGKVELCR-YDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTL 63

Query: 729 RHRNHVKRISSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALE 775
            H N VK    C     ++L             D L      +N+   L     +   ++
Sbjct: 64  DHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMD 123

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR 808
           YL        IH DL  +N+           DFG+ ++L  D+
Sbjct: 124 YLGSQR---YIHRDLAARNILVESEDLVKISDFGLAKVLPEDK 163

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 29/145 (20%)

Query: 682 LIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALK-SFEAECEVMKNIRHRNHVKRISSC 740
           L+G G+FG V+KG L D   VA+K   ++    LK  F +E  ++K   H N VK I  C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 741 SNE-------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIH 787
           +               DF  L  L      L     +   +D A+ + YL    S   IH
Sbjct: 62  TQRQPIYIVMELVPGGDF--LSFLRKKKDELKTKQLVKFALDAAAGMAYL---ESKNCIH 116

Query: 788 CDLKPKN----------VFDFGIGR 802
            DL  +N          + DFG+ R
Sbjct: 117 RDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 55 TDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCN 94
           D+ ALLA K+ ++ DP+  L+  + S++  C+W G+TC+
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 27/170 (15%)

Query: 676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVK 735
              +E  IG G FG V+ G   +  +VAIK   +  AM+ + F  E +VM  + H   V+
Sbjct: 7   TLVQE--IGSGQFGLVWLGYWLEKRKVAIKTIREG-AMSEEDFIEEAQVMMKLSHPKLVQ 63

Query: 736 RISSCSNE-------DFKALDC----LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
               C+         +F    C    L +     +    L + +DV   + YL    S+ 
Sbjct: 64  LYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYL---ESSN 120

Query: 785 VIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           VIH DL  +N          V DFG+ R +  D+    T T   + + +P
Sbjct: 121 VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSP 170

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 27/176 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVF--HQNCAMALKSFEAECEVMKNIRHR 731
           EK+    L+G GS+G V K +  + G  VAIK F   ++  M  K    E  ++K +RH 
Sbjct: 1   EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHE 60

Query: 732 NHVKRISSCSNE----------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
           N V  I     +          D   LD L      L+       +  +   +E+ H SH
Sbjct: 61  NLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCH-SH 119

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           +  +IH D+KP+N+           DFG  R L      + T+ + T  Y AP LL
Sbjct: 120 N--IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE-VYTDYVATRWYRAPELL 172

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 30/145 (20%)

Query: 683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKS-FEAECEVMKNIRHRNHVKRISSC 740
           IG G+FG V+ GRL  D   VA+K   +     LK+ F  E  ++K   H N V+ I  C
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62

Query: 741 SNE-------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIH 787
           + +             DF  L  L +    L + + + ++ + A+ +EYL   H    IH
Sbjct: 63  TQKQPIYIVMELVQGGDF--LTFLRTEGPRLKVKELIQMVENAAAGMEYLESKH---CIH 117

Query: 788 CDLKPKN----------VFDFGIGR 802
            DL  +N          + DFG+ R
Sbjct: 118 RDLAARNCLVTEKNVLKISDFGMSR 142

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 34/180 (18%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVA---IKVFHQNCAMALKSFEAECEVMKNIR 729
              F  E  IG G F  VYK   L DG  VA   +++F    A A +    E +++K + 
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60

Query: 730 HRNHVKRISSC--SNEDFKALDCLHSTNCSLNI--FDKLNIMID----------VASALE 775
           H N +K ++S   +NE    L+   + + S  I  F K   +I           + SALE
Sbjct: 61  HPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALE 120

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           ++   HS  ++H D+KP NVF          D G+GR  +         +LV T  YM+P
Sbjct: 121 HM---HSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSK--TTAAHSLVGTPYYMSP 175

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 5/89 (5%)

Query: 248 ISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSF 307
           + L N  LRG IP++I  L +L+++ L  N++ G +P ++ ++++++ + L  NS  GS 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 308 --SLGIDLSLPNVERLNLGLNRFSGTIPS 334
             SLG    L ++  LNL  N  SG +P+
Sbjct: 483 PESLG---QLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 31/181 (17%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR-LHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 3   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 61

Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 62  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 121

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  D      E   V I +M
Sbjct: 122 MNYLEERR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWM 178

Query: 823 A 823
           A
Sbjct: 179 A 179

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
            + ++  ALEYLH   S  +IH D+KP N+           DF I   +T D     T T
Sbjct: 105 WICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLT--TST 159

Query: 816 LVTIGYMAP 824
             T GYMAP
Sbjct: 160 SGTPGYMAP 168

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 23/165 (13%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           ++G G++G VY  R L   + +AIK   +  +  ++    E  +   ++HRN V+ + S 
Sbjct: 15  VLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSD 74

Query: 741 SNEDFKALDCLHSTNCSLN---------IFDKLNIMIDVASA-LEYLHFSHSTPVIHCDL 790
           S   F  +        SL+         + D    +I      LE L + H   ++H D+
Sbjct: 75  SENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDI 134

Query: 791 KPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           K  NV            DFG  + L G     +T T  T+ YMAP
Sbjct: 135 KGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFT-GTLQYMAP 178

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 33/168 (19%)

Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG G FG V  G  + G +VA+K   +N A A ++F AE  VM  +RH N V+ +     
Sbjct: 14  IGKGEFGDVMLGD-YRGNKVAVKCI-KNDATA-QAFLAEASVMTQLRHSNLVQLLGVIVE 70

Query: 743 E--------DFKA----LDCLHSTNCSLNIFDKL-NIMIDVASALEYLHFSHSTPVIHCD 789
           E        ++ A    +D L S   S+   D L    +DV  A+EYL    +   +H D
Sbjct: 71  EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL---EANNFVHRD 127

Query: 790 LKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           L  +NV           DFG    LT + S  Q    + + + AP  L
Sbjct: 128 LAARNVLVSEDNVAKVSDFG----LTKEASSTQDTGKLPVKWTAPEAL 171

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 49/185 (26%), Positives = 71/185 (38%), Gaps = 44/185 (23%)

Query: 681 NLIGVGSFGSVYKGRLHD-------GIEVAIKVFHQNCAMALKS-FEAECEVMKNIRHRN 732
           N +G G+FG VY+G   D        I VA+K   +      K  F  E  +M N  H N
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 733 HVKRISSCSNEDFKAL--------DCLHSTNCS---------LNIFDKLNIMIDVASALE 775
            VK +  C   + + +        D L     +         L + + L+I +DVA    
Sbjct: 61  IVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCV 120

Query: 776 YLHFSHSTPVIHCDLKPKNVF---------------DFGIGR-LLTGDRSMIQTETLVTI 819
           YL   H    IH DL  +N                 DFG+ R +   D    + E L+ +
Sbjct: 121 YLEQMH---FIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPV 177

Query: 820 GYMAP 824
            +MAP
Sbjct: 178 RWMAP 182

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 42/176 (23%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFH--------QNCAMALKSFEAECEVMKNIRHRNH 733
           IG G+ G V+K +    G  VA+K            N A+       E + ++  +H   
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALR------EIKALQACQHPYV 61

Query: 734 VKRI------SSCS------NEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
           VK +      S           D   +                  M+     L+ + + H
Sbjct: 62  VKLLDVFPHGSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRML-----LKGVAYMH 116

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           +  ++H DLKP N+           DFG+ RL + +   + +  + T  Y AP LL
Sbjct: 117 ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELL 172

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 20/173 (11%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHR 731
            K+    ++G G++G V K R    G  VAIK F ++       K+   E +V++ +RH 
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHE 60

Query: 732 NHVKRISSCSNED-----FKALDC--LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
           N V    +   +      F+ ++   L     S        +   +   L+ + + HS  
Sbjct: 61  NIVNLKEAFRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHN 120

Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           +IH D+KP+N+           DFG  R L    +   T+ + T  Y AP LL
Sbjct: 121 IIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELL 173

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 8e-07
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 11/88 (12%)

Query: 299 LDNSLLGSFSLGIDLS-LPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIP 357
           LDN  L  F +  D+S L +++ +NL  N   G IP  + + + L  LD+  NSF+G IP
Sbjct: 425 LDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 358 NTIG---------LTGNPLDGVLPTSIG 376
            ++G         L GN L G +P ++G
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 28/173 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
           E +     IG G++G VYK R +  G  VAIKV         +  + E  ++K  RH N 
Sbjct: 3   EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNI 62

Query: 734 VKRISSCSNED--FKAL---------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
           V    S    D  +  +         D    T   L+   +L I       L+ L + H 
Sbjct: 63  VAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLS---ELQIAYVCRETLKGLAYLHE 119

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           T  IH D+K  N+           DFG+   LT   ++ + ++ + T  +MAP
Sbjct: 120 TGKIHRDIKGANILLTEDGDVKLADFGVSAQLT--ATIAKRKSFIGTPYWMAP 170

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 82/285 (28%), Positives = 121/285 (42%), Gaps = 39/285 (13%)

Query: 213 LALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENL 272
           L L+    L L N     +   I    SNL  L    L +NK+   +P  +  LPNL+NL
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKEL---DLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 273 VLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTI 332
            L FN+L   +P  + N+S +  +  L  + +      I+L L  +E L+L  N     +
Sbjct: 169 DLSFNDLS-DLPKLLSNLSNLNNLD-LSGNKISDLPPEIEL-LSALEELDLSNNSII-EL 224

Query: 333 PSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNI 392
            S ++N   L  L++  N                    LP SIGNLS +LE + +SN  I
Sbjct: 225 LSSLSNLKNLSGLELSNNKLED----------------LPESIGNLS-NLETLDLSNNQI 267

Query: 393 GGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLC-HL 451
             S    + +L+NL  LDL GN L+ ++P        L  L L   +L  ++   L    
Sbjct: 268 --SSISSLGSLTNLRELDLSGNSLSNALP--------LIALLLLLLELLLNLLLTLKALE 317

Query: 452 ARLNTLGLAGNKFS---GSIPSCLGNLTSLRSPDLGSNRLTSVLP 493
            +LN++ L  N  S    S P  L  L SL +     N L     
Sbjct: 318 LKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNL 362

Length = 394

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 53/195 (27%)

Query: 676 KFSKENLIGVGSFGSVYKGRLH-DGIE----VAIKVFHQ-NCAMALKSFEAECEVMKNIR 729
           +F +E  +G  +FG +YKG L+  G++    VAIK     N       F+ E  +M  + 
Sbjct: 8   RFMEE--LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELH 65

Query: 730 HRNHVKRISSCSNE-------DFKALDCLH--------------------STNCSLNIFD 762
           H N V  +   + E       ++     LH                    +   SL+  D
Sbjct: 66  HPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGD 125

Query: 763 KLNIMIDVASALEYL--HFSHSTPVIHCDLKPKNVF----------DFGIGR-LLTGDRS 809
            L+I I +A+ +EYL  HF      +H DL  +N+           D G+ R + + D  
Sbjct: 126 FLHIAIQIAAGMEYLSSHF-----FVHKDLAARNILIGEQLHVKISDLGLSREIYSADYY 180

Query: 810 MIQTETLVTIGYMAP 824
            +Q ++L+ I +M P
Sbjct: 181 RVQPKSLLPIRWMPP 195

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 51.0 bits (123), Expect = 1e-06
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 44/182 (24%)

Query: 681 NLIGVGSFGSVYKGR-LHDGIEVAIK----VFH--QNCAMALKSFEAECEVMKNIRHRN- 732
             IG G++G V        G +VAIK    VF    +    L+    E ++++++RH N 
Sbjct: 6   KPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILR----EIKLLRHLRHENI 61

Query: 733 -HVKRIS-SCSNEDFKAL---------DCLHS---TNCSLNIFDKLN-IMIDVASALEYL 777
             +  I    S EDF  +         D LH    +   L   D +   +  +   L+YL
Sbjct: 62  IGLLDILRPPSPEDFNDVYIVTELMETD-LHKVIKSPQPLTD-DHIQYFLYQILRGLKYL 119

Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ--TETLVTIGYMAPG 825
           H ++   VIH DLKP N+           DFG+ R +  D       TE +VT  Y AP 
Sbjct: 120 HSAN---VIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPE 176

Query: 826 LL 827
           LL
Sbjct: 177 LL 178

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 29/169 (17%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIK---VFHQN---CAMALKSFEAECEVMKNIRHRNHVK 735
           IG G++G VYK R    G  VAIK   +  ++      AL+    E +++K + H N +K
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALR----EIKLLKELNHPNIIK 62

Query: 736 RISSCSNEDFKAL--DCLHSTNCSL-----NIFDKLNIMIDVASALEYLHFSHSTPVIHC 788
            +    ++    L  + + +    L         +  I   +   L+ L F HS  ++H 
Sbjct: 63  LLDVFRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHR 122

Query: 789 DLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           DLKP+N+           DFG+ R          T  +VT  Y AP LL
Sbjct: 123 DLKPENLLINTEGVLKLADFGLARSFGSPVRPY-THYVVTRWYRAPELL 170

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 53/196 (27%)

Query: 676 KFSKENLIGVGSFGSVYKGRL---HDGIEVAIKVFHQ-NCAMALKSFEAECEVM--KNIR 729
           K+  E  IG G++G VYK +     DG E AIK F          S  A  E+   + ++
Sbjct: 1   KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELK 60

Query: 730 HRNHVKRISSCSNEDFKAL---------DCL-----HSTNCSLNIFDKL--NIMIDVASA 773
           H N V  +        K++         D       H     ++I   +  +++  + + 
Sbjct: 61  HENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNG 120

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGR--------LLTGDRSMI 811
           + YLH +    V+H DLKP N+               D G+ R        L   D    
Sbjct: 121 VHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDP--- 174

Query: 812 QTETLVTIGYMAPGLL 827
               +VTI Y AP LL
Sbjct: 175 ---VVVTIWYRAPELL 187

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 27/152 (17%)

Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V  G+     +VAIK+  +  +M+   F  E +VM  + H   V+ 
Sbjct: 8   FLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMKLSHEKLVQL 64

Query: 737 ISSCSNE-------DFKALDC----LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPV 785
              C+ +       ++ +  C    L            L +  DV   + YL    S   
Sbjct: 65  YGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYL---ESKQF 121

Query: 786 IHCDLKPKN----------VFDFGIGRLLTGD 807
           IH DL  +N          V DFG+ R +  D
Sbjct: 122 IHRDLAARNCLVDDQGCVKVSDFGLSRYVLDD 153

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 21/171 (12%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHR 731
           R T K  K+  +G G FG V+ G  +   +VAIK   Q  +M+ ++F AE  +MK ++H 
Sbjct: 5   RETLKLVKK--LGAGQFGEVWMGYYNGHTKVAIKSLKQG-SMSPEAFLAEANLMKQLQHP 61

Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASAL-EYLHFSHST 783
             V+  +  + E    +         ++           +N +ID+A+ + E + F    
Sbjct: 62  RLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK 121

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             IH DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 122 NYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 172

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 57/191 (29%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA--------ECEVMK 726
            ++K   IG G++G VYKGR    G  VA+K       + L+S E         E  ++K
Sbjct: 1   DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMK------KIRLESEEEGVPSTAIREISLLK 54

Query: 727 NIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNI-------------MIDVASA 773
            ++H N V              D L   +    IF+ L++              +D    
Sbjct: 55  ELQHPNIVC-----------LQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELV 103

Query: 774 LEYLH-------FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
             YL+       F HS  V+H DLKP+N+           DFG+ R   G    + T  +
Sbjct: 104 KSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAF-GIPVRVYTHEV 162

Query: 817 VTIGYMAPGLL 827
           VT+ Y AP +L
Sbjct: 163 VTLWYRAPEVL 173

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 45/190 (23%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIK-VFHQNCA-----MALKSFEAECEVMKNI 728
           K+ K   IG G+FG V+K R       VA+K V  +N        AL+    E ++++ +
Sbjct: 13  KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALR----EIKILQLL 68

Query: 729 RHRNHVKRISSCSNE---------------DFKALDC---LHSTNCSLNIFDKLNIMIDV 770
           +H N V  I  C  +               +F   D    L + N    + +   +M  +
Sbjct: 69  KHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKML 128

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR---LLTGDRSMIQTETLV 817
            + L Y+H +    ++H D+K  N+           DFG+ R   L    +    T  +V
Sbjct: 129 LNGLYYIHRNK---ILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVV 185

Query: 818 TIGYMAPGLL 827
           T+ Y  P LL
Sbjct: 186 TLWYRPPELL 195

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 47/196 (23%), Positives = 73/196 (37%), Gaps = 65/196 (33%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECE----------- 723
           +++ K   IG G++G VYK R              N  +ALK    E E           
Sbjct: 2   DQYEKVEKIGEGTYGVVYKARDR----------VTNETIALKKIRLEQEDEGVPSTAIRE 51

Query: 724 --VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNI--------------- 766
             ++K ++H N V           +  D +HS      +F+ L++               
Sbjct: 52  ISLLKEMQHGNIV-----------RLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKN 100

Query: 767 --MIDVA--SALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMI 811
             +I       L  + + HS  V+H DLKP+N+            DFG+ R   G     
Sbjct: 101 PRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF-GIPVRT 159

Query: 812 QTETLVTIGYMAPGLL 827
            T  +VT+ Y AP +L
Sbjct: 160 FTHEVVTLWYRAPEIL 175

Length = 294

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 39/186 (20%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGRLHDGIE-VAIKVFHQNC---AMALKSFEAECEVMKN 727
           R+  +F K N IG G++G VY+ R     E VA+K    +     + + S   E  ++ N
Sbjct: 4   RSVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLR-EITLLLN 62

Query: 728 IRHRNHV--------KRISS-------CSNEDFKALDCLHSTNCSLNIFDKLNIMIDVAS 772
           +RH N V        K + S       C  +D  +L  L +     +      +M+ +  
Sbjct: 63  LRHPNIVELKEVVVGKHLDSIFLVMEYC-EQDLASL--LDNMPTPFSESQVKCLMLQLLR 119

Query: 773 ALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLL-TGDRSMIQTETLVTIGY 821
            L+YLH +    +IH DLK  N          + DFG+ R      + M  T  +VT+ Y
Sbjct: 120 GLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPM--TPKVVTLWY 174

Query: 822 MAPGLL 827
            AP LL
Sbjct: 175 RAPELL 180

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 42/158 (26%)

Query: 676 KFSKENLIGVGSFGSVYKGRLHDGIE-VAIK-VFHQNCAMALKSFEA-ECEVMKNIRHRN 732
           K+ K   IG G++G+V+K +  +  E VA+K V   +    + S    E  ++K ++H+N
Sbjct: 1   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 60

Query: 733 HVKRISSCSNEDFKALDCLHSTN--------CSLNI---FDKLNIMIDVASA-------L 774
            V+             D LHS          C  ++   FD  N  ID           L
Sbjct: 61  IVRLY-----------DVLHSDKKLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFMFQLL 109

Query: 775 EYLHFSHSTPVIHCDLKPKNVF----------DFGIGR 802
           + L F HS  V+H DLKP+N+           DFG+ R
Sbjct: 110 KGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 34/167 (20%)

Query: 677 FSKENLIGVGSFGSVYKGRL-HDGIEVAIKVF---HQNCAMALKSFEAECEVM-KNIRHR 731
           F    +IG GSF +V   +      E AIK+           +K  + E EV+ +   H 
Sbjct: 3   FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHP 62

Query: 732 NHVKRISS-------------CSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLH 778
             +K   +               N +   L  +     SL+         ++  ALEYLH
Sbjct: 63  GIIKLYYTFQDEENLYFVLEYAPNGEL--LQYIR-KYGSLDEKCTRFYAAEILLALEYLH 119

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
              S  +IH DLKP+N+           DFG  ++L  + S    + 
Sbjct: 120 ---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKG 163

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 37/177 (20%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIK-VFHQNCAMALK-SFEAECEVMKNIRHRNH---VKR 736
           IGVG++G+VYK R  H G  VA+K V  Q     L  S   E  ++K +   +H   V+ 
Sbjct: 8   IGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRL 67

Query: 737 ISSC----SNEDFKALDCLHSTNCSLNIF-DKL-----------NIMIDVASALEYLHFS 780
           +  C    ++ + K        +  L  + DK+           ++M      L++L   
Sbjct: 68  MDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFL--- 124

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           H+  ++H DLKP+N+           DFG+ R+ +    M  T  +VT+ Y AP +L
Sbjct: 125 HANCIVHRDLKPENILVTSGGQVKLADFGLARIYSC--QMALTPVVVTLWYRAPEVL 179

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 34/177 (19%)

Query: 677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIK---VFHQNCAMALKSFEAECEVMKNIRHRN 732
           F  E  IG G F  VY+     D   VA+K   +F    A A +    E +++K + H N
Sbjct: 4   FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPN 63

Query: 733 HVKRISS--CSNEDFKALDCLHSTNCSLNI--FDKLNIMI----------DVASALEYLH 778
            +K + S    NE    L+   + + S  I  F K   +I           + SA+E++H
Sbjct: 64  VIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH 123

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              S  V+H D+KP NVF          D G+GR  +   +     +LV T  YM+P
Sbjct: 124 ---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSP 175

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 68/245 (27%), Positives = 104/245 (42%), Gaps = 47/245 (19%)

Query: 608 LPNLQFPKCKRRTRRKSKKKMLLLVIVLPLSTA-LIIAVPLALKYKSIRGGKSKTLRRFS 666
           LP+      K R RR+         + LPL      +AVPL L   S     S +    +
Sbjct: 12  LPSTARHTTKSRPRRRPD-------LTLPLPQRDPSLAVPLPLPPPS--SSSSSSSSSSA 62

Query: 667 YQDLFRATEKFS---KENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALK-SFEAE 721
                 A +  S   + N IG G+ G+VYK      G   A+KV + N    ++     E
Sbjct: 63  SGSAPSAAKSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICRE 122

Query: 722 CEVMKNIRHRNHVKRISSCSN--EDFKALDCL--HSTNCSL---NIFDKLNIMIDVA--- 771
            E+++++ H N VK    C +  +    +  L       SL   +I D+   + DVA   
Sbjct: 123 IEILRDVNHPNVVK----CHDMFDHNGEIQVLLEFMDGGSLEGTHIADEQ-FLADVARQI 177

Query: 772 -SALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TI 819
            S + YLH  H   ++H D+KP N+           DFG+ R+L   ++M    + V TI
Sbjct: 178 LSGIAYLHRRH---IVHRDIKPSNLLINSAKNVKIADFGVSRILA--QTMDPCNSSVGTI 232

Query: 820 GYMAP 824
            YM+P
Sbjct: 233 AYMSP 237

Length = 353

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 34/177 (19%)

Query: 677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIK---VFHQNCAMALKSFEAECEVMKNIRHRN 732
           F  E  IG G F  VY+   L DG+ VA+K   +F    A A      E +++K + H N
Sbjct: 4   FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN 63

Query: 733 HVKRISSC--SNEDFKALDCLHSTNCSLNI--FDKLNIMI----------DVASALEYLH 778
            +K  +S    NE    L+   + + S  I  F K   +I           + SALE++H
Sbjct: 64  VIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH 123

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              S  V+H D+KP NVF          D G+GR  +   +     +LV T  YM+P
Sbjct: 124 ---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSP 175

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 30/164 (18%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE   +  ++G G+FG+VYKG  + +G    I VAIK+ ++     A   F  E  
Sbjct: 3   ILKETE-LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 61

Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSL--------NIFDK--LNIMIDVASA 773
           +M ++ H + V+ +  C +   + +  L    C L        NI  +  LN  + +A  
Sbjct: 62  IMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKG 121

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD 807
           + YL       ++H DL  +NV           DFG+ RLL GD
Sbjct: 122 MMYL---EERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGD 162

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 6   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 64

Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 65  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 124

Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 125 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 172

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 51/191 (26%), Positives = 65/191 (34%), Gaps = 65/191 (34%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
           E F+    IG GSFG VYK         VAIKV      + L+  E E E +        
Sbjct: 1   ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKV------IDLEEAEDEIEDI-------- 46

Query: 734 VKRISSCSNEDFKALDCLHST--------NCSLNI----------FDKLN---------- 765
            + I   S          + T           L I           D L           
Sbjct: 47  QQEIQFLSQ-----CRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGKLDETYIA 101

Query: 766 -IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE 814
            I+ +V   LEYL   H    IH D+K  N+           DFG+   LT   +M +  
Sbjct: 102 FILREVLLGLEYL---HEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLT--STMSKRN 156

Query: 815 TLV-TIGYMAP 824
           T V T  +MAP
Sbjct: 157 TFVGTPFWMAP 167

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 41/180 (22%)

Query: 683 IGVGSFGSVYKGRLHD------GIEVAIKVFHQNCAMALK-SFEAECEVMKNIRHRNHVK 735
           +G GSFG VY+G             VAIK  ++N +M  +  F  E  VMK     + V+
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 736 RISSCSNE-------DFKALDCLHS----------TNCSLNIF---DKLNIMIDVASALE 775
            +   S         +  A   L S           N  L        + +  ++A  + 
Sbjct: 74  LLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMA 133

Query: 776 YLHFSHSTPVIHCDLKPKN----------VFDFGIGRLL-TGDRSMIQTETLVTIGYMAP 824
           YL    +   +H DL  +N          + DFG+ R +   D      + L+ + +MAP
Sbjct: 134 YL---AAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAP 190

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 26/164 (15%)

Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  ++  +VA+K       M++++F  E  +MK ++H   V+  +  + 
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTK 72

Query: 743 E-------DFKA----LDCLHSTNCSLNIFDKLNIMIDVASAL-EYLHFSHSTPVIHCDL 790
           E       ++ A    LD L S      +  KL   ID ++ + E + +      IH DL
Sbjct: 73  EEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKL---IDFSAQIAEGMAYIERKNYIHRDL 129

Query: 791 KPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           +  NV           DFG+ R++  +    +      I + AP
Sbjct: 130 RAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 173

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 52/183 (28%), Positives = 73/183 (39%), Gaps = 44/183 (24%)

Query: 677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHRNH 733
           F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H N 
Sbjct: 2   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 61

Query: 734 VKRISSCSNEDFKALDCLHSTNCSLNIFDKLN----IMIDVASALE--------YLH--- 778
           VK            LD +H+ N    +F+ L+      +D +            YL    
Sbjct: 62  VK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLL 110

Query: 779 ----FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y AP
Sbjct: 111 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYRAP 169

Query: 825 GLL 827
            +L
Sbjct: 170 EIL 172

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 19/168 (11%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    +  +G G FG V+ G  +   +VAIK       M  ++F  E ++MK +RH   V
Sbjct: 6   ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPG-TMMPEAFLQEAQIMKKLRHDKLV 64

Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASAL-EYLHFSHSTPVI 786
              +  S E    +         L+          KL  ++D+A+ + + + +      I
Sbjct: 65  PLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYI 124

Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 125 HRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAP 172

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 16/108 (14%)

Query: 318 VERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGN 377
           ++ L L      G IP+ I+    L  +++  NS  G I               P S+G+
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI---------------PPSLGS 464

Query: 378 LSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFG 425
           ++ SLE + +S  +  GSIP+ +  L++L +L+L GN L+G +P   G
Sbjct: 465 IT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 37/170 (21%)

Query: 683 IGVGSFGSVYKGRLH--DGIEVAIKVFHQNCAMAL-KSFEAECEVMKNIRHRNHVKRISS 739
           +G GS G VYK R H   G   A+K  H +      K    E + +++      VK    
Sbjct: 9   LGQGSSGVVYKVR-HKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVK---- 63

Query: 740 CSNEDFK------ALDC-----LHSTNCSLNIFDKLNIM---IDVASALEYLHFSHSTPV 785
           C    +K       L+      L      +    +  +      +   L+YLH      +
Sbjct: 64  CYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRH--I 121

Query: 786 IHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           IH D+KP N+           DFGI ++L  + ++ Q  T V T+ YM+P
Sbjct: 122 IHRDIKPSNLLINSKGEVKIADFGISKVL--ENTLDQCNTFVGTVTYMSP 169

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 31/181 (17%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE   K  ++G G+FG+VYKG  + DG    I VAIKV  +N +  A K    E  
Sbjct: 3   ILKETE-LKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAY 61

Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIF----------DKLNIMIDVASA 773
           VM  +      + +  C     + +  L    C L+            D LN  + +A  
Sbjct: 62  VMAGVGSPYVCRLLGICLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKG 121

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ RLL  D +    +   V I +M
Sbjct: 122 MSYL---EEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWM 178

Query: 823 A 823
           A
Sbjct: 179 A 179

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 36/159 (22%)

Query: 699 GIEVAIKVF---HQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF---------- 745
           G EVAIK+              F  E  +   + H N V  + S                
Sbjct: 3   GHEVAIKLLRTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPPGLLFAVFEYVP 62

Query: 746 -KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKN---------- 794
            + L  + + + +L   +   +M+ V  AL     +H+  ++H DLKP+N          
Sbjct: 63  GRTLREVLAADGALPAGETGRLMLQVLDALAC---AHNQGIVHRDLKPQNIMVSQTGVRP 119

Query: 795 ---VFDFGIGRLLTG----DRSMI--QTETLVTIGYMAP 824
              V DFGIG LL G    D + +   TE L T  Y AP
Sbjct: 120 HAKVLDFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAP 158

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 27/153 (17%)

Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V+ G+    I+VAIK  ++  AM+ + F  E +VM  + H   V+ 
Sbjct: 8   FMKE--LGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQL 64

Query: 737 ISSCSNE-------DFKALDC-LHSTNCSLNIFDK---LNIMIDVASALEYLHFSHSTPV 785
              C+ +       +F    C L+          K   L++  DV   +EYL  +     
Sbjct: 65  YGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNS---F 121

Query: 786 IHCDLKPKN----------VFDFGIGRLLTGDR 808
           IH DL  +N          V DFG+ R +  D 
Sbjct: 122 IHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDE 154

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 31/166 (18%)

Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC-S 741
           IG G FG+V +G  + G +VA+K     C +  ++F  E  VM  + H+N V+ +     
Sbjct: 14  IGEGEFGAVLQGE-YTGQKVAVKNI--KCDVTAQAFLEETAVMTKLHHKNLVRLLGVILH 70

Query: 742 NEDFKALDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLK 791
           N  +  ++ +   N            +++   L   +DVA  +EYL    S  ++H DL 
Sbjct: 71  NGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYL---ESKKLVHRDLA 127

Query: 792 PKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            +N+           DFG+ R+     SM    + + + + AP  L
Sbjct: 128 ARNILVSEDGVAKVSDFGLARV----GSMGVDNSKLPVKWTAPEAL 169

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 42/168 (25%), Positives = 62/168 (36%), Gaps = 34/168 (20%)

Query: 683 IGVGSFGSVYKGRLH--DGIEVAIKVFHQNCAMAL-KSFEAECEVMKNIRHRNHVKRISS 739
           +G G+ G V K   H   G  +A+K        A+ K    E +++        V    +
Sbjct: 9   LGAGNSGVVSKVL-HRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGA 67

Query: 740 CSNEDFKALDCLHSTNC-SLNIFDKL-----------NIMIDVASALEYLHFSHSTPVIH 787
             N    ++ C+   +  SL+   K             I + V   L YLH  H   +IH
Sbjct: 68  FYNNGDISI-CMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHK--IIH 124

Query: 788 CDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
            D+KP N+           DFG+   L    +     T V T  YMAP
Sbjct: 125 RDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAK----TFVGTSSYMAP 168

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 46/174 (26%)

Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G+FG VYK +  + G+  A K+        L+ F  E +++   +H N V    +  
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYF 72

Query: 742 NE----------DFKALDCLHSTNCSLNIFDKLN----------IMIDVASALEYLHFSH 781
            E          D  ALD         +I  +L           +   +  AL +LH   
Sbjct: 73  YENKLWILIEFCDGGALD---------SIMLELERGLTEPQIRYVCRQMLEALNFLH--- 120

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGY-MAP 824
           S  VIH DLK  N+           DFG+        ++ + +T +   Y MAP
Sbjct: 121 SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNK--STLQKRDTFIGTPYWMAP 172

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 48/170 (28%), Positives = 67/170 (39%), Gaps = 31/170 (18%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           IGVG+   VY    L +  +VAIK    + C  ++     E + M    H N VK  +S 
Sbjct: 9   IGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSF 68

Query: 741 SNED--------FKALDCLH--STNCSLNIFDKLNI---MIDVASALEYLHFSHSTPVIH 787
              D              L    ++      D+  I   + +V   LEYLH   S   IH
Sbjct: 69  VVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIH 125

Query: 788 CDLKPKNVF----------DFGIGRLL--TGDRSMIQTETLV-TIGYMAP 824
            D+K  N+           DFG+   L   GDR+    +T V T  +MAP
Sbjct: 126 RDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAP 175

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 673 ATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
             E       +G G FG V+ G  +   +VA+K       M+ +SF  E ++MK +RH  
Sbjct: 4   PRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPG-TMSPESFLEEAQIMKKLRHDK 62

Query: 733 HVKRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTP 784
            V+  +  S E    +    S    L+          KL  ++D+A+ +   + +     
Sbjct: 63  LVQLYAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN 122

Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            IH DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 123 YIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAP 172

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 30/185 (16%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFHQNCAM---ALKSFEAECEVMK 726
           F    ++     IG G++G V        G +VAIK       +   A ++   E ++++
Sbjct: 1   FDVGSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLR-ELKILR 59

Query: 727 NIRHRNHV--KRISSCSNEDFK----ALDCLHSTNCSLNIFDKLNIMIDVASALEY---- 776
           + +H N +  + I      DFK     +D L  ++    I     +  +      Y    
Sbjct: 60  HFKHDNIIAIRDILRPPGADFKDVYVVMD-LMESDLHHIIHSDQPLTEEHIRYFLYQLLR 118

Query: 777 -LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG---DRSMIQTETLVTIGYM 822
            L + HS  VIH DLKP N+           DFG+ R L+    +     TE + T  Y 
Sbjct: 119 GLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYR 178

Query: 823 APGLL 827
           AP LL
Sbjct: 179 APELL 183

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 44.8 bits (107), Expect = 9e-05
 Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 57/159 (35%)

Query: 683 IGVGSFGSVYKGRLHDGIE-VAIKVFHQNCAMALKSFEAEC----EVMKNIR----HRNH 733
           +G G+FGSVY  R  +  E VAIK   +       S+E EC    EV K++R    H N 
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMKK----KFYSWE-ECMNLREV-KSLRKLNEHPNI 60

Query: 734 VKRISSCSNEDFKALDCLHST--NCSLNIFD-------KL-------NIMIDVASALEYL 777
           VK       E F+  D L+        N++        K        +I+  +   L ++
Sbjct: 61  VKLK-----EVFRENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHI 115

Query: 778 H----FSHSTPVIHCDLKPKNVF----------DFGIGR 802
           H    F       H DLKP+N+           DFG+ R
Sbjct: 116 HKHGFF-------HRDLKPENLLVSGPEVVKIADFGLAR 147

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 34/188 (18%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGRLHD-GIEVAIK---VFHQNCAMALKSFEAECEVMKN 727
           R  +KF     IG G++G VYK R  D G  VA+K   + ++     + +   E ++++ 
Sbjct: 4   RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIR-EIKILRQ 62

Query: 728 IRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNI---------MID-----VAS- 772
           + HRN V  +     +   ALD          +F+ ++          ++      + S 
Sbjct: 63  LNHRNIV-NLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSF 121

Query: 773 ---ALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTI 819
               LE L++ H    +H D+K  N+           DFG+ RL   + S   T  ++T+
Sbjct: 122 MKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITL 181

Query: 820 GYMAPGLL 827
            Y  P LL
Sbjct: 182 WYRPPELL 189

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 12/221 (5%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLA-R 453
              + + NL  L  LDL  N+L  +I      L  L  L L  N +   IP  +  L   
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSN 141

Query: 454 LNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           L  L L+ NK   S+PS L NL +L++ DL  N L+  LP    NL ++   DLS N + 
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKI- 198

Query: 514 GPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY--- 570
             L  +I  L  +  ++LS N+   ++ S++ +LK+L  + L+ N LE  +PES G    
Sbjct: 199 SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSN 256

Query: 571 LTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNL 611
           L  L+LS N++   I   G   N       GN     LP +
Sbjct: 257 LETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLI 296

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKL 440
           +L+++ +SN  +          L NL +LDL GN LT   P  F  L  L+ L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 28/169 (16%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA-ECEVMKNIRHRNHVKRISSC 740
           +G G++ +VYKGR    G  VA+K  H +      S    E  +MK ++H N V+     
Sbjct: 8   LGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVI 67

Query: 741 SNE------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHC 788
             E            D K     H    +L+     +    +   L+ + F H   V+H 
Sbjct: 68  HTENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQL---LKGIAFCHENRVLHR 124

Query: 789 DLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           DLKP+N+           DFG+ R      +    E +VT+ Y AP +L
Sbjct: 125 DLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNE-VVTLWYRAPDVL 172

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 51/192 (26%), Positives = 73/192 (38%), Gaps = 62/192 (32%)

Query: 677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECE-----------V 724
           + K   IG G++G VYK R    G  VA+K             E E E           +
Sbjct: 1   YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIR---------LETEDEGVPSTAIREISL 51

Query: 725 MKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLN------------IMIDVAS 772
           +K + H N V+            LD +HS N    +F+ L+              +D   
Sbjct: 52  LKELNHPNIVR-----------LLDVVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPL 100

Query: 773 ALEYLH-------FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
              YL+       + HS  V+H DLKP+N+           DFG+ R   G      T  
Sbjct: 101 IKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAF-GVPVRTYTHE 159

Query: 816 LVTIGYMAPGLL 827
           +VT+ Y AP +L
Sbjct: 160 VVTLWYRAPEIL 171

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|111949 pfam03109, ABC1, ABC1 family

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFH 708
            +F +E  I   S   V++  L DG EVA+KV  
Sbjct: 12  AEFDEEP-IAAASIAQVHRAVLKDGEEVAVKVQR 44

This family includes ABC1 from yeast and AarF from E. coli. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex and E. coli AarF is required for ubiquinone production. It has been suggested that members of the ABC1 family are novel chaperonins. These proteins are unrelated to the ABC transporter proteins. Length = 117

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 28/176 (15%)

Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIK--VFHQNCAMA----LKSFEAECEVMKNIRH 730
           ++K  ++G G++G+VY G  + G  +A+K      +  +A     +  + E +++K+++H
Sbjct: 2   WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKH 61

Query: 731 RNHVKRISSCSNED----FKALDCLHSTNCSLNIFDKLNIMI---DVASALEYLHFSHST 783
            N V+ + +C +++    F       S +  LN F  L   +        L+ + + H+ 
Sbjct: 62  VNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNN 121

Query: 784 PVIHCDLKPKNVF----------DFGIGRLL-----TGDRSMIQTETLVTIGYMAP 824
            V+H D+K  NV           DFG  R L      G  S +      T  +MAP
Sbjct: 122 CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAP 177

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 34/189 (17%)

Query: 665 FSYQDLFRAT----EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFH---QNCAMALK 716
           F  Q+L +      +++   + +G G++G V        G +VAIK      Q+   A +
Sbjct: 1   FYRQELNKTVWEVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKR 60

Query: 717 SFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID-- 769
           ++  E  ++K++ H N +  +     + S EDF+ +  + H     LN   K   + D  
Sbjct: 61  TYR-ELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKCQKLSDDH 119

Query: 770 ----VASALEYLHFSHSTPVIHCDLKPKNV----------FDFGIGRLLTGDRSMIQTET 815
               V   L  L + HS  +IH DLKP N+           DFG+ R    D  M  T  
Sbjct: 120 IQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHT--DDEM--TGY 175

Query: 816 LVTIGYMAP 824
           + T  Y AP
Sbjct: 176 VATRWYRAP 184

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 32/168 (19%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFE---AECEVMKNIRHRNHVKRIS 738
           +G GSFG V   R    G   A+KV  +   +  K  E    E  ++  I H   VK   
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60

Query: 739 SCSNED--FKALDC-----LHSTNCSLNIFD----KLNIMIDVASALEYLHFSHSTPVIH 787
           +   E+  +  L+      L S       F     +     ++  ALEYLH S    +I+
Sbjct: 61  AFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARF-YAAEIVLALEYLH-SLG--IIY 116

Query: 788 CDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
            DLKP+N+           DFG+ +         +T T   T  Y+AP
Sbjct: 117 RDLKPENILLDADGHIKLTDFGLAK--ELSSEGSRTNTFCGTPEYLAP 162

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 453 RLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
            L +L L+ N+ +         L +L+  DL  N LTS+ P  F  L  +   DLS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 31/171 (18%)

Query: 682 LIGVGSFGSVYKGRLH----DGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHRNHVKR 736
            +G GSFG V +G         I VA+K       +  +  F  E  +M ++ H N ++ 
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRL 61

Query: 737 ISSCSNEDFKA----------LDCLH-STNCSLNIFDKLNIMIDVASALEYLHFSHSTPV 785
                                LD L         I    +  + +A+ + YL        
Sbjct: 62  YGVVLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKR---F 118

Query: 786 IHCDLKPKNVF----------DFGIGR-LLTGDRSMIQTETL-VTIGYMAP 824
           IH DL  +N+           DFG+ R L   +   +  E L V   + AP
Sbjct: 119 IHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAP 169

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 40/179 (22%)

Query: 683 IGVGSFGSVYKGR-LHDGIE-VAIK---VFHQNCAMALKSFEAECEVMKNIR---HRNHV 734
           IG G++G V+K R L +G   VA+K   V      M L +   E  V++++    H N V
Sbjct: 9   IGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIR-EVAVLRHLETFEHPNVV 67

Query: 735 KRISSCS----NEDFKALDCLHSTNCSLNIF-DKL-----------NIMIDVASALEYLH 778
           +    C+    + + K        +  L  + DK+           ++M  +   L++LH
Sbjct: 68  RLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH 127

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            SH   V+H DLKP+N+           DFG+ R+ +    M  T  +VT+ Y AP +L
Sbjct: 128 -SHR--VVHRDLKPQNILVTSSGQIKLADFGLARIYS--FQMALTSVVVTLWYRAPEVL 181

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 46/185 (24%)

Query: 683 IGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           +G G+FG V+    +      D + VA+K        A K F+ E E++ N++H + VK 
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 72

Query: 737 ISSCSNED-----FKAL--------------DCL-------HSTNCSLNIFDKLNIMIDV 770
              C + D     F+ +              D +             L +   L+I   +
Sbjct: 73  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQI 132

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR-LLTGDRSMIQTETLVTI 819
           AS + YL   H    +H DL  +N            DFG+ R + + D   +   T++ I
Sbjct: 133 ASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPI 189

Query: 820 GYMAP 824
            +M P
Sbjct: 190 RWMPP 194

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 61/190 (32%)

Query: 676 KFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVF-----HQNCAMALKSFEAECEVMKNIR 729
           ++ K  L+G GSFGSVY+G  L DG   A+K        Q    A+K  E E  ++  ++
Sbjct: 1   RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQ 60

Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKL-------NIMIDVAS---------- 772
           H N V+ + +   ED            +L IF +L        ++    S          
Sbjct: 61  HPNIVQYLGTEREED------------NLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYT 108

Query: 773 -----ALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT---GDRSMIQTE 814
                 LEYLH  +    +H D+K  N+           DFG+ + +      +S   + 
Sbjct: 109 RQILLGLEYLHDRN---TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSP 165

Query: 815 TLVTIGYMAP 824
                 +MAP
Sbjct: 166 Y-----WMAP 170

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 51/205 (24%), Positives = 73/205 (35%), Gaps = 51/205 (24%)

Query: 671 FRATEKFS-KENLIGVGSFGSVYKGR-LHDGIEVAIK------------VFHQNCAMALK 716
           F  +E++  K   +G G++G V K      G  VAIK               Q   M   
Sbjct: 4   FSISERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGI 63

Query: 717 SFEA--ECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLHS-------TNCSLNIFDKLN 765
            F    E ++M  I+H N +  +      DF  L  D + S           L       
Sbjct: 64  HFTTLRELKIMNEIKHENIMGLVDVYVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKC 123

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR------------- 802
           I++ + + L  LH  +    +H DL P N+F          DFG+ R             
Sbjct: 124 ILLQILNGLNVLHKWY---FMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSK 180

Query: 803 LLTGDRSMIQTETLVTIGYMAPGLL 827
             T  R    T  +VT+ Y AP LL
Sbjct: 181 DETMQRREEMTSKVVTLWYRAPELL 205

Length = 335

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 33/188 (17%)

Query: 665 FSYQDLFRAT----EKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALK 716
           F  +++ +      E+++    +G G++GSV        G +VAIK      Q+   A +
Sbjct: 1   FYREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKR 60

Query: 717 SFEAECEVMKNIRHRN-------HVKRISSCSNEDFKALDCLHSTNCSLNIFDKLN---I 766
           ++  E  ++K+++H N           +S    +DF  +     T+    +   L+   +
Sbjct: 61  AYR-ELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQTDLQKIMGHPLSEDKV 119

Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETL 816
              V   L  L + HS  +IH DLKP N          + DFG+ R    D  M  T  +
Sbjct: 120 QYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLAR--HADAEM--TGYV 175

Query: 817 VTIGYMAP 824
           VT  Y AP
Sbjct: 176 VTRWYRAP 183

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 53/177 (29%)

Query: 683 IGVGSFGSVYKGRLHDGIEV-AIKVFHQNCAMALKSFE---AECEVMKNIRHRNHVKRIS 738
           +G GSFG V   R     +  A+K+  +   + LK  E    E  ++++IRH   V    
Sbjct: 9   LGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYG 68

Query: 739 SCSNEDFKALDCLHSTNCSL--------NIFDKLNIM----IDVA--------SALEYLH 778
           S     F+       +N  L         +F  L         VA         ALEYLH
Sbjct: 69  S-----FQ-----DDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLH 118

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              S  +++ DLKP+N+           DFG  + + G      T TL  T  Y+AP
Sbjct: 119 ---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR-----TYTLCGTPEYLAP 167

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 13/67 (19%)

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSM--IQTETLVTIG 820
           L  L + HS  V+H DLKP NVF           DFG+ R++    S     +E LVT  
Sbjct: 124 LRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKW 183

Query: 821 YMAPGLL 827
           Y +P LL
Sbjct: 184 YRSPRLL 190

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 61/186 (32%)

Query: 682 LIGVGSFGSVYKGRLHD---GIEVAIKVFH-----QNCAMALKSFEAECEVMKNIRHRNH 733
           L+G G+FG VY    +D   G E+A+K              + + E E +++KN++H   
Sbjct: 9   LLGQGAFGRVY--LCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQH-ER 65

Query: 734 VKRISSCSNED------------------FKALDCLHSTNCSLNIFDKLNIMIDVASALE 775
           + +   C  +D                   KA   L     +  +  K    I     LE
Sbjct: 66  IVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGAL-----TETVTRKYTRQI-----LE 115

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-------TGDRSMIQTETLVT 818
            + + HS  ++H D+K  N+           DFG  + L       TG +S+  T     
Sbjct: 116 GVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPY--- 172

Query: 819 IGYMAP 824
             +M+P
Sbjct: 173 --WMSP 176

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSI--FTMHKLKFLDFSDN 156
           +  L++S  +  G+IP  LG L+SL  LNL+ N LSG +P ++    +H+  F +F+DN
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF-NFTDN 525

Length = 623

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 43/163 (26%)

Query: 680 ENLIGVGSFGSVYKGRL-HDG---IEVAIKVF------HQNCAMALKSFEAECEVMKNIR 729
           E +IG G FG V +GRL   G   I VAIK         Q      + F +E  +M    
Sbjct: 9   EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQR-----RDFLSEASIMGQFD 63

Query: 730 HRN--HVKRISSCSNEDFKALDCLHSTNCSLNIFDKLN-----------IMIDVASALEY 776
           H N  H++ + + S       + +   N +L+ F + N           ++  +A+ ++Y
Sbjct: 64  HPNIIHLEGVVTKSRPVMIITEFME--NGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKY 121

Query: 777 LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS 809
           L        +H DL  +N+           DFG+ R L  D S
Sbjct: 122 L---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 161

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 99  RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQL 158
            + +L++S+  L          L +L  L+LS N L+   P +   +  L+ LD S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 30/171 (17%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMAL--KSFEAECEVMKNIRHRNHVKRISS 739
           +G GS+G V   R   DG +  IK  +   A     K+ E E +++  ++H N V    S
Sbjct: 8   VGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRES 67

Query: 740 CSNED---------FKALDCLHSTNCS----LNIFDKLNIMIDVASALEYLHFSHSTPVI 786
              ED          +  D  H         L     +   + +A AL+YLH  H   ++
Sbjct: 68  WEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKH---IL 124

Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           H DLK +NVF          D GI R+L     M  T  + T  YM+P L 
Sbjct: 125 HRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMAST-LIGTPYYMSPELF 174

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 32/182 (17%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR--LHDGIEVA---IKVFHQNCA--MALKSFEAECE 723
           F   E + K + +G G++ +V+KGR  L + + VA   I++ H+  A   A++    E  
Sbjct: 1   FGKLETYVKLDKLGEGTYATVFKGRSKLTENL-VALKEIRLEHEEGAPCTAIR----EVS 55

Query: 724 VMKNIRHRNHVK-----RISSCSNEDFKALDC---LHSTNCSLNIFDKLNIMIDVASALE 775
           ++KN++H N V          C    F+ LD     +  NC  N+    N+ I +   L 
Sbjct: 56  LLKNLKHANIVTLHDIIHTERCLTLVFEYLDSDLKQYLDNCG-NLMSMHNVKIFMFQLLR 114

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPG 825
            L + H   ++H DLKP+N+           DFG+ R  +        E +VT+ Y  P 
Sbjct: 115 GLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNE-VVTLWYRPPD 173

Query: 826 LL 827
           +L
Sbjct: 174 VL 175

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 48/180 (26%)

Query: 683 IGVGSFGSVY---KGRLHDGIEVAIKVFHQNCA-----MALKSFEAECEVMKNIRHRNHV 734
           I  G++G V+   K    D    AIKV     A       +     E +++   +    V
Sbjct: 1   ISKGAYGRVFLAKKKSTGD--IYAIKVI--KKADMIRKNQVDQVLTERDILSQAQSPYVV 56

Query: 735 KRISS-------------CSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
           K   S                 D  +L  L +        D+    I +A  +  L + H
Sbjct: 57  KLYYSFQGKKNLYLVMEYLPGGDLASL--LENVGS----LDEDVARIYIAEIVLALEYLH 110

Query: 782 STPVIHCDLKPKNVF----------DFG------IGRLLTGDRSMIQTETLV-TIGYMAP 824
           S  +IH DLKP N+           DFG      + R +  +    + + +V T  Y+AP
Sbjct: 111 SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAP 170

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 40/186 (21%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR--LHDGIEVA---IKVFHQNCA--MALKSFEAECE 723
           F   E + K + +G G++ +VYKGR  L D + VA   I++ H+  A   A++    E  
Sbjct: 2   FGKLETYIKLDKLGEGTYATVYKGRSKLTDNL-VALKEIRLEHEEGAPCTAIR----EVS 56

Query: 724 VMKNIRHRNHVKRISSCSNED-----FKALDC---LHSTNCSLNIFDKLNIMIDVASALE 775
           ++K+++H N V        E      F+ LD     +  +C  N  +  N+ + +   L 
Sbjct: 57  LLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCG-NSINMHNVKLFLFQLLR 115

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET----LVTIGY 821
            L++ H   V+H DLKP+N+           DFG+ R  +     I T+T    +VT+ Y
Sbjct: 116 GLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKS-----IPTKTYSNEVVTLWY 170

Query: 822 MAPGLL 827
             P +L
Sbjct: 171 RPPDIL 176

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 49/196 (25%)

Query: 673 ATEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNCAMALK-SFEAECEVM 725
           +T +F +E  +G   FG VYKG L           VAIK         L+  F+ E  + 
Sbjct: 5   STVRFMEE--LGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMR 62

Query: 726 KNIRHRNHVKRI-------------SSCSNED---FKALDCLHS----------TNCSLN 759
             ++H N V  +             S CS+ D   F  +   HS             +L 
Sbjct: 63  SRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLE 122

Query: 760 IFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR-LLTGDR 808
             D ++I+  +A+ +E+L   H   V+H DL  +NV           D G+ R +   D 
Sbjct: 123 PADFVHIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDKLNVKISDLGLFREVYAADY 179

Query: 809 SMIQTETLVTIGYMAP 824
             +   +L+ I +M+P
Sbjct: 180 YKLMGNSLLPIRWMSP 195

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 20/72 (27%)

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           I + +  ALEYLH   S  VIH D+KP NV           DFGI   L    S+ +T  
Sbjct: 108 IAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLVD--SVAKT-- 161

Query: 816 LVTIG---YMAP 824
            +  G   YMAP
Sbjct: 162 -IDAGCKPYMAP 172

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 31/184 (16%)

Query: 666 SYQDLF--RATEK-FSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFE-- 719
              +LF     EK F+    IG GSFG+VY  R +     VAIK    +   + + ++  
Sbjct: 3   EIAELFSKDDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDI 62

Query: 720 -AECEVMKNIRHRNHVKRISSCSNEDFKAL----DCLHSTNCSLNIFDK----LNIMIDV 770
             E   ++ +RH N ++    C   +  A      CL S +  L +  K    + I    
Sbjct: 63  IKEVRFLQQLRHPNTIE-YKGCYLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAIC 121

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
             AL+ L + HS   IH D+K  N+           DFG   L++   S + T       
Sbjct: 122 HGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPY----- 176

Query: 821 YMAP 824
           +MAP
Sbjct: 177 WMAP 180

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 43/182 (23%)

Query: 683 IGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           +G G+FG V+    +      D I VA+K        A K F  E E++ N++H + VK 
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 72

Query: 737 ISSCSNEDFKALDCLHSTNCSLNIFDK-----------------------LNIMIDVASA 773
              C   D   +   +  +  LN F +                       L+I   +A+ 
Sbjct: 73  YGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAG 132

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR-LLTGDRSMIQTETLVTIGYM 822
           + YL   H    +H DL  +N            DFG+ R + + D   +   T++ I +M
Sbjct: 133 MVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWM 189

Query: 823 AP 824
            P
Sbjct: 190 PP 191

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 53/169 (31%)

Query: 676 KFSKENLIGVGSFGSVYKGRLH--DGIEVAIK------VFHQNC---AMALKSFEAECEV 724
           K+ K  LIG GSFGSVY G ++   G  +A+K      V   +       L +   E  +
Sbjct: 1   KWIKGALIGSGSFGSVYLG-MNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIAL 59

Query: 725 MKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIF------DKLNIMIDVASALEY-- 776
           +K ++H N V+ + S  + D             LNIF        +  +++   A E   
Sbjct: 60  LKELQHENIVQYLGSSLDADH------------LNIFLEYVPGGSVAALLNNYGAFEETL 107

Query: 777 -----------LHFSHSTPVIHCDLKPKNVF----------DFGIGRLL 804
                      L++ H+  +IH D+K  N+           DFGI + L
Sbjct: 108 VRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKL 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 26/171 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
           +K+++   IG G+ G+VY    +  G EVAIK  +       +    E  VM+  +H N 
Sbjct: 19  KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNI 78

Query: 734 VKRISS--CSNEDFKALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
           V  + S    +E +  ++ L         T   +   D+  I       L+ L F HS  
Sbjct: 79  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCM---DEGQIAAVCRECLQALEFLHSNQ 135

Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGY-MAP 824
           VIH D+K  N+           DFG    +T ++S  +  T+V   Y MAP
Sbjct: 136 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAP 184

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 46/187 (24%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIK---VFHQNCAMALKSFEAECEVMKNIRHRNHVKRIS 738
           +G G+FG VYK R +  G  VA+K   + ++     + +   E +++K ++H N V  I 
Sbjct: 16  LGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALR-EIKILKKLKHPNVVPLID 74

Query: 739 ---SCSNEDFKALDC---------------LHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
                 ++  +                   L + +  L        M+ +   + YLH +
Sbjct: 75  MAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHEN 134

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ----------TETLVTIG 820
           H   ++H D+K  N+           DFG+ R   G     +          T  +VT  
Sbjct: 135 H---ILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRW 191

Query: 821 YMAPGLL 827
           Y  P LL
Sbjct: 192 YRPPELL 198

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 44/180 (24%)

Query: 677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRH---R 731
           + +  LIG G++G+VY+G+ +  G  VA+K+ + +     +   + E  ++  +R     
Sbjct: 3   YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPP 62

Query: 732 NHVKRISS-------------CSNEDFKAL---DCLHSTNCSLNIFDKLNIMIDVASALE 775
           N  K   S                   + L     +     S+       I+ +V  AL+
Sbjct: 63  NITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISV-------IIREVLVALK 115

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGY-MAP 824
           Y+H      VIH D+K  N+           DFG+  LL  + S  +  T V   Y MAP
Sbjct: 116 YIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS--KRSTFVGTPYWMAP 170

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 27/175 (15%)

Query: 676 KFSKENLIGVGSFGSVYK-GRLHDGIEVAIKVF--HQNCAMALKSFEAECEVMKNIRHRN 732
           K+ K  ++G G+FG V+   R  D   V IK     Q       + + EC+V+K + H N
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN 60

Query: 733 HVKRISSCSNEDFKALDCLHSTNCSLN--IFDKLNIMIDVASALEY-------LHFSHST 783
            ++   +   +    +   ++   +L   I  + N ++D  + L +       LH  H+ 
Sbjct: 61  IIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK 120

Query: 784 PVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGL 826
            ++H DLK +N+            DFGI ++L+   S  +  T+V T  Y++P L
Sbjct: 121 LILHRDLKTQNILLDKHKMVVKIGDFGISKILS---SKSKAYTVVGTPCYISPEL 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 16/70 (22%)

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI-GRLLTGDRSMIQTE 814
           + + +  AL YL   H   VIH D+KP N+           DFGI GRL+    S  +T 
Sbjct: 119 MTVAIVKALHYLKEKHG--VIHRDVKPSNILLDASGNVKLCDFGISGRLVD---SKAKTR 173

Query: 815 TLVTIGYMAP 824
           +     YMAP
Sbjct: 174 SAGCAAYMAP 183

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 34/180 (18%)

Query: 675 EKFSKENLIGVGSFGSV---YKGRLHDGIEVAIKVFH---QNCAMALKSFEAECEVMKNI 728
           E++     +G G++GSV   Y  RL    +VA+K      Q+   A +++  E  ++K++
Sbjct: 15  ERYQNLTPVGSGAYGSVCSAYDTRLRQ--KVAVKKLSRPFQSLIHARRTYR-ELRLLKHM 71

Query: 729 RHRNHVKRIS----SCSNEDFKALDCLHS-TNCSLNIFDKLNIMID------VASALEYL 777
           +H N +  +     + S E+F  +  + +     LN   K   + D      +   L  L
Sbjct: 72  KHENVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGL 131

Query: 778 HFSHSTPVIHCDLKPKNV----------FDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            + HS  +IH DLKP NV           DFG+ R    D  M  T  + T  Y AP ++
Sbjct: 132 KYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLAR--QADDEM--TGYVATRWYRAPEIM 187

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 60/187 (32%)

Query: 683 IGVGSFG---SVYKGRLHDGIEVAIK----VFHQNCAMALKSFEAECEVMKNIRHRNHVK 735
           IG G+FG   SV   R  DG  VA+K    VF     ++ K    E +++   +H N + 
Sbjct: 8   IGYGAFGVVWSVTDPR--DGKRVALKKMPNVFQN--LVSCKRVFRELKMLCFFKHDNVLS 63

Query: 736 RISSCSNEDFKALDCLHSTNCSL--NIF--------DKLNIMI---------------DV 770
                      ALD L   +      I+        D   I++                +
Sbjct: 64  -----------ALDILQPPHIDPFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQI 112

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+YLH +    ++H D+KP N+           DFG+ R+   D S   T+ +VT  
Sbjct: 113 LRGLKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQY 169

Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 170 YRAPEIL 176

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 14/70 (20%)

Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
           +  + SA+ Y+H      ++H D+K  N+F          DFGI ++L  + SM +T  +
Sbjct: 107 LFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAET-VV 162

Query: 817 VTIGYMAPGL 826
            T  YM+P L
Sbjct: 163 GTPYYMSPEL 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 44/169 (26%)

Query: 675 EKFSKENLIGVGSFGSVYKGRL-HDGIEV--AIKVFHQNCAMA-LKSFEAECEVMKNI-R 729
           E    E++IG G+FG V +  +  DG+++  AIK+  +  +    + F  E EV+  +  
Sbjct: 2   EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGH 61

Query: 730 HRNHVKRISSCSNEDF-----------KALDCL---------------HSTNCSLNIFDK 763
           H N +  + +C N  +             LD L               H T  +L     
Sbjct: 62  HPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQL 121

Query: 764 LNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR 802
           L    DVA+ ++YL        IH DL  +NV           DFG+ R
Sbjct: 122 LQFASDVATGMQYL---SEKQFIHRDLAARNVLVGENLASKIADFGLSR 167

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 49/228 (21%), Positives = 79/228 (34%), Gaps = 47/228 (20%)

Query: 316 PNVERLNLGLN------RFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDG 369
           P+++ L L LN      R   ++   +T    L  LD+  N+                DG
Sbjct: 51  PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP-------------DG 97

Query: 370 VLPTSIGNLSMSLENIYISNCNIGGSIPQLI-----SNLSNLLLLDLEGNKLTG----SI 420
                    S SL+ + ++N  +G    +L+          L  L L  N+L G    ++
Sbjct: 98  CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157

Query: 421 PVTFGRLQKLQGLYLPFNKLAGSIPDQLC----HLARLNTLGLAGNKF----SGSIPSCL 472
                  + L+ L L  N +  +    L         L  L L  N      + ++   L
Sbjct: 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217

Query: 473 GNLTSLRSPDLGSNRLTSV--------LPSTFWNLKDILFFDLSSNSL 512
            +L SL   +LG N LT          L S   +L  +    LS N +
Sbjct: 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL---SLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G+FG VYK +  + G   A KV        L+ +  E E++    H   VK + +  
Sbjct: 20  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFY 79

Query: 742 NE-------DFKALDCLHSTNCSLNI-FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPK 793
            +       +F     + +    L+    +  I +     LE L + HS  +IH DLK  
Sbjct: 80  WDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAG 139

Query: 794 NVF----------DFGI 800
           NV           DFG+
Sbjct: 140 NVLLTLDGDIKLADFGV 156

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 47/183 (25%)

Query: 682 LIGVGSFGSVYKGRLHDGIE--VAIK-VFHQNCAMAL------KSFE---AECEVMK-NI 728
            +G G+FG VYK R  +  +  +A+K +   N A         KS     +E  ++K  +
Sbjct: 7   HLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQL 66

Query: 729 RHRNHVKR----------------ISSCS-NEDFKALDCLHSTNCSLNIFDKLNIMIDVA 771
           RH N V+                 I      E F +L           I+   NI + + 
Sbjct: 67  RHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIW---NIFVQMV 123

Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGY 821
            AL YLH      ++H DL P N+           DFG+ +    +  +  T  + TI Y
Sbjct: 124 LALRYLH--KEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKL--TSVVGTILY 179

Query: 822 MAP 824
             P
Sbjct: 180 SCP 182

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 41/159 (25%)

Query: 682 LIGVGSFGSVYKGRLH--DG--IEVAIKVFH-QNCAMA-LKSFEAECEVMKNIRHRNHVK 735
           ++G G FGSV +G+L   DG  ++VA+K         + ++ F +E   MK+  H N +K
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 736 RISSC-SNEDFKALDC------------LHSTNCSLNIFDK---------LNIMIDVASA 773
            I  C      + +              LHS      +            L  M+D+A  
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG 125

Query: 774 LEYLHFSHSTPVIHCDLKPKN----------VFDFGIGR 802
           +EYL    +   IH DL  +N          V DFG+ +
Sbjct: 126 MEYL---SNRNFIHRDLAARNCMLREDMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 45/189 (23%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA---------- 720
           R+ +++ K N I  G++G VY+ R    G  VA+K         LK  +           
Sbjct: 2   RSVDEYEKLNRIEEGTYGVVYRARDKKTGEIVALK--------KLKMEKEKEGFPITSLR 53

Query: 721 ECEVMKNIRHRN--HVKRISSCSNED--FKALDCL-HSTNCSLNIFDKL-------NIMI 768
           E  ++  ++H N   VK +   SN D  +  ++ + H     +    +         +M+
Sbjct: 54  EINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLML 113

Query: 769 DVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVT 818
            + S + +LH      ++H DLK  N+           DFG+ R   G      T+ +VT
Sbjct: 114 QLLSGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREY-GSPLKPYTQLVVT 169

Query: 819 IGYMAPGLL 827
           + Y AP LL
Sbjct: 170 LWYRAPELL 178

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 40/184 (21%), Positives = 71/184 (38%), Gaps = 45/184 (24%)

Query: 683 IGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           +G G+FG V+    H      D + VA+K   +    A + F+ E E++  ++H++ V+ 
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 737 ISSCSNEDFKALDCLHSTNCSLNIFDK-------------------------LNIMIDVA 771
              C+      +   +  +  LN F +                         L I   +A
Sbjct: 73  YGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIA 132

Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR-LLTGDRSMIQTETLVTIG 820
           S + YL   H    +H DL  +N            DFG+ R + + D   +   T++ I 
Sbjct: 133 SGMVYLASLH---FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIR 189

Query: 821 YMAP 824
           +M P
Sbjct: 190 WMPP 193

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 32/182 (17%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR--LHDGIEV--AIKVFHQNCA--MALKSFEAECEV 724
           F   E + K   +G G++ +V+KGR  L + +     I++ H+  A   A++    E  +
Sbjct: 2   FGKMETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIR----EVSL 57

Query: 725 MKNIRHRNHVKRISSCSNED------FKALDC---LHSTNCSLNIFDKLNIMIDVASALE 775
           +K+++H N V  +    + D      F+ LD     +  +C  NI    N+ I +   L 
Sbjct: 58  LKDLKHANIVT-LHDIVHTDKSLTLVFEYLDKDLKQYMDDCG-NIMSMHNVKIFLYQILR 115

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPG 825
            L + H   V+H DLKP+N+           DFG+ R  +        E +VT+ Y  P 
Sbjct: 116 GLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNE-VVTLWYRPPD 174

Query: 826 LL 827
           +L
Sbjct: 175 VL 176

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 46/177 (25%)

Query: 683 IGVGSFGSVYKG--RLHDGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHRN------ 732
           +G GS+ +VYKG  R+ +G  VA+KV        +  F A  E  ++K ++H N      
Sbjct: 13  LGEGSYATVYKGISRI-NGQLVALKVISMKTEEGV-PFTAIREASLLKGLKHANIVLLHD 70

Query: 733 --HVKRISSCSNEDFKALDC----------LHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
             H K   +   E +   D           LH  N  L +F  L         L Y+H  
Sbjct: 71  IIHTKETLTFVFE-YMHTDLAQYMIQHPGGLHPYNVRLFMFQLLR-------GLAYIHGQ 122

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           H   ++H DLKP+N+           DFG+ R  +       +E +VT+ Y  P +L
Sbjct: 123 H---ILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSE-VVTLWYRPPDVL 175

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 40.3 bits (95), Expect = 0.004
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 17/76 (22%)

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT----GDRSMI 811
           IM  +  AL+Y+H   S  VIH DLKP N+           DFG+ R L+       + +
Sbjct: 112 IMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPV 168

Query: 812 QTETLVTIGYMAPGLL 827
            T+ + T  Y AP +L
Sbjct: 169 LTDYVATRWYRAPEIL 184

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 27/174 (15%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHR 731
           R + K  K+  +G G FG V+    +   +VA+K      +M++++F AE  VMK ++H 
Sbjct: 5   RESLKLEKK--LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHD 61

Query: 732 NHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASAL-EYLHFS 780
             VK  +  + E              LD L S   S     KL   ID ++ + E + F 
Sbjct: 62  KLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKL---IDFSAQIAEGMAFI 118

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
                IH DL+  N+           DFG+ R++  +    +      I + AP
Sbjct: 119 EQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 172

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	827
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.97
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.91
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.91
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.91
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.91
KOG3653	534	consensus Transforming growth factor beta/activin	99.91
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.9
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.89
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.88
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.86
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.86
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.85
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.84
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.84
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.84
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.84
KOG0198	313	consensus MEKK and related serine/threonine protei	99.84
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.83
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.83
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.83
KOG0578	550	consensus p21-activated serine/threonine protein k	99.83
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.81
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.81
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.81
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.81
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.81
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.81
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.8
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.8
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.79
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.79
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.79
PHA03212	391	serine/threonine kinase US3; Provisional	99.79
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.79
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.79
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.79
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.78
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.78
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.78
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.78
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.78
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.78
KOG0584	632	consensus Serine/threonine protein kinase [General	99.78
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.78
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.78
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.78
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.78
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.77
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.77
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.77
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.77
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.77
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.77
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.77
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.77
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.77
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.77
KOG0605	550	consensus NDR and related serine/threonine kinases	99.77
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.77
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.77
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.77
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.77
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.77
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.77
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.77
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.76
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.76
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.76
PHA03211	461	serine/threonine kinase US3; Provisional	99.76
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.76
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.76
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.76
PTZ00036	440	glycogen synthase kinase; Provisional	99.76
PTZ00267	478	NIMA-related protein kinase; Provisional	99.76
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.76
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.76
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.76
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.76
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.76
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.75
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.75
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.75
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.75
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.75
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.75
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.75
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.75
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.75
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.75
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.75
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.75
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.74
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.74
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.74
PRK09188	365	serine/threonine protein kinase; Provisional	99.74
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.74
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.74
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.74
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.74
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.74
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.74
PHA03209	357	serine/threonine kinase US3; Provisional	99.73
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.73
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.73
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.73
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.73
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.73
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.73
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.73
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.73
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.73
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.73
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.73
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.73
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.73
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.73
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.73
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PHA03207	392	serine/threonine kinase US3; Provisional	99.73
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.73
PHA02988	283	hypothetical protein; Provisional	99.73
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.73
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.72
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.72
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.72
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.72
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.72
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.72
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.72
PTZ00283	496	serine/threonine protein kinase; Provisional	99.72
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.72
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.72
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.72
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.72
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.72
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.72
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.72
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.72
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.72
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.72
KOG0589	426	consensus Serine/threonine protein kinase [General	99.71
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.71
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.71
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.71
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.71
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.71
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.71
PHA03210	501	serine/threonine kinase US3; Provisional	99.71
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.71
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.71
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.71
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.71
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.71
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.71
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.71
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.71
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.7
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.7
PTZ00284	467	protein kinase; Provisional	99.7
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.7
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.7
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.7
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.7
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.7
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.7
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.7
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.7
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.7
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.7
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.7
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.7
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.7
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.7
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.7
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.7
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.7
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.7
PLN03150	623	hypothetical protein; Provisional	99.7
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.69
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.69
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.69
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.69
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.69
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.69
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.69
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.69
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.69
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.69
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.69
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.69
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.69
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.69
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.68
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.68
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.68
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.68
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.68
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.68
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.68
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.68
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.68
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.68
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.68
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.68
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.68
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.68
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.68
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.68
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.68
KOG1152	772	consensus Signal transduction serine/threonine kin	99.68
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.68
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.68
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.68
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.68
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.68
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.68
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.68
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.67
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.67
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.67
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.67
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.67
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.67
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.67
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.67
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.67
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.67
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.67
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.67
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.67
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.67
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.67
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.67
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.67
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.67
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.67
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.67
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.67
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.67
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.67
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.67
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.67
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.66
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.66
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.66
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.66
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.66
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.66
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.66
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.66
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.66
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.66
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.66
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.66
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.66
KOG0586	596	consensus Serine/threonine protein kinase [General	99.66
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.66
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.66
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.66
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.66
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.66
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.66
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.66
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.66
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.65
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.65
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.65
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.65
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.65
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.65
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.65
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.65
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.65
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.65
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.65
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.65
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.65
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.65
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.65
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.65
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.65
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.65
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.65
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.65
PLN00009	294	cyclin-dependent kinase A; Provisional	99.65
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.65
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.65
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.65
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.65
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.65
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.64
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.64
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.64
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.64
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.64
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.64
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.64
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.64
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.64
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.64
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.64
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.64
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.63
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.63
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.63
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.63
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.63
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.63
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.63
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.63
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.63
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.63
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.63
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.63
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.63
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.63
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.63
PHA02882	294	putative serine/threonine kinase; Provisional	99.63
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.62
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.62
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.62
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.62
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.62
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.62
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.62
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.61
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.61
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.61
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.61
KOG0610	459	consensus Putative serine/threonine protein kinase	99.61
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.61
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.61
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.61
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.61
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.61
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.61
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.61
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.61
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.61
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.61
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.61
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.61
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.6
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.6
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.6
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.6
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.6
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.6
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.59
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.59
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.59
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.59
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.59
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.59
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.59
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.58
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.58
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.58
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.58
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.58
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.58
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.57
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.57
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.57
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.56
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.56
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.56
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.56
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.55
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.55
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.55
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.55
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.54
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.53
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.53
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.52
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.52
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.52
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.52
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.51
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.5
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.49
PLN03150	623	hypothetical protein; Provisional	99.47
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.47
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.46
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.43
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.41
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.4
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.37
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.37
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.35
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.35
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.35
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.34
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.34
PRK10345	210	hypothetical protein; Provisional	99.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.32
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.25
smart00090	237	RIO RIO-like kinase.	99.24
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.24
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.23
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.19
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.17
PRK14879	211	serine/threonine protein kinase; Provisional	99.16
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.16
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.14
PRK12274	218	serine/threonine protein kinase; Provisional	99.13
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.11
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.08
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.04
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.8
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
PLN00181	793	protein SPA1-RELATED; Provisional	98.75
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.75
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.55
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.55
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.47
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.44
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.36
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	98.28
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.28
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.23
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.09
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	98.07
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.06
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.9
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	97.85
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.82
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.63
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.58
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.58
KOG3087	229	consensus Serine/threonine protein kinase [General	97.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.52
PRK15386	426	type III secretion protein GogB; Provisional	97.46
PRK15386	426	type III secretion protein GogB; Provisional	97.4
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.1
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	97.1

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-96  Score=915.58  Aligned_cols=750  Identities=31%  Similarity=0.517  Sum_probs=545.8

Q ss_pred             CHHHHHHHHHHHhhcCCCCCCcCCCCCCCCCCCCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCC
Q 047196           53 ITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHN  132 (827)
Q Consensus        53 ~~~~~~aLl~~k~~~~~~~~~~l~~w~~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N  132 (827)
                      .+.|++||++||+++ .+|.+.+.+|. .+.|||.|.||+|+. .++|+.|||++++++|.++++|..+++|++|+|++|
T Consensus        27 ~~~~~~~l~~~~~~~-~~~~~~~~~w~-~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         27 HAEELELLLSFKSSI-NDPLKYLSNWN-SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             CHHHHHHHHHHHHhC-CCCcccCCCCC-CCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            568999999999998 57877788997 667999999999985 469999999999999999999999999999999999


Q ss_pred             CCCccCChhhh-hccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccC
Q 047196          133 KLSGDIPPSIF-TMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQI  211 (827)
Q Consensus       133 ~l~g~~p~~~~-~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~  211 (827)
                      +++|.+|..+. .+++|++|||++|+++|.+|.  ..+++|++|+|++|.+++.+|..+..+ ++|++|+|++|.+.+.+
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~  180 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKI  180 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC-CCCCEEECccCcccccC
Confidence            99999998876 889999999999988877664  346677777777777776667666553 36777777777776666


Q ss_pred             CccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCC
Q 047196          212 PLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMS  291 (827)
Q Consensus       212 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  291 (827)
                      |..++++++|++|++++|.+++.+|..++++++|++|+|++|++++.+|..++.+++|++|+|++|++++.+|..+.+++
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence            76667777777777777766666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCC---------ccC
Q 047196          292 TVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT---------IGL  362 (827)
Q Consensus       292 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~---------~~l  362 (827)
                      +|+.|++++|.+.+.+|..+. .+++|+.|++++|++.+.+|..+.++++|+.|++++|.+++.+|..         +.+
T Consensus       261 ~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             CCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence            666666666666666655544 5556666666666666555555555555555555555555544432         123


Q ss_pred             CCCCCcc------------------------cCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccc
Q 047196          363 TGNPLDG------------------------VLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG  418 (827)
Q Consensus       363 ~~n~l~g------------------------~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  418 (827)
                      ++|.+.+                        .+|..+.... +++.|++++|++.+.+|..+..+++|+.|++++|++++
T Consensus       340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            4444444                        4444444433 45555555555555556666666666667777777766


Q ss_pred             cccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccc
Q 047196          419 SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWN  498 (827)
Q Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  498 (827)
                      .+|..|..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .++|+.||+++|++++.+|..+.+
T Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhh
Confidence            6666677777777777777777777776666777777777777777777776553 477888899999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCCc---CCceEe
Q 047196          499 LKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELN  575 (827)
Q Consensus       499 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~  575 (827)
                      +++|+.|+|++|+++|.+|..++.+++|+.|++++|+++|.+|..++++++|+.|||++|+++|.+|..+.   .|+.||
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  577 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN  577 (968)
T ss_pred             hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999998765   689999


Q ss_pred             CcCCcCeecCCCCCCCCCCcccccccCccccCCC-CCCCcccccccccccccceeeeehhhHHHHHHHHH--HHHhhhhh
Q 047196          576 LSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLP-NLQFPKCKRRTRRKSKKKMLLLVIVLPLSTALIIA--VPLALKYK  652 (827)
Q Consensus       576 ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p-~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  652 (827)
                      +++|+++|.+|..++|.++.+.++.||+.+||.+ ....++|.....   .+.++ ++++++++++++++  +.++++++
T Consensus       578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  653 (968)
T PLN00113        578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRK---TPSWW-FYITCTLGAFLVLALVAFGFVFIR  653 (968)
T ss_pred             ccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccc---cceee-eehhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999843 334567753211   11122 22222222221111  11222222


Q ss_pred             cccCC--C-----Cccc----------cccchhHHHHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHH
Q 047196          653 SIRGG--K-----SKTL----------RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMA  714 (827)
Q Consensus       653 ~~~~~--~-----~~~~----------~~~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~  714 (827)
                      +++..  +     ...+          +.++++   ...+.|...++||+|+||.||+|+. .+|+.||||++.....  
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--  728 (968)
T PLN00113        654 GRNNLELKRVENEDGTWELQFFDSKVSKSITIN---DILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS--  728 (968)
T ss_pred             hhhcccccccccccccccccccccccchhhhHH---HHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc--
Confidence            22110  0     0001          112222   2335677889999999999999986 5789999999864322  


Q ss_pred             HHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCCC-------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 047196          715 LKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNC-------SLNIFDKLNIMIDVASALEYLHFSHSTPVIH  787 (827)
Q Consensus       715 ~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~~-------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiH  787 (827)
                        ...+|++++++++|||||+++|+|.+++..++.+.+...+       .++|.++.+|+.++|+|++|||+.++++|+|
T Consensus       729 --~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH  806 (968)
T PLN00113        729 --IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVV  806 (968)
T ss_pred             --ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeec
Confidence              1245789999999999999999998877655544443322       3688899999999999999999888999999


Q ss_pred             ccCCCccee---------eecccccccCCCccccccceecccccccccC
Q 047196          788 CDLKPKNVF---------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       788 rDlK~~NIl---------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ||+||+||+         +||.++...     ......||++|||||++
T Consensus       807 ~dlkp~Nil~~~~~~~~~~~~~~~~~~-----~~~~~~~t~~y~aPE~~  850 (968)
T PLN00113        807 GNLSPEKIIIDGKDEPHLRLSLPGLLC-----TDTKCFISSAYVAPETR  850 (968)
T ss_pred             CCCCHHhEEECCCCceEEEeccccccc-----cCCCccccccccCcccc
Confidence            999999998         223322211     11223578999999974

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-58  Score=573.76  Aligned_cols=484  Identities=34%  Similarity=0.556  Sum_probs=421.2

Q ss_pred             CCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccC-CCCCCcEEEcCCCCCCCCcchhHhhccccccEE
Q 047196          122 SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVL  200 (827)
Q Consensus       122 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~-~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L  200 (827)
                      .+++.|||++|+++|.+|..|..+++|++|||++|+++|.+|..+. .+++|++|+|++|+++|.+|..   .+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc---ccCCCCEE
Confidence            4789999999999999999999999999999999999999998766 9999999999999999999863   35699999


Q ss_pred             EeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCc
Q 047196          201 FLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLV  280 (827)
Q Consensus       201 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  280 (827)
                      +|++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|+|++|++++.+|..++.+++|++|+|++|+++
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCC-
Q 047196          281 GVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT-  359 (827)
Q Consensus       281 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-  359 (827)
                      +.+|..+.++++|+.|++++|.+.+.+|..+. .+++|+.|++++|++++.+|..+.++++|+.|++++|.+.+.+|.. 
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  304 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV  304 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence            99999999999999999999999999998876 8999999999999999999999999999999999999999988854 


Q ss_pred             --------ccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCc
Q 047196          360 --------IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQ  431 (827)
Q Consensus       360 --------~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  431 (827)
                              +.+++|.+.+.+|..+..++ +|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  383 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF  383 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence                    34788999999999988887 899999999999999999999999999999999998888887777777777


Q ss_pred             EEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccc-------------
Q 047196          432 GLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWN-------------  498 (827)
Q Consensus       432 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-------------  498 (827)
                      .|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.||+++|.+++.+|..+..             
T Consensus       384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  463 (968)
T PLN00113        384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK  463 (968)
T ss_pred             EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence            7777777777767766666666666666666666666666666666666666666655555543333             


Q ss_pred             ----------cccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCC
Q 047196          499 ----------LKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF  568 (827)
Q Consensus       499 ----------l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  568 (827)
                                .++|+.||+++|++++.+|..+.+++.|+.|++++|+++|.+|..++++++|+.|+|++|+++|.+|..+
T Consensus       464 ~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  543 (968)
T PLN00113        464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF  543 (968)
T ss_pred             eeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence                      3556777778888888888888899999999999999999999999999999999999999999999876


Q ss_pred             c---CCceEeCcCCcCeecCCCC-CCCCCCcccccccCccccCCCC
Q 047196          569 G---YLTELNLSFNKLEGEIPRG-GPFANFTAKSFMGNEKLCGLPN  610 (827)
Q Consensus       569 ~---~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~p~  610 (827)
                      +   +|+.||+++|+++|.+|.. ..+..+....+.+|+..+.+|.
T Consensus       544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            4   7899999999999999975 3455566677788876665553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-37  Score=329.98  Aligned_cols=367  Identities=23%  Similarity=0.268  Sum_probs=288.9

Q ss_pred             CCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEe
Q 047196          123 SLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFL  202 (827)
Q Consensus       123 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~L  202 (827)
                      .-+.||+|+|.++.+.+..|.++++|+.+++..|.++ .+|......++++.|+|.+|.++ ++..+-...++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            3467999999999888999999999999999999997 56776667777999999999988 455554455668999999


Q ss_pred             ecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCccc
Q 047196          203 AKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV  282 (827)
Q Consensus       203 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  282 (827)
                      |.|.++...-..|..-.++++|+|++|.|+..--..|.++.+|..|.|+.|+++...+..|.+|++|+.|+|..|+|.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            99999876666788888999999999999987788899999999999999999977777888899999999999998765


Q ss_pred             CchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccC
Q 047196          283 VPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGL  362 (827)
Q Consensus       283 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l  362 (827)
                      --..|.++.+|+.|.+..|.+.. +..+.+..+.++++|+|+.|+++..-..++.++++|+.|++|+|.+..+-++    
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~k-L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d----  311 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISK-LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID----  311 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCccc-ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc----
Confidence            55667788888888888887753 4445555778888888888888877777888888888888888887654433    


Q ss_pred             CCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCC
Q 047196          363 TGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAG  442 (827)
Q Consensus       363 ~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  442 (827)
                                 .|.-. ..|++|+|++|+++...+..|..+..|+.|.|++|+++..-...|..+++|+.|||++|.+++
T Consensus       312 -----------~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~  379 (873)
T KOG4194|consen  312 -----------SWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW  379 (873)
T ss_pred             -----------hhhhc-ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence                       22222 268888888888887777778888888888888888876666677778888888888888876


Q ss_pred             CCCc---cccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCC
Q 047196          443 SIPD---QLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSS  509 (827)
Q Consensus       443 ~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  509 (827)
                      .|-+   .|.+++.|+.|++.+|++....-..|.++..|++|||.+|.|..+-|.+|..+ .|+.|-+..
T Consensus       380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            6644   36667778888888888875444567777888888888888877777777776 666665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-40  Score=337.79  Aligned_cols=442  Identities=27%  Similarity=0.417  Sum_probs=264.1

Q ss_pred             EEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCC
Q 047196          100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDS  179 (827)
Q Consensus       100 v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~  179 (827)
                      ++.|+++.|++. .+|++++.+..+..|+.|+|+++ .+|++++++.+|+.||.++|.+. .+|+.++.+..+..++..+
T Consensus        70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN  146 (565)
T ss_pred             eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence            444555555554 34555555555555555555554 55555555555555555555554 3444555555555566556


Q ss_pred             CCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccc
Q 047196          180 DKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEI  259 (827)
Q Consensus       180 n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  259 (827)
                      |+++ ++|.+++.+. +|..|++.+|++....|..+. +++|++||...|-++ .+|..++.|.+|.-|+|+.|++. .+
T Consensus       147 N~i~-slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  147 NQIS-SLPEDMVNLS-KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             cccc-cCchHHHHHH-HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence            6555 4555555544 556666666666543333333 666666666666554 55666666666666666666665 45


Q ss_pred             cccccCcCCCcEEEeecccCcccCchhhh-cCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccC
Q 047196          260 PHEIGYLPNLENLVLGFNNLVGVVPAAIF-NMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN  338 (827)
Q Consensus       260 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (827)
                      | +|..+..|++|+++.|++. .+|+... ++.++..||+.+|++. ++|.++. .+.+|++||+++|.+++ .|..+++
T Consensus       222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is~-Lp~sLgn  296 (565)
T KOG0472|consen  222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDISS-LPYSLGN  296 (565)
T ss_pred             C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCcccc-CCccccc
Confidence            5 6666666666666666665 3444433 6666777777776664 4555554 56667777777777764 4556666


Q ss_pred             CCCCcEEEcCCCcceeecCCCc------------------cCCCC----CCcccCCCchh---cccccccEEEccCCcCc
Q 047196          339 ASKLVYLDMGTNSFSGIIPNTI------------------GLTGN----PLDGVLPTSIG---NLSMSLENIYISNCNIG  393 (827)
Q Consensus       339 l~~L~~L~Ls~N~l~g~~p~~~------------------~l~~n----~l~g~~p~~~~---~~~~~L~~L~Ls~N~l~  393 (827)
                      + .|+.|.+-+|.+..+-.+.+                  +++.-    --.+..|.+.+   ....+.+.|+++.-+++
T Consensus       297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence            6 66667666666532111000                  01100    00011111110   01124667777777776


Q ss_pred             cccCccccCCC---CCceEeccCccccccccccccCCCCCcE-EECCCCCCCCCCCccccccccccEEecCCCcccccCC
Q 047196          394 GSIPQLISNLS---NLLLLDLEGNKLTGSIPVTFGRLQKLQG-LYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIP  469 (827)
Q Consensus       394 g~~p~~~~~l~---~L~~L~Ls~N~l~g~~p~~~~~l~~L~~-L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p  469 (827)
                       .+|+....-.   -.+..+++.|++. .+|..+..+..++. +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|
T Consensus       376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLP  451 (565)
T ss_pred             -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcc
Confidence             3444332222   2667777777776 46665555555443 34444444 467777777777777777777776 677


Q ss_pred             ccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCC
Q 047196          470 SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKD  549 (827)
Q Consensus       470 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  549 (827)
                      ..++.+..|+.||+|.|+|. .+|..+..+..++.+-.++|++....|..+.++..|..|||.+|.+. .||+.+++|++
T Consensus       452 ~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn  529 (565)
T KOG0472|consen  452 EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN  529 (565)
T ss_pred             hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence            77777777777777777776 36777777777777777777776655555777777777777777777 67777777777


Q ss_pred             CCEEECCCCcce
Q 047196          550 LQNISLACNGLE  561 (827)
Q Consensus       550 L~~L~Ls~N~l~  561 (827)
                      |++|++++|.|.
T Consensus       530 L~hLeL~gNpfr  541 (565)
T KOG0472|consen  530 LRHLELDGNPFR  541 (565)
T ss_pred             eeEEEecCCccC
Confidence            777777777776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.7e-41  Score=339.01  Aligned_cols=465  Identities=27%  Similarity=0.345  Sum_probs=372.8

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      .++.+++++|.+. .+.+.+.+|..|.+|++++|++. ..|++++.+..++.|+.|+|+++ .+|.++..+.+++.++.+
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            4677899999987 45567899999999999999998 89999999999999999999997 688999999999999999


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE  258 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (827)
                      +|.+. ++|++++.++ .|+.|+..+|+++ ..|+.+.++.+|..+++.+|++....|..+. |+.|++||...|-+. .
T Consensus       123 ~n~~~-el~~~i~~~~-~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLL-DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             cccee-ecCchHHHHh-hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence            99998 7999999987 8999999999997 6788999999999999999999976666665 999999999999886 8


Q ss_pred             ccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccC
Q 047196          259 IPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN  338 (827)
Q Consensus       259 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (827)
                      +|+.++.+.+|+.|+|..|.+.. +| .|..++.|.++++..|++. .+|.+....++++..|||..|++. ..|+.+.-
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl  273 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL  273 (565)
T ss_pred             CChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence            99999999999999999999974 55 7999999999999988874 678888888999999999999998 68999999


Q ss_pred             CCCCcEEEcCCCcceeecCCC-------ccCCCCCCcccCCCchhcccc--cccEEE-------ccCCc---C-ccccC-
Q 047196          339 ASKLVYLDMGTNSFSGIIPNT-------IGLTGNPLDGVLPTSIGNLSM--SLENIY-------ISNCN---I-GGSIP-  397 (827)
Q Consensus       339 l~~L~~L~Ls~N~l~g~~p~~-------~~l~~n~l~g~~p~~~~~~~~--~L~~L~-------Ls~N~---l-~g~~p-  397 (827)
                      +.+|++||+|+|.+++..+..       +.+.||++...- ..+-+...  -|++|.       ++.-.   - .+..| 
T Consensus       274 LrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiR-r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~  352 (565)
T KOG0472|consen  274 LRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIR-REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS  352 (565)
T ss_pred             hhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHH-HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence            999999999999998755431       224455543110 00000000  011110       00000   0 00111 


Q ss_pred             ---ccccCCCCCceEeccCccccccccccccCCC---CCcEEECCCCCCCCCCCccccccccccE-EecCCCcccccCCc
Q 047196          398 ---QLISNLSNLLLLDLEGNKLTGSIPVTFGRLQ---KLQGLYLPFNKLAGSIPDQLCHLARLNT-LGLAGNKFSGSIPS  470 (827)
Q Consensus       398 ---~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~---~L~~L~Ls~N~l~g~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~  470 (827)
                         .....+.+.+.|+++.-+++ .+|+....-.   -....+++.|++. ++|..+..++.+.+ +.+++|.+ +-+|.
T Consensus       353 ~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~  429 (565)
T KOG0472|consen  353 ESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPL  429 (565)
T ss_pred             Ccccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchH
Confidence               12234567888999999988 4555433322   3778999999998 78988888877765 44555555 57888


Q ss_pred             cccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCC
Q 047196          471 CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDL  550 (827)
Q Consensus       471 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L  550 (827)
                      .+..+++|..|+|++|.+.. +|..++.+..|+.||+|.|+|. .+|..+..+..++.+-.++|++...-|+.+.+|.+|
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             HHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            99999999999999998874 7889999999999999999886 578888888888888888899986666669999999


Q ss_pred             CEEECCCCcceeecCCCC---cCCceEeCcCCcCe
Q 047196          551 QNISLACNGLEGLIPESF---GYLTELNLSFNKLE  582 (827)
Q Consensus       551 ~~L~Ls~N~l~g~ip~~~---~~L~~L~ls~N~l~  582 (827)
                      ..|||.+|.+... |..+   .+|++|++++|.|.
T Consensus       508 ~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 TTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence            9999999999754 5444   47889999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-37  Score=327.25  Aligned_cols=357  Identities=23%  Similarity=0.259  Sum_probs=304.7

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      .-++||+++|.++..-+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.|+..-.+++..++.|+.||||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4567888888888877888888999999999999887 677766666679999999999887777888889999999999


Q ss_pred             cccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceee
Q 047196          276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       276 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  355 (827)
                      .|.|+.+--.+|..-.++++|++++|.++. +..+-+..+.+|..|.|+.|+++...+..|.++++|+.|+|..|.+.-.
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            999887766777777889999999998864 3333344788899999999999988788888899999999999987521


Q ss_pred             cCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEEC
Q 047196          356 IPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL  435 (827)
Q Consensus       356 ~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  435 (827)
                      -    ++           .+..+. +|+.|.|..|+++..-...|..+.++++|+|+.|+++..-..++-++++|+.|+|
T Consensus       237 e----~l-----------tFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l  300 (873)
T KOG4194|consen  237 E----GL-----------TFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL  300 (873)
T ss_pred             h----hh-----------hhcCch-hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence            0    01           223333 7999999999999888889999999999999999999888888899999999999


Q ss_pred             CCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCC
Q 047196          436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGP  515 (827)
Q Consensus       436 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  515 (827)
                      |+|.+...-++.+...+.|++|+|++|+++..-+..|..+..|+.|.|++|.+...-...|..+++|+.|||++|.+++.
T Consensus       301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~  380 (873)
T KOG4194|consen  301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC  380 (873)
T ss_pred             chhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence            99999988899999999999999999999988888899999999999999999988888999999999999999999887


Q ss_pred             Cc---ccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCCcC
Q 047196          516 LS---LDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY  570 (827)
Q Consensus       516 ~p---~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  570 (827)
                      |.   ..|.+|+.|+.|+|.+|+|....-..|..+.+|+.|||.+|-+...-|.+|..
T Consensus       381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence            64   35677999999999999999766678999999999999999999999988874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-36  Score=331.42  Aligned_cols=438  Identities=27%  Similarity=0.361  Sum_probs=344.5

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      +++.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|+|.+|.+. ..|..+..+.+|++|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            4889999998875 67888999999999999999998 77899999999999999999887 678899999999999999


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE  258 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (827)
                      +|.|. .+|.-+..+. .++.++.++|.-...    ++... .+.+++..|.+.+.++..+..++.  .|||++|++.  
T Consensus       123 ~N~f~-~~Pl~i~~lt-~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--  191 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEVLT-AEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--  191 (1081)
T ss_pred             hhccC-CCchhHHhhh-HHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--
Confidence            99997 6887776654 788888888832222    22222 888999999999999988888877  7999999986  


Q ss_pred             ccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccC
Q 047196          259 IPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN  338 (827)
Q Consensus       259 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (827)
                       -..+..+.+|+.|....|+++...    -...+++.|+.++|.+....+..   .-.+|+++++++|++++ +|+|++.
T Consensus       192 -~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~-lp~wi~~  262 (1081)
T KOG0618|consen  192 -VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSN-LPEWIGA  262 (1081)
T ss_pred             -hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecccc---ccccceeeecchhhhhc-chHHHHh
Confidence             245677889999999999886432    23468899999999987433322   23579999999999995 5699999


Q ss_pred             CCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccc
Q 047196          339 ASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG  418 (827)
Q Consensus       339 l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  418 (827)
                      +.+|+.++..+|+++                .+|..+.... +|+.|.+.+|.+. -+|.....+++|++|||..|+|..
T Consensus       263 ~~nle~l~~n~N~l~----------------~lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  263 CANLEALNANHNRLV----------------ALPLRISRIT-SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             cccceEecccchhHH----------------hhHHHHhhhh-hHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccc
Confidence            999999999999985                3444454444 7888888888887 567777788889999999888875


Q ss_pred             cccccccCCCC-CcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCcccc
Q 047196          419 SIPVTFGRLQK-LQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFW  497 (827)
Q Consensus       419 ~~p~~~~~l~~-L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  497 (827)
                      .++..+.-+.. |..|+.+.|++....--.=..++.|+.|.+.+|+++...-+.+.+.+.|+.|+|++|++.......+.
T Consensus       325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~  404 (1081)
T KOG0618|consen  325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR  404 (1081)
T ss_pred             cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence            54444444443 77777777877633222223467788888888888877777788888888888888888766556677


Q ss_pred             ccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCccee-ecCCCC--cCCceE
Q 047196          498 NLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEG-LIPESF--GYLTEL  574 (827)
Q Consensus       498 ~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g-~ip~~~--~~L~~L  574 (827)
                      ++..|+.|+||+|+++ .+|..+.++..|+.|..-+|++. ..| ++..++.|+.+|+|+|+|+. .+|...  .+|++|
T Consensus       405 kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyL  481 (1081)
T KOG0618|consen  405 KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYL  481 (1081)
T ss_pred             chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccccee
Confidence            8888888888888887 47788888888888888888887 566 78888888888888888864 445444  378888


Q ss_pred             eCcCCc
Q 047196          575 NLSFNK  580 (827)
Q Consensus       575 ~ls~N~  580 (827)
                      |+|+|.
T Consensus       482 dlSGN~  487 (1081)
T KOG0618|consen  482 DLSGNT  487 (1081)
T ss_pred             eccCCc
Confidence            888885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=1.7e-35  Score=314.50  Aligned_cols=365  Identities=24%  Similarity=0.385  Sum_probs=311.5

Q ss_pred             CcEEEEEcCCCCCc-cccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEE
Q 047196           98 HRVTALNISSLNLQ-GTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIR  176 (827)
Q Consensus        98 ~~v~~L~L~~~~l~-g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~  176 (827)
                      .-|+..|+++|.++ +.+|.+...++.++.|.|...++. .+|++++.+.+|++|.+++|++. .+-..+..|+.|+.++
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            46899999999999 578999999999999999999987 89999999999999999999987 3445677888999999


Q ss_pred             cCCCCCC-CCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccc
Q 047196          177 LDSDKLS-GELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKL  255 (827)
Q Consensus       177 L~~n~l~-g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  255 (827)
                      +..|++. .-||.+++.+- .|++||||+|++. ..|..+..-+++-+|+||+|+|..+.-.-|.+++.|-+||||+|++
T Consensus        85 ~R~N~LKnsGiP~diF~l~-dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLK-DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhccccccCCCCchhcccc-cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            9999884 35999999855 8999999999997 7899999999999999999999854444577999999999999999


Q ss_pred             cccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccc-cccChhhhcCCCCccEEeCcCCccccccCc
Q 047196          256 RGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLL-GSFSLGIDLSLPNVERLNLGLNRFSGTIPS  334 (827)
Q Consensus       256 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  334 (827)
                      . .+|+.+..|.+|++|+|++|.+.-.--..+..|++|++|.+++.+-+ ..+|..+. .+.+|..+|++.|.+. .+|+
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccccccCCC-cchH
Confidence            8 78899999999999999999875433334456778888888876554 56777776 7889999999999997 6899


Q ss_pred             cccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCc
Q 047196          335 FITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGN  414 (827)
Q Consensus       335 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  414 (827)
                      .+-++.+|+.|+||+|+++..                ....+.+. +|+.|++|.|+++ .+|+.++.++.|+.|.+.+|
T Consensus       240 cly~l~~LrrLNLS~N~iteL----------------~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITEL----------------NMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNN  301 (1255)
T ss_pred             HHhhhhhhheeccCcCceeee----------------eccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccC
Confidence            999999999999999998742                12233333 7899999999998 78999999999999999999


Q ss_pred             cccc-cccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCccc
Q 047196          415 KLTG-SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLT  489 (827)
Q Consensus       415 ~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  489 (827)
                      +++- -+|..++++.+|+++..++|++. .+|+.++.+..|+.|.|+.|++- .+|..+.-++.|+.||+..|.=-
T Consensus       302 kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  302 KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            8752 37888999999999999999887 78999999999999999999987 78988888999999999888644

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.1e-33  Score=300.62  Aligned_cols=367  Identities=26%  Similarity=0.384  Sum_probs=269.2

Q ss_pred             CCCCCCEEECCCCCCCc-cCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhcccccc
Q 047196          120 NLSSLTTLNLSHNKLSG-DIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLK  198 (827)
Q Consensus       120 ~L~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~  198 (827)
                      -|+..+-.|+|+|.|+| ..|.....|++++.|.|...++.                         .+|.++..+- +|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-------------------------~vPeEL~~lq-kLE   58 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-------------------------QVPEELSRLQ-KLE   58 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-------------------------hChHHHHHHh-hhh
Confidence            35566778889999884 68888888888888888887776                         5777777644 788


Q ss_pred             EEEeecccccccCCccCCCCCCCcEEEccCCCCc-ccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecc
Q 047196          199 VLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLS-GAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN  277 (827)
Q Consensus       199 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  277 (827)
                      +|.+++|++. .+-..++.++.|+.+.+..|++. .-+|..+..|..|+.||||+|++. +.|..+.+-+++-+|+||+|
T Consensus        59 HLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N  136 (1255)
T KOG0444|consen   59 HLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYN  136 (1255)
T ss_pred             hhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccC
Confidence            8888888876 45567778888888888888874 346777888888888888888887 78888888888888888888


Q ss_pred             cCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecC
Q 047196          278 NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIP  357 (827)
Q Consensus       278 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  357 (827)
                      +|..+.-.-+-+++.|-.|++++|.+. .+|..+. .+.+|+.|+|++|.+.----..+..+++|+.|.+++.+=+    
T Consensus       137 ~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT----  210 (1255)
T KOG0444|consen  137 NIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT----  210 (1255)
T ss_pred             ccccCCchHHHhhHhHhhhccccchhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch----
Confidence            887544445567777777777777764 4555554 5667777777777654322233445666667776665432    


Q ss_pred             CCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCC
Q 047196          358 NTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPF  437 (827)
Q Consensus       358 ~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  437 (827)
                                ...+|+++..+. +|..+|+|.|++. .+|..+-++.+|+.|+||+|+|+. +....+...+|+.|+||.
T Consensus       211 ----------l~N~Ptsld~l~-NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSr  277 (1255)
T KOG0444|consen  211 ----------LDNIPTSLDDLH-NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSR  277 (1255)
T ss_pred             ----------hhcCCCchhhhh-hhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhcccc
Confidence                      124666776666 7788888888886 677777788888888888888773 444555667778888888


Q ss_pred             CCCCCCCCccccccccccEEecCCCcccc-cCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCC
Q 047196          438 NKLAGSIPDQLCHLARLNTLGLAGNKFSG-SIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPL  516 (827)
Q Consensus       438 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  516 (827)
                      |+++ .+|+.++.++.|+.|.+.+|+++- -||+.++.+.+|+++..++|.+. ..|..+..|..|+.|.|+.|.+- .+
T Consensus       278 NQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TL  354 (1255)
T KOG0444|consen  278 NQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TL  354 (1255)
T ss_pred             chhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ec
Confidence            8887 678888888888888888887762 36777787888888777777775 56777777777777777777775 46


Q ss_pred             cccccccccCceEEccccee
Q 047196          517 SLDIGNLRVVIGINLSRNNF  536 (827)
Q Consensus       517 p~~~~~l~~L~~L~Ls~N~l  536 (827)
                      |..+.-++.|..||+..|.=
T Consensus       355 PeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  355 PEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhhhhhcCCcceeeccCCcC
Confidence            77777777777777777753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=8.2e-34  Score=316.17  Aligned_cols=461  Identities=28%  Similarity=0.379  Sum_probs=334.5

Q ss_pred             EEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCC
Q 047196          100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDS  179 (827)
Q Consensus       100 v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~  179 (827)
                      ++.|+++.|-+-...-+...+--.|+.||||+|.+. ..|..+..+..|+.|+++.|.+. ..|....++++|+++.|..
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence            666777776554322223333334788888888776 77777888888888888888776 4456777777777777777


Q ss_pred             CCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccc
Q 047196          180 DKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEI  259 (827)
Q Consensus       180 n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  259 (827)
                      |.+. .+|.++.. +.+|++|+++.|+|. .+|..+..++.+..+..++|....    .++.+. .+.++|..|.+.+.+
T Consensus       101 n~l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen  101 NRLQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSF  172 (1081)
T ss_pred             chhh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccch
Confidence            7776 57776655 337777777777774 677777777777777777772221    122222 677777777777777


Q ss_pred             cccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCC
Q 047196          260 PHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA  339 (827)
Q Consensus       260 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  339 (827)
                      +.++..++.  .|||.+|.+.   -..+.++.+|+.+....|.+..-     ....++++.|+.+.|.++...+..  --
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~~~~~~p--~p  240 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLTTLDVHP--VP  240 (1081)
T ss_pred             hcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-----EecCcchheeeeccCcceeecccc--cc
Confidence            777777766  6888888776   23456677777777777766421     224567778888888776333222  23


Q ss_pred             CCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcccccc
Q 047196          340 SKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGS  419 (827)
Q Consensus       340 ~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~  419 (827)
                      .+|+++|++.|++++                +|++++.+. +|+.++..+|+++ .+|..+...++|+.|+..+|.++ -
T Consensus       241 ~nl~~~dis~n~l~~----------------lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-y  301 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN----------------LPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-Y  301 (1081)
T ss_pred             ccceeeecchhhhhc----------------chHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence            567788888887763                566777776 8888888888885 67788888888888888888887 5


Q ss_pred             ccccccCCCCCcEEECCCCCCCCCCCccc-cccc-cccEEecCCCcccccCCc-cccCCCCCCccccCCCcccccCCccc
Q 047196          420 IPVTFGRLQKLQGLYLPFNKLAGSIPDQL-CHLA-RLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTF  496 (827)
Q Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~  496 (827)
                      +|+....++.|+.|+|..|+|. ..|+.+ .-.. +|+.|+.+.|++. ..|. .=..++.|+.|++.+|.++...-+.+
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhh
Confidence            6677777888888888888887 445433 3232 3677778888876 3342 12245678999999999988776678


Q ss_pred             cccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCC--CCcCCceE
Q 047196          497 WNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPE--SFGYLTEL  574 (827)
Q Consensus       497 ~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~--~~~~L~~L  574 (827)
                      -+.++|+.|+|++|++.......+.++..|+.|+||+|.++ .+|.++.++..|+.|....|++... |+  .+.+|+.+
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~~~l~qL~~l  457 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-PELAQLPQLKVL  457 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-hhhhhcCcceEE
Confidence            88999999999999998666677889999999999999999 7899999999999999999999754 43  23589999


Q ss_pred             eCcCCcCee-cCCCCCCCCCCcccccccCccc
Q 047196          575 NLSFNKLEG-EIPRGGPFANFTAKSFMGNEKL  605 (827)
Q Consensus       575 ~ls~N~l~g-~ip~~~~~~~~~~~~~~~n~~l  605 (827)
                      |+|.|+|+- .+|..-+..++....+.||..+
T Consensus       458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             ecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            999999974 3454434467777888999853

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-31  Score=286.17  Aligned_cols=165  Identities=39%  Similarity=0.629  Sum_probs=140.5

Q ss_pred             cccccchhHHHHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeee
Q 047196          661 TLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC  740 (827)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~  740 (827)
                      ..+.|++.++..||++|+..++||+|+||.||+|.+++|+.||||++.....+..++|.+|++++++++|||+|+++|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            45679999999999999999999999999999999999999999988765432145699999999999999999999999


Q ss_pred             ecCCc-eeeeeeccC-----------CC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------e
Q 047196          741 SNEDF-KALDCLHST-----------NC-SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------D  797 (827)
Q Consensus       741 ~~~~~-~~l~~l~~~-----------~~-~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------D  797 (827)
                      .+.+. ..+.+.+..           .. .++|.+|++||.++|+||+|||+.+.++||||||||+|||          |
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsD  220 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSD  220 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccC
Confidence            98874 666544432           23 6799999999999999999999999999999999999999          9


Q ss_pred             ecccccccC-CCccccccc-eecccccccccC
Q 047196          798 FGIGRLLTG-DRSMIQTET-LVTIGYMAPGLL  827 (827)
Q Consensus       798 FGla~~~~~-~~~~~~~~~-~gt~~Y~APE~l  827 (827)
                      ||+|+.... ....  ... .||.||+||||+
T Consensus       221 FGLa~~~~~~~~~~--~~~~~gt~gY~~PEy~  250 (361)
T KOG1187|consen  221 FGLAKLGPEGDTSV--STTVMGTFGYLAPEYA  250 (361)
T ss_pred             ccCcccCCccccce--eeecCCCCccCChhhh
Confidence            999977654 2221  112 699999999984

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.93  E-value=2.9e-26  Score=236.05  Aligned_cols=149  Identities=32%  Similarity=0.498  Sum_probs=122.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ..+|...+.||+|+||+||+|+.+ ++.+||||.+...  .++..+....|+.+|+.++|||||++++++..+++.++..
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            457888888999999999999864 6899999999765  4556677899999999999999999999999998776644


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------------eecccccc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------------DFGIGRLL  804 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------------DFGla~~~  804 (827)
                      .+-..          +.+........+.|+|.|+++|   |+++||||||||.|||                |||+||.+
T Consensus        89 EyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L---~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L  165 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFL---HENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFL  165 (429)
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH---HHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhC
Confidence            44332          2455566677999999999999   5778999999999998                99999988


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..... . .+.+|++.||||||+
T Consensus       166 ~~~~~-a-~tlcGSplYMAPEV~  186 (429)
T KOG0595|consen  166 QPGSM-A-ETLCGSPLYMAPEVI  186 (429)
T ss_pred             CchhH-H-HHhhCCccccCHHHH
Confidence            74432 2 335699999999984

>PLN03210 Resistant to P

Probab=99.92  E-value=4e-24  Score=266.78  Aligned_cols=324  Identities=21%  Similarity=0.298  Sum_probs=173.6

Q ss_pred             CcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccccccc
Q 047196          185 ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIG  264 (827)
Q Consensus       185 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  264 (827)
                      .+|..+.....+|+.|++.+|.+. .+|..| ...+|+.|++.+|++. .+|..+..+++|+.|+|++++..+.+| .++
T Consensus       579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls  654 (1153)
T PLN03210        579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLS  654 (1153)
T ss_pred             ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccc
Confidence            345555544556777777776664 456555 4567777777777765 456666777777777777765445565 366


Q ss_pred             CcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcE
Q 047196          265 YLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVY  344 (827)
Q Consensus       265 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  344 (827)
                      .+++|++|+|++|.....+|..+.++++|+.|++++|...+.+|..+  .+++|+.|++++|...+.+|..   ..+|+.
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~  729 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISW  729 (1153)
T ss_pred             cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence            67777777777776666677777777777777777666555555543  4566666666666544444432   234555


Q ss_pred             EEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccc
Q 047196          345 LDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTF  424 (827)
Q Consensus       345 L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~  424 (827)
                      |++++|.+.. +|.               .+ .+. +|++|++.++.... ++                +.+....|..+
T Consensus       730 L~L~~n~i~~-lP~---------------~~-~l~-~L~~L~l~~~~~~~-l~----------------~~~~~l~~~~~  774 (1153)
T PLN03210        730 LDLDETAIEE-FPS---------------NL-RLE-NLDELILCEMKSEK-LW----------------ERVQPLTPLMT  774 (1153)
T ss_pred             eecCCCcccc-ccc---------------cc-ccc-ccccccccccchhh-cc----------------ccccccchhhh
Confidence            5555555431 121               11 111 34444444322110 00                00111111112


Q ss_pred             cCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccc
Q 047196          425 GRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILF  504 (827)
Q Consensus       425 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  504 (827)
                      ...++|+.|+|++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..   ..+|+.
T Consensus       775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~  850 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISD  850 (1153)
T ss_pred             hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCE
Confidence            223445555555555444555555555555555555544333444443 4555555555554443333332   234555


Q ss_pred             cCCCCCCCCCCCcccccccccCceEEccc-ceeeecccccccCCCCCCEEECCCC
Q 047196          505 FDLSSNSLDGPLSLDIGNLRVVIGINLSR-NNFSGDIPSTIGDLKDLQNISLACN  558 (827)
Q Consensus       505 LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~l~~L~~L~Ls~N  558 (827)
                      |+|++|.++ .+|.++..+++|+.|++++ |++. .+|..+..++.|+.|+++++
T Consensus       851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence            555555554 3455555566666666655 3333 35555556666666666655

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=1.1e-23  Score=262.96  Aligned_cols=364  Identities=20%  Similarity=0.249  Sum_probs=248.7

Q ss_pred             CcEEEEEcCCCCCcc--ccCccccCCCCCCEEECCCCC------CCccCChhhhhcc-ccceEEecCCCCCCccccccCC
Q 047196           98 HRVTALNISSLNLQG--TIPPQLGNLSSLTTLNLSHNK------LSGDIPPSIFTMH-KLKFLDFSDNQLSGSLSSVTFN  168 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g--~~~~~l~~L~~L~~L~Ls~N~------l~g~~p~~~~~l~-~L~~LdLs~N~l~g~~p~~~~~  168 (827)
                      .+|..+.+.-..+..  .-+.+|.++++|+.|.+.++.      +...+|..|..++ +|+.|++.+|.+.         
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~---------  602 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR---------  602 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC---------
Confidence            456655554333321  123456777777777775543      2334566565543 4666666666554         


Q ss_pred             CCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEE
Q 047196          169 LSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKI  248 (827)
Q Consensus       169 l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  248 (827)
                                      .+|..+.  ..+|+.|+|.+|.+. .+|..+..+++|+.|+|+++...+.+|. ++.+++|+.|
T Consensus       603 ----------------~lP~~f~--~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L  662 (1153)
T PLN03210        603 ----------------CMPSNFR--PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL  662 (1153)
T ss_pred             ----------------CCCCcCC--ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence                            3444431  246777777777765 4566677788888888887665556664 7778888888


Q ss_pred             EcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCcc
Q 047196          249 SLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRF  328 (827)
Q Consensus       249 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l  328 (827)
                      +|++|.....+|..++++++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.    ..++|+.|++++|.+
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i  737 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAI  737 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcc
Confidence            888877666788888888888888888876656677655 678888888888877666663    346788999999988


Q ss_pred             ccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCce
Q 047196          329 SGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLL  408 (827)
Q Consensus       329 ~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  408 (827)
                      . .+|..+ .+++|+.|++.++..... ...       +. .++........+|+.|++++|...+.+|..++++++|+.
T Consensus       738 ~-~lP~~~-~l~~L~~L~l~~~~~~~l-~~~-------~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~  806 (1153)
T PLN03210        738 E-EFPSNL-RLENLDELILCEMKSEKL-WER-------VQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH  806 (1153)
T ss_pred             c-cccccc-cccccccccccccchhhc-ccc-------cc-ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence            6 466654 577888888876442211 000       00 011111122337889999998888888988999999999


Q ss_pred             EeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcc
Q 047196          409 LDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRL  488 (827)
Q Consensus       409 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  488 (827)
                      |++++|...+.+|..+ ++++|+.|++++|.....+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|++++|+-
T Consensus       807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence            9998876555677665 6888999999887665566653   357888888888887 6788888888888888887443


Q ss_pred             cccCCccccccccccccCCCCCC
Q 047196          489 TSVLPSTFWNLKDILFFDLSSNS  511 (827)
Q Consensus       489 ~~~~p~~~~~l~~L~~LdLs~N~  511 (827)
                      -..+|..+..+++|+.+++++|.
T Consensus       882 L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        882 LQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCccCcccccccCCCeeecCCCc
Confidence            33466677778888888887764

syringae 6; Provisional

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.91  E-value=2.1e-25  Score=220.16  Aligned_cols=149  Identities=30%  Similarity=0.377  Sum_probs=117.4

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +.|+...++|+|+||+||||+.+ +|+.||||++...  .+...+-..|||++|++++|+|+|.+++.|.......+.+.
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            45778889999999999999965 5999999999643  34445667899999999999999999988876654444333


Q ss_pred             ccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.+.          ..........+..|+++|+.|+   |++++|||||||+|||          |||+||.+...+. .
T Consensus        82 ~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~c---Hk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd-~  157 (396)
T KOG0593|consen   82 YCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFC---HKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGD-N  157 (396)
T ss_pred             ecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhh---hhcCeecccCChhheEEecCCcEEeccchhhHhhcCCcc-h
Confidence            3222          2234444567889999999888   6788999999999999          9999999875433 3


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .|..+.|.+|+|||.+
T Consensus       158 YTDYVATRWYRaPELL  173 (396)
T KOG0593|consen  158 YTDYVATRWYRAPELL  173 (396)
T ss_pred             hhhhhhhhhccChhhh
Confidence            4667899999999974

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.7e-24  Score=222.59  Aligned_cols=148  Identities=25%  Similarity=0.354  Sum_probs=116.8

Q ss_pred             hcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchH-------HHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM-------ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~-------~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      +.|-..+.+|+|+||.|-+|. .++|+.||||++.+....       ......+|+++|+++.|||||++.+++..++..
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS  251 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence            346667899999999999996 568999999999753211       122357999999999999999999999998877


Q ss_pred             eeeeeccCCCC----------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eeccccc
Q 047196          747 ALDCLHSTNCS----------LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRL  803 (827)
Q Consensus       747 ~l~~l~~~~~~----------l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~  803 (827)
                      +|...+.+++.          +....-..++.|+..|+.||   |+++|+||||||+|||             |||+||.
T Consensus       252 YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYL---H~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~  328 (475)
T KOG0615|consen  252 YMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYL---HSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKV  328 (475)
T ss_pred             EEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHH---HHcCcccccCCcceEEeccCCcceEEEecccchhhc
Confidence            66555544332          33334456899999999999   5889999999999998             9999998


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....-  ..+.||||.|+||||+
T Consensus       329 ~g~~sf--m~TlCGTpsYvAPEVl  350 (475)
T KOG0615|consen  329 SGEGSF--MKTLCGTPSYVAPEVL  350 (475)
T ss_pred             ccccee--hhhhcCCccccChhhe
Confidence            763322  2346799999999986

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.8e-24  Score=233.62  Aligned_cols=149  Identities=26%  Similarity=0.387  Sum_probs=125.9

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD-  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~-  749 (827)
                      ..|...++||+|+|+.||+++. .+|+.||+|++++.   ...+.+...+||++.+.++|||||++++++.+.+..++. 
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            5699999999999999999996 78999999999763   244567889999999999999999999999998876653 


Q ss_pred             -eecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          750 -CLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       750 -~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                       ..+.        ....++..+...+..||+.|+.||   |+.+|||||||.+|++          |||+|..+..+...
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYL---H~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Er  174 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYL---HSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGER  174 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH---HhcCceecccchhheeecCcCcEEecccceeeeecCcccc
Confidence             2222        235677888889999999999999   5778999999999998          99999998766554


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      . .+.||||-|+||||+
T Consensus       175 k-~TlCGTPNYIAPEVl  190 (592)
T KOG0575|consen  175 K-KTLCGTPNYIAPEVL  190 (592)
T ss_pred             c-ceecCCCcccChhHh
Confidence            3 346799999999985

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.3e-24  Score=227.01  Aligned_cols=150  Identities=29%  Similarity=0.379  Sum_probs=123.8

Q ss_pred             hcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Cceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~~l~  749 (827)
                      +.|+..++||+|.||.||||+ ..+|+.||+|+++.+.  ........|||.||++++|||||++.+...+.  ...+|.
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            457778899999999999998 4689999999997654  33455678999999999999999999998776  344444


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      +.|+.          ...++..+...++.|++.||+|+   |.++|+|||||.+|||          |||+|+++.....
T Consensus       197 FeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~c---H~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~  273 (560)
T KOG0600|consen  197 FEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYC---HSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGS  273 (560)
T ss_pred             EecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHH---hhcCeeeccccccceEEcCCCCEEeccccceeeccCCCC
Confidence            43332          23566778888999999999998   6789999999999998          9999999987776


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ...|..+.|.+|.|||.+
T Consensus       274 ~~~T~rVvTLWYRpPELL  291 (560)
T KOG0600|consen  274 APYTSRVVTLWYRPPELL  291 (560)
T ss_pred             cccccceEEeeccChHHh
Confidence            656778899999999975

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-24  Score=225.81  Aligned_cols=150  Identities=30%  Similarity=0.437  Sum_probs=115.7

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHH--hcCCCCceEEEeeeecCCce----e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMK--NIRHRNHVKRISSCSNEDFK----A  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~--~l~H~niv~~~~~~~~~~~~----~  747 (827)
                      .......++||+|+||.||||.+.+ +.||||+++..   ..+.|..|-+|.+  .++|+||++++++-...+..    .
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~~-~~VAVKifp~~---~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eyw  284 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLDN-RLVAVKIFPEQ---EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYW  284 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhccC-ceeEEEecCHH---HHHHHHhHHHHHhccCccchhHHHhhchhccCCcccccee
Confidence            3455666889999999999999875 89999999643   3456777766665  56899999999987665422    2


Q ss_pred             ee-eeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhc------CCCCeEEccCCCccee----------eecccc
Q 047196          748 LD-CLHST--------NCSLNIFDKLNIMIDVASALEYLHFS------HSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       748 l~-~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~------h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                      +. -.|..        .-..+|.+..+|+..+|+||+|||++      |+|+|+|||||+.|||          |||+|.
T Consensus       285 LVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl  364 (534)
T KOG3653|consen  285 LVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLAL  364 (534)
T ss_pred             EEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeE
Confidence            21 12211        23468999999999999999999975      7789999999999999          999999


Q ss_pred             cccCCCcccc-ccceecccccccccC
Q 047196          803 LLTGDRSMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~-~~~~gt~~Y~APE~l  827 (827)
                      .+..+..... ...+||.+|||||++
T Consensus       365 ~~~p~~~~~d~~~qVGT~RYMAPEvL  390 (534)
T KOG3653|consen  365 RLEPGKPQGDTHGQVGTRRYMAPEVL  390 (534)
T ss_pred             EecCCCCCcchhhhhhhhhhcCHHHH
Confidence            8875544322 236799999999985

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.90  E-value=5e-24  Score=229.37  Aligned_cols=146  Identities=32%  Similarity=0.512  Sum_probs=115.9

Q ss_pred             cccceEecCCceEEEEEEecCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-c--eeeeeec
Q 047196          678 SKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNED-F--KALDCLH  752 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~--~~l~~l~  752 (827)
                      ...+.+|+|+||+||+|.+++...||||++....  ....++|.+|+.+|++++|||||+++|+|.++. .  .+++++.
T Consensus        44 ~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~  123 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMP  123 (362)
T ss_pred             hhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCC
Confidence            3345599999999999999865559999997543  222568999999999999999999999999886 2  2333332


Q ss_pred             ---------c-CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC-eEEccCCCccee-----------eecccccccCCCcc
Q 047196          753 ---------S-TNCSLNIFDKLNIMIDVASALEYLHFSHSTP-VIHCDLKPKNVF-----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ---------~-~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~-iiHrDlK~~NIl-----------DFGla~~~~~~~~~  810 (827)
                               . ....+++..++.+|.+||+|+.|||.   .+ ||||||||+|||           |||+++...... .
T Consensus       124 ~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~---~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-~  199 (362)
T KOG0192|consen  124 GGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHS---EGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK-T  199 (362)
T ss_pred             CCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc---CCCeeecccChhhEEEcCCCCEEEECCCccceeecccc-c
Confidence                     2 24578899999999999999999964   44 999999999998           999998775432 1


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      ..+...||+.|||||++
T Consensus       200 ~~~~~~GT~~wMAPEv~  216 (362)
T KOG0192|consen  200 SMTSVAGTYRWMAPEVL  216 (362)
T ss_pred             cccCCCCCccccChhhh
Confidence            22335699999999986

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.90  E-value=1.5e-24  Score=232.85  Aligned_cols=157  Identities=31%  Similarity=0.554  Sum_probs=124.5

Q ss_pred             chhHHHHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecC
Q 047196          666 SYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNE  743 (827)
Q Consensus       666 ~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~  743 (827)
                      +..++....+.+...+.||+|+||+||||++.+  .||||++...  ...+.+.|+.||..+++-||.||+-++|||..+
T Consensus       383 s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  383 SLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             cccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            345555556667778899999999999999975  7999999754  345678999999999999999999999999998


Q ss_pred             Cceee----------eeeccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          744 DFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       744 ~~~~l----------~~l~~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      ....+          .++|.....++..+.++||.|||+|+.||   |.++|||||||+.||+          |||+|..
T Consensus       461 ~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YL---HAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatv  537 (678)
T KOG0193|consen  461 PLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYL---HAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATV  537 (678)
T ss_pred             ceeeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhh---hhhhhhhhhccccceEEccCCcEEEecccceee
Confidence            87544          34555566777888899999999999999   6899999999999998          9999865


Q ss_pred             ccCCCcccccc-ceecccccccccC
Q 047196          804 LTGDRSMIQTE-TLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~-~~gt~~Y~APE~l  827 (827)
                      .........-. .-|..-|||||+|
T Consensus       538 k~~w~g~~q~~qp~gsilwmAPEvI  562 (678)
T KOG0193|consen  538 KTRWSGEQQLEQPHGSLLWMAPEVI  562 (678)
T ss_pred             eeeeccccccCCCccchhhhcHHHH
Confidence            43221111111 1278889999986

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-24  Score=221.88  Aligned_cols=289  Identities=19%  Similarity=0.154  Sum_probs=171.0

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecC-CCCCCccccccCCCCCCcEEEc
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD-NQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~-N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      ..+.|+|..|+|+.+.+.+|+.+++||+||||+|+|+.+-|++|..+.+|..|-+-+ |+|+......|.+|.+++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            567788888888877777888888888888888888888888888888776664444 7887665566777777777777


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG  257 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (827)
                      .-|++. .++.+.+.-+++|..|.+.+|.+...--..|..+..++.+.+.-|.+-.     ..+++.+..       +..
T Consensus       148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a  214 (498)
T KOG4237|consen  148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLA  214 (498)
T ss_pred             Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHh
Confidence            777766 5666666556666666666666654333356666666666666665320     111111111       111


Q ss_pred             cccccccCcCCCcEEEeecccCcccCchhhhcC-CCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccc
Q 047196          258 EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNM-STVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI  336 (827)
Q Consensus       258 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (827)
                      ..|.++++.....-..+.++++..+-+..|... ..+..-..+.....+..|..-+..+++|+.|+|++|++++.-+.+|
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence            223333444433333444444433222222211 1111111223334445555555577777777777777777777777


Q ss_pred             cCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccc
Q 047196          337 TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKL  416 (827)
Q Consensus       337 ~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  416 (827)
                      ..+..++.|.|..|++.                                        ..-...|.+++.|+.|+|.+|+|
T Consensus       295 e~~a~l~eL~L~~N~l~----------------------------------------~v~~~~f~~ls~L~tL~L~~N~i  334 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLE----------------------------------------FVSSGMFQGLSGLKTLSLYDNQI  334 (498)
T ss_pred             cchhhhhhhhcCcchHH----------------------------------------HHHHHhhhccccceeeeecCCee
Confidence            66666666666555543                                        23334455566666666666666


Q ss_pred             cccccccccCCCCCcEEECCCCCC
Q 047196          417 TGSIPVTFGRLQKLQGLYLPFNKL  440 (827)
Q Consensus       417 ~g~~p~~~~~l~~L~~L~Ls~N~l  440 (827)
                      +..-|..|..+..|..|+|-.|.+
T Consensus       335 t~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  335 TTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             EEEecccccccceeeeeehccCcc
Confidence            666666666666666666655554

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.89  E-value=3.2e-23  Score=201.74  Aligned_cols=149  Identities=31%  Similarity=0.457  Sum_probs=117.2

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchH--HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAM--ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .+|...+++|+|.||.||+|+. .+|+.||||++......  -.....|||+.|+.++|+|||.+++.+...+...+...
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            3577889999999999999985 57999999999765322  12457899999999999999999999877654433222


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.          ....+...+...++.++.+|++|+   |.+.|+|||+||.|+|          |||+|+.+...... 
T Consensus        82 fm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~---H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~-  157 (318)
T KOG0659|consen   82 FMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYC---HSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI-  157 (318)
T ss_pred             eccccHHHHhcccccccCHHHHHHHHHHHHHHHHHH---HhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcc-
Confidence            22          233466667778889999999999   5778999999999998          99999998654432 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .+..+.|.+|+|||.+
T Consensus       158 ~~~~V~TRWYRAPELL  173 (318)
T KOG0659|consen  158 QTHQVVTRWYRAPELL  173 (318)
T ss_pred             cccceeeeeccChHHh
Confidence            3445789999999964

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.89  E-value=6.5e-23  Score=209.87  Aligned_cols=146  Identities=26%  Similarity=0.323  Sum_probs=116.0

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-eeeeeecc
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-KALDCLHS  753 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-~~l~~l~~  753 (827)
                      ++..+.||+|..|+|||++++ +++.+|+|++.... ....++..+|++++++.+||+||+++|++..... ..+-..++
T Consensus        81 le~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYM  160 (364)
T KOG0581|consen   81 LERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYM  160 (364)
T ss_pred             hhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhc
Confidence            345678999999999999865 78999999996543 4456789999999999999999999999988763 44433344


Q ss_pred             CCCCC----------CHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 TNCSL----------NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ~~~~l----------~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      +.+++          .....-.|+.+|.+||.|||+  ++.||||||||+|||          |||.++.+...  . ..
T Consensus       161 DgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS--~-a~  235 (364)
T KOG0581|consen  161 DGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS--I-AN  235 (364)
T ss_pred             CCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh--h-cc
Confidence            44443          334445799999999999984  467999999999999          99999988655  2 23


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      +.+||..|||||-+
T Consensus       236 tfvGT~~YMsPERi  249 (364)
T KOG0581|consen  236 TFVGTSAYMSPERI  249 (364)
T ss_pred             cccccccccChhhh
Confidence            46799999999954

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=1.8e-22  Score=233.98  Aligned_cols=263  Identities=24%  Similarity=0.349  Sum_probs=125.0

Q ss_pred             ccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeec
Q 047196          197 LKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGF  276 (827)
Q Consensus       197 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  276 (827)
                      -..|+++.|.++ .+|..+.  ++|+.|++++|+++. +|..   +++|++|+|++|+|+ .+|..   .++|+.|+|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence            445666666655 3454443  245555555555553 3321   344555555555554 23321   23444555555


Q ss_pred             ccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeec
Q 047196          277 NNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGII  356 (827)
Q Consensus       277 N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~  356 (827)
                      |.++. +|.                            ...+|+.|++++|+++. +|..   .++|+.|++++|++++. 
T Consensus       272 N~L~~-Lp~----------------------------lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-  317 (788)
T PRK15387        272 NPLTH-LPA----------------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-  317 (788)
T ss_pred             Cchhh-hhh----------------------------chhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-
Confidence            54442 121                            11345555555555553 3321   24556666666655531 


Q ss_pred             CCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECC
Q 047196          357 PNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP  436 (827)
Q Consensus       357 p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  436 (827)
                      |.            +       +.+|+.|++++|++++ +|..   ..+|+.|+|++|+|++ +|..   ..+|+.|+++
T Consensus       318 p~------------l-------p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls  370 (788)
T PRK15387        318 PA------------L-------PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAY  370 (788)
T ss_pred             CC------------C-------cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhh
Confidence            11            0       1145556666666653 3331   1356666666666663 3322   2345555666


Q ss_pred             CCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCC
Q 047196          437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPL  516 (827)
Q Consensus       437 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  516 (827)
                      +|++++ +|..   ..+|+.|++++|++++ +|...   ++|+.|++++|++++ +|..+   .+|+.|++++|+++ .+
T Consensus       371 ~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~L  437 (788)
T PRK15387        371 NNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RL  437 (788)
T ss_pred             cccccc-Cccc---ccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-cc
Confidence            666653 4432   2345566666666552 44322   345555555555553 33321   23444555555554 34


Q ss_pred             cccccccccCceEEcccceeeecccccc
Q 047196          517 SLDIGNLRVVIGINLSRNNFSGDIPSTI  544 (827)
Q Consensus       517 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~  544 (827)
                      |..++.++.|..|+|++|+|+|.+|..+
T Consensus       438 P~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        438 PESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4444444444444444444444444443

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.88  E-value=5.1e-23  Score=210.62  Aligned_cols=150  Identities=31%  Similarity=0.403  Sum_probs=118.6

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|+..++||+|+||+||.++. ++++.+|+|++++..   ....+...+|..+|.+++||.||++...+.+++..++.
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            46799999999999999999985 468999999997653   22456788999999999999999999999887765553


Q ss_pred             --eeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 --CLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 --~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                        ++..+        .+.+......-++..|+.||.||   |+.+|||||+||+|||          |||++|....+..
T Consensus       104 ld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~L---H~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~  180 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYL---HSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD  180 (357)
T ss_pred             EeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHH---HhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCC
Confidence              33321        23344444556778889999999   5788999999999999          9999997655443


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      .. .+.+||+.|||||++
T Consensus       181 ~t-~tfcGT~eYmAPEil  197 (357)
T KOG0598|consen  181 AT-RTFCGTPEYMAPEIL  197 (357)
T ss_pred             cc-ccccCCccccChHHH
Confidence            32 336799999999985

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.1e-23  Score=206.05  Aligned_cols=151  Identities=29%  Similarity=0.408  Sum_probs=115.3

Q ss_pred             hcccccceEecCCceEEEEEE-ecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce----e
Q 047196          675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK----A  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~----~  747 (827)
                      .+|...++||+|+||.|||+. ..+|..||.|.+.-.  ..+..+.+..||.+|++++|||||++++.-..++..    +
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            467788999999999999997 678999999998643  244567889999999999999999988743333322    2


Q ss_pred             eeeecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEEccCCCccee----------eeccccc
Q 047196          748 LDCLHS------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTP--VIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       748 l~~l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~--iiHrDlK~~NIl----------DFGla~~  803 (827)
                      |++...            ...........++..|++.||..+|+.. ++  |+||||||.||+          |||++|.
T Consensus        99 mE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~  177 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLGRF  177 (375)
T ss_pred             HHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccc-cccceeeccCcchheEEcCCCceeeccchhHhH
Confidence            222211            1223445556789999999999997633 44  999999999998          9999999


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +..+...+ .+.+|||.||+||.+
T Consensus       178 l~s~~tfA-~S~VGTPyYMSPE~i  200 (375)
T KOG0591|consen  178 LSSKTTFA-HSLVGTPYYMSPERI  200 (375)
T ss_pred             hcchhHHH-HhhcCCCcccCHHHH
Confidence            97665543 456799999999975

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=8.1e-22  Score=228.64  Aligned_cols=267  Identities=23%  Similarity=0.327  Sum_probs=177.9

Q ss_pred             CCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEc
Q 047196          171 SVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISL  250 (827)
Q Consensus       171 ~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  250 (827)
                      .-..|+++.+.++ .+|..+..   +|+.|++++|+++. +|.   .+++|++|++++|+|+. +|..   .++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~~---~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchhc---CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence            4568999999998 79987753   89999999999985 564   35899999999999995 5643   468999999


Q ss_pred             ccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCcccc
Q 047196          251 RNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSG  330 (827)
Q Consensus       251 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  330 (827)
                      ++|.++ .+|..   .++|+.|++++|+++. +|..   +++|+.|++++|.                         +++
T Consensus       270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~-------------------------L~~  316 (788)
T PRK15387        270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ-------------------------LAS  316 (788)
T ss_pred             cCCchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCc-------------------------ccc
Confidence            999998 55653   3678899999999875 3431   2345555555554                         443


Q ss_pred             ccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEe
Q 047196          331 TIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLD  410 (827)
Q Consensus       331 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  410 (827)
                       +|...   .+|..|++++|++++ +|.                   ++.+|+.|+|++|+|++ +|..   .++|+.|+
T Consensus       317 -Lp~lp---~~L~~L~Ls~N~L~~-LP~-------------------lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~  368 (788)
T PRK15387        317 -LPALP---SELCKLWAYNNQLTS-LPT-------------------LPSGLQELSVSDNQLAS-LPTL---PSELYKLW  368 (788)
T ss_pred             -CCCCc---ccccccccccCcccc-ccc-------------------cccccceEecCCCccCC-CCCC---Ccccceeh
Confidence             22211   234445555555442 111                   11246666666666663 3432   24566667


Q ss_pred             ccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccc
Q 047196          411 LEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS  490 (827)
Q Consensus       411 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  490 (827)
                      +++|++++ +|..   ..+|+.|++++|+|++ +|..   .++|+.|++++|++++ +|...   .+|+.|++++|+++ 
T Consensus       369 Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-  435 (788)
T PRK15387        369 AYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-  435 (788)
T ss_pred             hhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-
Confidence            77777664 4432   2457777777777763 5543   2467777888888773 66532   45677888888887 


Q ss_pred             cCCccccccccccccCCCCCCCCCCCccccccc
Q 047196          491 VLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNL  523 (827)
Q Consensus       491 ~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l  523 (827)
                      .+|..+.++++|+.|+|++|.|+|.++..+..+
T Consensus       436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        436 RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            467778888888888888888888777665443

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=7.1e-23  Score=214.29  Aligned_cols=147  Identities=28%  Similarity=0.425  Sum_probs=117.6

Q ss_pred             hcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchHHHHH--HHHHHHHHHhcC-CCCceEEEeeeecCC-ceee-
Q 047196          675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKS--FEAECEVMKNIR-HRNHVKRISSCSNED-FKAL-  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~--~~~Ei~~l~~l~-H~niv~~~~~~~~~~-~~~l-  748 (827)
                      ++|...+.+|.|.||.||+|+ ..+|+.||||+++..-.. +++  =.|||..|+++. |||||++.+.+.+.+ ..++ 
T Consensus        10 ~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fV   88 (538)
T KOG0661|consen   10 DRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFV   88 (538)
T ss_pred             HHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-HHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeee
Confidence            567778899999999999998 457899999999654322 333  268999999999 999999999988776 2222 


Q ss_pred             -eee--------ccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          749 -DCL--------HSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 -~~l--------~~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                       +++        ......+...+...|+.||.+||+|+   |++|+.|||+||+|||          |||+||-+.....
T Consensus        89 fE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hi---Hk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpP  165 (538)
T KOG0661|consen   89 FEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHI---HKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPP  165 (538)
T ss_pred             HHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHH---HhcCcccccCChhheEecccceeEecccccccccccCCC
Confidence             222        12344567778889999999999999   5789999999999998          9999998764433


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                        .|..+.|.+|+|||++
T Consensus       166 --YTeYVSTRWYRAPEvL  181 (538)
T KOG0661|consen  166 --YTEYVSTRWYRAPEVL  181 (538)
T ss_pred             --cchhhhcccccchHHh
Confidence              4667889999999985

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.86  E-value=2.5e-22  Score=213.24  Aligned_cols=149  Identities=34%  Similarity=0.495  Sum_probs=120.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|...+.||+|+||+||||+.+ +++.||+|.+.+..  .+..+...+|++|+++++|||||.+++++......++...
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            46777789999999999999876 57889999997643  4456789999999999999999999999887665544222


Q ss_pred             c---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          752 H---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       752 ~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      +         ..++.+.......|+.++..||.||   |+.+|+|||+||.|||          |||+||....... ..
T Consensus        82 ~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yL---hs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~-vl  157 (808)
T KOG0597|consen   82 YAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYL---HSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTS-VL  157 (808)
T ss_pred             hhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHH---HhcCcccccCCcceeeecCCCceeechhhhhhhcccCce-ee
Confidence            2         2345677777888999999999999   5788999999999999          9999998765433 34


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      +...|||.|||||++
T Consensus       158 tsikGtPlYmAPElv  172 (808)
T KOG0597|consen  158 TSIKGTPLYMAPELV  172 (808)
T ss_pred             eeccCcccccCHHHH
Confidence            445599999999974

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.86  E-value=6.1e-22  Score=198.48  Aligned_cols=151  Identities=25%  Similarity=0.332  Sum_probs=115.5

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchH--HHHHHHHHHHHHHhcCCCCceEEEeeeecC----Cc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAM--ALKSFEAECEVMKNIRHRNHVKRISSCSNE----DF  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~----~~  745 (827)
                      ..++|+..+.|++|+||.||+|+.+ +++.||.|+++.....  ..-.-.|||.+|.+++|||||.+-......    -|
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy  153 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIY  153 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceee
Confidence            3457888899999999999999864 6899999998754321  123457999999999999999977665443    24


Q ss_pred             eeeeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          746 KALDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       746 ~~l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      .+|+++..        ....+...+...+..|+.+|++|||   ..-|+|||||++|+|          |||+||.+...
T Consensus       154 ~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH---~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp  230 (419)
T KOG0663|consen  154 IVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLH---DNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSP  230 (419)
T ss_pred             eeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHh---hceeEecccchhheeeccCCcEEecccchhhhhcCC
Confidence            44444332        1234555667779999999999995   677999999999988          99999998654


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .. ..|..+.|.+|+|||.+
T Consensus       231 ~k-~~T~lVVTLWYRaPELL  249 (419)
T KOG0663|consen  231 LK-PYTPLVVTLWYRAPELL  249 (419)
T ss_pred             cc-cCcceEEEeeecCHHHh
Confidence            33 24556789999999974

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=4.8e-21  Score=223.86  Aligned_cols=274  Identities=16%  Similarity=0.274  Sum_probs=130.3

Q ss_pred             hccCCCHHHHHHHHHHHhhcCCCCC--CcCCCCCCCCCCCCcccc----------------eecCCCCCcEEEEEcCCCC
Q 047196           48 AAASNITTDQQALLALKAHISYDPT--NLLAQNSTSNTSVCNWIG----------------ITCNVNSHRVTALNISSLN  109 (827)
Q Consensus        48 ~~~~~~~~~~~aLl~~k~~~~~~~~--~~l~~w~~~~~~~C~W~g----------------v~C~~~~~~v~~L~L~~~~  109 (827)
                      +.+.....|.+.+++..+.+.+.+.  +.-..|. .++|+|.-..                |.|..  +.||.+...+..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~-~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~  132 (754)
T PRK15370         56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRG-GADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESE  132 (754)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCchhhccccccC-CCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccc
Confidence            4455667888999999998844332  1122376 5678886544                56753  467777665422


Q ss_pred             CccccCccccCCCCCCEEE----CCCCCCCccC---Chhhhh-----ccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196          110 LQGTIPPQLGNLSSLTTLN----LSHNKLSGDI---PPSIFT-----MHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus       110 l~g~~~~~l~~L~~L~~L~----Ls~N~l~g~~---p~~~~~-----l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      .......+-   +.-.+..    -..+.-.+.-   -.++..     ..+...|+++++.++. +|..+.  .+++.|+|
T Consensus       133 ~~~~~~~~~---~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~L  206 (754)
T PRK15370        133 QASSASGSK---DAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLIL  206 (754)
T ss_pred             ccccCCCCC---ChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEe
Confidence            211110000   0000000    0000000000   001111     1234455555555542 232221  24555555


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG  257 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (827)
                      +.|+++ .+|..++   .+|++|++++|+++ .+|..+.  .+|+.|+|++|.++ .+|..+.  ++|+.|++++|+++ 
T Consensus       207 s~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-  275 (754)
T PRK15370        207 DNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-  275 (754)
T ss_pred             cCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-
Confidence            555555 3555443   25666666666665 3444332  35666666666665 4555443  35677777777766 


Q ss_pred             cccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCcccc
Q 047196          258 EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFIT  337 (827)
Q Consensus       258 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (827)
                      .+|..+.  ++|+.|+|++|++++ +|..+.  ++|+.|++++|.+.. +|..+   .++|+.|++++|.+++ +|..+.
T Consensus       276 ~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~  345 (754)
T PRK15370        276 CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL---PPGLKTLEAGENALTS-LPASLP  345 (754)
T ss_pred             ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc---cccceeccccCCcccc-CChhhc
Confidence            4555443  467777777776664 333221  234444455444432 22211   1345555555555543 333332


Q ss_pred             CCCCCcEEEcCCCcce
Q 047196          338 NASKLVYLDMGTNSFS  353 (827)
Q Consensus       338 ~l~~L~~L~Ls~N~l~  353 (827)
                        ++|+.|++++|+++
T Consensus       346 --~sL~~L~Ls~N~L~  359 (754)
T PRK15370        346 --PELQVLDVSKNQIT  359 (754)
T ss_pred             --CcccEEECCCCCCC
Confidence              34555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=2e-23  Score=213.19  Aligned_cols=374  Identities=22%  Similarity=0.232  Sum_probs=177.3

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccc-ccccccccccccCcCCCcEEEe
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRN-NKLRGEIPHEIGYLPNLENLVL  274 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L  274 (827)
                      .-..++|..|+|+...|.+|+.+++|+.|||+.|+|+.+-|+.|.++.+|..|-+.+ |+|+......|++|..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            344555555555555555555555555555555555555555555555554443333 5555333344555555555555


Q ss_pred             ecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccc------------cccCccccCCCCC
Q 047196          275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFS------------GTIPSFITNASKL  342 (827)
Q Consensus       275 s~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~p~~~~~l~~L  342 (827)
                      .-|++..+..+.|..++++..|.+.+|.+. .++...+..+..++.+.+..|.+-            ...|..++...-.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            555555555555555555555555555442 222222224444455544444421            0111111111111


Q ss_pred             cEEEcCCCcceeecCCCcc----------CCCCCCcccCCCc-hhcccccccEEEccCCcCccccCccccCCCCCceEec
Q 047196          343 VYLDMGTNSFSGIIPNTIG----------LTGNPLDGVLPTS-IGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDL  411 (827)
Q Consensus       343 ~~L~Ls~N~l~g~~p~~~~----------l~~n~l~g~~p~~-~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  411 (827)
                      .-..+.++++...-+..+.          .+.....+..|.. |..++ +|+.|+|++|++++.-+.+|.....++.|.|
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            1111222222111111000          0111122222222 22333 5666666666666666666666666666666


Q ss_pred             cCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccc-----------------cCCccccC
Q 047196          412 EGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSG-----------------SIPSCLGN  474 (827)
Q Consensus       412 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~~  474 (827)
                      ..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|.+|+|-.|.+.-                 -.|.+ +.
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C-q~  384 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC-QS  384 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC-CC
Confidence            6666665555556666666666666666666666666666666666666655520                 00100 11


Q ss_pred             CCCCCccccCCCcccc---cCCccc---------ccccccc-ccCCCCCCCCCCCcccccccccCceEEcccceeeeccc
Q 047196          475 LTSLRSPDLGSNRLTS---VLPSTF---------WNLKDIL-FFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIP  541 (827)
Q Consensus       475 l~~L~~L~Ls~N~l~~---~~p~~~---------~~l~~L~-~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip  541 (827)
                      -..++.++++.+.+..   ..|++.         ..++-+. +..-|++.+. .+|..+.  ....++++.+|+++ .+|
T Consensus       385 p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp  460 (498)
T KOG4237|consen  385 PGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVP  460 (498)
T ss_pred             CchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccC
Confidence            1123334444333321   011111         1111121 1222222222 2222211  12346788888887 677


Q ss_pred             ccccCCCCCCEEECCCCcceeecCCCCc---CCceEeCcCC
Q 047196          542 STIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFN  579 (827)
Q Consensus       542 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~N  579 (827)
                      .+  .+.+| .+|+|+|+++..--..|+   +|.+|-+|||
T Consensus       461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            76  56677 888888888765554444   5667777776

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.85  E-value=1.8e-21  Score=199.44  Aligned_cols=150  Identities=27%  Similarity=0.348  Sum_probs=115.0

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCC-ceEEEeeeecCC-----
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRN-HVKRISSCSNED-----  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~n-iv~~~~~~~~~~-----  744 (827)
                      ...|+..++||+|+||+||+|+. .+|+.||+|+++....  .......+|+.++++++|+| ||++.+++...+     
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            34566778899999999999985 5789999999975433  23345689999999999999 999999998766     


Q ss_pred             -ceeeeeeccC----------C---CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecc
Q 047196          745 -FKALDCLHST----------N---CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI  800 (827)
Q Consensus       745 -~~~l~~l~~~----------~---~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGl  800 (827)
                       ..++.+.+..          .   ..++......++.|+.+|++||   |+++|+||||||.|||          |||+
T Consensus        90 ~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~---H~~~IlHRDLKPQNlLi~~~G~lKlaDFGl  166 (323)
T KOG0594|consen   90 GKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFL---HSHGILHRDLKPQNLLISSSGVLKLADFGL  166 (323)
T ss_pred             ceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHH---HhCCeecccCCcceEEECCCCcEeeeccch
Confidence             3323222211          1   1234445678999999999999   5788999999999998          9999


Q ss_pred             cccccCCCccccccceecccccccccC
Q 047196          801 GRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |+........ .+..++|.+|.|||++
T Consensus       167 Ara~~ip~~~-yt~evvTlWYRaPEvL  192 (323)
T KOG0594|consen  167 ARAFSIPMRT-YTPEVVTLWYRAPEVL  192 (323)
T ss_pred             HHHhcCCccc-ccccEEEeeccCHHHh
Confidence            9977533332 3556799999999984

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.84  E-value=2.6e-21  Score=197.69  Aligned_cols=144  Identities=29%  Similarity=0.449  Sum_probs=107.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce---e---
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK---A---  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~---~---  747 (827)
                      -.|...+++|.|+||.||+|... +++.||||+..++...    --+|.++|++++|||||++.-++......   +   
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~----knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY----KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc----CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            35777899999999999999864 5789999998655331    24799999999999999999887653222   1   


Q ss_pred             -eeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccc
Q 047196          748 -LDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLL  804 (827)
Q Consensus       748 -l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~  804 (827)
                       ++++-.           .+......+..-+..|+.+|++|||   +.+|+||||||.|+|           |||.||.+
T Consensus       100 VleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh---~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L  176 (364)
T KOG0658|consen  100 VLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH---SHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVL  176 (364)
T ss_pred             HHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH---hcCcccCCCChheEEEcCCCCeEEeccCCcceee
Confidence             122111           1122333334458889999999996   578999999999998           99999998


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ......  .+..-|..|+|||.+
T Consensus       177 ~~~epn--iSYicSRyYRaPELi  197 (364)
T KOG0658|consen  177 VKGEPN--ISYICSRYYRAPELI  197 (364)
T ss_pred             ccCCCc--eeEEEeccccCHHHH
Confidence            655432  335579999999974

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.84  E-value=8.2e-21  Score=187.71  Aligned_cols=147  Identities=27%  Similarity=0.344  Sum_probs=120.3

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|+..+.+|.|+||+|...+.+ +|..+|+|++.+..   .++.++...|..+|+.+.||.+|++.+.+.+....+|.
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymv  122 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMV  122 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEE
Confidence            357888899999999999999865 68899999997654   23456788999999999999999999999998877764


Q ss_pred             eeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+..+          +.++.....-+|.+|+.|++|||   +..|++||+||+|||          |||+||.+.+.. 
T Consensus       123 meyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH---~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT-  198 (355)
T KOG0616|consen  123 MEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLH---SLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRT-  198 (355)
T ss_pred             EeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH---hcCeeeccCChHHeeeccCCcEEEEeccceEEecCcE-
Confidence            444333          23455556679999999999995   667999999999998          999999886542 


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                         .+-||||.|+|||++
T Consensus       199 ---~TlCGTPeYLAPEii  213 (355)
T KOG0616|consen  199 ---WTLCGTPEYLAPEII  213 (355)
T ss_pred             ---EEecCCccccChHHh
Confidence               235699999999985

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.84  E-value=7.1e-21  Score=199.03  Aligned_cols=152  Identities=28%  Similarity=0.401  Sum_probs=114.8

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch--------------HHHHHHHHHHHHHHhcCCCCceEEE
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA--------------MALKSFEAECEVMKNIRHRNHVKRI  737 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--------------~~~~~~~~Ei~~l~~l~H~niv~~~  737 (827)
                      ....|+....||+|.||+|-+|+. .+++.||||++.+...              ...+...+||.+|++++|+|||+++
T Consensus        95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen   95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            446788889999999999999985 4789999999964221              0135789999999999999999999


Q ss_pred             eeeecCC--ceee--eeeccC-------CCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          738 SSCSNED--FKAL--DCLHST-------NCS-LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       738 ~~~~~~~--~~~l--~~l~~~-------~~~-l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      .+..+..  ..+|  +++..+       .+. ++..+..++.+++..||+|||   .++||||||||+|+|         
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRDIKPsNLLl~~~g~VKI  251 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLH---YQGIIHRDIKPSNLLLSSDGTVKI  251 (576)
T ss_pred             EeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEEcCCCcEEe
Confidence            9987653  2333  333321       122 666778899999999999995   578999999999998         


Q ss_pred             -eecccccccCCC---c-cccccceecccccccccC
Q 047196          797 -DFGIGRLLTGDR---S-MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~~~~~---~-~~~~~~~gt~~Y~APE~l  827 (827)
                       |||.+-......   . ......+|||+|||||.+
T Consensus       252 sDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c  287 (576)
T KOG0585|consen  252 SDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELC  287 (576)
T ss_pred             eccceeeecccCCccccHHHHhhcCCCccccchHhh
Confidence             999886552111   0 111235799999999963

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.84  E-value=5.2e-21  Score=201.10  Aligned_cols=143  Identities=29%  Similarity=0.515  Sum_probs=113.6

Q ss_pred             cceEecCCceEEEEEE-ecCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc--eeeeeecc-
Q 047196          680 ENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF--KALDCLHS-  753 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~--~~l~~l~~-  753 (827)
                      ++++|.|.||+||-|. .++|+.||||++.+-.  .++....+.|++||++++||.||.+.-.|...+.  .+|+.++. 
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD  648 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD  648 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence            4799999999999997 4689999999997642  3345678999999999999999998888776653  34444443 


Q ss_pred             --------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCCcccc
Q 047196          754 --------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 --------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~~~~~  812 (827)
                              +.+.+....-.-.+.||..||.|||   .++|+|.||||+|||             |||+||++....-  .
T Consensus       649 MLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksF--R  723 (888)
T KOG4236|consen  649 MLEMILSSEKGRLPERITKFLVTQILVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSF--R  723 (888)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeecchhhh--h
Confidence                    2345555555567889999999995   578999999999998             9999999875433  2


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      .+.+||++|.||||+
T Consensus       724 rsVVGTPAYLaPEVL  738 (888)
T KOG4236|consen  724 RSVVGTPAYLAPEVL  738 (888)
T ss_pred             hhhcCCccccCHHHH
Confidence            456799999999985

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.84  E-value=1e-20  Score=197.50  Aligned_cols=149  Identities=30%  Similarity=0.446  Sum_probs=115.2

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc----eeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF----KALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~----~~l~~  750 (827)
                      ++...+.||+|+||.||++... +|+..|||.+........+.+++|+++|++++|||||+++|.....+.    .+|++
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy   97 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEY   97 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeec
Confidence            4667789999999999999865 499999999876533336678999999999999999999997433331    22344


Q ss_pred             eccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccC--CC
Q 047196          751 LHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTG--DR  808 (827)
Q Consensus       751 l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~--~~  808 (827)
                      ...+         .+.+.......+.++|.+||+||   |+++||||||||+|||           |||.|+....  ..
T Consensus        98 ~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~yl---Hs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~  174 (313)
T KOG0198|consen   98 APGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYL---HSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTK  174 (313)
T ss_pred             cCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH---HhCCEeccCcccceEEEeCCCCeEEeccCcccccccccccc
Confidence            3321         12567777888999999999999   4889999999999998           9999987764  21


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ........||+.|||||++
T Consensus       175 ~~~~~~~~Gtp~~maPEvi  193 (313)
T KOG0198|consen  175 SDSELSVQGTPNYMAPEVI  193 (313)
T ss_pred             ccccccccCCccccCchhh
Confidence            1122345699999999985

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.83  E-value=4.1e-21  Score=205.91  Aligned_cols=148  Identities=28%  Similarity=0.508  Sum_probs=117.6

Q ss_pred             cccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeec-
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLH-  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~-  752 (827)
                      .+...+.||+|.||.||.|.+.....||||.+... ....+.|.+|+++|++++|++||+++|.|..++..++  +++. 
T Consensus       207 ~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~  285 (468)
T KOG0197|consen  207 ELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPK  285 (468)
T ss_pred             HHHHHHHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEeccc
Confidence            34456789999999999999988789999998765 3455789999999999999999999999998773333  3332 


Q ss_pred             --------c-CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 --------S-TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 --------~-~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                              . ....+...+.+.++.|||+|++||   .++++|||||.+.|||          |||+||...++......
T Consensus       286 GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YL---es~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~  362 (468)
T KOG0197|consen  286 GSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYL---ESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASE  362 (468)
T ss_pred             CcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHH---HhCCccchhhhhhheeeccCceEEEcccccccccCCCceeecC
Confidence                    2 234566778889999999999999   4778999999999999          99999965555443333


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ..--...|.|||.+
T Consensus       363 ~~kfPIkWtAPEa~  376 (468)
T KOG0197|consen  363 GGKFPIKWTAPEAL  376 (468)
T ss_pred             CCCCCceecCHHHH
Confidence            33347789999964

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.4e-21  Score=206.33  Aligned_cols=144  Identities=27%  Similarity=0.377  Sum_probs=113.1

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce--eee
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK--ALD  749 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~--~l~  749 (827)
                      .|.+.+.||.|+||.||-|+. ++.+.||||++.-..   ...++.+..||..|++++|||.|.+-|+|..+.-.  +|+
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            467778899999999999985 467899999997543   34567889999999999999999999998776533  333


Q ss_pred             eeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          750 CLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       750 ~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      |..+.        ...+...+...|..|+.+||+|||   +.+.||||||+.|||          |||.|.+..+..   
T Consensus       107 YClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLH---S~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAn---  180 (948)
T KOG0577|consen  107 YCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPAN---  180 (948)
T ss_pred             HHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH---HhhHHhhhccccceEecCCCeeeeccccchhhcCchh---
Confidence            33221        233445555668889999999995   667899999999999          999888765443   


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                        +.+|||+|||||||
T Consensus       181 --sFvGTPywMAPEVI  194 (948)
T KOG0577|consen  181 --SFVGTPYWMAPEVI  194 (948)
T ss_pred             --cccCCccccchhHh
Confidence              36799999999986

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.8e-20  Score=202.43  Aligned_cols=151  Identities=24%  Similarity=0.384  Sum_probs=118.8

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc----ch-HHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN----CA-MALKSFEAECEVMKNIR-HRNHVKRISSCSNEDF  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~----~~-~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~  745 (827)
                      ..+.|...+.||+|+||+||.|+. .+|+.||||.+...    .. ...+...+|+.++++++ ||||++++.++.....
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            346788899999999999999975 56899999977543    11 23456778999999999 9999999999988776


Q ss_pred             eeeeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccc
Q 047196          746 KALDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLL  804 (827)
Q Consensus       746 ~~l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~  804 (827)
                      .++...+..+          +.+...+...+..|++.|++|+   |+++|+||||||+|||           |||+++..
T Consensus        95 ~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~---H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYC---HSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAIS  171 (370)
T ss_pred             EEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHH---HhCCEeeCCCCHHHEEecCCCCCEEEecccccccc
Confidence            5543333222          4556667778999999999999   5789999999999998           99999987


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..... .....+||+.|+|||++
T Consensus       172 ~~~~~-~l~t~cGsp~Y~aPEvl  193 (370)
T KOG0583|consen  172 PGEDG-LLKTFCGSPAYAAPEVL  193 (370)
T ss_pred             CCCCC-cccCCCCCcccCCHHHh
Confidence            42212 23446799999999985

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=8.1e-21  Score=203.93  Aligned_cols=149  Identities=26%  Similarity=0.394  Sum_probs=120.0

Q ss_pred             hcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~l~~l  751 (827)
                      ..|....+||+|+.|.||.|+ ..++..||||++........+-...|+.+|+..+|+|||.++..+...+  +.+|+++
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym  352 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYM  352 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeec
Confidence            346667889999999999997 4678999999998766555566889999999999999999999887665  4445555


Q ss_pred             ccCC-------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          752 HSTN-------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       752 ~~~~-------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      ..+.       ..++..+...|++++.+||+||   |.++|+|||||++|||          |||+++.+...... ..+
T Consensus       353 ~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fL---H~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~K-R~T  428 (550)
T KOG0578|consen  353 EGGSLTDVVTKTRMTEGQIAAICREILQGLKFL---HARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSK-RST  428 (550)
T ss_pred             CCCchhhhhhcccccHHHHHHHHHHHHHHHHHH---HhcceeeeccccceeEeccCCcEEEeeeeeeeccccccCc-ccc
Confidence            4432       2345566778999999999999   5788999999999999          99999888665542 345


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      .+||++|||||++
T Consensus       429 mVGTPYWMAPEVv  441 (550)
T KOG0578|consen  429 MVGTPYWMAPEVV  441 (550)
T ss_pred             ccCCCCccchhhh
Confidence            6799999999985

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2.6e-20  Score=193.57  Aligned_cols=149  Identities=28%  Similarity=0.441  Sum_probs=111.0

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHH--hcCCCCceEEEeeeecCCc----eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMK--NIRHRNHVKRISSCSNEDF----KAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~--~l~H~niv~~~~~~~~~~~----~~l  748 (827)
                      +.....+.||+|.||.||+|+++ |+.||||++....+   +.+.+|.+|.+  .+||+||..++++-..+..    .++
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srdE---~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwL  286 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRDE---RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWL  286 (513)
T ss_pred             heeEEEEEecCccccceeecccc-CCceEEEEecccch---hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEE
Confidence            34566789999999999999997 68999999965543   34666777666  5699999999987544321    122


Q ss_pred             eeeccCC---------CCCCHHHHHHHHHHHHHHHHHHHh-----cCCCCeEEccCCCccee----------eecccccc
Q 047196          749 DCLHSTN---------CSLNIFDKLNIMIDVASALEYLHF-----SHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       749 ~~l~~~~---------~~l~~~~~~~i~~~ia~~L~~Lh~-----~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      ...+.+.         ..++....++++..+|.||++||.     .-+|.|.|||||+.|||          |+|+|-..
T Consensus       287 vTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h  366 (513)
T KOG2052|consen  287 VTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH  366 (513)
T ss_pred             eeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEe
Confidence            2222222         234556678999999999999994     35789999999999999          99999766


Q ss_pred             cCCCcc---ccccceecccccccccC
Q 047196          805 TGDRSM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~---~~~~~~gt~~Y~APE~l  827 (827)
                      ..+...   .....+||.+|||||++
T Consensus       367 ~~~t~~idi~~N~rVGTKRYMAPEvL  392 (513)
T KOG2052|consen  367 DSDTDTIDIPPNPRVGTKRYMAPEVL  392 (513)
T ss_pred             cccCCcccCCCCCccceeeccChHHh
Confidence            544322   23456799999999986

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=2.1e-20  Score=218.48  Aligned_cols=16  Identities=6%  Similarity=-0.095  Sum_probs=9.4

Q ss_pred             CCHHHHHHHHHHHhhc
Q 047196           52 NITTDQQALLALKAHI   67 (827)
Q Consensus        52 ~~~~~~~aLl~~k~~~   67 (827)
                      |.+.+.+|+--+..-.
T Consensus        39 ~~~~~~~~~~~~~~~~   54 (754)
T PRK15370         39 SSEHQVEAQNCIAYLC   54 (754)
T ss_pred             ccchHHHHHHHHHHHh
Confidence            4455666766666544

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=8e-21  Score=182.54  Aligned_cols=149  Identities=24%  Similarity=0.365  Sum_probs=116.8

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      +.++|+.++.+|+|.||.||.|+. +++..||+|++.+..   .+..+++.+||+|-+.++||||.++++++.++...++
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            346789999999999999999985 468899999986532   2234679999999999999999999999998876666


Q ss_pred             eeeccCCC------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          749 DCLHSTNC------------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       749 ~~l~~~~~------------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      ...+...+            .++......+..|+|.|+.|+   |.++||||||||+|+|          |||.+-.-..
T Consensus       100 ilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~---h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~  176 (281)
T KOG0580|consen  100 ILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYC---HLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  176 (281)
T ss_pred             EEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHh---ccCCcccCCCCHHHhccCCCCCeeccCCCceeecCC
Confidence            44443222            234444567889999999998   6889999999999998          9998754432


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..   ....+||.-|.|||+.
T Consensus       177 ~k---R~tlcgt~dyl~pEmv  194 (281)
T KOG0580|consen  177 NK---RKTLCGTLDYLPPEMV  194 (281)
T ss_pred             CC---ceeeecccccCCHhhc
Confidence            21   2345799999999974

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.81  E-value=8.3e-22  Score=189.11  Aligned_cols=149  Identities=28%  Similarity=0.441  Sum_probs=116.7

Q ss_pred             hhcccccceEecCCceEEEEEE-ecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++.|+..++||+|.|+.||++. .++|+.+|+|++...  .....++.++|++|-+.++|||||++...+.++.+.++.+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            3556777889999999999996 467999999987543  2335678899999999999999999999999988888766


Q ss_pred             eccCCCCC----------CHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCC
Q 047196          751 LHSTNCSL----------NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGD  807 (827)
Q Consensus       751 l~~~~~~l----------~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~  807 (827)
                      ....+..+          +....-...+||.+++.|+   |.++|||||+||+|++             |||+|..+. +
T Consensus        90 e~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yC---H~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~-~  165 (355)
T KOG0033|consen   90 DLVTGGELFEDIVAREFYSEADASHCIQQILEALAYC---HSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN-D  165 (355)
T ss_pred             ecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCceeccCChhheeeeeccCCCceeecccceEEEeC-C
Confidence            55443321          2223335677888888888   6889999999999988             999999887 3


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +.. -...+|||+|||||++
T Consensus       166 g~~-~~G~~GtP~fmaPEvv  184 (355)
T KOG0033|consen  166 GEA-WHGFAGTPGYLSPEVL  184 (355)
T ss_pred             ccc-cccccCCCcccCHHHh
Confidence            332 2345699999999984

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.81  E-value=3.5e-20  Score=197.21  Aligned_cols=152  Identities=28%  Similarity=0.395  Sum_probs=118.2

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCcee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~  747 (827)
                      ...+|..++.||+|+|++||+|+. +++++||||++.+..   ....+-..+|-++|.++ .||.||+++--+.++...+
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLY  150 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLY  150 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceE
Confidence            446788899999999999999985 568999999997542   22234567888999999 8999999998888776544


Q ss_pred             eeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          748 LDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       748 l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +...+..          .+.++......+|.+|..|++||   |+.+||||||||+|||          |||.|+.+.+.
T Consensus       151 FvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleyl---H~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~  227 (604)
T KOG0592|consen  151 FVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYL---HSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPS  227 (604)
T ss_pred             EEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHH---HhcCceeccCChhheeEcCCCcEEEeeccccccCChh
Confidence            4333322          24566666677999999999999   6889999999999999          99999998542


Q ss_pred             Ccc----------cc--ccceecccccccccC
Q 047196          808 RSM----------IQ--TETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~----------~~--~~~~gt~~Y~APE~l  827 (827)
                      ...          ..  .+.+||..|++||++
T Consensus       228 ~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL  259 (604)
T KOG0592|consen  228 QKSQENPVDPNQASSRRSSFVGTAEYVSPELL  259 (604)
T ss_pred             hccccCccCcccccCcccceeeeecccCHHHh
Confidence            211          11  346799999999985

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.81  E-value=2.5e-20  Score=185.36  Aligned_cols=155  Identities=25%  Similarity=0.408  Sum_probs=122.8

Q ss_pred             cchhHHHHHhhcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeec
Q 047196          665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSN  742 (827)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~  742 (827)
                      -+|+|+.+-|+     +.+|+|+|+.|..+. +.+|.++|||++.+...+...+..+|++++...+ |+||+++++++.+
T Consensus        73 g~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd  147 (463)
T KOG0607|consen   73 GKFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED  147 (463)
T ss_pred             chHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc
Confidence            35788887775     579999999999996 6789999999998887778889999999999996 9999999999998


Q ss_pred             CCceeeeeeccCCCC----------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eec
Q 047196          743 EDFKALDCLHSTNCS----------LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFG  799 (827)
Q Consensus       743 ~~~~~l~~l~~~~~~----------l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFG  799 (827)
                      ++..++.+....++.          ++..+.-+|..+||.||.||   |.++|.|||+||+|||             ||-
T Consensus       148 d~~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFl---H~kgIAHRDlKPENiLC~~pn~vsPvKiCDfD  224 (463)
T KOG0607|consen  148 DTRFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFL---HTKGIAHRDLKPENILCESPNKVSPVKICDFD  224 (463)
T ss_pred             cceEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHH---hhcCcccccCCccceeecCCCCcCceeeeccc
Confidence            887777665544332          34455668999999999999   6899999999999999             666


Q ss_pred             ccccc--cCCCcccc----ccceecccccccccC
Q 047196          800 IGRLL--TGDRSMIQ----TETLVTIGYMAPGLL  827 (827)
Q Consensus       800 la~~~--~~~~~~~~----~~~~gt~~Y~APE~l  827 (827)
                      ++...  ..+-+.+.    .+.+|+..||||||.
T Consensus       225 LgSg~k~~~~~spastP~L~tPvGSAEfMAPEVV  258 (463)
T KOG0607|consen  225 LGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVV  258 (463)
T ss_pred             cccccccCCCCCCCCCccccCcccchhhcchhHH
Confidence            55433  33322222    234588899999974

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.3e-20  Score=201.89  Aligned_cols=143  Identities=27%  Similarity=0.441  Sum_probs=116.3

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCCCCCC
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLN  759 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~~~l~  759 (827)
                      -++|+|.||+||-|+.. +...+|||.++....+..+....||.+.++++|+|||+++|+|.+..+..+...+..+++++
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            47999999999999965 56779999998877777788899999999999999999999999888766555555555443


Q ss_pred             H-------------HHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCccccccc
Q 047196          760 I-------------FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       760 ~-------------~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~~~~~~  815 (827)
                      -             ...--+.+||.+||.|||   +..|||||||-.|||           |||.+|.+.+-..+..+ .
T Consensus       661 sLLrskWGPlKDNEstm~fYtkQILeGLkYLH---en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TET-F  736 (1226)
T KOG4279|consen  661 SLLRSKWGPLKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTET-F  736 (1226)
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHhhhhh---hcceeeccccCCcEEEeeccceEEecccccchhhccCCccccc-c
Confidence            2             222347789999999995   566999999999998           99999988776655332 3


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .||..|||||+|
T Consensus       737 TGTLQYMAPEvI  748 (1226)
T KOG4279|consen  737 TGTLQYMAPEVI  748 (1226)
T ss_pred             ccchhhhChHhh
Confidence            499999999986

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.81  E-value=1.3e-19  Score=197.02  Aligned_cols=148  Identities=29%  Similarity=0.435  Sum_probs=118.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceee-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKAL-  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l-  748 (827)
                      +.|+..+.||+|.||.||+++.+ +|+.+|+|++.+...   .....+.+|+++|+++. |||+|.+.+.+...+..++ 
T Consensus        35 ~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lv  114 (382)
T KOG0032|consen   35 EKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLV  114 (382)
T ss_pred             ccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEE
Confidence            45777789999999999999865 599999999976543   23467899999999999 9999999999988874443 


Q ss_pred             -eeeccCC------C-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eecccccccC
Q 047196          749 -DCLHSTN------C-SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRLLTG  806 (827)
Q Consensus       749 -~~l~~~~------~-~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~~~~~  806 (827)
                       +....+.      . .++..+...++.+++.++.|+|   +.+|+|||+||+|+|              |||+|+....
T Consensus       115 mEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH---~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~  191 (382)
T KOG0032|consen  115 MELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLH---SLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP  191 (382)
T ss_pred             EEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHH---hCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC
Confidence             3332211      1 1566777889999999999995   589999999999998              9999998876


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      . . .....+||++|+|||++
T Consensus       192 ~-~-~~~~~~Gtp~y~APEvl  210 (382)
T KOG0032|consen  192 G-E-RLHTIVGTPEYVAPEVL  210 (382)
T ss_pred             C-c-eEeeecCCccccCchhh
Confidence            2 2 22446799999999985

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.80  E-value=6.8e-20  Score=201.73  Aligned_cols=161  Identities=28%  Similarity=0.450  Sum_probs=128.5

Q ss_pred             ccchhHHHHHhhccc---------ccceEecCCceEEEEEEec----CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcC
Q 047196          664 RFSYQDLFRATEKFS---------KENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIR  729 (827)
Q Consensus       664 ~~~~~~~~~~~~~~~---------~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~  729 (827)
                      .++|+|.-+|...|.         .+++||.|.||.||+|+++    ....||||.++... +++..+|..|+.||++.+
T Consensus       609 P~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFd  688 (996)
T KOG0196|consen  609 PHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFD  688 (996)
T ss_pred             CccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCC
Confidence            467888777776664         3589999999999999875    24679999998764 456778999999999999


Q ss_pred             CCCceEEEeeeecCCceeeeeeccCCCCC-----------CHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          730 HRNHVKRISSCSNEDFKALDCLHSTNCSL-----------NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       730 H~niv~~~~~~~~~~~~~l~~l~~~~~~l-----------~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                      ||||+++.|........++...+++++.|           .+.+...+.++||.|+.||   .+.+.|||||.+.|||  
T Consensus       689 HPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYL---sdm~YVHRDLAARNILVN  765 (996)
T KOG0196|consen  689 HPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYL---SDMNYVHRDLAARNILVN  765 (996)
T ss_pred             CCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHH---hhcCchhhhhhhhheeec
Confidence            99999999999888776665555555444           4445667899999999999   5788999999999999  


Q ss_pred             --------eecccccccCCCcccccccee--cccccccccC
Q 047196          797 --------DFGIGRLLTGDRSMIQTETLV--TIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~~~~~~~g--t~~Y~APE~l  827 (827)
                              |||++|.+.++.....+..-|  ..+|.|||.|
T Consensus       766 snLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAI  806 (996)
T KOG0196|consen  766 SNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAI  806 (996)
T ss_pred             cceEEEeccccceeecccCCCccccccCCccceeecChhHh
Confidence                    999999887665443332223  6789999975

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=6.8e-20  Score=187.04  Aligned_cols=153  Identities=28%  Similarity=0.406  Sum_probs=114.9

Q ss_pred             HHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcc--cchHHHHHHHHHHHHHHhcCCCCceEEEeeeecC---Cc
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQ--NCAMALKSFEAECEVMKNIRHRNHVKRISSCSNE---DF  745 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~--~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~---~~  745 (827)
                      ...+.|...+.||+|+||.|+.|.. .+|+.||||++..  ......++-.||+++|+.++|+|||.+.+....+   .+
T Consensus        19 ~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f   98 (359)
T KOG0660|consen   19 EIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKF   98 (359)
T ss_pred             eccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccc
Confidence            3445566678899999999999986 4789999999863  3344567789999999999999999998887552   21


Q ss_pred             e--ee--eeec-------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          746 K--AL--DCLH-------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       746 ~--~l--~~l~-------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      .  ++  +.+.       ..+..+......-+..|+.+||.|+   |+.+|+|||+||+|++          |||+||..
T Consensus        99 ~DvYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyi---HSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~  175 (359)
T KOG0660|consen   99 NDVYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYI---HSANVIHRDLKPSNLLLNADCDLKICDFGLARYL  175 (359)
T ss_pred             ceeEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchh---hcccccccccchhheeeccCCCEEeccccceeec
Confidence            1  11  1111       1122366666667889999999999   6788999999999998          99999988


Q ss_pred             cCCC-ccccccceecccccccccC
Q 047196          805 TGDR-SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~-~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... ....|..+.|.+|.|||++
T Consensus       176 ~~~~~~~~mTeYVaTRWYRAPEll  199 (359)
T KOG0660|consen  176 DKFFEDGFMTEYVATRWYRAPELL  199 (359)
T ss_pred             cccCcccchhcceeeeeecCHHHH
Confidence            5431 1123567789999999974

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.79  E-value=3.4e-19  Score=197.00  Aligned_cols=152  Identities=21%  Similarity=0.238  Sum_probs=117.2

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ..++|+..+.||+|+||.||+|+.. +++.||+|++....   ....+.+.+|+++++.++|||||++++++..+...++
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM  120 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            3467888999999999999999865 58899999986422   2234568899999999999999999999988776555


Q ss_pred             eeeccCC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          749 DCLHSTN---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 ~~l~~~~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ...+...         ..+.......++.+++.||+|||   +++|+||||||+|||          |||+|+.......
T Consensus       121 v~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~  197 (370)
T cd05621         121 VMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGM  197 (370)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEEecccceecccCCc
Confidence            4333322         23455566778999999999995   678999999999998          9999987643322


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ......+||++|||||++
T Consensus       198 ~~~~~~~gt~~Y~aPE~~  215 (370)
T cd05621         198 VRCDTAVGTPDYISPEVL  215 (370)
T ss_pred             eecccCCCCcccCCHHHH
Confidence            222334599999999964

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.79  E-value=5.9e-20  Score=201.61  Aligned_cols=146  Identities=29%  Similarity=0.463  Sum_probs=114.4

Q ss_pred             ccccceEecCCceEEEEEE-ecCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--------ce
Q 047196          677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--------FK  746 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--------~~  746 (827)
                      +...+.+|+|+||.||+|+ ..+|+.||||.++... ....++.-+|+++|++++|+|||++++.-....        ..
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            4456789999999999999 4579999999987532 334566789999999999999999988754432        12


Q ss_pred             eeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eeccc
Q 047196          747 ALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIG  801 (827)
Q Consensus       747 ~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla  801 (827)
                      +|++...+           ...+...+.+.+..+++.|+.|||   +.+|+||||||.||+              |||.|
T Consensus        95 vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A  171 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA  171 (732)
T ss_pred             EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeeccccc
Confidence            23333221           135777788899999999999995   778999999999998              99999


Q ss_pred             ccccCCCccccccceecccccccccC
Q 047196          802 RLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |-+.++..  .++.+||..|.|||++
T Consensus       172 rel~d~s~--~~S~vGT~~YLhPel~  195 (732)
T KOG4250|consen  172 RELDDNSL--FTSLVGTEEYLHPELY  195 (732)
T ss_pred             ccCCCCCe--eeeecCchhhcChHHH
Confidence            99876553  2456699999999974

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.79  E-value=8.2e-20  Score=167.32  Aligned_cols=148  Identities=28%  Similarity=0.381  Sum_probs=113.6

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..++||+|.||+||||+. .+++.||.|+++.+  .........+||.+++.++|+|||++++....+....+.+.+
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            466678899999999999984 56899999998653  233345678999999999999999999887766654443222


Q ss_pred             ----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                                ..++.++.......+.|+.+|+.++   |++.+.|||+||.|+|          |||+|+.+...-... 
T Consensus        83 cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fc---hshnvlhrdlkpqnllin~ngelkladfglarafgipvrcy-  158 (292)
T KOG0662|consen   83 CDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFC---HSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCY-  158 (292)
T ss_pred             hhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhh---hhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEee-
Confidence                      1234556666667888999999998   5667999999999988          999999876543332 


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ...+.|.+|.+|.++
T Consensus       159 saevvtlwyrppdvl  173 (292)
T KOG0662|consen  159 SAEVVTLWYRPPDVL  173 (292)
T ss_pred             eceeeeeeccCccee
Confidence            234579999999874

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.79  E-value=4.4e-19  Score=197.29  Aligned_cols=144  Identities=25%  Similarity=0.285  Sum_probs=111.5

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|+..+.||+|+||.||+|.. .+++.||+|+..      .+.+.+|++++++++|||||++++++.......+...+.
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~  165 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRY  165 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecC
Confidence            4688899999999999999986 468999999743      235688999999999999999999887665444322111


Q ss_pred             ---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 ---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                               ....+.+.+...++.++++||+|||   +.+|+||||||+||+          |||+|+............
T Consensus       166 ~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~  242 (391)
T PHA03212        166 KTDLYCYLAAKRNIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYG  242 (391)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHhEEEcCCCCEEEEeCCccccccccccccccc
Confidence                     1234667778899999999999995   568999999999998          999997643322211223


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      .+||++|+|||++
T Consensus       243 ~~gt~~y~aPE~~  255 (391)
T PHA03212        243 WAGTIATNAPELL  255 (391)
T ss_pred             ccCccCCCChhhh
Confidence            4599999999974

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.79  E-value=9.4e-19  Score=186.73  Aligned_cols=146  Identities=21%  Similarity=0.312  Sum_probs=112.9

Q ss_pred             ccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          677 FSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      |+..+.||+|+||.||+|.. .+|+.||||++....   ......+.+|++++++++|++++++.+++...+...+...+
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            66778999999999999985 578999999986432   22334678999999999999999999998776654442222


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+.+.....++.+++.|++|||   +++|+||||||+||+          |||+++....... 
T Consensus        82 ~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~-  157 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET-  157 (285)
T ss_pred             cCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe-
Confidence            11            123566777889999999999995   678999999999997          9999987543222 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....||.+|||||++
T Consensus       158 -~~~~~g~~~y~aPE~~  173 (285)
T cd05631         158 -VRGRVGTVGYMAPEVI  173 (285)
T ss_pred             -ecCCCCCCCccCHhhh
Confidence             1234589999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=9.9e-20  Score=204.76  Aligned_cols=148  Identities=27%  Similarity=0.449  Sum_probs=116.0

Q ss_pred             ccccceEecCCceEEEEEEec------CCcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          677 FSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ....+.||+|+||+||+|+..      +...||||.++..... ..++|+||++++++++|||||+++|.|.+++...|.
T Consensus       488 i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~Mv  567 (774)
T KOG1026|consen  488 IVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMV  567 (774)
T ss_pred             eeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEE
Confidence            344567999999999999753      2467999999876544 678999999999999999999999999998876664


Q ss_pred             eeccC--------------------C----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          750 CLHST--------------------N----CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       750 ~l~~~--------------------~----~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      +.|..                    .    ..++..+.+.||.|||.|++||.   ++.+|||||...|.|         
T Consensus       568 FEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLVge~l~VKI  644 (774)
T KOG1026|consen  568 FEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLVGENLVVKI  644 (774)
T ss_pred             EEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhceeccceEEEe
Confidence            33321                    1    12677888999999999999995   455999999999988         


Q ss_pred             -eecccccc-cCCCccccccceecccccccccC
Q 047196          797 -DFGIGRLL-TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~-~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                       |||++|.+ ..|.........-.++|||||-|
T Consensus       645 sDfGLsRdiYssDYYk~~~~t~lPIRWMppEsI  677 (774)
T KOG1026|consen  645 SDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESI  677 (774)
T ss_pred             cccccchhhhhhhhhcccCCceeeeecCCHHHh
Confidence             99999865 33333333234457899999954

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.79  E-value=4.8e-19  Score=193.90  Aligned_cols=151  Identities=24%  Similarity=0.435  Sum_probs=111.5

Q ss_pred             hhcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~  745 (827)
                      .++|+..++||+|+||.||+|+.      .+++.||||++.... ....+.+.+|+++++++ +|||||+++++|...+.
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG   85 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence            46788889999999999999974      235789999986543 33456789999999999 89999999998876442


Q ss_pred             -e--eeeeeccC--------------------------------------------------------------------
Q 047196          746 -K--ALDCLHST--------------------------------------------------------------------  754 (827)
Q Consensus       746 -~--~l~~l~~~--------------------------------------------------------------------  754 (827)
                       .  .++++...                                                                    
T Consensus        86 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T cd05102          86 PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDD  165 (338)
T ss_pred             ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccc
Confidence             1  22222110                                                                    


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc-cccceecccc
Q 047196          755 --NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI-QTETLVTIGY  821 (827)
Q Consensus       755 --~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~-~~~~~gt~~Y  821 (827)
                        ...+++.+...++.|+++||+|||   +++|+||||||+||+          |||+|+....+.... .....+++.|
T Consensus       166 ~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y  242 (338)
T cd05102         166 LWKSPLTMEDLICYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKW  242 (338)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccc
Confidence              012455667789999999999996   678999999999998          999998764332221 1222367899


Q ss_pred             cccccC
Q 047196          822 MAPGLL  827 (827)
Q Consensus       822 ~APE~l  827 (827)
                      ||||++
T Consensus       243 ~aPE~~  248 (338)
T cd05102         243 MAPESI  248 (338)
T ss_pred             cCcHHh
Confidence            999974

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.78  E-value=8.2e-19  Score=189.04  Aligned_cols=150  Identities=24%  Similarity=0.398  Sum_probs=111.8

Q ss_pred             hcccccceEecCCceEEEEEEecC-----------------CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEE
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-----------------GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKR  736 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-----------------g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~  736 (827)
                      ++|...++||+|+||.||+|++++                 +..||||++.... ....++|.+|++++++++|||||++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            467788899999999999997532                 3479999987543 3345679999999999999999999


Q ss_pred             EeeeecCCceeeeeeccCC-----------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 047196          737 ISSCSNEDFKALDCLHSTN-----------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIH  787 (827)
Q Consensus       737 ~~~~~~~~~~~l~~l~~~~-----------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiH  787 (827)
                      ++++.+.+...+...+...                             ..+.+.....++.+++.|++|||   +.+|+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~ivH  161 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS---SLNFVH  161 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCccc
Confidence            9999876654432222111                             12455667889999999999996   567999


Q ss_pred             ccCCCccee----------eecccccccCCCcc-ccccceecccccccccC
Q 047196          788 CDLKPKNVF----------DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       788 rDlK~~NIl----------DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                      |||||+||+          |||+++.+...... ......++..|||||++
T Consensus       162 ~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  212 (304)
T cd05096         162 RDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECI  212 (304)
T ss_pred             cCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHH
Confidence            999999998          99999865432221 11122357899999973

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.4e-19  Score=176.34  Aligned_cols=151  Identities=23%  Similarity=0.358  Sum_probs=119.1

Q ss_pred             HHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--------hHHHHHHHHHHHHHHhc-CCCCceEEEeeee
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--------AMALKSFEAECEVMKNI-RHRNHVKRISSCS  741 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--------~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~  741 (827)
                      ...+.|...+++|+|..++|.++.. ++|.++|+|++....        ....++-.+|+.||+++ .||+|+++.+.|.
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye   93 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE   93 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence            3446788889999999999999865 578999999986422        12234567899999998 5999999999998


Q ss_pred             cCCceeeeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccc
Q 047196          742 NEDFKALDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIG  801 (827)
Q Consensus       742 ~~~~~~l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla  801 (827)
                      ...+.++.+.-...          ..++..+..+|++++.+|++||   |.+.|||||+||+|||          |||+|
T Consensus        94 s~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeyl---Ha~~IVHRDLKpENILlddn~~i~isDFGFa  170 (411)
T KOG0599|consen   94 SDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYL---HARNIVHRDLKPENILLDDNMNIKISDFGFA  170 (411)
T ss_pred             CcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHH---HHhhhhhcccChhheeeccccceEEecccee
Confidence            88876654332221          2356666778999999999999   5788999999999999          99999


Q ss_pred             ccccCCCccccccceecccccccccC
Q 047196          802 RLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..+......  ...||||||.|||.+
T Consensus       171 ~~l~~GekL--relCGTPgYLAPEti  194 (411)
T KOG0599|consen  171 CQLEPGEKL--RELCGTPGYLAPETI  194 (411)
T ss_pred             eccCCchhH--HHhcCCCcccChhhe
Confidence            988655432  456799999999975

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.78  E-value=6.8e-19  Score=188.10  Aligned_cols=149  Identities=26%  Similarity=0.385  Sum_probs=113.9

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|...+.||+|+||.||+|+.. +++.||+|+++... ......+.+|++++++++|||++++++++..++..++...+
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            46888899999999999999864 68999999986432 22345678999999999999999999998776654432222


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+.+.....++.++++||+|||   +++|+||||||+||+          |||+++........ .
T Consensus        85 ~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~-~  160 (288)
T cd07871          85 LDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKT-Y  160 (288)
T ss_pred             CCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCcc-c
Confidence            11          123456677789999999999995   678999999999998          99998765432221 1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||+.|+|||++
T Consensus       161 ~~~~~~~~y~aPE~~  175 (288)
T cd07871         161 SNEVVTLWYRPPDVL  175 (288)
T ss_pred             cCceecccccChHHh
Confidence            234589999999963

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.78  E-value=1.1e-18  Score=189.66  Aligned_cols=143  Identities=27%  Similarity=0.289  Sum_probs=110.1

Q ss_pred             ceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCC-
Q 047196          681 NLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTN-  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~-  755 (827)
                      ++||+|+||.||+|+. .+|+.||||++....   .....++.+|++++++++||||+++.+++...+..++...+... 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999986 468999999987532   23345688999999999999999999998887755543333222 


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          756 ---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       756 ---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                               ..+.+.....++.|++.||+|||   +.+|+||||||+||+          |||+++........ ....+
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~-~~~~~  156 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGAT-MKTFC  156 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCc-cccee
Confidence                     23566677789999999999995   678999999999998          99998754322221 12345


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      ||+.|||||++
T Consensus       157 gt~~y~aPE~~  167 (323)
T cd05571         157 GTPEYLAPEVL  167 (323)
T ss_pred             cCccccChhhh
Confidence            99999999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.78  E-value=9.8e-19  Score=193.54  Aligned_cols=152  Identities=22%  Similarity=0.243  Sum_probs=116.7

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ..++|+..+.||+|+||.||+|+.. +++.||||++....   ....+.+.+|+++++.++|||++++++++..+...++
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            3467888999999999999999864 68999999986432   2233557899999999999999999999888776555


Q ss_pred             eeeccCCC---------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          749 DCLHSTNC---------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 ~~l~~~~~---------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ...+...+         .+.......++.++++||+|||   +++|+||||||+|||          |||+++.......
T Consensus       121 v~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~  197 (370)
T cd05596         121 VMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGM  197 (370)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCc
Confidence            43333222         2444556678899999999995   678999999999998          9999987644332


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ......+||+.|||||++
T Consensus       198 ~~~~~~~gt~~y~aPE~~  215 (370)
T cd05596         198 VRCDTAVGTPDYISPEVL  215 (370)
T ss_pred             ccCCCCCCCcCeECHHHh
Confidence            222335699999999964

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.78  E-value=1.1e-18  Score=193.02  Aligned_cols=128  Identities=23%  Similarity=0.278  Sum_probs=102.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||+||+|+.. +++.||||++....   ......+.+|++++++++|++||++++.+.+....++..
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            36888899999999999999864 68999999996532   223457889999999999999999999998776554433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      .+..          ...+.+.....++.+++.||+|||   +.+|+||||||+|||          |||+++.+.
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~  152 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIH---QLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK  152 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence            2221          234566777889999999999995   678999999999998          999987653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.78  E-value=1.5e-19  Score=196.22  Aligned_cols=144  Identities=29%  Similarity=0.487  Sum_probs=111.0

Q ss_pred             cceEecCCceEEEEEEec-CCcEEEEEEEcc----cchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc-
Q 047196          680 ENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQ----NCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS-  753 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~----~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~-  753 (827)
                      ..+||+|+|-+||||.+. +|.+||--.++.    ..+...++|..|+++|+.++|+|||+++.++.+.....+..... 
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL  124 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL  124 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence            467999999999999864 588888544432    23455689999999999999999999999998765433322111 


Q ss_pred             -CCC----------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCccc
Q 047196          754 -TNC----------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 -~~~----------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~~  811 (827)
                       ..+          ..+.......++||.+||.|||. |.|||||||||..||+           |.|+|++......  
T Consensus       125 ~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs-~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~a--  201 (632)
T KOG0584|consen  125 FTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHS-QDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHA--  201 (632)
T ss_pred             ccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhc-CCCCccccccccceEEEcCCcCceeecchhHHHHhhcccc--
Confidence             122          23344456799999999999997 7899999999999999           9999998765433  


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                       ...+|||.|||||++
T Consensus       202 -ksvIGTPEFMAPEmY  216 (632)
T KOG0584|consen  202 -KSVIGTPEFMAPEMY  216 (632)
T ss_pred             -ceeccCccccChHHH
Confidence             235699999999974

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.78  E-value=7.9e-20  Score=190.22  Aligned_cols=149  Identities=28%  Similarity=0.359  Sum_probs=116.0

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA--LDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~--l~~  750 (827)
                      ..|...+.||+|+||.||||.. ..++.||+|++.... +...+..++|+.++..++++||.+++|.+..+....  |++
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            3577778999999999999985 568999999997653 345678899999999999999999999987765433  333


Q ss_pred             eccCC--------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          751 LHSTN--------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       751 l~~~~--------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      +..+.        ..++.....-|.+++..|+.|+|   .++.+|||||+.||+          |||+|..+..+.... 
T Consensus        93 ~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr-  168 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLH---SEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR-  168 (467)
T ss_pred             hcCcchhhhhccCCCCccceeeeehHHHHHHhhhhh---hcceecccccccceeEeccCcEEEEecceeeeeechhhcc-
Confidence            33321        11233444457789999999994   678999999999998          999998887655443 


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ...+||+.||||||+
T Consensus       169 ~tfvGTPfwMAPEVI  183 (467)
T KOG0201|consen  169 KTFVGTPFWMAPEVI  183 (467)
T ss_pred             ccccccccccchhhh
Confidence            446799999999986

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.78  E-value=8.8e-19  Score=193.92  Aligned_cols=126  Identities=23%  Similarity=0.293  Sum_probs=102.4

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||||++....   ......+.+|+++++.++|+|||++++++...+..++...
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIME   81 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEEC
Confidence            6788899999999999999864 68999999996532   2334568899999999999999999999988776555333


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      +..          ...+.......++.|++.||+|||   +.+|+||||||+|||          |||+++.+
T Consensus        82 ~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~  151 (364)
T cd05599          82 YLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGL  151 (364)
T ss_pred             CCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEeecccceec
Confidence            221          234566777889999999999995   678999999999998          99998765

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.78  E-value=1.1e-18  Score=192.98  Aligned_cols=156  Identities=22%  Similarity=0.231  Sum_probs=119.0

Q ss_pred             HHHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          669 DLFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       669 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      +.....++|+..+.||+|+||.||+|+.. +++.||+|++....   ....+.+.+|+++++.++|||||++++.+..+.
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR  116 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC
Confidence            34445578999999999999999999865 68899999986422   223456889999999999999999999988777


Q ss_pred             ceeeeeeccCCC---------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          745 FKALDCLHSTNC---------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       745 ~~~l~~l~~~~~---------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      ..++...+...+         .+.......++.+++.||+|||   +++|+||||||+||+          |||+|+...
T Consensus       117 ~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~  193 (371)
T cd05622         117 YLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMN  193 (371)
T ss_pred             EEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcC
Confidence            655433332222         2344556678899999999995   678999999999998          999998765


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..........+||+.|||||++
T Consensus       194 ~~~~~~~~~~~gt~~y~aPE~l  215 (371)
T cd05622         194 KEGMVRCDTAVGTPDYISPEVL  215 (371)
T ss_pred             cCCcccccCcccCccccCHHHH
Confidence            4332222335699999999974

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.78  E-value=3.5e-19  Score=194.31  Aligned_cols=151  Identities=31%  Similarity=0.465  Sum_probs=114.3

Q ss_pred             HhhcccccceEecCCceEEEEEEecC--C--cE-EEEEEEcc---cchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHD--G--IE-VAIKVFHQ---NCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~--g--~~-vAvK~l~~---~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      ..++....++||+|+||.||+|+++.  +  .. ||||....   ....+.++|.+|+++|++++|||||+++|++....
T Consensus       155 ~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~  234 (474)
T KOG0194|consen  155 SHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEE  234 (474)
T ss_pred             eccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC
Confidence            34445556899999999999998643  3  23 89999875   23566789999999999999999999999998766


Q ss_pred             ceee--eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          745 FKAL--DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       745 ~~~l--~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      ..++  +....         ....++..+++.++.++|+||+||   |++++|||||-+.|+|          |||+++.
T Consensus       235 Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YL---h~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~  311 (474)
T KOG0194|consen  235 PLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYL---HSKNCIHRDIAARNCLYSKKGVVKISDFGLSRA  311 (474)
T ss_pred             ccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHH---HHCCCcchhHhHHHheecCCCeEEeCccccccC
Confidence            5443  33322         223578899999999999999999   5788999999999998          9999876


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      -... ........-...|+|||.+
T Consensus       312 ~~~~-~~~~~~~klPirWLAPEtl  334 (474)
T KOG0194|consen  312 GSQY-VMKKFLKKLPIRWLAPETL  334 (474)
T ss_pred             Ccce-eeccccccCcceecChhhh
Confidence            4311 1111111246789999974

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.77  E-value=2.5e-20  Score=183.53  Aligned_cols=147  Identities=27%  Similarity=0.315  Sum_probs=114.4

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +-|+..+++|+|+||.||||.. ..|..||||++....  ..++...||.+|++.+.+.+|+++|.|......++...+.
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            3477778999999999999975 469999999987643  4678899999999999999999999997765444433332


Q ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          754 T-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 ~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      +           ...+...+.-.|.+...+||+|||...   -||||||+.|||          |||.|..+.+... ..
T Consensus       111 GAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~---KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMA-KR  186 (502)
T KOG0574|consen  111 GAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLK---KIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMA-KR  186 (502)
T ss_pred             CCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHH---HHHhhcccccEEEcccchhhhhhccccchhhhhHH-hh
Confidence            2           234555555668889999999998654   689999999999          9999988764322 12


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      .+..||+.|||||||
T Consensus       187 NTVIGTPFWMAPEVI  201 (502)
T KOG0574|consen  187 NTVIGTPFWMAPEVI  201 (502)
T ss_pred             CccccCcccccHHHH
Confidence            334599999999985

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.77  E-value=1.4e-18  Score=180.90  Aligned_cols=150  Identities=28%  Similarity=0.389  Sum_probs=115.6

Q ss_pred             hcccccceEecCCceEEEEEE-ecCCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--ee
Q 047196          675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~  750 (827)
                      +.|+..++||.|.-++||+|+ .+.++.||||++... +....+...+|++.|+-++|||||+++..+..+...++  .+
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpf  105 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPF  105 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehh
Confidence            568888999999999999997 567899999999753 33446889999999999999999999988877664443  22


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +..+          ...++......|.+++.+||.||   |.+|-||||+|+.|||          |||....+...+..
T Consensus       106 Ma~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YL---H~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R  182 (516)
T KOG0582|consen  106 MAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYL---HQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDR  182 (516)
T ss_pred             hcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHH---HhcCceecccccccEEEcCCCcEEEcCceeeeeecccCce
Confidence            2211          12245555667889999999999   5788999999999999          99977665443322


Q ss_pred             --cc-ccceecccccccccC
Q 047196          811 --IQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       811 --~~-~~~~gt~~Y~APE~l  827 (827)
                        .. ...+||+.|||||++
T Consensus       183 ~~~rf~tfvgtp~wmAPEvl  202 (516)
T KOG0582|consen  183 QVTRFNTFVGTPCWMAPEVL  202 (516)
T ss_pred             eeEeeccccCcccccChHHh
Confidence              12 334699999999983

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.77  E-value=1.4e-18  Score=191.46  Aligned_cols=149  Identities=26%  Similarity=0.364  Sum_probs=114.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|+|||++++++...+..++...+
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  153 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEF  153 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEec
Confidence            34566688999999999999864 68999999986543 33456789999999999999999999998776655443333


Q ss_pred             cCCC------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          753 STNC------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       753 ~~~~------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                      ...+      .........++.++++||+|||   +.+|+||||||+|||          |||+++.+...... ....+
T Consensus       154 ~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~-~~~~~  229 (353)
T PLN00034        154 MDGGSLEGTHIADEQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDP-CNSSV  229 (353)
T ss_pred             CCCCcccccccCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEcccccceeccccccc-ccccc
Confidence            2222      2344556789999999999996   678999999999998          99999876433221 12346


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      ||..|+|||++
T Consensus       230 gt~~y~aPE~~  240 (353)
T PLN00034        230 GTIAYMSPERI  240 (353)
T ss_pred             cCccccCcccc
Confidence            89999999974

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=1.1e-18  Score=190.46  Aligned_cols=150  Identities=23%  Similarity=0.278  Sum_probs=115.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||.||+++.. +++.||||++....   ....+.+.+|+.+++.++|+||+++.+++.+++..++..
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            36788899999999999999864 68999999986421   223456889999999999999999999988777655433


Q ss_pred             eccCC-----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          751 LHSTN-----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       751 l~~~~-----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      .+...           ..+.......++.|++.|++|||   +++|+||||||+||+          |||+++.+.....
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGT  157 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCC
Confidence            32221           23455566778999999999995   678999999999998          9999876644333


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ......+||++|||||++
T Consensus       158 ~~~~~~~gt~~y~aPE~~  175 (331)
T cd05597         158 VQSNVAVGTPDYISPEIL  175 (331)
T ss_pred             ccccceeccccccCHHHH
Confidence            222234589999999974

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.77  E-value=1.5e-18  Score=193.12  Aligned_cols=126  Identities=21%  Similarity=0.254  Sum_probs=100.6

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .|...+.||+|+||+||+|+. .+++.||||++....   ....+.+.+|++++++++|+|||++++++.+.+..++...
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            477788999999999999986 468999999996532   2345678999999999999999999999988776555433


Q ss_pred             ccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          752 HSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       752 ~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      +...          ..+.+.....++.+++.||+|||   +.+|+||||||+|||          |||+++.+
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~  151 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVH---KMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF  151 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCcHHHEEECCCCCEEEeeCcCCccc
Confidence            3222          23455556678889999999995   678999999999998          99997643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=1.5e-18  Score=192.85  Aligned_cols=126  Identities=25%  Similarity=0.278  Sum_probs=100.8

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+. .+|+.||||++....   ....+.+.+|++++++++|||||++++++.+.+..++..
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            3677889999999999999986 468999999986432   234567889999999999999999999998877665544


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      .+...          ..+.......++.+++.||+|||   +.+|+||||||+||+          |||+|+.
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlkp~NIll~~~~~~kl~DfGla~~  150 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIKPDNILIDRGGHIKLSDFGLSTG  150 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEEeecccccc
Confidence            33322          23445556678899999999995   678999999999998          9999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.77  E-value=1.2e-18  Score=187.78  Aligned_cols=150  Identities=25%  Similarity=0.384  Sum_probs=114.8

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++..... .....+.+|++++++++|||+|++.+++...+..++...
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            367888999999999999999865 689999999865432 223457889999999999999999999887765544322


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.          ....+.......++.+++.||+|||   +++|+||||||+||+          |||+++....... .
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~  159 (303)
T cd07869          84 YVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIH---QRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSH-T  159 (303)
T ss_pred             CCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCc-c
Confidence            21          1233556667789999999999995   678999999999998          9999875432221 1


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....||+.|+|||++
T Consensus       160 ~~~~~~~~~y~aPE~~  175 (303)
T cd07869         160 YSNEVVTLWYRPPDVL  175 (303)
T ss_pred             CCCCcccCCCCChHHH
Confidence            2234589999999963

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.77  E-value=1.3e-18  Score=188.71  Aligned_cols=150  Identities=27%  Similarity=0.456  Sum_probs=112.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCc----EEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGI----EVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .+|+..+.||+|+||.||+|++. +|+    .||||++.... ....++|.+|+.+++.++|+|+++++|+|......++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v   86 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   86 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceee
Confidence            45888899999999999999853 343    48999986542 3455789999999999999999999999977653332


Q ss_pred             -eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       ++..         .....+.+...+.++.++++||+|||   +++|+||||||+||+          |||+++......
T Consensus        87 ~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~  163 (316)
T cd05108          87 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADE  163 (316)
T ss_pred             eecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEecCCCcEEEccccccccccCCC
Confidence             1111         11224566777889999999999995   678999999999998          999998775433


Q ss_pred             cccc-ccceecccccccccC
Q 047196          809 SMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~-~~~~gt~~Y~APE~l  827 (827)
                      .... ....++..|||||++
T Consensus       164 ~~~~~~~~~~~~~y~apE~~  183 (316)
T cd05108         164 KEYHAEGGKVPIKWMALESI  183 (316)
T ss_pred             cceeccCCccceeecChHHh
Confidence            3211 112246789999964

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.77  E-value=1.4e-18  Score=189.30  Aligned_cols=146  Identities=24%  Similarity=0.316  Sum_probs=114.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .+|+..+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|++++++++|||||++++++..++..++..
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            56888899999999999999875 68999999986532   233467899999999999999999999998877655433


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+...          ..+.......++.+++.||+|||   +.+|+||||||+||+          |||+++......  
T Consensus        98 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~--  172 (329)
T PTZ00263         98 EFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT--  172 (329)
T ss_pred             cCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc--
Confidence            32221          23455556678899999999995   678999999999998          999998764322  


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ....||+.|+|||++
T Consensus       173 --~~~~gt~~y~aPE~~  187 (329)
T PTZ00263        173 --FTLCGTPEYLAPEVI  187 (329)
T ss_pred             --ceecCChhhcCHHHH
Confidence              123589999999974

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.77  E-value=3.3e-19  Score=182.34  Aligned_cols=148  Identities=24%  Similarity=0.367  Sum_probs=121.1

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .+|+..+.+|+|.||+|-+|.. ..|+.||||.++++.   .+..-+.++||+||+.+.||||+..+..+.+.+-.++..
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            4577778899999999999974 679999999997653   445567899999999999999999999998887665544


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          .+.+...+...+.+||..|+.|+   |+.+|+|||||.+|||          |||++-.+..+.- 
T Consensus       133 EYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYC---HknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kf-  208 (668)
T KOG0611|consen  133 EYASGGELYDYISERGSLSEREARHFFRQIVSAVHYC---HKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKF-  208 (668)
T ss_pred             EecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHH---hhccceecccchhheeecCCCCeeeeccchhhhhccccH-
Confidence            4432          24566777788999999999887   6889999999999999          9999988765543 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .++.||++-|.+||++
T Consensus       209 -LqTFCGSPLYASPEIv  224 (668)
T KOG0611|consen  209 -LQTFCGSPLYASPEIV  224 (668)
T ss_pred             -HHHhcCCcccCCcccc
Confidence             2457799999999974

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.77  E-value=1.2e-18  Score=185.81  Aligned_cols=128  Identities=24%  Similarity=0.351  Sum_probs=98.7

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ..++|+...+||+|+||.||.|+- .+|..+|+|++++..   ..+.+..+.|-.+|...+++.+|+++..+.+.++.++
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            446799999999999999999985 569999999997654   3346778899999999999999999999998887665


Q ss_pred             --eeeccCC--------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          749 --DCLHSTN--------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       749 --~~l~~~~--------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                        +++.+++        +.+.......++.++.-|++-+   |+.++|||||||+|+|          |||+++.
T Consensus       219 iMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~i---H~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~g  290 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESI---HQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTG  290 (550)
T ss_pred             EEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHH---HHcCcccccCChhheeecCCCCEeeccccccch
Confidence              4444332        2233333334444444555555   7899999999999998          9999754

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.77  E-value=1.1e-19  Score=193.11  Aligned_cols=140  Identities=25%  Similarity=0.441  Sum_probs=107.4

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~  752 (827)
                      +.+.+.+-+|.|+.|.||+|+++ ++.||||++++..       +.+|+-|++++|+||+.+.|+|.......+  ++..
T Consensus       124 e~IsELeWlGSGaQGAVF~Grl~-netVAVKKV~elk-------ETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa  195 (904)
T KOG4721|consen  124 EEISELEWLGSGAQGAVFLGRLH-NETVAVKKVRELK-------ETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCA  195 (904)
T ss_pred             HHhhhhhhhccCcccceeeeecc-CceehhHHHhhhh-------hhhHHHHHhccCcceeeEeeeecCCceeEEeeeccc
Confidence            33456688999999999999997 4799999875432       457899999999999999999988764433  3322


Q ss_pred             cC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          753 ST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       753 ~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      .+        .....-....+...+||.|+.|||   .+.|||||||+-|||          |||.++-+.+..  ...+
T Consensus       196 ~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH---~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~S--TkMS  270 (904)
T KOG4721|consen  196 QGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLH---LHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKS--TKMS  270 (904)
T ss_pred             cccHHHHHhccCccCHHHHHHHHHHhhhhhHHHH---HhhHhhhccCCCceEeeccceEEeccccchHhhhhhh--hhhh
Confidence            11        112223334578899999999995   556999999999999          999999876542  2355


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      .+||..|||||||
T Consensus       271 FaGTVaWMAPEvI  283 (904)
T KOG4721|consen  271 FAGTVAWMAPEVI  283 (904)
T ss_pred             hhhhHhhhCHHHh
Confidence            6799999999986

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.77  E-value=2.5e-18  Score=187.15  Aligned_cols=143  Identities=27%  Similarity=0.300  Sum_probs=110.4

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTN-  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~-  755 (827)
                      ++||+|+||.||+++.. +|+.||||++....   ......+.+|++++++++|||++++.+++...+..++...+... 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            46999999999999864 68999999986532   23456788999999999999999999998877755543333221 


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          756 ---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       756 ---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                               ..+.+.+...++.+++.||+|||   +.+|+||||||+||+          |||+++........ ....+
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~-~~~~~  156 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAAT-MKTFC  156 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccc-ccccc
Confidence                     24566777889999999999995   678999999999998          99998764322221 12245


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      ||+.|||||++
T Consensus       157 gt~~y~aPE~~  167 (328)
T cd05593         157 GTPEYLAPEVL  167 (328)
T ss_pred             CCcCccChhhh
Confidence            89999999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.77  E-value=1.6e-18  Score=189.53  Aligned_cols=146  Identities=25%  Similarity=0.316  Sum_probs=114.2

Q ss_pred             hcccccceEecCCceEEEEEEecC--CcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD--GIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~--g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|...+.||+|+||.||+|+.+.  +..||||++....   ....+.+.+|+++++.++|||||++++++.+++..++.
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence            568888999999999999998543  3689999986432   23346788999999999999999999999887765553


Q ss_pred             eeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+...          ..+.+.....++.+++.||+|||   +.+|+||||||+|||          |||+++...... 
T Consensus       110 ~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~-  185 (340)
T PTZ00426        110 LEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRT-  185 (340)
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCCc-
Confidence            333221          23556667789999999999995   678999999999998          999998654221 


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                         ....||+.|||||++
T Consensus       186 ---~~~~gt~~y~aPE~~  200 (340)
T PTZ00426        186 ---YTLCGTPEYIAPEIL  200 (340)
T ss_pred             ---ceecCChhhcCHHHH
Confidence               224589999999974

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=1.1e-18  Score=186.89  Aligned_cols=145  Identities=24%  Similarity=0.313  Sum_probs=113.9

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|++++++++||||+++++++.+....++...
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   81 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence            5778899999999999999865 68999999986432   2345678899999999999999999988877765544333


Q ss_pred             ccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +...          ..+.+.....++.++++||+|||   +++|+||||||+||+          |||+++......   
T Consensus        82 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~---  155 (291)
T cd05612          82 YVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRT---  155 (291)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCc---
Confidence            2221          23556667789999999999995   678999999999998          999998764321   


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                       ...+||+.|+|||++
T Consensus       156 -~~~~gt~~y~aPE~~  170 (291)
T cd05612         156 -WTLCGTPEYLAPEVI  170 (291)
T ss_pred             -ccccCChhhcCHHHH
Confidence             123589999999963

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.77  E-value=2.9e-18  Score=186.38  Aligned_cols=143  Identities=26%  Similarity=0.296  Sum_probs=110.1

Q ss_pred             ceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCC-
Q 047196          681 NLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTN-  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~-  755 (827)
                      ++||+|+||.||+++. .+|..||+|++....   ......+.+|++++++++|||++++.+++...+..++...+... 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4699999999999986 468999999986532   23445678899999999999999999998877655543333221 


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          756 ---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       756 ---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                               ..+.+.....++.++++||+|||   +.+|+||||||+||+          |||+++........ .....
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~-~~~~~  156 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT-MKTFC  156 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCc-ccccc
Confidence                     23566777889999999999995   678999999999998          99998754322221 12245


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      ||+.|||||++
T Consensus       157 gt~~y~aPE~~  167 (323)
T cd05595         157 GTPEYLAPEVL  167 (323)
T ss_pred             CCcCcCCcccc
Confidence            89999999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.77  E-value=1.9e-18  Score=188.46  Aligned_cols=150  Identities=21%  Similarity=0.260  Sum_probs=115.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+++.. +++.||||++....   ....+.+.+|+.+++.++|++|+++.+++.+++..++..
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36788899999999999999865 68899999986432   223456888999999999999999999998877655533


Q ss_pred             eccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          751 LHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       751 l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      .+..           ...+.+.....++.+++.||+|+|   +++|+||||||+||+          |||+++.......
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  157 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT  157 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCc
Confidence            3322           223455666778899999999995   678999999999998          9999987654433


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      .......||++|||||++
T Consensus       158 ~~~~~~~gt~~y~aPE~~  175 (331)
T cd05624         158 VQSSVAVGTPDYISPEIL  175 (331)
T ss_pred             eeeccccCCcccCCHHHH
Confidence            222234589999999963

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.77  E-value=1.7e-18  Score=184.91  Aligned_cols=149  Identities=24%  Similarity=0.324  Sum_probs=115.6

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|+.+ +++.||||++....  ....+.+.+|++++++++|+|||++.+++...+..++...+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY   81 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence            5778899999999999999875 58899999986532  23346788999999999999999999998777655543332


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+.+.....++.+++.||+|||   +++|+||||||+||+          |||+++..........
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  158 (287)
T cd07848          82 VEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANY  158 (287)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccc
Confidence            22          123566677889999999999995   678999999999998          9999987643322222


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||++|+|||++
T Consensus       159 ~~~~~~~~y~aPE~~  173 (287)
T cd07848         159 TEYVATRWYRSPELL  173 (287)
T ss_pred             cccccccccCCcHHH
Confidence            234589999999974

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=2.4e-18  Score=187.94  Aligned_cols=145  Identities=23%  Similarity=0.351  Sum_probs=115.0

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+++++.++|||||++++++...+..++...
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            5788899999999999999875 58999999996542   2234578899999999999999999999988776655433


Q ss_pred             ccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +...          ..+.+.....++.+++.|++|||   +.+|+||||||+||+          |||+++.....    
T Consensus        82 ~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~----  154 (333)
T cd05600          82 YVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALH---ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTY----  154 (333)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEEEeCcCCcccccc----
Confidence            3222          23556667789999999999995   678999999999998          99998765431    


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||+.|+|||++
T Consensus       155 ~~~~~gt~~y~aPE~~  170 (333)
T cd05600         155 ANSVVGSPDYMAPEVL  170 (333)
T ss_pred             cCCcccCccccChhHh
Confidence            1234589999999974

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=2.4e-18  Score=186.05  Aligned_cols=141  Identities=28%  Similarity=0.287  Sum_probs=108.9

Q ss_pred             EecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC----
Q 047196          683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST----  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~----  754 (827)
                      ||+|+||.||+|+.. +++.||||++....   ......+.+|++++++++|||||++.+++..++..++...+..    
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            699999999999865 58899999986432   2344678899999999999999999999887765554332221    


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccceec
Q 047196          755 ------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVT  818 (827)
Q Consensus       755 ------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt  818 (827)
                            ...+++.....++.++++||+|||   +++|+||||||+||+          |||+++........ ....+||
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt  156 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALENLH---KFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDK-TNTFCGT  156 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCc-cccccCC
Confidence                  234567777889999999999995   678999999999998          99999864332221 2234589


Q ss_pred             ccccccccC
Q 047196          819 IGYMAPGLL  827 (827)
Q Consensus       819 ~~Y~APE~l  827 (827)
                      ++|||||++
T Consensus       157 ~~y~aPE~~  165 (312)
T cd05585         157 PEYLAPELL  165 (312)
T ss_pred             cccCCHHHH
Confidence            999999974

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.76  E-value=2.7e-18  Score=187.31  Aligned_cols=149  Identities=23%  Similarity=0.295  Sum_probs=115.8

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|...+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+++++.++|+|++++.+++.+.+..++...
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVME   81 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEEC
Confidence            5788899999999999999864 68999999997542   2245678899999999999999999998887765554333


Q ss_pred             ccCC-----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          752 HSTN-----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       752 ~~~~-----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +...           ..+.+.....++.++++||.|||   +.+|+||||||+||+          |||+++.+......
T Consensus        82 ~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~  158 (330)
T cd05601          82 YQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMV  158 (330)
T ss_pred             CCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCce
Confidence            3221           34556666778899999999995   678999999999998          99999876544332


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      ......||+.|+|||++
T Consensus       159 ~~~~~~gt~~y~aPE~~  175 (330)
T cd05601         159 NSKLPVGTPDYIAPEVL  175 (330)
T ss_pred             eeecccCCccccCHHHh
Confidence            22234589999999974

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.76  E-value=1.3e-18  Score=195.97  Aligned_cols=145  Identities=21%  Similarity=0.274  Sum_probs=112.8

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ...|...+.||+|+||.||+|+.. +++.||||...      ...+.+|++++++++|+|||++++++......++...+
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~  241 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPK  241 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            346888899999999999999865 58899999642      22457899999999999999999998776654442211


Q ss_pred             ----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-c
Q 047196          753 ----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-I  811 (827)
Q Consensus       753 ----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-~  811 (827)
                                .....+++.+...|+.|+++||+|||   +.+|+||||||+|||          |||+++........ .
T Consensus       242 ~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~  318 (461)
T PHA03211        242 YRSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPF  318 (461)
T ss_pred             cCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCCHHHEEECCCCCEEEcccCCceeccccccccc
Confidence                      11234778888999999999999995   678999999999998          99999876443221 1


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....||+.|||||++
T Consensus       319 ~~~~~GT~~Y~APE~~  334 (461)
T PHA03211        319 HYGIAGTVDTNAPEVL  334 (461)
T ss_pred             ccccCCCcCCcCHHHH
Confidence            1223589999999974

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.76  E-value=2.2e-18  Score=191.19  Aligned_cols=149  Identities=27%  Similarity=0.380  Sum_probs=114.4

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-----cee
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-----FKA  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-----~~~  747 (827)
                      +|+..+.||+|+||.||+|+. .+|+.||||++...  .....+++.+|+++++.++|+||+++++++..++     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            467789999999999999986 47899999998643  2334567889999999999999999999887654     222


Q ss_pred             --eeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 --LDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 --l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                        ++++..       ....+.+.....++.++++||+|||   +.+|+||||||+||+          |||+|+......
T Consensus        81 lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~  157 (372)
T cd07853          81 VVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDE  157 (372)
T ss_pred             EEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHHEEECCCCCEEeccccceeecccCc
Confidence              222221       1234677778889999999999995   678999999999998          999998764333


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ....+..++|+.|+|||++
T Consensus       158 ~~~~~~~~~~~~y~aPE~~  176 (372)
T cd07853         158 SKHMTQEVVTQYYRAPEIL  176 (372)
T ss_pred             cccCCCCCcCCCcCCHHHH
Confidence            2222334579999999963

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.76  E-value=2.5e-18  Score=187.65  Aligned_cols=150  Identities=23%  Similarity=0.266  Sum_probs=114.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..++||+|+||.||+++.+ +++.||+|++.+..   ....+.|.+|+.++..++|++++++.+++.+++..++..
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            36788899999999999999875 57889999986432   223345889999999999999999999988776555433


Q ss_pred             eccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          751 LHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       751 l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      .+..           ...+.+.....++.+++.|++|||   +++|+||||||+||+          |||+++.+.....
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~  157 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT  157 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEeecchheecccCCc
Confidence            3221           123455566778999999999995   578999999999998          9999976644333


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ......+||++|||||++
T Consensus       158 ~~~~~~~gt~~y~aPE~~  175 (332)
T cd05623         158 VQSSVAVGTPDYISPEIL  175 (332)
T ss_pred             ceecccccCccccCHHHH
Confidence            222234599999999974

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.76  E-value=3.4e-18  Score=190.44  Aligned_cols=125  Identities=22%  Similarity=0.260  Sum_probs=99.2

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .|+..++||+|+||.||+|+. .+++.||||++....   ....+.+.+|++++++++|+|||++++++.+.+..++...
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            477889999999999999986 468899999986532   2345678999999999999999999999988776554333


Q ss_pred             ccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          752 HSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       752 ~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      +...          ..+.......++.+++.|++|||   +.+|+||||||+|||          |||+|+.
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~  150 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEeECCCCcc
Confidence            3222          22344455678889999999995   678999999999998          9999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.76  E-value=2.6e-18  Score=194.21  Aligned_cols=145  Identities=30%  Similarity=0.420  Sum_probs=109.3

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--------  744 (827)
                      .++|...++||+|+||.||+|+. .+++.||||++....    ....+|+.++++++|+|+|++.+++....        
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            35788899999999999999986 468999999885432    23457999999999999999988764321        


Q ss_pred             ce--eeeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecc
Q 047196          745 FK--ALDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGI  800 (827)
Q Consensus       745 ~~--~l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGl  800 (827)
                      +.  +++++..           ....+.+.....++.|+++||+|||   +.+|+||||||+|||           |||+
T Consensus       141 ~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH---~~~IiHrDLKp~NILl~~~~~~vkL~DFGl  217 (440)
T PTZ00036        141 FLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH---SKFICHRDLKPQNLLIDPNTHTLKLCDFGS  217 (440)
T ss_pred             EEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCcCHHHEEEcCCCCceeeecccc
Confidence            11  2232221           1234566677789999999999995   678999999999998           9999


Q ss_pred             cccccCCCccccccceecccccccccC
Q 047196          801 GRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |+.+......  ...+||+.|||||++
T Consensus       218 a~~~~~~~~~--~~~~~t~~y~aPE~~  242 (440)
T PTZ00036        218 AKNLLAGQRS--VSYICSRFYRAPELM  242 (440)
T ss_pred             chhccCCCCc--ccCCCCcCccCHHHh
Confidence            9876543221  234589999999963

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.76  E-value=4.4e-18  Score=194.54  Aligned_cols=149  Identities=21%  Similarity=0.263  Sum_probs=115.6

Q ss_pred             cccccceEecCCceEEEEEEec-C-CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-D-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~-g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .|...+.||+|+||.||+|... + ++.||+|.+..........+.+|++++++++|||||++++++..++..++...+.
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            3788899999999999999753 4 6789999876555555567889999999999999999999998877665544333


Q ss_pred             CCC--------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          754 TNC--------------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       754 ~~~--------------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+              .+.+.....++.+++.||.|+|   +++|+||||||+|||          |||+++.+.....
T Consensus       148 ~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~  224 (478)
T PTZ00267        148 SGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVS  224 (478)
T ss_pred             CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccc
Confidence            222              2455566778899999999995   678999999999998          9999987654322


Q ss_pred             c-ccccceecccccccccC
Q 047196          810 M-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~-~~~~~~gt~~Y~APE~l  827 (827)
                      . .....+||++|||||++
T Consensus       225 ~~~~~~~~gt~~y~aPE~~  243 (478)
T PTZ00267        225 LDVASSFCGTPYYLAPELW  243 (478)
T ss_pred             cccccccCCCccccCHhHh
Confidence            1 12234589999999974

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.76  E-value=4.7e-18  Score=185.55  Aligned_cols=149  Identities=23%  Similarity=0.288  Sum_probs=112.2

Q ss_pred             cccccceEecCCceEEEEEEe----cCCcEEEEEEEcccc----hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCce
Q 047196          676 KFSKENLIGVGSFGSVYKGRL----HDGIEVAIKVFHQNC----AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFK  746 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~  746 (827)
                      +|+..+.||+|+||.||+++.    .+|+.||+|++....    ....+.+.+|++++++++ |++++++.+++..++..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            367788999999999999975    257899999986432    223456889999999995 89999999888776654


Q ss_pred             eeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          747 ALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       747 ~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      ++...+..          ...+.+.....++.++++||+|||   +.+|+||||||+|||          |||+++....
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~  157 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLS  157 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHeEECCCCCEEEeeCcCCccccc
Confidence            44322221          123566667789999999999995   678999999999998          9999986543


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .........+||+.|||||++
T Consensus       158 ~~~~~~~~~~gt~~y~aPE~~  178 (332)
T cd05614         158 EEKERTYSFCGTIEYMAPEII  178 (332)
T ss_pred             cCCCccccccCCccccCHHHh
Confidence            322222234589999999974

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.76  E-value=2.9e-18  Score=190.09  Aligned_cols=150  Identities=23%  Similarity=0.422  Sum_probs=111.5

Q ss_pred             hcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~  746 (827)
                      ++|+..+.||+|+||.||+|+.      .++..||||+++... ....+.+.+|+++++.+ +|||||+++++|...+..
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~  114 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPT  114 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcc
Confidence            4688889999999999999963      235689999986432 33456789999999999 899999999999776544


Q ss_pred             eeeeecc-------------------------------------------------------------------------
Q 047196          747 ALDCLHS-------------------------------------------------------------------------  753 (827)
Q Consensus       747 ~l~~l~~-------------------------------------------------------------------------  753 (827)
                      ++...+.                                                                         
T Consensus       115 ~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (375)
T cd05104         115 LVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSY  194 (375)
T ss_pred             eeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccccccee
Confidence            3321110                                                                         


Q ss_pred             ------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 ------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                                  ....+++.....++.++++|++|||   +++|+||||||+||+          |||+++.........
T Consensus       195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~  271 (375)
T cd05104         195 IDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYV  271 (375)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCCcEEEecCccceeccCccccc
Confidence                        0113566777889999999999996   578999999999998          999998764432211


Q ss_pred             -cccceecccccccccC
Q 047196          812 -QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 -~~~~~gt~~Y~APE~l  827 (827)
                       .....++..|||||++
T Consensus       272 ~~~~~~~~~~y~aPE~~  288 (375)
T cd05104         272 VKGNARLPVKWMAPESI  288 (375)
T ss_pred             ccCCCCCCcceeChhHh
Confidence             1112256789999974

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.76  E-value=3e-18  Score=187.55  Aligned_cols=149  Identities=28%  Similarity=0.416  Sum_probs=111.6

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-------c
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-------F  745 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-------~  745 (827)
                      +|+..++||+|+||.||+|+.. +|+.||||++...  ......++.+|++++++++|||||++.+++....       +
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            3677889999999999999864 6899999998642  2223457889999999999999999998875432       1


Q ss_pred             eeeeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          746 KALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       746 ~~l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ..++++..       ....+.+.....++.|+++||+|||   +.+|+||||||+||+          |||+++....+.
T Consensus        81 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~  157 (338)
T cd07859          81 VVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVAFNDT  157 (338)
T ss_pred             EEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEccCcccccccccc
Confidence            22232211       1224667777889999999999995   678999999999998          999998654322


Q ss_pred             cc--ccccceecccccccccC
Q 047196          809 SM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ..  .....+||+.|+|||++
T Consensus       158 ~~~~~~~~~~~t~~y~aPE~~  178 (338)
T cd07859         158 PTAIFWTDYVATRWYRAPELC  178 (338)
T ss_pred             CccccccCCCCCCCcCCHHHH
Confidence            21  11234589999999963

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.76  E-value=3.9e-18  Score=189.54  Aligned_cols=125  Identities=23%  Similarity=0.248  Sum_probs=98.9

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|+..+.||+|+||.||+|+.. +++.||||++....   ....+.+.+|++++++++|+|||++++.+.+++..++...
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            5778899999999999999864 68999999986432   1234568899999999999999999999987776555333


Q ss_pred             ccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          752 HSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       752 ~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      +...          ..+.......++.+++.||+|||   +.+|+||||||+||+          |||+|+.
T Consensus        82 ~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~  150 (376)
T cd05598          82 YIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (376)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHEEECCCCCEEEEeCCCCcc
Confidence            3222          22344555668899999999995   678999999999998          9999853

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.1e-19  Score=194.58  Aligned_cols=147  Identities=27%  Similarity=0.345  Sum_probs=112.9

Q ss_pred             ccccceEecCCceEEEEEEecC-CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeecc
Q 047196          677 FSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLHS  753 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~~  753 (827)
                      |.....+|.|+||+||||..++ +...|.|++........+.|.-||+||+.++||+||++++.|+-++..++  ++.-+
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~G  113 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGG  113 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCC
Confidence            3444668999999999998654 56678898877777778899999999999999999999988766554333  33322


Q ss_pred             C---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 T---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      +         +..+...+..-|+.+++.||.||   |+..|||||||+.|||          |||++........ ...+
T Consensus       114 GAVDaimlEL~r~LtE~QIqvvc~q~ldALn~L---Hs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~q-kRDs  189 (1187)
T KOG0579|consen  114 GAVDAIMLELGRVLTEDQIQVVCYQVLDALNWL---HSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQ-KRDS  189 (1187)
T ss_pred             chHhHHHHHhccccchHHHHHHHHHHHHHHHHH---hhcchhhhhccccceEEEecCcEeeecccccccchhHHh-hhcc
Confidence            1         22355666777999999999999   5788999999999998          9998765432221 1234


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      .+|||+||||||.
T Consensus       190 FIGTPYWMAPEVv  202 (1187)
T KOG0579|consen  190 FIGTPYWMAPEVV  202 (1187)
T ss_pred             ccCCcccccchhe
Confidence            6799999999984

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.75  E-value=3.9e-18  Score=188.90  Aligned_cols=150  Identities=22%  Similarity=0.438  Sum_probs=110.8

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~  746 (827)
                      ++|+..+.||+|+||.||+|+..      ++..||||++.... ....+.+.+|+++++++ +|+|||+++++|......
T Consensus        38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~  117 (374)
T cd05106          38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPV  117 (374)
T ss_pred             HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCe
Confidence            46888899999999999999742      24579999996542 33456788999999999 899999999998776544


Q ss_pred             eeeeeccC------------------------------------------------------------------------
Q 047196          747 ALDCLHST------------------------------------------------------------------------  754 (827)
Q Consensus       747 ~l~~l~~~------------------------------------------------------------------------  754 (827)
                      ++...+..                                                                        
T Consensus       118 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (374)
T cd05106         118 LVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDS  197 (374)
T ss_pred             EEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccc
Confidence            33111100                                                                        


Q ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc-cccc
Q 047196          755 --------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI-QTET  815 (827)
Q Consensus       755 --------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~-~~~~  815 (827)
                              ...+++.+...++.++++||+|||   +++|+||||||+||+          |||+++......... ....
T Consensus       198 ~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~  274 (374)
T cd05106         198 KDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNA  274 (374)
T ss_pred             cchhccCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCC
Confidence                    012456667889999999999995   678999999999998          999998664332211 1112


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .++..|||||++
T Consensus       275 ~~~~~y~aPE~~  286 (374)
T cd05106         275 RLPVKWMAPESI  286 (374)
T ss_pred             CCccceeCHHHh
Confidence            256789999964

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=3.6e-18  Score=187.24  Aligned_cols=150  Identities=23%  Similarity=0.306  Sum_probs=116.6

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCce--
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFK--  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~--  746 (827)
                      .++|....++|+|+||+|+.++.+ +++.+|||+++++.   ....+....|.+|+.-. +||.++.++.++...+..  
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~f  446 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFF  446 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEE
Confidence            367888999999999999999975 57899999998754   23345667787777766 599999999888766533  


Q ss_pred             eeeeeccC-------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          747 ALDCLHST-------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       747 ~l~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      +|++...+       ...++..+..-+|..|+-||+||   |+++||+||||.+|||          |||++|-....+.
T Consensus       447 vmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fL---H~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~  523 (694)
T KOG0694|consen  447 VMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFL---HENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGD  523 (694)
T ss_pred             EEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHH---HhcCceeeecchhheEEcccCcEEecccccccccCCCCC
Confidence            34433222       24567777778999999999999   5889999999999998          9999997653333


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      .+ .+.+|||.|||||++
T Consensus       524 ~T-sTfCGTpey~aPEil  540 (694)
T KOG0694|consen  524 RT-STFCGTPEFLAPEVL  540 (694)
T ss_pred             cc-ccccCChhhcChhhh
Confidence            22 346799999999985

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.75  E-value=3.2e-18  Score=188.36  Aligned_cols=149  Identities=25%  Similarity=0.334  Sum_probs=116.1

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|...+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+++++.++|+|++++++++.+.+..++...
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVME   81 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEc
Confidence            5788899999999999999865 68999999986532   1345678999999999999999999999887775554332


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC---
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR---  808 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~---  808 (827)
                      +..          ...+.......++.++++||+|||   +++|+||||||+||+          |||+++......   
T Consensus        82 ~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  158 (350)
T cd05573          82 YMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVH---KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDRE  158 (350)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccc
Confidence            221          134566677789999999999996   588999999999998          999998764432   


Q ss_pred             -------------------------ccccccceecccccccccC
Q 047196          809 -------------------------SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 -------------------------~~~~~~~~gt~~Y~APE~l  827 (827)
                                               ........||+.|+|||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  202 (350)
T cd05573         159 YYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVL  202 (350)
T ss_pred             ccccccccccccccccccccccccccccccccccCccccCHHHH
Confidence                                     0111234589999999974

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.75  E-value=8.8e-18  Score=182.82  Aligned_cols=144  Identities=25%  Similarity=0.270  Sum_probs=109.8

Q ss_pred             ceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC--
Q 047196          681 NLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST--  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~--  754 (827)
                      +.||+|+||.||+++. .+|+.||||++....   .....++.+|+++++.++||||+++.+++...+..++...+..  
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999985 468999999986532   2334567889999999999999999998877765544333222  


Q ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          755 --------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       755 --------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                              ...+.+.....++.+++.||+|||.  ..+|+||||||+||+          |||+++........ .....
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~--~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~-~~~~~  157 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT-MKTFC  157 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcc-ccccc
Confidence                    2245677778899999999999962  368999999999998          99998754322221 12245


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      ||+.|||||++
T Consensus       158 gt~~y~aPE~~  168 (325)
T cd05594         158 GTPEYLAPEVL  168 (325)
T ss_pred             CCcccCCHHHH
Confidence            89999999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.75  E-value=1.2e-17  Score=182.25  Aligned_cols=148  Identities=22%  Similarity=0.283  Sum_probs=115.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..+.||+|+||.||+++.. +|..||+|.+.... ....+++.+|++++++++|||+|++++++...+..++...+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH   84 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeec
Confidence            57888899999999999999865 68899999987542 33456799999999999999999999998877655543333


Q ss_pred             cCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 STN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ...          ..+.+.....++.+++.|+.|||.  ..+|+||||||+||+          |||+++.......   
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~--~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---  159 (331)
T cd06649          85 MDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA---  159 (331)
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh--cCCEEcCCCChhhEEEcCCCcEEEccCccccccccccc---
Confidence            222          234555667899999999999974  346999999999998          9999876543221   


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||+.|+|||++
T Consensus       160 ~~~~g~~~y~aPE~~  174 (331)
T cd06649         160 NSFVGTRSYMSPERL  174 (331)
T ss_pred             ccCCCCcCcCCHhHh
Confidence            224589999999974

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.75  E-value=6.3e-18  Score=186.67  Aligned_cols=126  Identities=23%  Similarity=0.276  Sum_probs=101.1

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|+..+.||+|+||.||+|+.. +++.||||++....   ....+.+.+|++++.+++|++++++++++...+..++...
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E   81 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIME   81 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEe
Confidence            5778899999999999999865 68999999986432   2234678899999999999999999999887775544332


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      +..          ...+.......++.+++.||+|||   +++|+||||||+||+          |||+++.+
T Consensus        82 ~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~  151 (360)
T cd05627          82 FLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGL  151 (360)
T ss_pred             CCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEeeccCCccc
Confidence            222          223556667789999999999995   678999999999998          99998755

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.75  E-value=6.4e-18  Score=198.71  Aligned_cols=150  Identities=27%  Similarity=0.392  Sum_probs=113.4

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..++||+|+||.||+|+.. +|+.||||++....   ....++|.+|++++++++|||+|++++++.+.+..++..
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            46888899999999999999864 58999999986532   234567999999999999999999999998776554432


Q ss_pred             eccCCC---------------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eec
Q 047196          751 LHSTNC---------------------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFG  799 (827)
Q Consensus       751 l~~~~~---------------------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFG  799 (827)
                      .+..++                     ..++...+.++.++++||+|||   +.+|+||||||+||+          |||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GIIHRDLKPeNILLd~dg~vKLiDFG  158 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWG  158 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCccccCCchheEEEcCCCCEEEEecC
Confidence            222111                     2234456789999999999996   578999999999998          999


Q ss_pred             ccccccCCCc-----------------cccccceecccccccccC
Q 047196          800 IGRLLTGDRS-----------------MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       800 la~~~~~~~~-----------------~~~~~~~gt~~Y~APE~l  827 (827)
                      +|+.......                 ......+||++|||||++
T Consensus       159 LAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l  203 (932)
T PRK13184        159 AAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERL  203 (932)
T ss_pred             cceecccccccccccccccccccccccccCCCCCCCCCCCCHHHh
Confidence            9987621110                 001123589999999963

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.75  E-value=3.5e-18  Score=193.33  Aligned_cols=151  Identities=28%  Similarity=0.431  Sum_probs=114.5

Q ss_pred             cccccceEecCCceEEEEEEecCC-cEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEee-eecC---C--cee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHDG-IEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISS-CSNE---D--FKA  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~g-~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~-~~~~---~--~~~  747 (827)
                      +.+.+++|.+|||+.||.|+...+ ..||+|++-...++..+.+.+||++|++++ |+|||.+++. ....   .  +.+
T Consensus        38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Ev  117 (738)
T KOG1989|consen   38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEV  117 (738)
T ss_pred             EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEE
Confidence            456678999999999999997654 999999987777888899999999999998 9999999994 2221   1  222


Q ss_pred             ---eeeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          748 ---LDCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       748 ---l~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                         |++...          ....++..+.++|+.++++|+++||+ .+++|||||||.+|||          |||-|.-.
T Consensus       118 llLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~-~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~  196 (738)
T KOG1989|consen  118 LLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHY-LKPPIIHRDLKIENVLLSADGNYKLCDFGSATTK  196 (738)
T ss_pred             EeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc-CCCccchhhhhhhheEEcCCCCEEeCcccccccc
Confidence               233321          12346778889999999999999997 6899999999999999          99987543


Q ss_pred             cCCC-ccc-----cc--cceecccccccccC
Q 047196          805 TGDR-SMI-----QT--ETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~-~~~-----~~--~~~gt~~Y~APE~l  827 (827)
                      .... ...     ..  ...-|+-|+|||+|
T Consensus       197 ~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMI  227 (738)
T KOG1989|consen  197 ILSPTSAQEVNYVEEEIEKYTTPQYRSPEMI  227 (738)
T ss_pred             cCCCccHHHHHHHHHHHHhhCCccccChHHH
Confidence            2211 110     00  11248999999986

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.75  E-value=6.6e-18  Score=183.18  Aligned_cols=143  Identities=25%  Similarity=0.354  Sum_probs=105.1

Q ss_pred             cceEecCCceEEEEEEec---CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc--ee--eeeec
Q 047196          680 ENLIGVGSFGSVYKGRLH---DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF--KA--LDCLH  752 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~--~~--l~~l~  752 (827)
                      ..+||+|+||.||+|+..   +++.||||++....  ....+.+|++++++++|||||++++.+.....  .+  +++..
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            468999999999999864   46789999986532  23456789999999999999999998754321  11  12211


Q ss_pred             c----------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eecccc
Q 047196          753 S----------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGR  802 (827)
Q Consensus       753 ~----------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~  802 (827)
                      .                ....+.......++.|++.||+|||   +.+|+||||||+|||              |||+|+
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07868          84 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEeecCcee
Confidence            0                0113556667789999999999995   678999999999987              999998


Q ss_pred             cccCCCcc--ccccceecccccccccC
Q 047196          803 LLTGDRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ........  ......||++|||||++
T Consensus       161 ~~~~~~~~~~~~~~~~~t~~y~aPE~~  187 (317)
T cd07868         161 LFNSPLKPLADLDPVVVTFWYRAPELL  187 (317)
T ss_pred             ccCCCCccccccCCccccccccCCHHH
Confidence            76433221  11234589999999974

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.75  E-value=7.1e-18  Score=183.34  Aligned_cols=143  Identities=25%  Similarity=0.331  Sum_probs=107.5

Q ss_pred             ceEecCCceEEEEEEe----cCCcEEEEEEEcccc----hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          681 NLIGVGSFGSVYKGRL----HDGIEVAIKVFHQNC----AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +.||+|+||.||+++.    .+++.||||++....    ......+.+|++++++++||||+++++++..++..++...+
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999975    257899999986432    12345678999999999999999999998877655443333


Q ss_pred             cCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 STN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ...          ..+.......++.++++||+|||   +.+|+||||||+||+          |||+++........ .
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~  157 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTV-T  157 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCc-c
Confidence            222          23445556678899999999995   678999999999998          99998754332221 1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||++|+|||++
T Consensus       158 ~~~~gt~~y~aPE~~  172 (323)
T cd05584         158 HTFCGTIEYMAPEIL  172 (323)
T ss_pred             cccCCCccccChhhc
Confidence            224589999999974

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.75  E-value=7.6e-18  Score=186.01  Aligned_cols=150  Identities=24%  Similarity=0.365  Sum_probs=113.6

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-----
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-----  744 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-----  744 (827)
                      ..++|...+.||+|+||.||+|+.. +|+.||||++...  ......++.+|+.+++.++||||+++++++....     
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            4578999999999999999999864 6899999998643  2234567889999999999999999999875432     


Q ss_pred             ---ceeeeeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 ---FKALDCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 ---~~~l~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                         +..++++...     ...++......++.|+++||+|||   +.+|+||||||+||+          |||+++....
T Consensus        99 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~  175 (359)
T cd07876          99 QDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACT  175 (359)
T ss_pred             ceeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEecCCCcccccc
Confidence               1222333211     123455666779999999999995   678999999999998          9999976533


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...  .....||+.|+|||++
T Consensus       176 ~~~--~~~~~~t~~y~aPE~~  194 (359)
T cd07876         176 NFM--MTPYVVTRYYRAPEVI  194 (359)
T ss_pred             Ccc--CCCCcccCCCCCchhc
Confidence            221  2234589999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.75  E-value=8.5e-18  Score=179.78  Aligned_cols=147  Identities=29%  Similarity=0.451  Sum_probs=107.8

Q ss_pred             cccccceEecCCceEEEEEEe-c-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhc---CCCCceEEEeeeecC-----
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-H-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNI---RHRNHVKRISSCSNE-----  743 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l---~H~niv~~~~~~~~~-----  743 (827)
                      +|+..+.||+|+||.||+|+. . +|+.||||++....  ......+.+|+++++++   +||||++++++|...     
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            577889999999999999986 3 46889999986432  22234567788877766   699999999988531     


Q ss_pred             Cceee--eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          744 DFKAL--DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       744 ~~~~l--~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                      ...++  ++...         ....+.+.....++.+++.||+|||   +.+|+||||||+||+          |||+++
T Consensus        82 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T cd07862          82 TKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLAR  158 (290)
T ss_pred             CcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEcCCCCEEEccccceE
Confidence            11222  22211         1123667788899999999999995   678999999999998          999998


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ......  ......||+.|+|||++
T Consensus       159 ~~~~~~--~~~~~~~~~~y~aPE~~  181 (290)
T cd07862         159 IYSFQM--ALTSVVVTLWYRAPEVL  181 (290)
T ss_pred             eccCCc--ccccccccccccChHHH
Confidence            764332  12234589999999963

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.74  E-value=6.1e-18  Score=178.51  Aligned_cols=150  Identities=19%  Similarity=0.278  Sum_probs=112.3

Q ss_pred             hcccccceEecCCceEEEEEEec----CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .+|+..+.||+|+||.||+|.++    .+..||+|+++... ....+.|.+|++++++++|||+|++.+++...+..++.
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            46778899999999999999753    35789999987643 33456799999999999999999999998876655443


Q ss_pred             eeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          750 CLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       750 ~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ..+..           ...+.+.+...++.+++.|++|||   +++|+||||||+||+          |||.+.......
T Consensus        85 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~  161 (266)
T cd05064          85 TEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEA  161 (266)
T ss_pred             EEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCcccccccccc
Confidence            32221           235678888999999999999995   678999999999998          888765432221


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ........++..|+|||++
T Consensus       162 ~~~~~~~~~~~~y~aPE~~  180 (266)
T cd05064         162 IYTTMSGKSPVLWAAPEAI  180 (266)
T ss_pred             hhcccCCCCceeecCHHHH
Confidence            1111112256789999963

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.74  E-value=5.8e-18  Score=182.87  Aligned_cols=149  Identities=25%  Similarity=0.371  Sum_probs=114.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|...+.||+|+||.||+|+.+ +++.||||+++... ......+.+|++++++++|+|++++++++..++..++...+
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            46888899999999999999865 67899999986432 22334678899999999999999999999877655443322


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+.+.....++.++++||+|||   +++|+||||||+||+          |||+++........ .
T Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-~  161 (309)
T cd07872          86 LDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKT-Y  161 (309)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECccccceecCCCccc-c
Confidence            21          223566677789999999999995   678999999999998          99998765332221 1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....+|+.|+|||++
T Consensus       162 ~~~~~~~~y~aPE~~  176 (309)
T cd07872         162 SNEVVTLWYRPPDVL  176 (309)
T ss_pred             ccccccccccCCHHH
Confidence            224579999999963

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.74  E-value=6.9e-18  Score=176.95  Aligned_cols=149  Identities=25%  Similarity=0.400  Sum_probs=113.9

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS-  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~-  753 (827)
                      .+|+..+.||+|+||.||+|+++++..||+|.+.... ...+.|.+|++++++++|||++++++++...+..++...+. 
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~   82 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFME   82 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCC
Confidence            4577788999999999999998888899999876432 23457899999999999999999999987766544422221 


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 ----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                ....+++.....++.+++.|++|||   +++|+||||||+||+          |||+++...........
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~  159 (256)
T cd05114          83 NGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSS  159 (256)
T ss_pred             CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccC
Confidence                      1234677788899999999999995   678999999999998          89988765433222112


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||++
T Consensus       160 ~~~~~~~y~aPE~~  173 (256)
T cd05114         160 GAKFPVKWSPPEVF  173 (256)
T ss_pred             CCCCchhhCChhhc
Confidence            22356789999974

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.74  E-value=1.2e-17  Score=180.01  Aligned_cols=149  Identities=19%  Similarity=0.262  Sum_probs=107.5

Q ss_pred             HhhcccccceEecCCceEEEEEEec--CCcEEEEEEEccc-----chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH--DGIEVAIKVFHQN-----CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~--~g~~vAvK~l~~~-----~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      ..++|...+.||+|+||+||+|+.+  +++.||||++...     .....+.|.+|++++++++|+|+|+.+..+ ...+
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~-~~~~   94 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT-GKDG   94 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc-CCcE
Confidence            3467999999999999999999864  5778899987532     122356799999999999999999644332 3344


Q ss_pred             eeeeeeccCCCCCCHH---HHHHHHHHHHHHHHHHHhcCCCCeEEccC-CCccee----------eecccccccCCCccc
Q 047196          746 KALDCLHSTNCSLNIF---DKLNIMIDVASALEYLHFSHSTPVIHCDL-KPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       746 ~~l~~l~~~~~~l~~~---~~~~i~~~ia~~L~~Lh~~h~~~iiHrDl-K~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .+++++..  ..+...   ....++.+++++|+|+|   +++|+|||| ||+|||          |||+|+.+.......
T Consensus        95 LVmE~~~G--~~L~~~~~~~~~~~~~~i~~aL~~lH---~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~  169 (365)
T PRK09188         95 LVRGWTEG--VPLHLARPHGDPAWFRSAHRALRDLH---RAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALY  169 (365)
T ss_pred             EEEEccCC--CCHHHhCccchHHHHHHHHHHHHHHH---HCCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchh
Confidence            44555432  222111   12467889999999995   679999999 999998          999999775433211


Q ss_pred             c-------ccceecccccccccC
Q 047196          812 Q-------TETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~-------~~~~gt~~Y~APE~l  827 (827)
                      .       +...+++.|+|||++
T Consensus       170 ~~~~~~d~~~~~~~~~~~~pe~~  192 (365)
T PRK09188        170 RIAAYEDLRHLLKHKRTYAPDAL  192 (365)
T ss_pred             hhhhhhhhhhhhccCccCCcccC
Confidence            1       334588999999975

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.74  E-value=8e-18  Score=185.55  Aligned_cols=151  Identities=24%  Similarity=0.333  Sum_probs=113.9

Q ss_pred             HHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC----
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED----  744 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~----  744 (827)
                      ...++|...+.||+|+||.||+|... .++.||||++...  .....+.+.+|+.+++.++||||+++++++....    
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            34578999999999999999999864 5889999998643  2334567889999999999999999999875432    


Q ss_pred             ----ceeeeeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          745 ----FKALDCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       745 ----~~~l~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                          +..++++...     ...+++.....++.++++||+|||   +++|+||||||+||+          |||+++...
T Consensus        94 ~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~  170 (355)
T cd07874          94 FQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_pred             cceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCCCEEEeeCcccccCC
Confidence                1122222211     123556667789999999999995   678999999999998          999998654


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ....  .....||+.|+|||++
T Consensus       171 ~~~~--~~~~~~t~~y~aPE~~  190 (355)
T cd07874         171 TSFM--MTPYVVTRYYRAPEVI  190 (355)
T ss_pred             Cccc--cCCccccCCccCHHHH
Confidence            3221  2334589999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2e-18  Score=199.18  Aligned_cols=70  Identities=30%  Similarity=0.393  Sum_probs=59.0

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeec
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSN  742 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~  742 (827)
                      ...+|++.+++|+|+||.|||++-+ ||+.||||++.... .+......+|+.+++++.|||+|+++.++.+
T Consensus       477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVE  548 (1351)
T KOG1035|consen  477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVE  548 (1351)
T ss_pred             HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhc
Confidence            4467888899999999999999965 89999999997653 3345678899999999999999998876544

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.74  E-value=1.1e-17  Score=181.84  Aligned_cols=147  Identities=23%  Similarity=0.279  Sum_probs=110.2

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHH---HhcCCCCceEEEeeeecCCceeee
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVM---KNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l---~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      |+..+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|++++   ++++|||++++++++...+..++.
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            455688999999999999864 68999999996532   22345566776655   567899999999998877655553


Q ss_pred             eeccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          750 CLHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       750 ~l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..+..         ...+++.....++.+++.|++|||   +.+|+||||||+||+          |||+++........
T Consensus        81 ~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  157 (324)
T cd05589          81 MEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDR  157 (324)
T ss_pred             EcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCc
Confidence            33322         234677788899999999999995   678999999999998          99998754322221


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||+.|||||++
T Consensus       158 -~~~~~g~~~y~aPE~~  173 (324)
T cd05589         158 -TSTFCGTPEFLAPEVL  173 (324)
T ss_pred             -ccccccCccccCHhHh
Confidence             1234589999999974

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.74  E-value=1.5e-17  Score=185.09  Aligned_cols=151  Identities=25%  Similarity=0.463  Sum_probs=112.2

Q ss_pred             hhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~  745 (827)
                      .++|...++||+|+||.||+|+..      .+..||||++.... ....+.|.+|++++++++ |||||+++++|.+...
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~  115 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGP  115 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCc
Confidence            356778899999999999999752      13579999996543 334567999999999996 9999999999987665


Q ss_pred             eee--eeeccC---------------------------------------------------------------------
Q 047196          746 KAL--DCLHST---------------------------------------------------------------------  754 (827)
Q Consensus       746 ~~l--~~l~~~---------------------------------------------------------------------  754 (827)
                      .++  +++...                                                                     
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (400)
T cd05105         116 IYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIK  195 (400)
T ss_pred             eEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhh
Confidence            443  222100                                                                     


Q ss_pred             -----------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---
Q 047196          755 -----------------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---  796 (827)
Q Consensus       755 -----------------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---  796 (827)
                                                         ...+.+.+...++.++++|++|||   +.+|+||||||+||+   
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dikp~Nill~~  272 (400)
T cd05105         196 EASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLAARNVLLAQ  272 (400)
T ss_pred             hhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHhEEEeC
Confidence                                               012455666789999999999995   578999999999998   


Q ss_pred             -------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 -------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                             |||+++......... .....+++.|||||++
T Consensus       273 ~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~  311 (400)
T cd05105         273 GKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESI  311 (400)
T ss_pred             CCEEEEEeCCcceeccccccccccCCcCCCcceEChhhh
Confidence                   999998764432221 1223467889999964

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.74  E-value=1.6e-17  Score=180.96  Aligned_cols=143  Identities=24%  Similarity=0.234  Sum_probs=109.0

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccCC
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHSTN  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~~  755 (827)
                      +.||+|+||.||+|+.. +++.||+|++...   .....+.+.+|+.++.++ +|||||++++++...+..++...+...
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            46999999999999864 6889999998753   223445678899988877 799999999998877765554333222


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          756 ----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       756 ----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                                ..+.+.....++.++++|++|||   +++|+||||||+||+          |||+++........ ....
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~-~~~~  156 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT-TSTF  156 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCc-cccc
Confidence                      24566677889999999999995   678999999999998          99998754322211 1234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .||+.|+|||++
T Consensus       157 ~gt~~y~aPE~~  168 (329)
T cd05618         157 CGTPNYIAPEIL  168 (329)
T ss_pred             cCCccccCHHHH
Confidence            589999999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=3.1e-18  Score=179.97  Aligned_cols=148  Identities=27%  Similarity=0.353  Sum_probs=113.5

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +-|+.++.||+|.|++|-.|+. -+|+.||||++.+...  ....++.+|++.|+-++|||||+++.........++...
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            3477778899999999999974 4799999999976532  234578889999999999999999988765544333221


Q ss_pred             c-----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCc
Q 047196          752 H-----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRS  809 (827)
Q Consensus       752 ~-----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~  809 (827)
                      -           .....+...-..++..||..|+.|+|..|   ||||||||+||.           |||++-.+.....
T Consensus        98 LGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLH---VVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~k  174 (864)
T KOG4717|consen   98 LGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLH---VVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKK  174 (864)
T ss_pred             ecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhh---hhcccCCcceeEEeeecCceEeeeccccccCCCcch
Confidence            1           11233444456678999999999998766   999999999986           9999876654443


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                        .+..+|+.+|-|||++
T Consensus       175 --L~TsCGSLAYSAPEIL  190 (864)
T KOG4717|consen  175 --LTTSCGSLAYSAPEIL  190 (864)
T ss_pred             --hhcccchhhccCchhh
Confidence              2456899999999985

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.73  E-value=6.2e-18  Score=186.37  Aligned_cols=143  Identities=21%  Similarity=0.283  Sum_probs=111.1

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ..+|...+.||+|+||.||+|+.. +++.||+|+....      ....|+.++++++|+|||++++++......++...+
T Consensus        65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  138 (357)
T PHA03209         65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPH  138 (357)
T ss_pred             hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEc
Confidence            356899999999999999999865 5788999975332      235699999999999999999998877655442221


Q ss_pred             ----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                                .....+.+.....|+.+++.||+|||   +++|+||||||+||+          |||+++.......  .
T Consensus       139 ~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~--~  213 (357)
T PHA03209        139 YSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPA--F  213 (357)
T ss_pred             cCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEecCccccccccCcc--c
Confidence                      12235678888999999999999995   568999999999998          9999875432211  1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||+.|+|||++
T Consensus       214 ~~~~gt~~y~aPE~~  228 (357)
T PHA03209        214 LGLAGTVETNAPEVL  228 (357)
T ss_pred             ccccccccccCCeec
Confidence            224589999999974

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.73  E-value=1.6e-17  Score=180.93  Aligned_cols=143  Identities=23%  Similarity=0.232  Sum_probs=109.7

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||.||+|+.. +++.||||+++...   ....+.+.+|+.+++++ +|||||++++++......++...+.. 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46999999999999864 68999999997532   23345688999999998 69999999999887765554333222 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...+.+.....++.+++.|++|||   +++|+||||||+||+          |||+++........ ....
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~-~~~~  156 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDT-TSTF  156 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCc-cccc
Confidence                     234667778889999999999995   678999999999998          99998753222211 1234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|+|||++
T Consensus       157 ~gt~~y~aPE~~  168 (329)
T cd05588         157 CGTPNYIAPEIL  168 (329)
T ss_pred             cCCccccCHHHH
Confidence            589999999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.73  E-value=2.3e-17  Score=180.10  Aligned_cols=148  Identities=23%  Similarity=0.298  Sum_probs=115.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..+.||+|+||.||+|+.. +|..||+|++... .....+.+.+|++++++++|+|||++++++...+..++...+
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH   84 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEec
Confidence            57888899999999999999865 6889999988654 233456799999999999999999999999887765554333


Q ss_pred             cCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 STN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ...          ..+.+.....++.+++.|+.|||.  ..+|+||||||+||+          |||+++.......   
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~--~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~---  159 (333)
T cd06650          85 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA---  159 (333)
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhcc---
Confidence            322          224455567899999999999973  346999999999998          9999876533211   


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||..|+|||++
T Consensus       160 ~~~~~~~~y~aPE~~  174 (333)
T cd06650         160 NSFVGTRSYMSPERL  174 (333)
T ss_pred             ccCCCCccccCHHHh
Confidence            223589999999974

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.73  E-value=1.6e-17  Score=180.70  Aligned_cols=148  Identities=22%  Similarity=0.192  Sum_probs=109.5

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCC-ceEEEeeeecCCceeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRN-HVKRISSCSNEDFKALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~n-iv~~~~~~~~~~~~~l~~  750 (827)
                      +|+..+.||+|+||.||+|+.. +++.||||++....   ....+.+..|+++++.++|++ ++++.+++...+..++..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            4677889999999999999865 57899999986532   233467889999999998765 667777776665444432


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+.+.....++.+++.||+|||   +++|+||||||+|||          |||+++........
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  157 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKT  157 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCc
Confidence            2221          123566777889999999999995   578999999999998          99998753222111


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||+.|+|||++
T Consensus       158 -~~~~~gt~~y~aPE~~  173 (324)
T cd05587         158 -TRTFCGTPDYIAPEII  173 (324)
T ss_pred             -eeeecCCccccChhhh
Confidence             1234589999999974

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=5.5e-18  Score=184.28  Aligned_cols=148  Identities=23%  Similarity=0.313  Sum_probs=120.8

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      +.|+.++.+|.|+-|.|..|+. .+|+.+|||++.+..   .......++||-+|+-+.|||++++++.+.+....++..
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            4577788999999999999985 579999999997652   223457899999999999999999999998887777655


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +|..+          +.+...+..++..||..|+.|+|.   .+|+|||+||+|+|          |||+|.+-..+.- 
T Consensus        92 Eyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gkl-  167 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKL-  167 (786)
T ss_pred             EecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccCEeeeccceeecccCCcc-
Confidence            55443          445666778899999999999964   45999999999988          9999987655432 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      . .+.||++.|.|||++
T Consensus       168 L-eTSCGSPHYA~PEIV  183 (786)
T KOG0588|consen  168 L-ETSCGSPHYAAPEIV  183 (786)
T ss_pred             c-cccCCCcccCCchhh
Confidence            2 346799999999985

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.73  E-value=2e-17  Score=179.32  Aligned_cols=143  Identities=26%  Similarity=0.362  Sum_probs=105.4

Q ss_pred             cceEecCCceEEEEEEec---CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--cee--eeeec
Q 047196          680 ENLIGVGSFGSVYKGRLH---DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKA--LDCLH  752 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~--l~~l~  752 (827)
                      ..+||+|+||.||+|+..   ++..||+|++....  ....+.+|++++++++|||+|++.+++....  ..+  +++..
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence            357999999999999864   35789999986532  2345788999999999999999999885432  222  22221


Q ss_pred             c----------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eecccc
Q 047196          753 S----------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGR  802 (827)
Q Consensus       753 ~----------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~  802 (827)
                      .                ....+.+.....++.|+++||+|||   +.+|+||||||+||+              |||+++
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07867          84 HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeecccee
Confidence            1                0113556667789999999999995   678999999999987              999998


Q ss_pred             cccCCCcc--ccccceecccccccccC
Q 047196          803 LLTGDRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ........  ......||++|+|||++
T Consensus       161 ~~~~~~~~~~~~~~~~~t~~y~aPE~~  187 (317)
T cd07867         161 LFNSPLKPLADLDPVVVTFWYRAPELL  187 (317)
T ss_pred             ccCCCcccccccCcceecccccCcHHh
Confidence            76433221  11234589999999974

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.73  E-value=1.4e-17  Score=184.26  Aligned_cols=150  Identities=24%  Similarity=0.331  Sum_probs=113.5

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-----
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-----  744 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-----  744 (827)
                      ..++|...+.||+|+||.||+|... .++.||||++...  .....+.+.+|+.+++.++|||++++++.+...+     
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            4567899999999999999999864 5889999998653  2334567889999999999999999998875432     


Q ss_pred             ---ceeeeeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 ---FKALDCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 ---~~~l~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                         +..++++...     ...+++.....++.|+++||+|||   +++|+||||||+||+          |||+|+....
T Consensus       102 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~  178 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  178 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEECCCCcEEEEeCCCccccCC
Confidence               1222332211     123456667789999999999995   678999999999998          9999986543


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...  .....||++|+|||++
T Consensus       179 ~~~--~~~~~~t~~y~aPE~~  197 (364)
T cd07875         179 SFM--MTPYVVTRYYRAPEVI  197 (364)
T ss_pred             CCc--ccCCcccCCcCCHHHH
Confidence            221  2334589999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.73  E-value=6.8e-18  Score=197.01  Aligned_cols=149  Identities=29%  Similarity=0.509  Sum_probs=112.6

Q ss_pred             cccccceEecCCceEEEEEEecC--Cc----EEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHD--GI----EVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~--g~----~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-  747 (827)
                      ..+..+.||+|.||.||+|...+  |.    .||||.+.... .+...+|.+|..+|++++|||||+++|.|.+....+ 
T Consensus       693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i  772 (1025)
T KOG1095|consen  693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLI  772 (1025)
T ss_pred             heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEE
Confidence            34456789999999999998643  43    49999997653 556778999999999999999999999998865443 


Q ss_pred             -eeeeccC---------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccc
Q 047196          748 -LDCLHST---------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIG  801 (827)
Q Consensus       748 -l~~l~~~---------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla  801 (827)
                       +++++.+               ...+...+.+.++.+||+|+.||+   ++++|||||.+.|+|          |||+|
T Consensus       773 ~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFGlA  849 (1025)
T KOG1095|consen  773 LLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFGLA  849 (1025)
T ss_pred             EehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccchh
Confidence             3444332               224667788999999999999996   555999999999988          99999


Q ss_pred             ccc-cCCCccccccceecccccccccC
Q 047196          802 RLL-TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~-~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |.+ ..+.........-...|||||.+
T Consensus       850 rDiy~~~yyr~~~~a~lPvkWm~PEsl  876 (1025)
T KOG1095|consen  850 RDIYDKDYYRKHGEAMLPVKWMPPESL  876 (1025)
T ss_pred             HhhhhchheeccCccccceecCCHHHH
Confidence            944 33322211111235689999974

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.73  E-value=2.3e-17  Score=173.55  Aligned_cols=150  Identities=22%  Similarity=0.414  Sum_probs=115.4

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .++|+..++||+|+||.||+|...++..||+|.+.... ...+.+.+|++++++++|+|++++++++...+..++...+.
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYM   83 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecC
Confidence            35688889999999999999998888899999976432 23567899999999999999999999887766544432221


Q ss_pred             C------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 T------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .            .....+.++..++.++++|++|||   +.+++||||||+||+          |||+++.........
T Consensus        84 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05072          84 AKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA  160 (261)
T ss_pred             CCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEecCCCcEEECCCccceecCCCceec
Confidence            1            234566777889999999999996   567999999999988          999998764332222


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++..|+|||++
T Consensus       161 ~~~~~~~~~y~aPE~~  176 (261)
T cd05072         161 REGAKFPIKWTAPEAI  176 (261)
T ss_pred             cCCCccceecCCHHHh
Confidence            2222357789999963

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.73  E-value=2e-17  Score=180.02  Aligned_cols=143  Identities=29%  Similarity=0.351  Sum_probs=106.2

Q ss_pred             ceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHH-HHHhcCCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECE-VMKNIRHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~-~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||.||+|+. .+|+.||||++....   ....+++.+|.. +++.++|||||++++++...+..++...+.. 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4699999999999986 468999999986532   223345566665 5778999999999999887765554333222 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...+.+.....++.++++||+|||   +.+|+||||||+||+          |||+++....... .....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~-~~~~~  156 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSD-TTTTF  156 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCC-Ccccc
Confidence                     234566677789999999999995   678999999999998          9999875432211 12234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|||||++
T Consensus       157 ~gt~~y~aPE~~  168 (325)
T cd05604         157 CGTPEYLAPEVI  168 (325)
T ss_pred             cCChhhCCHHHH
Confidence            589999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.73  E-value=2e-17  Score=179.45  Aligned_cols=143  Identities=27%  Similarity=0.318  Sum_probs=109.8

Q ss_pred             ceEecCCceEEEEEEe----cCCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          681 NLIGVGSFGSVYKGRL----HDGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      +.||+|+||.||+++.    .+|+.||||++.....  .....+.+|++++++++|||||++++++..++..++...+..
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999874    3578999999975322  234567889999999999999999999887765554333222


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          755 ----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       755 ----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                                ...+++.....++.++++||+|||   +.+|+||||||+||+          |||+++........ ...
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~-~~~  157 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK-AYS  157 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCc-eec
Confidence                      224567777889999999999995   678999999999998          99998865433221 123


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..||+.|||||++
T Consensus       158 ~~g~~~y~aPE~~  170 (318)
T cd05582         158 FCGTVEYMAPEVV  170 (318)
T ss_pred             ccCChhhcCHHHH
Confidence            4589999999963

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.73  E-value=1.4e-17  Score=182.05  Aligned_cols=151  Identities=24%  Similarity=0.435  Sum_probs=111.6

Q ss_pred             hhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~  745 (827)
                      .++|+..++||+|+||.||+|+..      +++.||+|+++... ....+.+.+|+++++++ +|+||++++++|...+.
T Consensus         6 ~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~   85 (337)
T cd05054           6 RDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGG   85 (337)
T ss_pred             HHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCC
Confidence            357888899999999999999632      35789999986532 33446788999999999 89999999998865442


Q ss_pred             ee---eeeeccC--------------------------------------------------------------------
Q 047196          746 KA---LDCLHST--------------------------------------------------------------------  754 (827)
Q Consensus       746 ~~---l~~l~~~--------------------------------------------------------------------  754 (827)
                      ..   +++....                                                                    
T Consensus        86 ~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (337)
T cd05054          86 PLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDEL  165 (337)
T ss_pred             CEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHH
Confidence            21   1111100                                                                    


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc-ccceeccccc
Q 047196          755 -NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ-TETLVTIGYM  822 (827)
Q Consensus       755 -~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~-~~~~gt~~Y~  822 (827)
                       ...+++.....++.+++.|++|||   +.+|+||||||+||+          |||+++.+........ ....++..||
T Consensus       166 ~~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~  242 (337)
T cd05054         166 YKEPLTLEDLISYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWM  242 (337)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCcccc
Confidence             014567778899999999999996   678999999999997          9999987644332221 2223678899


Q ss_pred             ccccC
Q 047196          823 APGLL  827 (827)
Q Consensus       823 APE~l  827 (827)
                      |||++
T Consensus       243 aPE~~  247 (337)
T cd05054         243 APESI  247 (337)
T ss_pred             CcHHh
Confidence            99963

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.73  E-value=2.2e-17  Score=178.91  Aligned_cols=143  Identities=21%  Similarity=0.262  Sum_probs=105.6

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccCC
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHSTN  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~~  755 (827)
                      ++||+|+||.||+|+.. +++.||||++....   ....+.+..|.+++... +||||+++++++...+..++...+...
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999864 58899999986532   22334566677777654 899999999998777655443332221


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          756 ----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       756 ----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                                ..+.......++.|++.||+|||   +++|+||||||+||+          |||+++....... .....
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~-~~~~~  156 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEG-KASTF  156 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCC-ccccc
Confidence                      23555666779999999999996   578999999999998          9999976533222 12234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|||||++
T Consensus       157 ~gt~~y~aPE~~  168 (316)
T cd05592         157 CGTPDYIAPEIL  168 (316)
T ss_pred             cCCccccCHHHH
Confidence            589999999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.73  E-value=1.9e-17  Score=179.79  Aligned_cols=143  Identities=24%  Similarity=0.243  Sum_probs=108.4

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||.||+|+.. +|+.||||++....   ....+.+..|+++++.+ +||||+++++++...+..++...+.. 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            46999999999999865 58899999986532   22345678899999876 79999999999887765544333322 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...+.+.....++.++++||+|||   +.+|+||||||+||+          |||+++........ ....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~-~~~~  156 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT-TTTF  156 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeecccceecccCCcc-cccc
Confidence                     224566677889999999999995   678999999999998          99998764322221 2234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .||+.|+|||++
T Consensus       157 ~gt~~y~aPE~~  168 (321)
T cd05591         157 CGTPDYIAPEIL  168 (321)
T ss_pred             ccCccccCHHHH
Confidence            589999999963

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.73  E-value=1.9e-17  Score=174.34  Aligned_cols=139  Identities=23%  Similarity=0.326  Sum_probs=103.9

Q ss_pred             ceEecCCceEEEEEEecC-------------CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          681 NLIGVGSFGSVYKGRLHD-------------GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~-------------g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      +.||+|+||.||+|++.+             ...||+|++........+.|.+|+.++++++|||+|++++++......+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            358999999999997532             2358999886554445567899999999999999999999998765544


Q ss_pred             eeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------------eec
Q 047196          748 LDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------------DFG  799 (827)
Q Consensus       748 l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------------DFG  799 (827)
                      +...+.           ....+++.....++.|+++|++||   |+++|+||||||+||+                 |||
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g  157 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYL---EDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPG  157 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh---hhCCeECCCCCcccEEEecCCccCCCCceeEeCCCC
Confidence            422221           123467777889999999999999   4788999999999988                 455


Q ss_pred             ccccccCCCccccccceecccccccccC
Q 047196          800 IGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       800 la~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ++.....     .....++..|||||++
T Consensus       158 ~~~~~~~-----~~~~~~~~~y~aPE~~  180 (262)
T cd05077         158 IPITVLS-----RQECVERIPWIAPECV  180 (262)
T ss_pred             CCccccC-----cccccccccccChhhh
Confidence            5443221     1223478899999964

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=2.5e-17  Score=175.71  Aligned_cols=146  Identities=22%  Similarity=0.318  Sum_probs=112.2

Q ss_pred             ccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          677 FSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      |+..++||+|+||.||++.. .+++.||||++.....   .....+.+|++++++++|+|+|++.+.+...+..++...+
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            66778999999999999986 4689999999865321   2234578899999999999999999998776655443222


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+.+.....++.+++.|++|||   +.+|+||||||+||+          |||+++....... 
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-  157 (285)
T cd05605          82 MNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET-  157 (285)
T ss_pred             cCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc-
Confidence            11            123567777889999999999996   568999999999988          9999876543222 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+|++.|||||++
T Consensus       158 -~~~~~~~~~y~aPE~~  173 (285)
T cd05605         158 -IRGRVGTVGYMAPEVV  173 (285)
T ss_pred             -cccccCCCCccCcHHh
Confidence             1234589999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.73  E-value=2.7e-17  Score=175.72  Aligned_cols=150  Identities=27%  Similarity=0.423  Sum_probs=114.9

Q ss_pred             hcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .+|...+.||+|+||+||++..      .++..||||.+........+.+.+|++++++++|+|++++++++...+..++
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            4677889999999999999974      2346799999876655556789999999999999999999999987665544


Q ss_pred             eeeccC-----------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          749 DCLHST-----------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       749 ~~l~~~-----------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      ...+..                       ...+.+.....++.+++.|++|||   +++|+||||||+||+         
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~~i~H~dlkp~Nili~~~~~~kl  161 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI  161 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEe
Confidence            332211                       013677788899999999999995   678999999999998         


Q ss_pred             -eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 -DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                       |||+++........ ......++..|+|||++
T Consensus       162 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  194 (288)
T cd05093         162 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  194 (288)
T ss_pred             ccCCccccccCCceeecCCCCCccccccCHHHh
Confidence             99998765432211 11223357889999974

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=6.4e-19  Score=191.27  Aligned_cols=202  Identities=23%  Similarity=0.234  Sum_probs=110.9

Q ss_pred             EEcCCCCCc-cccCccccCCCCCCEEECCCCCCCcc----CChhhhhccccceEEecCCCCCC------ccccccCCCCC
Q 047196          103 LNISSLNLQ-GTIPPQLGNLSSLTTLNLSHNKLSGD----IPPSIFTMHKLKFLDFSDNQLSG------SLSSVTFNLSS  171 (827)
Q Consensus       103 L~L~~~~l~-g~~~~~l~~L~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~LdLs~N~l~g------~~p~~~~~l~~  171 (827)
                      |+|..+.++ +.....+..++.|+.|+++++.++..    ++..+...+.|++|+++++.+.+      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            556666665 23334455666677777777776432    44455556667777777776652      22334555666


Q ss_pred             CcEEEcCCCCCCCCcchhHhhcc--ccccEEEeecccccc----cCCccCCCC-CCCcEEEccCCCCccc----CCCcCc
Q 047196          172 VLDIRLDSDKLSGELPVNICNYL--HYLKVLFLAKNMFHG----QIPLALSKC-KRLQLLNLGFKKLSGA----IPKEIS  240 (827)
Q Consensus       172 L~~L~L~~n~l~g~ip~~~~~~~--~~L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~~~  240 (827)
                      |+.|++++|.+.+..+..+....  ++|++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            66666666666654444443332  237777777776652    222334445 6667777777766632    233444


Q ss_pred             CCccccEEEccccccccc----ccccccCcCCCcEEEeecccCcccCc----hhhhcCCCccEEEecCCccc
Q 047196          241 NLTILRKISLRNNKLRGE----IPHEIGYLPNLENLVLGFNNLVGVVP----AAIFNMSTVKKIYLLDNSLL  304 (827)
Q Consensus       241 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~l~~n~l~  304 (827)
                      .+++|++|++++|.+++.    ++..+..+++|++|+|++|.+++...    ..+..+++|++|++++|.+.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            555666677766666532    23334444566666666666653322    22333444555555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.73  E-value=1.2e-17  Score=186.32  Aligned_cols=145  Identities=24%  Similarity=0.308  Sum_probs=111.8

Q ss_pred             hcccccceEecCCceEEEEEEec---CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH---DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .+|...+.||+|+||.||+|...   .++.||||.+...     +.+.+|++++++++|||||++++++......++...
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e  166 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMP  166 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEeh
Confidence            46888899999999999999753   3578999987543     235689999999999999999998876654443221


Q ss_pred             c---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc-
Q 047196          752 H---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI-  811 (827)
Q Consensus       752 ~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~-  811 (827)
                      +         .....+.+.+...++.+++.||+|||   +++|+||||||+||+          |||+|+.+....... 
T Consensus       167 ~~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~  243 (392)
T PHA03207        167 KYKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQ  243 (392)
T ss_pred             hcCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEccCccccccCccccccc
Confidence            1         12345678888999999999999996   578999999999998          999997664432221 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....||+.|+|||++
T Consensus       244 ~~~~~gt~~y~aPE~~  259 (392)
T PHA03207        244 CYGWSGTLETNSPELL  259 (392)
T ss_pred             ccccccccCccCHhHh
Confidence            1223589999999974

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.73  E-value=5.1e-18  Score=181.32  Aligned_cols=148  Identities=26%  Similarity=0.456  Sum_probs=114.9

Q ss_pred             ccccceEecCCceEEEEEEecCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeecc
Q 047196          677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLHS  753 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~~  753 (827)
                      ....++||+|.||.|..++...+..||||.++... .....+|.+||++|.+++|||||+++|.|..++...+  ++++.
T Consensus       540 L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEn  619 (807)
T KOG1094|consen  540 LRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMEN  619 (807)
T ss_pred             eehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhc
Confidence            34457899999999999998888999999998654 4456899999999999999999999999988765544  33322


Q ss_pred             CC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc-cCCCcccc
Q 047196          754 TN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQ  812 (827)
Q Consensus       754 ~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~-~~~~~~~~  812 (827)
                      +.          ...+-..-..|+.|||.|++||.   +-++||||+.+.|+|          |||++|-+ ..+...++
T Consensus       620 GDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vq  696 (807)
T KOG1094|consen  620 GDLNQFLSAHELPTAETAPGVSICTQIASGMAYLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQ  696 (807)
T ss_pred             CcHHHHHHhccCcccccchhHHHHHHHHHHHHHHH---hhchhhccccccceeecCcccEEecCcccccccccCCceeee
Confidence            11          11233345679999999999995   567999999999998          99999954 44444444


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ...+-.+.|||||-|
T Consensus       697 gr~vlpiRwmawEsi  711 (807)
T KOG1094|consen  697 GRAVLPIRWMAWESI  711 (807)
T ss_pred             cceeeeeeehhHHHH
Confidence            444568899999953

>PHA02988 hypothetical protein; Provisional

Probab=99.73  E-value=2.7e-17  Score=175.21  Aligned_cols=141  Identities=21%  Similarity=0.255  Sum_probs=108.2

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeec--CC--cee--eee
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSN--ED--FKA--LDC  750 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~--~~--~~~--l~~  750 (827)
                      ...||+|++|.||+|.+ +|+.||||++....   ....+.|.+|++++++++|||||+++|++.+  +.  ...  +++
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            36899999999999998 58899999986532   2235678999999999999999999999876  22  222  233


Q ss_pred             ecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          751 LHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       751 l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ...        ....+++.....++.+++.|+.|+|..  .+++||||||+||+          |||+++......    
T Consensus       104 ~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~----  177 (283)
T PHA02988        104 CTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPP----  177 (283)
T ss_pred             CCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhcccc----
Confidence            222        123467788899999999999999742  35779999999998          999988664321    


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||..|+|||++
T Consensus       178 ~~~~~~~~y~aPE~~  192 (283)
T PHA02988        178 FKNVNFMVYFSYKML  192 (283)
T ss_pred             ccccCcccccCHHHh
Confidence            224588999999974

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.73  E-value=2.7e-17  Score=178.77  Aligned_cols=148  Identities=22%  Similarity=0.195  Sum_probs=110.0

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l~~  750 (827)
                      +|...+.||+|+||.||+|+.. +++.||||++....   ....+.+..|.+++..+. |++++++.+++...+..++..
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4677889999999999999865 57899999987542   223345677888888875 777888888887766554433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+.+.+...++.++++||+|||   +.+|+||||||+|||          |||+++........
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~  157 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVT  157 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCc
Confidence            3222          134566777889999999999996   578999999999998          99998754322221


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....||+.|||||++
T Consensus       158 -~~~~~gt~~y~aPE~~  173 (323)
T cd05616         158 -TKTFCGTPDYIAPEII  173 (323)
T ss_pred             -cccCCCChhhcCHHHh
Confidence             1234589999999974

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.72  E-value=1.6e-17  Score=182.31  Aligned_cols=150  Identities=24%  Similarity=0.370  Sum_probs=113.5

Q ss_pred             HHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc--
Q 047196          671 FRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF--  745 (827)
Q Consensus       671 ~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~--  745 (827)
                      ....++|...+.||+|+||.||+|.. .+++.||||++....  ....+++.+|++++++++|+|||++++++.....  
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07878          11 WEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE   90 (343)
T ss_pred             hhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence            44567899999999999999999985 468899999986532  2234567899999999999999999887653211  


Q ss_pred             ----eee--eeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          746 ----KAL--DCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       746 ----~~l--~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                          .++  ++...      ....+++.....++.|+++||+|||   +++|+||||||+||+          |||+++.
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  167 (343)
T cd07878          91 NFNEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDCELRILDFGLARQ  167 (343)
T ss_pred             ccCcEEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCChhhEEECCCCCEEEcCCcccee
Confidence                111  11100      1234667777889999999999995   678999999999998          9999986


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....    ...+||+.|+|||++
T Consensus       168 ~~~~~----~~~~~t~~y~aPE~~  187 (343)
T cd07878         168 ADDEM----TGYVATRWYRAPEIM  187 (343)
T ss_pred             cCCCc----CCccccccccCchHh
Confidence            54321    234589999999974

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.72  E-value=3.8e-17  Score=173.71  Aligned_cols=146  Identities=23%  Similarity=0.281  Sum_probs=114.8

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..++||+|+||.||+|+. .+++.||||++... .....++|.+|++++++++|||++++++++...+...+...+.
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            567778999999999999985 46889999998654 2334567999999999999999999999998876655543333


Q ss_pred             CCC------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccccee
Q 047196          754 TNC------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV  817 (827)
Q Consensus       754 ~~~------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~g  817 (827)
                      ..+      .+.+.....++.+++.|++|||   +.+|+|+||||+||+          |||++.......   ....+|
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~---~~~~~~  155 (279)
T cd06619          82 DGGSLDVYRKIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI---AKTYVG  155 (279)
T ss_pred             CCCChHHhhcCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc---ccCCCC
Confidence            322      2455666789999999999995   678999999999998          999987654321   123458


Q ss_pred             cccccccccC
Q 047196          818 TIGYMAPGLL  827 (827)
Q Consensus       818 t~~Y~APE~l  827 (827)
                      |..|+|||++
T Consensus       156 ~~~y~aPE~~  165 (279)
T cd06619         156 TNAYMAPERI  165 (279)
T ss_pred             ChhhcCceee
Confidence            9999999974

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.72  E-value=2.1e-17  Score=174.55  Aligned_cols=153  Identities=25%  Similarity=0.379  Sum_probs=116.9

Q ss_pred             HHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          671 FRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       671 ~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      +.+++++.....||+|+||.||+|+.. +++.||+|.+........+.+.+|++++++++|+|++++++++..++..++.
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            345667777789999999999999854 6788999998766655667899999999999999999999999887655543


Q ss_pred             eeccCC-----------CCC--CHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eeccccccc
Q 047196          750 CLHSTN-----------CSL--NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLT  805 (827)
Q Consensus       750 ~l~~~~-----------~~l--~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~  805 (827)
                      ..+...           ..+  .+.....++.++++|++|||   +.+|+||||||+||+           |||++....
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~  160 (268)
T cd06624          84 MEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLA  160 (268)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCeEEEecchhheecc
Confidence            332221           122  45556678899999999995   678999999999988           888876554


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..... .....|++.|+|||++
T Consensus       161 ~~~~~-~~~~~~~~~~~aPE~~  181 (268)
T cd06624         161 GINPC-TETFTGTLQYMAPEVI  181 (268)
T ss_pred             cCCCc-cccCCCCccccChhhh
Confidence            32221 1123478999999963

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.72  E-value=3.1e-17  Score=178.22  Aligned_cols=143  Identities=29%  Similarity=0.329  Sum_probs=105.0

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHH-HHHhcCCCCceEEEeeeecCCceeeeeeccCC
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECE-VMKNIRHRNHVKRISSCSNEDFKALDCLHSTN  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~-~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~  755 (827)
                      ++||+|+||.||+|+.. +|+.||||++....   .....++.+|+. +++.++|||||++++++...+..++...+...
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999864 68999999986532   122345556654 68899999999999988777655543333222


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          756 ----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       756 ----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                                ..+.......++.++++||+|||   +.+|+||||||+||+          |||+++....... .....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~  156 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEE-TTSTF  156 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCC-ccccc
Confidence                      23455566678999999999995   678999999999998          9999875422221 12234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|+|||++
T Consensus       157 ~gt~~y~aPE~~  168 (321)
T cd05603         157 CGTPEYLAPEVL  168 (321)
T ss_pred             cCCcccCCHHHh
Confidence            589999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=3.9e-19  Score=192.93  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             EEeeccccc-ccCCccCCCCCCCcEEEccCCCCccc----CCCcCcCCccccEEEcccccccc------cccccccCcCC
Q 047196          200 LFLAKNMFH-GQIPLALSKCKRLQLLNLGFKKLSGA----IPKEISNLTILRKISLRNNKLRG------EIPHEIGYLPN  268 (827)
Q Consensus       200 L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~  268 (827)
                      |+|..+.++ ...+..+..+.+|+.|+++++.++..    ++..+...+.|++|+++++.+.+      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            555666655 23334444555566666666666422    33444455556666666665541      22334444555


Q ss_pred             CcEEEeecccCcccCchhhhcCCC---ccEEEecCCcc
Q 047196          269 LENLVLGFNNLVGVVPAAIFNMST---VKKIYLLDNSL  303 (827)
Q Consensus       269 L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~l~~n~l  303 (827)
                      |++|++++|.+.+..+..+..+..   |+.|++++|.+
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~  120 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL  120 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence            555555555555444444333333   44444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.72  E-value=5.1e-18  Score=176.63  Aligned_cols=148  Identities=22%  Similarity=0.329  Sum_probs=114.2

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee--e
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA--L  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~--l  748 (827)
                      ..|..-++||+|+||.||-++. .+|+.+|.|++.+...   +...-...|-++|.++..+.||.+..++...+..-  +
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL  264 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL  264 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence            4578889999999999999975 5799999999865432   22334678999999999999999887776665332  2


Q ss_pred             eeec----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLH----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ..+.          .....++..+..-+|.+|+.||++|   |..+||.||+||+|||          |.|+|--+....
T Consensus       265 tlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehl---H~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~  341 (591)
T KOG0986|consen  265 TLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHL---HRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGK  341 (591)
T ss_pred             EeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHH---HhcceeeccCChhheeeccCCCeEeeccceEEecCCCC
Confidence            2221          1234567777788999999999999   5788999999999999          888887776554


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..  +..+||.|||||||+
T Consensus       342 ~~--~~rvGT~GYMAPEvl  358 (591)
T KOG0986|consen  342 PI--RGRVGTVGYMAPEVL  358 (591)
T ss_pred             cc--ccccCcccccCHHHH
Confidence            43  345799999999985

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.72  E-value=3.1e-17  Score=177.66  Aligned_cols=143  Identities=20%  Similarity=0.270  Sum_probs=107.3

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccCC
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHSTN  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~~  755 (827)
                      +.||+|+||+||+|+.. +++.||||+++...   ....+.+..|.++++.. +||||+++++++...+..++...+...
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999865 57899999987542   12345567788888764 899999999998877665443333221


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          756 ----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       756 ----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                                ..+++.+...++.++++|++|||   +++|+||||||+||+          |||+++........ ....
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~  156 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAK-TCTF  156 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCc-eeee
Confidence                      24566777889999999999995   678999999999998          99998754222111 1234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .||+.|||||++
T Consensus       157 ~gt~~y~aPE~~  168 (316)
T cd05619         157 CGTPDYIAPEIL  168 (316)
T ss_pred             cCCccccCHHHH
Confidence            589999999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.72  E-value=2.4e-18  Score=170.92  Aligned_cols=152  Identities=29%  Similarity=0.353  Sum_probs=108.8

Q ss_pred             HhhcccccceEecCCceEEEEEEec---C--CcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH---D--GIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~---~--g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      ....|+....||+|.||.||||..+   +  .+.+|+|+++...  .......-||+.+++.++|+|+|.+...+...+.
T Consensus        22 ~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~  101 (438)
T KOG0666|consen   22 DLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDK  101 (438)
T ss_pred             HHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc
Confidence            3456888899999999999999643   2  2379999996542  1223456789999999999999998877655332


Q ss_pred             -eeeeeecc------------C--CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------
Q 047196          746 -KALDCLHS------------T--NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------  796 (827)
Q Consensus       746 -~~l~~l~~------------~--~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------  796 (827)
                       ..+.+.+.            .  ...+.-.....|..|+..|+.|||   +.=|+||||||+||+              
T Consensus       102 ~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLKPaNIlvmgdgperG~VKIa  178 (438)
T KOG0666|consen  102 KVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLKPANILVMGDGPERGRVKIA  178 (438)
T ss_pred             eEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCCcceEEEeccCCccCeeEee
Confidence             22211111            1  122333445678899999999995   667999999999998              


Q ss_pred             eecccccccCCCcc--ccccceecccccccccC
Q 047196          797 DFGIGRLLTGDRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 DFGla~~~~~~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      |+|+||++...-..  .....+.|++|.|||.+
T Consensus       179 DlGlaR~~~~plkpl~s~d~VVVTiWYRAPELL  211 (438)
T KOG0666|consen  179 DLGLARLFNNPLKPLASLDPVVVTIWYRAPELL  211 (438)
T ss_pred             cccHHHHhhccccccccCCceEEEEEecChHHh
Confidence            99999998643221  12335589999999974

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.72  E-value=2.2e-17  Score=175.70  Aligned_cols=141  Identities=26%  Similarity=0.288  Sum_probs=107.7

Q ss_pred             EecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC----
Q 047196          683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST----  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~----  754 (827)
                      ||+|+||+||+++.. +|+.||||++.....   ...+.+..|++++++++|+|++++.+++......++...+..    
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            699999999999864 689999999865322   233567889999999999999999988877665444222211    


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          755 ----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       755 ----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                                ...+++.....++.|++.|++|||   +.+|+||||||+||+          |||+++.+...... ...
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~  156 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSK-TKG  156 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcc-ccc
Confidence                      124567777889999999999995   678999999999997          99999766433221 122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..||+.|+|||++
T Consensus       157 ~~g~~~y~aPE~~  169 (280)
T cd05608         157 YAGTPGFMAPELL  169 (280)
T ss_pred             cCCCcCccCHHHh
Confidence            3589999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.72  E-value=2.3e-17  Score=188.77  Aligned_cols=153  Identities=24%  Similarity=0.316  Sum_probs=112.8

Q ss_pred             HHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc---
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF---  745 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~---  745 (827)
                      ...++|...+.||+|+||.||+|+. .+|+.||||++...  .......+.+|+.++..++|+|+|+....+...+.   
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            3456899999999999999999985 57899999998653  23445678899999999999999998776543221   


Q ss_pred             -----e--eeeeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------
Q 047196          746 -----K--ALDCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------  796 (827)
Q Consensus       746 -----~--~l~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------  796 (827)
                           .  .+++....            ...+.......++.+++.||.|+|   +++|+||||||+||+          
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH---~~~IiHrDLKP~NILl~~~~~vkL~  185 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH---SKHMIHRDIKSANILLCSNGLVKLG  185 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEeCCCCEEEE
Confidence                 1  12222111            123455566778899999999995   678999999999998          


Q ss_pred             eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                      |||+++.+...... .....+||++|||||++
T Consensus       186 DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  217 (496)
T PTZ00283        186 DFGFSKMYAATVSDDVGRTFCGTPYYVAPEIW  217 (496)
T ss_pred             ecccCeeccccccccccccccCCcceeCHHHh
Confidence            99999876433221 12234589999999974

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.72  E-value=3.3e-17  Score=178.08  Aligned_cols=143  Identities=31%  Similarity=0.355  Sum_probs=105.0

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHH-HHHhcCCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECE-VMKNIRHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~-~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||+||+|+.. +|+.||||++....   ....+++.+|.. +++.++|||||++++++...+..++...+.. 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            46999999999999864 68999999986432   122344555554 5688999999999998877765544332222 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...+.+.....++.++++||+|||   +.+|+||||||+|||          |||+++....... .....
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~  156 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK-TTSTF  156 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCC-ccccc
Confidence                     123556667789999999999995   678999999999998          9999875432222 12234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|||||++
T Consensus       157 ~gt~~y~aPE~~  168 (323)
T cd05575         157 CGTPEYLAPEVL  168 (323)
T ss_pred             cCChhhcChhhh
Confidence            589999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.72  E-value=3.6e-17  Score=174.30  Aligned_cols=150  Identities=27%  Similarity=0.410  Sum_probs=111.8

Q ss_pred             hcccccceEecCCceEEEEEEe-----cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .+|+..+.||+|+||.||+|+.     .++..||+|.+.... ....++|.+|++++++++|+|+|++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            3567778999999999999974     246789999986432 3345679999999999999999999999877665443


Q ss_pred             eeeccCC---------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----
Q 047196          749 DCLHSTN---------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----  796 (827)
Q Consensus       749 ~~l~~~~---------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----  796 (827)
                      ...+...                           ..+++.+...++.+++.|++|||   +++|+||||||+||+     
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~nili~~~~  161 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS---SHFFVHKDLAARNILIGEQL  161 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hcCeehhccccceEEEcCCC
Confidence            2222111                           12456667889999999999996   568999999999998     


Q ss_pred             -----eecccccccCCCc-cccccceecccccccccC
Q 047196          797 -----DFGIGRLLTGDRS-MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -----DFGla~~~~~~~~-~~~~~~~gt~~Y~APE~l  827 (827)
                           |||+++....... .......++..|+|||++
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05090         162 HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAI  198 (283)
T ss_pred             cEEeccccccccccCCcceecccCCCccceecChHHh
Confidence                 9999986543322 112223367789999973

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.72  E-value=2.8e-17  Score=178.37  Aligned_cols=143  Identities=24%  Similarity=0.283  Sum_probs=107.9

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||.||+|+.+ +++.||||++....   ....+.+.+|++++..+ +|||++++++++...+..++...+.. 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999865 68999999986532   22345678899998877 69999999999877765544332221 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...++......++.+++.||+|||   +++|+||||||+||+          |||+++........ ....
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~-~~~~  156 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT-TSTF  156 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCc-cccc
Confidence                     234566677789999999999995   678999999999998          99998754322211 2234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .||+.|||||++
T Consensus       157 ~gt~~y~aPE~~  168 (320)
T cd05590         157 CGTPDYIAPEIL  168 (320)
T ss_pred             ccCccccCHHHH
Confidence            589999999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.72  E-value=5e-17  Score=173.38  Aligned_cols=146  Identities=23%  Similarity=0.314  Sum_probs=111.8

Q ss_pred             ccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          677 FSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      |+..+.||+|+||+||+|+. .+++.||||++....   ....+.+.+|++++++++|++++++.+++..++...+...+
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            55678899999999999986 468999999986532   12234578899999999999999999888777655442222


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+.+.....++.|++.|+.|||   +++|+||||||+||+          |||+++....... 
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~-  157 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES-  157 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc-
Confidence            11            124667778899999999999995   678999999999988          9998876532221 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....|+..|+|||++
T Consensus       158 -~~~~~g~~~~~aPE~~  173 (285)
T cd05632         158 -IRGRVGTVGYMAPEVL  173 (285)
T ss_pred             -ccCCCCCcCccChHHh
Confidence             1234589999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.72  E-value=1.9e-17  Score=176.40  Aligned_cols=149  Identities=26%  Similarity=0.384  Sum_probs=110.2

Q ss_pred             cccccceEecCCceEEEEEEec------CCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      +|...+.||+|+||.||+|+..      ++..||||++..... ...+.|.+|++++++++|||||++++++.......+
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~   85 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSM   85 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEE
Confidence            4566788999999999999753      257899999875432 334678999999999999999999999876654433


Q ss_pred             eeeccC--------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------
Q 047196          749 DCLHST--------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------  796 (827)
Q Consensus       749 ~~l~~~--------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------  796 (827)
                      ...+..                          ...+.+.....++.++++|++|+|   +++|+||||||+||+      
T Consensus        86 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~  162 (283)
T cd05091          86 IFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFDKLN  162 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HcCccccccchhheEecCCCc
Confidence            211110                          123566677889999999999995   678999999999998      


Q ss_pred             ----eecccccccCCCccc-cccceecccccccccC
Q 047196          797 ----DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                          |||+++......... .....+++.|+|||++
T Consensus       163 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05091         163 VKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAI  198 (283)
T ss_pred             eEecccccccccccchheeeccCccCCccccCHHHH
Confidence                999988664332211 1222357899999963

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.72  E-value=5e-17  Score=170.98  Aligned_cols=150  Identities=27%  Similarity=0.439  Sum_probs=114.6

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .++|+..+.||+|+||.||+|...+++.||||.++... ...++|.+|++++++++|+|++++++++...+..++...+.
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELM   83 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecc
Confidence            35688889999999999999998777889999986543 23467899999999999999999999987766544422221


Q ss_pred             ------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 ------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                                  ....+++.....++.+++.|+.|||   +++|+||||||+||+          |||+++.........
T Consensus        84 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05068          84 KYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEA  160 (261)
T ss_pred             cCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccc
Confidence                        1124678888999999999999995   568999999999988          999998765332211


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++..|+|||++
T Consensus       161 ~~~~~~~~~y~aPE~~  176 (261)
T cd05068         161 REGAKFPIKWTAPEAA  176 (261)
T ss_pred             cCCCcCceeccCcccc
Confidence            1111234689999973

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.72  E-value=3.4e-17  Score=177.39  Aligned_cols=143  Identities=21%  Similarity=0.294  Sum_probs=106.9

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||.||+|+.+ +|+.||||+++...   ....+.+..|++++... +|++++++++++...+..++...+.. 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999875 68999999986532   12345567788888765 89999999999887775554332222 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...+++.....++.++++|++|||   +.+|+||||||+||+          |||+++....... .....
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~  156 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDN-RASTF  156 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCC-ceecc
Confidence                     124566677789999999999995   678999999999998          9999875322221 12234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||++|+|||++
T Consensus       157 ~gt~~y~aPE~~  168 (316)
T cd05620         157 CGTPDYIAPEIL  168 (316)
T ss_pred             CCCcCccCHHHH
Confidence            589999999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.72  E-value=3.3e-17  Score=173.97  Aligned_cols=152  Identities=25%  Similarity=0.368  Sum_probs=113.1

Q ss_pred             HhhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      ..++|+..+.||+|+||.||+|...      .++.||||++.... .....+|.+|+.++++++|+|+|++++++.....
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567899999999999999999753      25679999986432 3345678999999999999999999999877665


Q ss_pred             eeeeeeccCC--------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          746 KALDCLHSTN--------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       746 ~~l~~l~~~~--------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      .++...+...                    ...++.....++.++++|++|||   +++++||||||+||+         
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~vH~dlkp~Nil~~~~~~~~l  160 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKI  160 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCcchheEEEcCCCCEEE
Confidence            4442222111                    12356667889999999999996   578999999999998         


Q ss_pred             -eecccccccCCCccc-cccceecccccccccC
Q 047196          797 -DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                       |||+++......... .....+++.|||||++
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05062         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL  193 (277)
T ss_pred             CCCCCccccCCcceeecCCCCccCHhhcChhHh
Confidence             999987654322211 1122357889999974

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.72  E-value=3.9e-17  Score=172.32  Aligned_cols=150  Identities=24%  Similarity=0.401  Sum_probs=114.4

Q ss_pred             hcccccceEecCCceEEEEEEec----CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|+..+.||+|+||+||+|+++    +...||||+++... ....++|.+|+.++++++|+|++++++++...+..++.
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            56888899999999999999864    24579999986543 33456799999999999999999999998776655443


Q ss_pred             eeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          750 CLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       750 ~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ..+..           ...+.+.....++.+++.|++|||   +++|+||||||+||+          |||+++......
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~  160 (266)
T cd05033          84 TEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE  160 (266)
T ss_pred             EEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCCEEECccchhhcccccc
Confidence            22221           234677888899999999999995   678999999999998          999998775222


Q ss_pred             cccc-ccceecccccccccC
Q 047196          809 SMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~-~~~~gt~~Y~APE~l  827 (827)
                      .... ....++..|+|||++
T Consensus       161 ~~~~~~~~~~~~~y~~Pe~~  180 (266)
T cd05033         161 ATYTTKGGKIPIRWTAPEAI  180 (266)
T ss_pred             cceeccCCCCCccccChhhh
Confidence            2111 112246789999963

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.72  E-value=4e-17  Score=175.07  Aligned_cols=150  Identities=24%  Similarity=0.345  Sum_probs=113.3

Q ss_pred             hcccccceEecCCceEEEEEEecC-----------------CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEE
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-----------------GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKR  736 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-----------------g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~  736 (827)
                      ++|+..+.||+|+||.||+|+..+                 +..||+|++.... ....++|.+|++++++++|+|++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   84 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL   84 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            568888999999999999987532                 2468999987543 3456789999999999999999999


Q ss_pred             EeeeecCCceeeeeeccCC---------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCcce
Q 047196          737 ISSCSNEDFKALDCLHSTN---------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNV  795 (827)
Q Consensus       737 ~~~~~~~~~~~l~~l~~~~---------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NI  795 (827)
                      ++++..++..++...+...                     ..+.+.....++.+++.|++|||   +.+|+||||||+||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i~H~dlkp~Ni  161 (296)
T cd05051          85 LGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLATRNC  161 (296)
T ss_pred             EEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCccccccchhce
Confidence            9999876654443222111                     14567778899999999999996   56899999999998


Q ss_pred             e----------eecccccccCCCcc-ccccceecccccccccC
Q 047196          796 F----------DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       796 l----------DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                      +          |||+++........ ......+++.|||||++
T Consensus       162 li~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  204 (296)
T cd05051         162 LVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESV  204 (296)
T ss_pred             eecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHh
Confidence            8          99998765433221 11223367899999963

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.71  E-value=7.5e-18  Score=180.46  Aligned_cols=149  Identities=24%  Similarity=0.375  Sum_probs=114.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-eee--
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-KAL--  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-~~l--  748 (827)
                      ++|...+++|+|+||.++..+.+ ++..|++|++....  ....+...+|+.++++++|||||.+.+.+.+.+. ..+  
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            56788899999999999998754 57899999986543  3334567899999999999999999999887765 333  


Q ss_pred             eeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ++..++.          ..+...+......|+..|+.|||   +..|+|||||+.||+          |||+||.+..+.
T Consensus        84 ~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~  160 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPED  160 (426)
T ss_pred             eecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccCceeecchhhhhhcCCch
Confidence            3333221          11223344567788888888885   677999999999998          999999998776


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..+ .+.+||+.||.||++
T Consensus       161 ~~a-~tvvGTp~YmcPEil  178 (426)
T KOG0589|consen  161 SLA-STVVGTPYYMCPEIL  178 (426)
T ss_pred             hhh-heecCCCcccCHHHh
Confidence            443 336699999999974

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.71  E-value=4.3e-17  Score=177.39  Aligned_cols=143  Identities=28%  Similarity=0.314  Sum_probs=103.8

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHH-HHHHhcCCCCceEEEeeeecCCceeeeeeccCC
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAEC-EVMKNIRHRNHVKRISSCSNEDFKALDCLHSTN  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei-~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~  755 (827)
                      +.||+|+||.||+|+.. +++.||+|++....   .....++.+|. .+++.++|+|||++++++...+..++...+...
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            46999999999999865 57889999986532   12223444454 457889999999999998877755543333222


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          756 ----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       756 ----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                                ..+.......++.++++||+|||   +.+|+||||||+||+          |||+++....... .....
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~-~~~~~  156 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG-TTSTF  156 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCC-Ccccc
Confidence                      22444555678999999999995   678999999999998          9999976432222 12234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|||||++
T Consensus       157 ~gt~~y~aPE~~  168 (325)
T cd05602         157 CGTPEYLAPEVL  168 (325)
T ss_pred             cCCccccCHHHH
Confidence            589999999963

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.71  E-value=4.7e-17  Score=177.18  Aligned_cols=143  Identities=24%  Similarity=0.243  Sum_probs=108.9

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||+||+|+.. +++.||||++....   ....+.+.+|+.++.++ +|++++++++++...+..++...+.. 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999864 57899999997542   23345688999999988 59999999998877665444332221 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...+.+.....++.++++|++|||   +++|+||||||+||+          |||+++........ ....
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~-~~~~  156 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT-TSTF  156 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCc-eecc
Confidence                     234667778889999999999995   678999999999998          99998753222211 1234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|+|||++
T Consensus       157 ~gt~~y~aPE~~  168 (327)
T cd05617         157 CGTPNYIAPEIL  168 (327)
T ss_pred             cCCcccCCHHHH
Confidence            589999999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.71  E-value=3.5e-17  Score=174.50  Aligned_cols=150  Identities=29%  Similarity=0.426  Sum_probs=113.0

Q ss_pred             hcccccceEecCCceEEEEEEec-----CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ce-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-----DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FK-  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~-  746 (827)
                      .+|+..+.||+|+||.||+|+.+     +++.||||++........+.|.+|++++++++|||+|++.+++...+  .. 
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            35777889999999999999742     57899999987666666778999999999999999999999875432  22 


Q ss_pred             -eeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          747 -ALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       747 -~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                       .+++...         ....+.+.....++.+++.||+|||   +++|+||||||+||+          |||+++....
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~  160 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQ  160 (284)
T ss_pred             EEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHhhEEECCCCeEEECCCcccccccC
Confidence             2222211         1234677888899999999999995   678999999999998          9999987654


Q ss_pred             CCcccc--ccceecccccccccC
Q 047196          807 DRSMIQ--TETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~--~~~~gt~~Y~APE~l  827 (827)
                      ......  ....++..|+|||++
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~  183 (284)
T cd05081         161 DKEYYKVREPGESPIFWYAPESL  183 (284)
T ss_pred             CCcceeecCCCCCceEeeCHHHh
Confidence            332111  111235569999963

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.71  E-value=3.1e-17  Score=174.48  Aligned_cols=150  Identities=25%  Similarity=0.407  Sum_probs=110.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCc----EEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGI----EVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|+..+.||+|+||.||+|++. +|+    .||+|.+.... .....++..|+..+++++|||||++++++......++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i   86 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLV   86 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEE
Confidence            46777889999999999999863 444    47888875432 2344678889999999999999999999865543222


Q ss_pred             -eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       ++..         .....+++.....++.|++.|++|||   +++++||||||+||+          |||+++......
T Consensus        87 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~  163 (279)
T cd05111          87 TQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDD  163 (279)
T ss_pred             EEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEEcCCccceeccCCC
Confidence             2211         11234677788899999999999995   678999999999998          999998764332


Q ss_pred             ccc-cccceecccccccccC
Q 047196          809 SMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ... .....++.+|+|||++
T Consensus       164 ~~~~~~~~~~~~~y~~pE~~  183 (279)
T cd05111         164 KKYFYSEHKTPIKWMALESI  183 (279)
T ss_pred             cccccCCCCCcccccCHHHh
Confidence            211 1223367899999963

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.71  E-value=3.8e-17  Score=177.59  Aligned_cols=148  Identities=21%  Similarity=0.199  Sum_probs=109.5

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCC-CCceEEEeeeecCCceeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRH-RNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H-~niv~~~~~~~~~~~~~l~~  750 (827)
                      +|+..++||+|+||.||+|+.. +|+.||||++....   ....+.+..|+++++.+.| ++++++.+++...+..++..
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            3667789999999999999864 68999999987532   2234567889999998876 55667777776665544432


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+.+.+...++.+++.|++|||   +++|+||||||+||+          |||+++........
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~  157 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVT  157 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCcc
Confidence            2221          134677788899999999999996   678999999999997          99998764332221


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....||+.|||||++
T Consensus       158 -~~~~~gt~~y~aPE~~  173 (323)
T cd05615         158 -TRTFCGTPDYIAPEII  173 (323)
T ss_pred             -ccCccCCccccCHHHH
Confidence             1224589999999974

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.71  E-value=2.8e-17  Score=172.35  Aligned_cols=149  Identities=24%  Similarity=0.431  Sum_probs=113.6

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~  752 (827)
                      ++|...+.||+|+||.||+|+..++..||||.+.... ...++|.+|++++++++|||+++++++|...+..++  ++..
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMS   82 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc-ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCC
Confidence            4577788999999999999998777789999986543 234678999999999999999999999877664443  3221


Q ss_pred             c---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 S---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 ~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .         ....+.+.....++.+++.|++|||   +++|+||||||+||+          |||.++...........
T Consensus        83 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~  159 (256)
T cd05113          83 NGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSV  159 (256)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecC
Confidence            1         1224677888999999999999995   678999999999998          89988765433221111


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||++
T Consensus       160 ~~~~~~~y~~pe~~  173 (256)
T cd05113         160 GSKFPVRWSPPEVL  173 (256)
T ss_pred             CCccChhhCCHHHH
Confidence            22356789999963

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.71  E-value=1.7e-17  Score=190.39  Aligned_cols=152  Identities=21%  Similarity=0.265  Sum_probs=107.3

Q ss_pred             HhhcccccceEecCCceEEEEEEecC--CcEEEEEEEc-----------------ccchHHHHHHHHHHHHHHhcCCCCc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHD--GIEVAIKVFH-----------------QNCAMALKSFEAECEVMKNIRHRNH  733 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~--g~~vAvK~l~-----------------~~~~~~~~~~~~Ei~~l~~l~H~ni  733 (827)
                      ..++|+..+.||+|+||+||+|..+.  ++.+++|.+.                 .........+.+|++++++++|+||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            34679999999999999999987542  3333333110                 0111234568899999999999999


Q ss_pred             eEEEeeeecCCceeeeeeccC--------C------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---
Q 047196          734 VKRISSCSNEDFKALDCLHST--------N------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---  796 (827)
Q Consensus       734 v~~~~~~~~~~~~~l~~l~~~--------~------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---  796 (827)
                      |++++++...+..++......        .      ......+...|+.|++.||+|||   +++|+||||||+|||   
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH---~~gIiHrDLKP~NILl~~  302 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH---DKKLIHRDIKLENIFLNC  302 (501)
T ss_pred             CcEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECC
Confidence            999999987765544221110        0      11123345679999999999996   678999999999998   


Q ss_pred             -------eecccccccCCCccccccceecccccccccC
Q 047196          797 -------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                             |||+++.+...........+||+.|+|||++
T Consensus       303 ~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~  340 (501)
T PHA03210        303 DGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEIL  340 (501)
T ss_pred             CCCEEEEeCCCceecCcccccccccccCCcCCCCchhh
Confidence                   9999987754333222234589999999974

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.71  E-value=4.3e-17  Score=173.33  Aligned_cols=150  Identities=30%  Similarity=0.474  Sum_probs=112.2

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCc----EEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGI----EVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~----~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .+|+..++||+|+||.||+|++ .+|+    .||||++.... ....+++.+|+.+++.++|+|+++++++|.......+
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~   86 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLV   86 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEE
Confidence            5678889999999999999985 3454    48999986543 3445678999999999999999999999876543222


Q ss_pred             -eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       ++..         .....+.+...+.++.++++|++|||   +++|+||||||+||+          |||+++......
T Consensus        87 ~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~  163 (279)
T cd05109          87 TQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDE  163 (279)
T ss_pred             EEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCCCceeeccccc
Confidence             2221         11234677788899999999999995   678999999999998          999998765332


Q ss_pred             cccc-ccceecccccccccC
Q 047196          809 SMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~-~~~~gt~~Y~APE~l  827 (827)
                      .... ....+++.|+|||++
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~  183 (279)
T cd05109         164 TEYHADGGKVPIKWMALESI  183 (279)
T ss_pred             ceeecCCCccchhhCCHHHh
Confidence            2111 112246789999963

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.71  E-value=2.8e-17  Score=174.31  Aligned_cols=138  Identities=21%  Similarity=0.319  Sum_probs=102.5

Q ss_pred             eEecCCceEEEEEEecC-------------------------CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEE
Q 047196          682 LIGVGSFGSVYKGRLHD-------------------------GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR  736 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~~~-------------------------g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~  736 (827)
                      .||+|+||.||+|.+..                         ...||||++........++|.+|++++++++|||||++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            58999999999997421                         14589999865544445678999999999999999999


Q ss_pred             EeeeecCCceeeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          737 ISSCSNEDFKALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       737 ~~~~~~~~~~~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      +++|.+....++...+..           ...+.+..++.++.|+++|++|||   +++|+||||||+||+         
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~Nill~~~~~~~~  158 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLE---DKNLVHGNVCAKNILLARLGLAEG  158 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCCcccEEEeccCcccC
Confidence            999988776554332221           234567778899999999999995   678999999999998         


Q ss_pred             --------eecccccccCCCccccccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                              |||+++....     .....++..|+|||++
T Consensus       159 ~~~~~kl~d~g~~~~~~~-----~~~~~~~~~~~aPe~~  192 (274)
T cd05076         159 TSPFIKLSDPGVSFTALS-----REERVERIPWIAPECV  192 (274)
T ss_pred             ccceeeecCCcccccccc-----ccccccCCcccCchhh
Confidence                    3444322211     1123468889999964

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.71  E-value=6.8e-17  Score=170.50  Aligned_cols=149  Identities=23%  Similarity=0.329  Sum_probs=115.9

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|+..+.||+|+||.||+|+. .+|+.||+|++..........+.+|+.++++++|+|++++++++..++..++...+.
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            4688889999999999999986 568899999987554444567889999999999999999999988776555433322


Q ss_pred             C----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 T----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .          ...+++.+...++.++++|++|||   +.+|+|||+||+||+          |||+++........ ..
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~-~~  164 (267)
T cd06646          89 GGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAK-RK  164 (267)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEECcCccceeecccccc-cC
Confidence            2          224566677889999999999995   578999999999987          99998766432211 12


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...|++.|+|||++
T Consensus       165 ~~~~~~~y~~PE~~  178 (267)
T cd06646         165 SFIGTPYWMAPEVA  178 (267)
T ss_pred             ccccCccccCHhHc
Confidence            23588999999963

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-17  Score=179.72  Aligned_cols=150  Identities=31%  Similarity=0.548  Sum_probs=115.7

Q ss_pred             hcccccceEecCCceEEEEEEec---CC--cEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-cee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH---DG--IEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~---~g--~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~~  747 (827)
                      +.....++||+|.||.||+|.+.   .|  ..||||.-+.++ ....+.|.+|.-+|++++|||||+++|.|.+.. +..
T Consensus       389 e~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~Wiv  468 (974)
T KOG4257|consen  389 ELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIV  468 (974)
T ss_pred             hhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEE
Confidence            34455678999999999999863   23  348899887644 445678999999999999999999999998765 333


Q ss_pred             ee---------eeccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 LD---------CLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 l~---------~l~~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      |+         ++......++......++.|++.+|+||   ++.+.|||||...|||          |||++|-+.++.
T Consensus       469 mEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYL---eSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~  545 (974)
T KOG4257|consen  469 MELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYL---ESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDA  545 (974)
T ss_pred             EecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHH---HhhchhhhhhhhhheeecCcceeeecccchhhhccccc
Confidence            42         3333445677777788999999999999   5788999999999999          999999887654


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ....+...-.+.|||||-+
T Consensus       546 yYkaS~~kLPIKWmaPESI  564 (974)
T KOG4257|consen  546 YYKASRGKLPIKWMAPESI  564 (974)
T ss_pred             hhhccccccceeecCcccc
Confidence            4322211236789999964

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.71  E-value=5.8e-17  Score=170.69  Aligned_cols=149  Identities=31%  Similarity=0.507  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|...+.||+|+||.||+|... .++.||+|++.... ...+++.+|++++++++|+|++++++++..++..++...+.
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   84 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeC
Confidence            35777889999999999999864 58899999986543 34567899999999999999999999987766544322221


Q ss_pred             C------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 T------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .            ...+.+..+..++.++++|++|||   +.+|+||||||+||+          |||+++.........
T Consensus        85 ~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~  161 (263)
T cd05052          85 TYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTA  161 (263)
T ss_pred             CCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCcEEeCCCccccccccceeec
Confidence            1            124677788899999999999995   678999999999988          999988765432221


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++.+|+|||++
T Consensus       162 ~~~~~~~~~y~aPE~~  177 (263)
T cd05052         162 HAGAKFPIKWTAPESL  177 (263)
T ss_pred             cCCCCCccccCCHHHh
Confidence            1112246789999963

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.71  E-value=8.1e-17  Score=172.36  Aligned_cols=150  Identities=27%  Similarity=0.430  Sum_probs=115.2

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|...+.||+|+||.||+|+..      ++..||+|.+........+.+.+|++++++++|+|++++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            45777889999999999999742      356799999876655566789999999999999999999999987765544


Q ss_pred             eeeccC--------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------
Q 047196          749 DCLHST--------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------  796 (827)
Q Consensus       749 ~~l~~~--------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------  796 (827)
                      ...+..                          ...+++..+..++.+++.|++|||   +++|+||||||+||+      
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~~  161 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLL  161 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCc
Confidence            322221                          123677788999999999999995   678999999999997      


Q ss_pred             ----eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 ----DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                          |||+++........ ......++..|+|||++
T Consensus       162 ~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  197 (291)
T cd05094         162 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  197 (291)
T ss_pred             EEECCCCcccccCCCceeecCCCCCcceeecChHHh
Confidence                99998765432211 11223468899999963

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.71  E-value=8.9e-17  Score=171.45  Aligned_cols=146  Identities=21%  Similarity=0.333  Sum_probs=111.7

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      |+..++||+|+||.||+|... +++.||||.+....   ....+.+.+|+.++++++|++++++.+.+...+..++...+
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            667788999999999999864 68999999986432   22234678899999999999999999998877655443322


Q ss_pred             cCC------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 STN------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~~------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ...            ..+.......++.+++.|+.|||   +++|+||||||+||+          |||++.........
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  158 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI  158 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccc
Confidence            211            23556677889999999999995   678999999999987          99998765432221


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ....||..|||||++
T Consensus       159 --~~~~g~~~y~aPE~~  173 (285)
T cd05630         159 --KGRVGTVGYMAPEVV  173 (285)
T ss_pred             --cCCCCCccccChHHH
Confidence              223589999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.71  E-value=6.5e-17  Score=175.39  Aligned_cols=143  Identities=22%  Similarity=0.246  Sum_probs=108.8

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||+||+|+.+ +++.||||++....   ......+.+|+++++.+ +|||++++++++...+..++...+.. 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999875 57899999997542   22345678899999888 69999999999877765544333221 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...+.+.....++.+++.||+|||   +.+|+||||||+||+          |||+++........ ....
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-~~~~  156 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT-TSTF  156 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCc-ccce
Confidence                     224677778889999999999995   678999999999998          99998753222211 1224


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|||||++
T Consensus       157 ~g~~~y~aPE~~  168 (318)
T cd05570         157 CGTPDYIAPEIL  168 (318)
T ss_pred             ecCccccCHHHh
Confidence            589999999974

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.70  E-value=7.3e-17  Score=171.81  Aligned_cols=147  Identities=26%  Similarity=0.350  Sum_probs=115.3

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC-
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      |+..+.||+|+||.||+|+.. ++..+|+|.+........+.+.+|++++++++|+|++++++++......++...+.. 
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~   86 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG   86 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence            456678999999999999865 578899999876655666789999999999999999999999887765544332221 


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          755 ----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       755 ----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                                ...+.+.....++.++++||+|||   +.+|+||||||+||+          |||+++....... ....
T Consensus        87 ~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~  162 (282)
T cd06643          87 GAVDAVMLELERPLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ-RRDS  162 (282)
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEccCCCEEEcccccccccccccc-cccc
Confidence                      234677788899999999999996   578999999999997          9999876533221 1122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..+++.|+|||++
T Consensus       163 ~~~~~~y~aPE~~  175 (282)
T cd06643         163 FIGTPYWMAPEVV  175 (282)
T ss_pred             ccccccccCHhhc
Confidence            4589999999974

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.70  E-value=3.7e-17  Score=171.43  Aligned_cols=148  Identities=27%  Similarity=0.412  Sum_probs=111.9

Q ss_pred             cccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC-
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      +|+..+.||+|+||.||+|+.+++..+|||++..... ....|.+|++++++++|+|++++++++...+..++...+.. 
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMAN   83 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCC
Confidence            4677889999999999999987778899999864322 33568899999999999999999999877665544322211 


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          755 ----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       755 ----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                                ...+.+.....++.++++|++|||   +.+|+||||||+||+          |||+++............
T Consensus        84 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~  160 (256)
T cd05059          84 GCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQG  160 (256)
T ss_pred             CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHhhEEECCCCcEEECCcccceecccccccccCC
Confidence                      224567778899999999999995   678999999999987          999987654322111111


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..++..|+|||++
T Consensus       161 ~~~~~~y~~Pe~~  173 (256)
T cd05059         161 TKFPVKWAPPEVF  173 (256)
T ss_pred             CCCCccccCHHHh
Confidence            1245689999963

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>PTZ00284 protein kinase; Provisional

Probab=99.70  E-value=5.7e-17  Score=185.32  Aligned_cols=151  Identities=22%  Similarity=0.286  Sum_probs=106.9

Q ss_pred             HHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCC------ceEEEeeeec
Q 047196          670 LFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN------HVKRISSCSN  742 (827)
Q Consensus       670 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~~~~~~~~  742 (827)
                      +...+++|+..++||+|+||+||+|... +++.||||+++... ...+.+..|++++++++|.+      ++++.+++..
T Consensus       124 ~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~  202 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN  202 (467)
T ss_pred             cccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc
Confidence            3345678999999999999999999864 57899999986432 23445677888888887654      7788887765


Q ss_pred             CCc-eeeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------------
Q 047196          743 EDF-KALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------------  796 (827)
Q Consensus       743 ~~~-~~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------------  796 (827)
                      +.. .++.....         ....+.+.....|+.|+++||+|||.  +.+||||||||+|||                
T Consensus       203 ~~~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~--~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~  280 (467)
T PTZ00284        203 ETGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHT--ELHLMHTDLKPENILMETSDTVVDPVTNRAL  280 (467)
T ss_pred             CCceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh--cCCeecCCCCHHHEEEecCCccccccccccc
Confidence            432 22211111         12346677778899999999999973  358999999999987                


Q ss_pred             ----------eecccccccCCCccccccceecccccccccC
Q 047196          797 ----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                                |||.+....    ...+..+||++|||||++
T Consensus       281 ~~~~~~vkl~DfG~~~~~~----~~~~~~~gt~~Y~APE~~  317 (467)
T PTZ00284        281 PPDPCRVRICDLGGCCDER----HSRTAIVSTRHYRSPEVV  317 (467)
T ss_pred             CCCCceEEECCCCccccCc----cccccccCCccccCcHHh
Confidence                      455443211    112334689999999974

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.70  E-value=7.5e-17  Score=171.26  Aligned_cols=140  Identities=24%  Similarity=0.315  Sum_probs=106.5

Q ss_pred             EecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCC---
Q 047196          683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTN---  755 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~---  755 (827)
                      ||+|+||.||+++.+ +|+.||+|++.....   ...+.+..|++++++++|||++++.+++......++...+...   
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            699999999999864 689999999864321   1234566799999999999999999988777655443333221   


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          756 ---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       756 ---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                               ..+++.....++.+++.|++|||   +++|+||||||+||+          |||++........  .....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~--~~~~~  155 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT--ITQRA  155 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce--eeccC
Confidence                     23566677789999999999995   678999999999998          9999876643321  12235


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      ||..|+|||++
T Consensus       156 ~~~~y~aPE~~  166 (277)
T cd05607         156 GTNGYMAPEIL  166 (277)
T ss_pred             CCCCccCHHHH
Confidence            89999999973

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.70  E-value=7.7e-17  Score=168.28  Aligned_cols=144  Identities=28%  Similarity=0.425  Sum_probs=109.3

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC-----
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST-----  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-----  754 (827)
                      ++||+|+||.||+|...++..||+|++.... ......|.+|++++++++|+|++++++.|...+..++...+..     
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            3689999999999998888999999986543 3334578999999999999999999999987765444332221     


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccceec
Q 047196          755 ------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVT  818 (827)
Q Consensus       755 ------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt  818 (827)
                            ...+++.....++.++++++.|+|   +++++||||||+||+          |||+++..............++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~  157 (250)
T cd05085          81 SFLRKKKDELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIP  157 (250)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCc
Confidence                  224567788899999999999995   678999999999988          9998875432221111112246


Q ss_pred             ccccccccC
Q 047196          819 IGYMAPGLL  827 (827)
Q Consensus       819 ~~Y~APE~l  827 (827)
                      +.|+|||++
T Consensus       158 ~~y~aPE~~  166 (250)
T cd05085         158 IKWTAPEAL  166 (250)
T ss_pred             ccccCHHHh
Confidence            789999973

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.70  E-value=9e-17  Score=171.17  Aligned_cols=150  Identities=31%  Similarity=0.519  Sum_probs=112.0

Q ss_pred             hcccccceEecCCceEEEEEEecC------CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD------GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|+..+.||+|+||.||+|....      ...||+|.+.... ....++|.+|++++++++|||++++++++......+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            467778899999999999998542      2579999986543 334567999999999999999999999987765443


Q ss_pred             eeeeccCC--------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----
Q 047196          748 LDCLHSTN--------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----  796 (827)
Q Consensus       748 l~~l~~~~--------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----  796 (827)
                      +...+...                          ..+++.....++.++++|++|||   +.+|+||||||+||+     
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nil~~~~~  161 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGL  161 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccccceEEEcCCC
Confidence            32221111                          23556667889999999999995   568999999999997     


Q ss_pred             -----eecccccccCCCc-cccccceecccccccccC
Q 047196          797 -----DFGIGRLLTGDRS-MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -----DFGla~~~~~~~~-~~~~~~~gt~~Y~APE~l  827 (827)
                           |||+++....... .......+++.|||||++
T Consensus       162 ~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05048         162 TVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAI  198 (283)
T ss_pred             cEEECCCcceeeccccccccccCCCcccccccCHHHh
Confidence                 9999876533221 112223468899999963

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.70  E-value=7.1e-17  Score=190.73  Aligned_cols=154  Identities=23%  Similarity=0.332  Sum_probs=115.0

Q ss_pred             HHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--c-
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--F-  745 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~-  745 (827)
                      ....+|...+.||+|+||.||+|+.. ++..||+|++...  .......|.+|+.++++++|||||++++++....  . 
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            34567999999999999999999864 5788999998643  2334567899999999999999999999875432  2 


Q ss_pred             -eeeeeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcC----CCCeEEccCCCccee------------
Q 047196          746 -KALDCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSH----STPVIHCDLKPKNVF------------  796 (827)
Q Consensus       746 -~~l~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h----~~~iiHrDlK~~NIl------------  796 (827)
                       .+++++...            ...+.+.....|+.||+.||+|||...    .++||||||||+|||            
T Consensus        90 yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~  169 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKIT  169 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccccc
Confidence             223333211            134667778899999999999998643    257999999999986            


Q ss_pred             ---------------eecccccccCCCccccccceecccccccccC
Q 047196          797 ---------------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---------------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                                     |||+++.+.....  ....+||+.|+|||++
T Consensus       170 ~~~~n~ng~~iVKLsDFGlAr~l~~~s~--~~s~vGTp~YmAPEvL  213 (1021)
T PTZ00266        170 AQANNLNGRPIAKIGDFGLSKNIGIESM--AHSCVGTPYYWSPELL  213 (1021)
T ss_pred             ccccccCCCCceEEccCCcccccccccc--ccccCCCccccCHHHH
Confidence                           6777765532211  1234589999999974

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.70  E-value=5.5e-17  Score=170.53  Aligned_cols=148  Identities=25%  Similarity=0.459  Sum_probs=112.1

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l~~  753 (827)
                      ++|+..+.||+|+||.||+|...++..||+|.+..... ..+.|.+|++++++++|++++++++++.+.... .+++...
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~   84 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSK   84 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCC
Confidence            46777889999999999999988888899999865432 345789999999999999999999987554322 2222211


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 ----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                ....+++.++..++.+++.|++|||   +++|+||||||+||+          |||+++.+.........
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~  161 (260)
T cd05070          85 GSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQ  161 (260)
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEEeCCceEEeCCceeeeeccCccccccc
Confidence                      1224677888999999999999996   567999999999987          99998776433222112


Q ss_pred             cceeccccccccc
Q 047196          814 ETLVTIGYMAPGL  826 (827)
Q Consensus       814 ~~~gt~~Y~APE~  826 (827)
                      ...++..|+|||+
T Consensus       162 ~~~~~~~y~aPE~  174 (260)
T cd05070         162 GAKFPIKWTAPEA  174 (260)
T ss_pred             CCCCCccccChHH
Confidence            2235678999996

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.70  E-value=6.8e-17  Score=171.77  Aligned_cols=150  Identities=29%  Similarity=0.452  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|...+.||+|+||.||+|+..      +++.||||++...... ..+.|.+|++++++++|+|++++++++......+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            45777889999999999999763      2478999998754333 4578999999999999999999999998776554


Q ss_pred             eeeeccC------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          748 LDCLHST------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       748 l~~l~~~------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                      +...+..                        ...+.+.+...++.+++.|++|||   +.+|+||||||+||+       
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~  161 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYDLVV  161 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCCCeE
Confidence            4332211                        123566677889999999999995   678999999999997       


Q ss_pred             ---eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                         |||+++........ ......+++.|+|||++
T Consensus       162 kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (280)
T cd05049         162 KIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESI  196 (280)
T ss_pred             EECCcccceecccCcceecCCCCcccceecChhhh
Confidence               99998765332211 11223367889999974

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.70  E-value=7.9e-17  Score=179.26  Aligned_cols=150  Identities=24%  Similarity=0.459  Sum_probs=111.0

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~  746 (827)
                      ++|...+.||+|+||.||+|+++      .++.||||++.... ....+.+.+|++++.++. |||||+++++|......
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~  116 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPI  116 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCc
Confidence            45777889999999999999853      24689999997543 233457899999999997 99999999999776543


Q ss_pred             ee--eeeccC----------------------------------------------------------------------
Q 047196          747 AL--DCLHST----------------------------------------------------------------------  754 (827)
Q Consensus       747 ~l--~~l~~~----------------------------------------------------------------------  754 (827)
                      ++  ++....                                                                      
T Consensus       117 ~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (401)
T cd05107         117 YIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMK  196 (401)
T ss_pred             EEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcch
Confidence            32  221100                                                                      


Q ss_pred             ------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          755 ------------------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       755 ------------------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                                                          ...+++.+...++.+++.|++|||   +++|+||||||+||+  
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlkp~NiLl~  273 (401)
T cd05107         197 GTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLAARNVLIC  273 (401)
T ss_pred             hhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCCcceEEEe
Confidence                                                012455667789999999999995   678999999999998  


Q ss_pred             --------eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                              |||+++........ ......++..|||||++
T Consensus       274 ~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~  313 (401)
T cd05107         274 EGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESI  313 (401)
T ss_pred             CCCEEEEEecCcceecccccccccCCCcCCCCceeChHHh
Confidence                    99999865433221 11223468899999964

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.70  E-value=9.4e-17  Score=169.71  Aligned_cols=144  Identities=21%  Similarity=0.321  Sum_probs=105.4

Q ss_pred             ceEecCCceEEEEEEecC---CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCCC
Q 047196          681 NLIGVGSFGSVYKGRLHD---GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNC  756 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~---g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~~  756 (827)
                      +.||+|+||.||+|+..+   +..+|+|+++... ......|.+|++++++++|||++++++++.+....++...+...+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            358999999999998643   4679999986543 233457899999999999999999999987766544433222211


Q ss_pred             ---------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-
Q 047196          757 ---------------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-  810 (827)
Q Consensus       757 ---------------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-  810 (827)
                                     ..++.....++.+++.|++|||   +.+|+||||||+||+          |||+++........ 
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~  157 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYV  157 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEECCccccccccCcceee
Confidence                           2234455678899999999995   678999999999998          99998764332211 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      ......++..|+|||++
T Consensus       158 ~~~~~~~~~~y~aPE~~  174 (269)
T cd05087         158 TPDQLWVPLRWIAPELV  174 (269)
T ss_pred             cCCCcCCcccccCHhHh
Confidence            11223468899999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.70  E-value=5.5e-17  Score=177.90  Aligned_cols=150  Identities=23%  Similarity=0.421  Sum_probs=109.6

Q ss_pred             hcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~  746 (827)
                      ++|+..+.||+|+||.||+|..      .+++.||||+++... ....+.+.+|++++.++ +|+|+|+++++|...+..
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   86 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence            5688899999999999999973      347889999997543 33456788999999999 689999999988654321


Q ss_pred             ---eeeeeccC---------------------------------------------------------------------
Q 047196          747 ---ALDCLHST---------------------------------------------------------------------  754 (827)
Q Consensus       747 ---~l~~l~~~---------------------------------------------------------------------  754 (827)
                         ++++....                                                                     
T Consensus        87 ~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
T cd05103          87 LMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA  166 (343)
T ss_pred             eEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhh
Confidence               22221100                                                                     


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc-ccee
Q 047196          755 ------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT-ETLV  817 (827)
Q Consensus       755 ------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~-~~~g  817 (827)
                            ...+++.+...++.++++|++|||   +++|+||||||+||+          |||+++....+...... ...+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  243 (343)
T cd05103         167 EQEDLYKKVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARL  243 (343)
T ss_pred             hhhhhhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCC
Confidence                  012456667789999999999995   679999999999998          99998875433221111 1225


Q ss_pred             cccccccccC
Q 047196          818 TIGYMAPGLL  827 (827)
Q Consensus       818 t~~Y~APE~l  827 (827)
                      +..|+|||++
T Consensus       244 ~~~y~aPE~~  253 (343)
T cd05103         244 PLKWMAPETI  253 (343)
T ss_pred             CcceECcHHh
Confidence            6789999963

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.70  E-value=3.8e-17  Score=171.81  Aligned_cols=151  Identities=25%  Similarity=0.479  Sum_probs=119.4

Q ss_pred             HhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +..+|+..+.||+|+||.||+|...+++.||+|++..........+.+|++++++++|+|++++++++...+..++...+
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   83 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITEL   83 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEee
Confidence            44678888999999999999999888999999999776555567799999999999999999999998877655443322


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+++.+...++.+++.|++|||   +++|+||||||+||+          |||+++........
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~  160 (261)
T cd05148          84 MEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYL  160 (261)
T ss_pred             cccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccCcceEEEcCCceEEEccccchhhcCCcccc
Confidence            21            234677788899999999999995   678999999999998          99998776433221


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....++..|+|||++
T Consensus       161 -~~~~~~~~~~~~PE~~  176 (261)
T cd05148         161 -SSDKKIPYKWTAPEAA  176 (261)
T ss_pred             -ccCCCCceEecCHHHH
Confidence             1222357789999963

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.70  E-value=6.2e-17  Score=174.17  Aligned_cols=148  Identities=27%  Similarity=0.391  Sum_probs=113.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|...+.||+|+||.||+|+.+ +++.||+|.+.... ......+.+|++++++++|+||+++++++..++..++...+
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            56888899999999999999865 68899999986432 22334678899999999999999999999877655443222


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ....+.+.....++.++++|++|||   +.+|+||||||+||+          |||+++........ .
T Consensus        86 ~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~-~  161 (301)
T cd07873          86 LDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT-Y  161 (301)
T ss_pred             cccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCc-c
Confidence            1          1233566677789999999999995   678999999999998          99998765332221 1


Q ss_pred             ccceeccccccccc
Q 047196          813 TETLVTIGYMAPGL  826 (827)
Q Consensus       813 ~~~~gt~~Y~APE~  826 (827)
                      ....+++.|+|||+
T Consensus       162 ~~~~~~~~y~~PE~  175 (301)
T cd07873         162 SNEVVTLWYRPPDI  175 (301)
T ss_pred             cccceeecccCcHH
Confidence            22347899999996

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.70  E-value=7.3e-17  Score=169.61  Aligned_cols=149  Identities=24%  Similarity=0.456  Sum_probs=112.7

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l~~  753 (827)
                      ++|+..++||+|+||.||+|..++++.||||++..... ..+.|.+|++++++++|+|++++.+++...... .+++...
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~   84 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMEN   84 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCC
Confidence            56778899999999999999988889999999875432 346789999999999999999999887543322 1222211


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 ----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                ....+.+.+...++.+++.|++|||   +.+++||||||+||+          |||+++...........
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~  161 (260)
T cd05067          85 GSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTARE  161 (260)
T ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCccccc
Confidence                      1234567778889999999999995   678999999999988          99998776532222222


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||++
T Consensus       162 ~~~~~~~y~~pe~~  175 (260)
T cd05067         162 GAKFPIKWTAPEAI  175 (260)
T ss_pred             CCcccccccCHHHh
Confidence            23357789999963

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.70  E-value=7.4e-17  Score=173.03  Aligned_cols=150  Identities=25%  Similarity=0.396  Sum_probs=111.5

Q ss_pred             hcccccceEecCCceEEEEEEecC---------------CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEe
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD---------------GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRIS  738 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~---------------g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~  738 (827)
                      ++|+..+.||+|+||.||+|+..+               ...||||+++... ......|.+|++++++++|+|++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            467888999999999999987532               2358999986542 334567999999999999999999999


Q ss_pred             eeecCCceeeeeeccCC----------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          739 SCSNEDFKALDCLHSTN----------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       739 ~~~~~~~~~l~~l~~~~----------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                      ++......++...+...                      ..+.+...+.++.++++|++|||   +.+++||||||+||+
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil  161 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLNFVHRDLATRNCL  161 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcCeeccccChhhEE
Confidence            99776655443322211                      12466777889999999999995   678999999999998


Q ss_pred             ----------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 ----------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                                |||+++......... .....++..|+|||++
T Consensus       162 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  203 (295)
T cd05097         162 VGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESI  203 (295)
T ss_pred             EcCCCcEEecccccccccccCcceeccCcCcCceeecChhhh
Confidence                      999987654322211 1122357789999963

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.70  E-value=1.1e-16  Score=172.60  Aligned_cols=151  Identities=26%  Similarity=0.444  Sum_probs=112.5

Q ss_pred             hhcccccceEecCCceEEEEEEec--------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecC
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH--------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNE  743 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~  743 (827)
                      .++|...+.||+|+||.||+|+..        ++..||+|.+.... ....+++.+|+++++.+ +|+|++++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            456788899999999999999741        24579999986532 34457799999999999 899999999998876


Q ss_pred             CceeeeeeccCC--------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          744 DFKALDCLHSTN--------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       744 ~~~~l~~l~~~~--------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                      ...++...+...                          ..+.+.+...++.++++|++|||   +.+|+||||||+||+ 
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nili  170 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARNVLV  170 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---HCCeeecccccceEEE
Confidence            654442222111                          13456677889999999999995   668999999999988 


Q ss_pred             ---------eecccccccCCCcccc-ccceecccccccccC
Q 047196          797 ---------DFGIGRLLTGDRSMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---------DFGla~~~~~~~~~~~-~~~~gt~~Y~APE~l  827 (827)
                               |||+++.......... ....+++.|+|||++
T Consensus       171 ~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  211 (304)
T cd05101         171 TENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEAL  211 (304)
T ss_pred             cCCCcEEECCCccceecccccccccccCCCCCceeeCchhh
Confidence                     9999987643322211 112357789999963

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.70  E-value=7.6e-17  Score=175.87  Aligned_cols=141  Identities=24%  Similarity=0.264  Sum_probs=104.3

Q ss_pred             EecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc---CCCCceEEEeeeecCCceeeeeeccC-
Q 047196          683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI---RHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l---~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ||+|+||+||+|+.. +|+.||||++....   ......+..|..++.+.   +||+++++.+++...+..++...+.. 
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            699999999999864 68999999986432   12234456677777766   69999999998877765544332221 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 ---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                               ...+.......++.|+++|++|||   +++|+||||||+||+          |||+++........ ....
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~-~~~~  156 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT-TNTF  156 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCC-ccCc
Confidence                     234566677789999999999995   678999999999998          99998764322221 2234


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      +||+.|||||++
T Consensus       157 ~gt~~y~aPE~~  168 (330)
T cd05586         157 CGTTEYLAPEVL  168 (330)
T ss_pred             cCCccccCHHHH
Confidence            589999999964

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.70  E-value=8.9e-17  Score=169.96  Aligned_cols=150  Identities=27%  Similarity=0.430  Sum_probs=112.0

Q ss_pred             hcccccceEecCCceEEEEEEecC----CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-e
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD----GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-L  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-l  748 (827)
                      .+|...+.||+|+||.||+|...+    ...||||...... ....+.+.+|++++++++|+|++++++++......+ +
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~   85 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVM   85 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEE
Confidence            346777899999999999998643    2469999886554 445678999999999999999999999887654322 2


Q ss_pred             eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          749 DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 ~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ++...         ....+++..+..++.++++|++|||   +.+++||||||+||+          |||+++.......
T Consensus        86 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  162 (270)
T cd05056          86 ELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESY  162 (270)
T ss_pred             EcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccChheEEEecCCCeEEccCceeeecccccc
Confidence            22211         1224677888899999999999995   678999999999998          9999887654422


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ...+...++..|+|||++
T Consensus       163 ~~~~~~~~~~~y~aPE~~  180 (270)
T cd05056         163 YKASKGKLPIKWMAPESI  180 (270)
T ss_pred             eecCCCCccccccChhhh
Confidence            212222245789999963

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.70  E-value=8e-17  Score=170.24  Aligned_cols=142  Identities=23%  Similarity=0.280  Sum_probs=103.3

Q ss_pred             eEecCCceEEEEEEecC---CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCCC-
Q 047196          682 LIGVGSFGSVYKGRLHD---GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNC-  756 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~~~---g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~~-  756 (827)
                      .||+|+||.||+|+..+   ...||+|.+.... ......|.+|+++++.++|+||+++++++......++...+...+ 
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999997543   3568899875433 334567899999999999999999999998776554433222211 


Q ss_pred             --------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-c
Q 047196          757 --------------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-I  811 (827)
Q Consensus       757 --------------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-~  811 (827)
                                    ...+.....++.|++.|++|||   +.+|+||||||+||+          |||+++........ .
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~  158 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYIT  158 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHH---hcCEecccccHhheEecCCCcEEEeccccccccccchheec
Confidence                          1234456789999999999995   678999999999987          99998754332211 1


Q ss_pred             cccceeccccccccc
Q 047196          812 QTETLVTIGYMAPGL  826 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~  826 (827)
                      .....+++.|+|||+
T Consensus       159 ~~~~~~~~~y~aPE~  173 (269)
T cd05042         159 KDCHAVPLRWLAPEL  173 (269)
T ss_pred             cCCCCCcccccCHHH
Confidence            122235778999996

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=2.3e-17  Score=175.89  Aligned_cols=149  Identities=19%  Similarity=0.288  Sum_probs=119.6

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcc--cchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQ--NCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~--~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ..|+..+.||+||.++||++...+.+.||+|++..  .+.+....|..|++.|.+++ |.+||++++|-..+.+.+|...
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            35777899999999999999988888899988643  34556788999999999996 8999999999988887776544


Q ss_pred             ccC----------CCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccccCCCcc-
Q 047196          752 HST----------NCS-LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLTGDRSM-  810 (827)
Q Consensus       752 ~~~----------~~~-l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~~~~~~-  810 (827)
                      .+.          ... .+| .+..+..++.+++.++   |+.+|||.||||.|.|         |||+|+.+..+... 
T Consensus       441 ~Gd~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~I---H~~gIVHSDLKPANFLlVkG~LKLIDFGIA~aI~~DTTsI  516 (677)
T KOG0596|consen  441 CGDIDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTI---HQHGIVHSDLKPANFLLVKGRLKLIDFGIANAIQPDTTSI  516 (677)
T ss_pred             cccccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHH---HHhceeecCCCcccEEEEeeeEEeeeechhcccCccccce
Confidence            332          122 234 5567888998898888   5789999999999976         99999998776654 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      ...+.+||+.||+||.+
T Consensus       517 ~kdsQvGT~NYMsPEAl  533 (677)
T KOG0596|consen  517 VKDSQVGTVNYMSPEAL  533 (677)
T ss_pred             eeccccCcccccCHHHH
Confidence            34567899999999964

>PLN03150 hypothetical protein; Provisional

Probab=99.70  E-value=9.3e-17  Score=187.54  Aligned_cols=154  Identities=26%  Similarity=0.440  Sum_probs=129.0

Q ss_pred             ccCCCHHHHHHHHHHHhhcCCCCCCcCCCCCCCCCCCC----cccceecCCC--C--CcEEEEEcCCCCCccccCccccC
Q 047196           49 AASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVC----NWIGITCNVN--S--HRVTALNISSLNLQGTIPPQLGN  120 (827)
Q Consensus        49 ~~~~~~~~~~aLl~~k~~~~~~~~~~l~~w~~~~~~~C----~W~gv~C~~~--~--~~v~~L~L~~~~l~g~~~~~l~~  120 (827)
                      .+.+.+.|.+||+++|+++. ++..  .+|.  +..||    .|.||.|+..  .  .+|+.|+|+++++.|.+|+.++.
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~-~~~~--~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~  440 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLG-LPLR--FGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK  440 (623)
T ss_pred             ccccCchHHHHHHHHHHhcC-Cccc--CCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhC
Confidence            34567789999999999983 4432  3675  33342    7999999532  2  25999999999999999999999


Q ss_pred             CCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEE
Q 047196          121 LSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVL  200 (827)
Q Consensus       121 L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L  200 (827)
                      +++|+.|+|++|.++|.+|+.++.+++|++|||++|+++|.+|..+.++++|++|+|++|+++|.+|..+.....++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877654456667


Q ss_pred             Eeecccc
Q 047196          201 FLAKNMF  207 (827)
Q Consensus       201 ~Ls~N~l  207 (827)
                      ++.+|..
T Consensus       521 ~~~~N~~  527 (623)
T PLN03150        521 NFTDNAG  527 (623)
T ss_pred             EecCCcc
Confidence            7776653

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.69  E-value=7.7e-17  Score=169.69  Aligned_cols=149  Identities=26%  Similarity=0.441  Sum_probs=111.5

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-eeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-KALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-~~l~~l~~  753 (827)
                      ++|...++||+|+||.||+|+..++..||+|++..... ..++|.+|++++++++|+|++++++.+.+... ..++++..
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~   84 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSK   84 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCC
Confidence            56888899999999999999887767899999875322 34578999999999999999999988754332 22222221


Q ss_pred             C----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 T----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .          ...+++.....++.++++||+|+|   +.+|+||||||+||+          |||.++...........
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~  161 (262)
T cd05071          85 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ  161 (262)
T ss_pred             CcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCCcEEeccCCceeecccccccccc
Confidence            1          123567778889999999999995   678999999999987          99998766433222212


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||+.
T Consensus       162 ~~~~~~~y~~PE~~  175 (262)
T cd05071         162 GAKFPIKWTAPEAA  175 (262)
T ss_pred             CCcccceecCHhHh
Confidence            23367789999963

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.69  E-value=9.1e-17  Score=169.56  Aligned_cols=149  Identities=28%  Similarity=0.341  Sum_probs=116.0

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      ++|...+.||+|+||.||+|+. .+++.||+|+++.........+.+|+.+++.++|||++++++++...+..++...+.
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            4677788899999999999986 468999999987654445567889999999999999999999988776555433222


Q ss_pred             C----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 T----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .          ...++..+...++.+++.|+.|||   +.+|+||||||+||+          |||+++....... ...
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~-~~~  164 (267)
T cd06645          89 GGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLH---SKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIA-KRK  164 (267)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECcceeeeEccCccc-ccc
Confidence            1          234566777889999999999996   568999999999997          9999876543221 112


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...|+..|+|||++
T Consensus       165 ~~~~~~~y~aPE~~  178 (267)
T cd06645         165 SFIGTPYWMAPEVA  178 (267)
T ss_pred             cccCcccccChhhh
Confidence            34589999999973

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.69  E-value=9.9e-17  Score=168.33  Aligned_cols=141  Identities=26%  Similarity=0.480  Sum_probs=104.8

Q ss_pred             EecCCceEEEEEEec---CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeeecc----
Q 047196          683 IGVGSFGSVYKGRLH---DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCLHS----  753 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l~~----  753 (827)
                      ||+|+||.||+|.+.   ++..||||++.... ....++|.+|++++++++|+|+++++++|...... .+++...    
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L~   82 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPLN   82 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCHH
Confidence            899999999999753   35679999986543 33456799999999999999999999988654322 2222211    


Q ss_pred             -----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc--ccce
Q 047196          754 -----TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ--TETL  816 (827)
Q Consensus       754 -----~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~--~~~~  816 (827)
                           ....+++.+...++.++++|++|||   +.+|+||||||+||+          |||+++....+.....  +...
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  159 (257)
T cd05115          83 KFLSGKKDEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGK  159 (257)
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCC
Confidence                 1234677788899999999999995   568999999999997          9999886644332211  1112


Q ss_pred             eccccccccc
Q 047196          817 VTIGYMAPGL  826 (827)
Q Consensus       817 gt~~Y~APE~  826 (827)
                      ++..|+|||+
T Consensus       160 ~~~~y~aPE~  169 (257)
T cd05115         160 WPLKWYAPEC  169 (257)
T ss_pred             CCcccCCHHH
Confidence            3678999996

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.69  E-value=5.5e-18  Score=196.44  Aligned_cols=152  Identities=24%  Similarity=0.374  Sum_probs=111.9

Q ss_pred             HhhcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce--e
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK--A  747 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~--~  747 (827)
                      .+-++....+||.|.||.||-|. ..+|+..|||.+....  ....+...+|+.++..++|||+|+++|.-...+..  +
T Consensus      1233 V~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IF 1312 (1509)
T KOG4645|consen 1233 VTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIF 1312 (1509)
T ss_pred             ceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHH
Confidence            34467778899999999999997 5679999999875432  33446678999999999999999999987665433  3


Q ss_pred             eeeeccCC--------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          748 LDCLHSTN--------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       748 l~~l~~~~--------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      |+++..+.        ...+..--..+..|++.|++|||   +.+||||||||+||+          |||.|..+.....
T Consensus      1313 MEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~ 1389 (1509)
T KOG4645|consen 1313 MEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQ 1389 (1509)
T ss_pred             HHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH---hcCceecCCCccceeeecCCcEEeecccceeEecCchh
Confidence            34433221        11122222346678999999995   678999999999998          9999988765432


Q ss_pred             cc---cccceecccccccccC
Q 047196          810 MI---QTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~---~~~~~gt~~Y~APE~l  827 (827)
                      ..   ....+||+.|||||+|
T Consensus      1390 ~~~~el~~~~GT~~YMAPEvi 1410 (1509)
T KOG4645|consen 1390 TMPGELQSMMGTPMYMAPEVI 1410 (1509)
T ss_pred             cCCHHHHhhcCCchhcCchhh
Confidence            21   2235699999999986

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.69  E-value=1.3e-16  Score=168.75  Aligned_cols=147  Identities=27%  Similarity=0.405  Sum_probs=106.8

Q ss_pred             cccceEecCCceEEEEEEecC-Cc--EEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--------
Q 047196          678 SKENLIGVGSFGSVYKGRLHD-GI--EVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--------  744 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~~~-g~--~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--------  744 (827)
                      ...++||+|+||.||+|++.+ +.  .||||.++..  .....+.|.+|++++++++|+|+++++++|....        
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            346789999999999998754 33  5999988643  2344678999999999999999999999875421        


Q ss_pred             ceeeeeeccC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecc
Q 047196          745 FKALDCLHST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI  800 (827)
Q Consensus       745 ~~~l~~l~~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGl  800 (827)
                      ...+++....              ...+++.....++.++++|++|||   +++|+||||||+||+          |||+
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  158 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGL  158 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhheEEcCCCCEEECCCCc
Confidence            1222322211              123567777889999999999996   578999999999998          9999


Q ss_pred             cccccCCCccc-cccceecccccccccC
Q 047196          801 GRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ++......... .....+++.|+|||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~  186 (272)
T cd05075         159 SKKIYNGDYYRQGRIAKMPVKWIAIESL  186 (272)
T ss_pred             ccccCcccceecCCcccCCcccCCHHHc
Confidence            98764332211 1112256789999973

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.69  E-value=1.2e-16  Score=167.09  Aligned_cols=144  Identities=27%  Similarity=0.457  Sum_probs=107.3

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeecc---
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLHS---  753 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~~---  753 (827)
                      +.||+|+||.||+|+.. +++.||+|...... ......|.+|++++++++|+|+++++++|......++  ++...   
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            36899999999999864 68999999876432 3445679999999999999999999999977665444  22211   


Q ss_pred             ------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc-cce
Q 047196          754 ------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT-ETL  816 (827)
Q Consensus       754 ------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~-~~~  816 (827)
                            ....+.+.+...++.++++||+|||   +.+|+||||||+||+          |||+++........... ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  157 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQ  157 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCC
Confidence                  1224677778889999999999995   678999999999998          89998764322111100 011


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      ++..|+|||++
T Consensus       158 ~~~~y~aPE~~  168 (252)
T cd05084         158 IPVKWTAPEAL  168 (252)
T ss_pred             CceeecCchhh
Confidence            34579999964

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.69  E-value=1.3e-16  Score=168.25  Aligned_cols=149  Identities=28%  Similarity=0.395  Sum_probs=113.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||.||+|+.. +++.||||++...   .....+.+.+|++++++++|||++++++++...+...+..
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            46888899999999999999864 6899999987532   2344567899999999999999999999987766544432


Q ss_pred             eccCC--------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          751 LHSTN--------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       751 l~~~~--------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+...              ..+.......++.++++|++|||   +.+|+||||||+||+          |||+++....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCCHHHEEEcCCCCEEECccccceeccc
Confidence            22211              22455566789999999999995   678999999999998          9998876643


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... .....|++.|+|||++
T Consensus       159 ~~~~-~~~~~~~~~~~aPE~~  178 (267)
T cd08228         159 KTTA-AHSLVGTPYYMSPERI  178 (267)
T ss_pred             hhHH-HhcCCCCccccChhhh
Confidence            3221 1123478899999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.69  E-value=1e-16  Score=171.53  Aligned_cols=151  Identities=26%  Similarity=0.427  Sum_probs=113.8

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--  748 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--  748 (827)
                      ++++|...+.||+|+||.||+|.. .+|+.||||++..... .....+.+|++++++++|+|++++.+++..++..++  
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            457888999999999999999986 4688999999865432 223467889999999999999999999887665443  


Q ss_pred             eeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          749 DCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       749 ~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ++...        ....+.+.....++.+++.||+|||   +.+|+||||||+||+          |||+++........
T Consensus        83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  159 (291)
T cd07870          83 EYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQT  159 (291)
T ss_pred             ecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCC
Confidence            22211        1123456667789999999999995   568999999999998          99998764332211


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....+++.|+|||++
T Consensus       160 -~~~~~~~~~y~aPE~~  175 (291)
T cd07870         160 -YSSEVVTLWYRPPDVL  175 (291)
T ss_pred             -CCCccccccccCCcee
Confidence             1223478999999973

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.69  E-value=1.4e-16  Score=169.38  Aligned_cols=151  Identities=21%  Similarity=0.308  Sum_probs=113.3

Q ss_pred             hhcccccceEecCCceEEEEEEecC-----CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-ce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHD-----GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~  746 (827)
                      .++|...++||+|+||.||+|...+     +..||+|++.... ....+.+.+|++++++++|+|++++++++.... ..
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            4678888999999999999998754     6889999986542 344577899999999999999999999987632 22


Q ss_pred             eeeeecc-----------C--C-----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------ee
Q 047196          747 ALDCLHS-----------T--N-----CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF  798 (827)
Q Consensus       747 ~l~~l~~-----------~--~-----~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DF  798 (827)
                      ++...+.           .  .     ..+.+.+...++.+++.|++|||   +.+|+||||||+||+          ||
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kl~d~  161 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITDN  161 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCCCcEEECCC
Confidence            2211111           0  0     34667788899999999999996   678999999999998          99


Q ss_pred             cccccccCCCccc-cccceecccccccccC
Q 047196          799 GIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       799 Gla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      |+++.+....... .....++..|+|||++
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~y~apE~~  191 (280)
T cd05043         162 ALSRDLFPMDYHCLGDNENRPVKWMALESL  191 (280)
T ss_pred             CCcccccCCceEEeCCCCCcchhccCHHHH
Confidence            9998664332211 1122357789999963

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.69  E-value=1e-16  Score=171.29  Aligned_cols=152  Identities=24%  Similarity=0.368  Sum_probs=111.9

Q ss_pred             HhhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      ..++|+..+.||+|+||.||+|..+      .+..||||.+.... .....++.+|+.++++++|+|++++++++...+.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4577888999999999999999643      24589999886443 2334568899999999999999999999877665


Q ss_pred             eeeeeeccCC--------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          746 KALDCLHSTN--------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       746 ~~l~~l~~~~--------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      .++...+...                    ....+.....++.+++.|++|||   +++|+||||||+||+         
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCCcEEE
Confidence            5543332211                    11234456779999999999995   678999999999998         


Q ss_pred             -eecccccccCCCccc-cccceecccccccccC
Q 047196          797 -DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                       |||+++......... .....++..|+|||++
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~  193 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESL  193 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCHHHh
Confidence             999988654322211 1112357789999963

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.69  E-value=1.3e-16  Score=170.35  Aligned_cols=147  Identities=29%  Similarity=0.467  Sum_probs=106.7

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhc---CCCCceEEEeeeecCC-----
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNI---RHRNHVKRISSCSNED-----  744 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l---~H~niv~~~~~~~~~~-----  744 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||+|++.....  .....+.+|+++++++   +||||+++++++....     
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            3677889999999999999865 689999999864321  1223456787777765   6999999999875421     


Q ss_pred             cee--eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          745 FKA--LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       745 ~~~--l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      ...  +++...         ....+.+.....++.+++.|++|+|   +.+|+||||||+||+          |||+++.
T Consensus        81 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~  157 (288)
T cd07863          81 KVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGQVKLADFGLARI  157 (288)
T ss_pred             eEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccCcccc
Confidence            112  222211         1123567777889999999999995   678999999999998          9999987


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ......  .....||..|+|||++
T Consensus       158 ~~~~~~--~~~~~~~~~y~aPE~~  179 (288)
T cd07863         158 YSCQMA--LTPVVVTLWYRAPEVL  179 (288)
T ss_pred             ccCccc--CCCccccccccCchHh
Confidence            643221  2234589999999974

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.69  E-value=8.4e-17  Score=173.29  Aligned_cols=150  Identities=27%  Similarity=0.488  Sum_probs=110.4

Q ss_pred             hcccccceEecCCceEEEEEEec-CCc----EEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGI----EVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|+..+.||+|+||.||+|+.. +|+    .||+|.+.... .....++.+|+.++++++|+|+++++++|......++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v   86 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLV   86 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCceee
Confidence            45777889999999999999853 444    57899886543 3334578999999999999999999999876543222


Q ss_pred             -eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       ++..         .....+.+.....++.++++|++|||   +++|+||||||+||+          |||+++......
T Consensus        87 ~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~  163 (303)
T cd05110          87 TQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDE  163 (303)
T ss_pred             ehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHh---hcCeeccccccceeeecCCCceEEccccccccccCcc
Confidence             1111         11224566777899999999999995   678999999999998          999998765333


Q ss_pred             cccc-ccceecccccccccC
Q 047196          809 SMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~-~~~~gt~~Y~APE~l  827 (827)
                      .... ....++..|+|||++
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~  183 (303)
T cd05110         164 KEYNADGGKMPIKWMALECI  183 (303)
T ss_pred             cccccCCCccccccCCHHHh
Confidence            2211 122357789999964

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.69  E-value=2.4e-16  Score=165.89  Aligned_cols=150  Identities=23%  Similarity=0.341  Sum_probs=113.9

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-----hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-----AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|...+.||+|+||.||+|.. .+++.||+|++....     ....+.+.+|++++++++|||++++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4688889999999999999986 468999999986432     1234578999999999999999999999988775554


Q ss_pred             eeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ...+...          ..+.......++.++++|++|||   +.+|+||||||+||+          |||+++......
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~  158 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTIC  158 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceeccccc
Confidence            3333222          23445566789999999999995   678999999999988          999987654322


Q ss_pred             cccc--ccceecccccccccC
Q 047196          809 SMIQ--TETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~--~~~~gt~~Y~APE~l  827 (827)
                      ....  ....|+..|+|||++
T Consensus       159 ~~~~~~~~~~~~~~y~aPE~~  179 (263)
T cd06625         159 SSGTGMKSVTGTPYWMSPEVI  179 (263)
T ss_pred             cccccccCCCcCccccCccee
Confidence            2111  223478899999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.69  E-value=1.3e-16  Score=168.37  Aligned_cols=150  Identities=25%  Similarity=0.430  Sum_probs=112.7

Q ss_pred             hcccccceEecCCceEEEEEEec-C---CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-D---GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~---g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|+..+.||+|+||.||+|+.. +   +..||+|.+.... ....+.|.+|++++++++|||++++.+++...+..++.
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            46778899999999999999853 2   3479999986543 33456899999999999999999999998776655442


Q ss_pred             eeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          750 CLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       750 ~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ..+..           ...+.+.+...++.+++.|++|||   +.+|+||||||+||+          |||+++......
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd05066          84 TEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  160 (267)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCCCeEEeCCCCccccccccc
Confidence            22221           234577778899999999999995   678999999999997          999998765433


Q ss_pred             cccccc--ceecccccccccC
Q 047196          809 SMIQTE--TLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~--~~gt~~Y~APE~l  827 (827)
                      ....+.  ..++..|+|||++
T Consensus       161 ~~~~~~~~~~~~~~y~~pe~~  181 (267)
T cd05066         161 EAAYTTRGGKIPIRWTAPEAI  181 (267)
T ss_pred             ceeeecCCCccceeecCHhHh
Confidence            221111  1135689999974

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.68  E-value=2.1e-16  Score=169.24  Aligned_cols=149  Identities=27%  Similarity=0.333  Sum_probs=116.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +.|+..+.||+|+||.||+|+.. +++.||+|++........+.+.+|++++++++|+|++++.+.+..+...++...+.
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecC
Confidence            45777889999999999999865 58999999997766666778999999999999999999999987766544433222


Q ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          754 T-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 ~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .           ...+++.....++.+++++++|||   +.+|+||||||+||+          |||++......... .
T Consensus        92 ~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~-~  167 (292)
T cd06644          92 PGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQR-R  167 (292)
T ss_pred             CCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCCcceEEEcCCCCEEEccCccceeccccccc-c
Confidence            1           234567778889999999999995   678999999999988          99988754322211 1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....+++.|+|||++
T Consensus       168 ~~~~~~~~y~aPE~~  182 (292)
T cd06644         168 DSFIGTPYWMAPEVV  182 (292)
T ss_pred             ceecCCccccCceee
Confidence            223478999999974

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.68  E-value=1.4e-16  Score=169.88  Aligned_cols=149  Identities=24%  Similarity=0.322  Sum_probs=115.8

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|+|++++++++......++...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            3667788999999999999864 68999999987543  23356789999999999999999999998876655443322


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ....+++.+...++.++++|++|||   +.+|+|+||||+||+          |||+++..........
T Consensus        81 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~  157 (286)
T cd07832          81 MPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLY  157 (286)
T ss_pred             cCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCcc
Confidence            2          1233567778899999999999996   568999999999987          9999887654332222


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....|+.+|+|||++
T Consensus       158 ~~~~~~~~y~aPE~~  172 (286)
T cd07832         158 SHQVATRWYRAPELL  172 (286)
T ss_pred             ccccCcccccCceee
Confidence            334589999999974

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.68  E-value=2.1e-16  Score=166.07  Aligned_cols=149  Identities=23%  Similarity=0.446  Sum_probs=112.3

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-eeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-LDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-l~~l~~  753 (827)
                      ++|...+.||+|+||.||+|...++..||+|.+... ....+.|.+|++++++++|+|++++.+.+....... +++...
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~   84 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAK   84 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCC-hhHHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCC
Confidence            568888999999999999999877788999988654 334567899999999999999999999887633221 222211


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 ----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                .....++..+..++.+++.|++|||   +.+++||||||+||+          |||.++...........
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  161 (260)
T cd05073          85 GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTARE  161 (260)
T ss_pred             CcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCCcceeeccCCCccccc
Confidence                      1123566777889999999999996   568999999999988          99988766433222222


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||++
T Consensus       162 ~~~~~~~y~~PE~~  175 (260)
T cd05073         162 GAKFPIKWTAPEAI  175 (260)
T ss_pred             CCcccccccCHhHh
Confidence            22356789999974

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.68  E-value=1.9e-16  Score=169.93  Aligned_cols=149  Identities=27%  Similarity=0.327  Sum_probs=116.6

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|+..+.||+|+||.||+|.. .+++.||+|.+........+.+.+|++++++++|+|++++++.+......++...+.
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence            4677788999999999999985 468999999987655455677899999999999999999999988766555433332


Q ss_pred             CC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 TN---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      ..         ..+.+.+...++.+++.|++|||   +.+|+||||||+||+          |||+++........ ...
T Consensus       100 ~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~-~~~  175 (296)
T cd06654         100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RST  175 (296)
T ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEECccccchhccccccc-cCc
Confidence            22         23566778889999999999995   678999999999988          99988765433221 122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..|++.|+|||++
T Consensus       176 ~~~~~~y~aPE~~  188 (296)
T cd06654         176 MVGTPYWMAPEVV  188 (296)
T ss_pred             ccCCccccCHHHH
Confidence            3588999999963

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.68  E-value=2.1e-16  Score=170.13  Aligned_cols=150  Identities=24%  Similarity=0.420  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~  746 (827)
                      ++|...+.||+|+||.||+|..      .++..||||++.... ....+.+.+|+++++++ +|+|++++++++...+..
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  114 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPI  114 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCce
Confidence            5688889999999999999974      135679999986543 33456799999999999 799999999999877655


Q ss_pred             eeeeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          747 ALDCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       747 ~l~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      ++...+..            ...+.+.+...++.+++.|++|||   +++|+||||||+||+          |||+++.+
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~  191 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNVLLTHGKIVKICDFGLARDI  191 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhccceEEEcCCCeEEECCCcccccc
Confidence            44332221            122677888899999999999995   678999999999988          99998866


Q ss_pred             cCCCccc-cccceecccccccccC
Q 047196          805 TGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ....... .....++..|+|||++
T Consensus       192 ~~~~~~~~~~~~~~~~~y~aPE~~  215 (302)
T cd05055         192 MNDSNYVVKGNARLPVKWMAPESI  215 (302)
T ss_pred             cCCCceeecCCCCcccccCCHhhh
Confidence            4332211 1112357889999963

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.68  E-value=1.7e-16  Score=166.76  Aligned_cols=148  Identities=25%  Similarity=0.447  Sum_probs=110.7

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-eeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-KALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-~~l~~l~~  753 (827)
                      ++|...+.||+|+||.||+|...++..||+|++.... ...+.|.+|++++++++|+|++++++++..... ..+++...
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~   84 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGK   84 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCC
Confidence            4577888999999999999998777789999876433 234578899999999999999999988754332 22222221


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 ----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                ....+.+.....++.+++.|++|||   +.+|+||||||+||+          |||+++...........
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~  161 (260)
T cd05069          85 GSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQ  161 (260)
T ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccC
Confidence                      1123567778899999999999995   678999999999988          99998766433221112


Q ss_pred             cceeccccccccc
Q 047196          814 ETLVTIGYMAPGL  826 (827)
Q Consensus       814 ~~~gt~~Y~APE~  826 (827)
                      ...++..|+|||+
T Consensus       162 ~~~~~~~y~~Pe~  174 (260)
T cd05069         162 GAKFPIKWTAPEA  174 (260)
T ss_pred             CCccchhhCCHHH
Confidence            2236778999996

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.68  E-value=2.2e-16  Score=167.33  Aligned_cols=150  Identities=16%  Similarity=0.343  Sum_probs=112.7

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|+....||+|+||.||+|+.+      +...||+|.+...... ..++|.+|++++++++|+|++++++++.+.+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            56788899999999999999853      2467999988654333 4578999999999999999999999987755444


Q ss_pred             e--eeecc--------CCC---------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------ee
Q 047196          748 L--DCLHS--------TNC---------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF  798 (827)
Q Consensus       748 l--~~l~~--------~~~---------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DF  798 (827)
                      +  ++...        ...         .+.+..+..++.++++|++|||   +.+|+||||||+||+          ||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~~~  161 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLL  161 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCcccCcCccceEEEeCCCcEEEccc
Confidence            3  22211        011         4678888999999999999995   678999999999998          78


Q ss_pred             cccccccCCCccccccceecccccccccC
Q 047196          799 GIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       799 Gla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |+++..............++..|+|||++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  190 (275)
T cd05046         162 SLSKDVYNSEYYKLRNALIPLRWLAPEAV  190 (275)
T ss_pred             ccccccCcccccccCCceeEEeecChhhh
Confidence            87765432222112233468889999963

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.68  E-value=2e-16  Score=168.68  Aligned_cols=148  Identities=28%  Similarity=0.369  Sum_probs=112.9

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|+.. +|..||||++....  ....+.+.+|++++++++|||++++++++..++..++...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            3667789999999999999864 68999999986432  22345688999999999999999999999876655443222


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+++.....++.++++||+|||   +++|+||||||+||+          |||+++....... 
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~-  156 (285)
T cd07861          81 LSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVR-  156 (285)
T ss_pred             CCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcc-
Confidence            11            134667777889999999999995   678999999999998          9998876533221 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      ......+++.|+|||++
T Consensus       157 ~~~~~~~~~~y~aPE~~  173 (285)
T cd07861         157 VYTHEVVTLWYRAPEVL  173 (285)
T ss_pred             cccCCcccccccChHHh
Confidence            12233578999999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.68  E-value=1.1e-16  Score=169.36  Aligned_cols=151  Identities=27%  Similarity=0.354  Sum_probs=113.9

Q ss_pred             HHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC-----
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNED-----  744 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~-----  744 (827)
                      .+++.|+..+.||+|+||.||+|+.. +++.||||++.... ....++.+|+++++++ +|+|++++.+++...+     
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            45677888899999999999999864 58899999986543 2345788999999999 6999999999986532     


Q ss_pred             -ceee--eeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccc
Q 047196          745 -FKAL--DCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIG  801 (827)
Q Consensus       745 -~~~l--~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla  801 (827)
                       ..++  ++...          ....+.+.....++.|++.|++|||   +++|+|||+||+||+          |||++
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh~dl~~~nili~~~~~~~l~Dfg~~  158 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVS  158 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHEEECCCCCEEEccCCCc
Confidence             2222  22211          1124567777889999999999996   568999999999987          99998


Q ss_pred             ccccCCCccccccceecccccccccC
Q 047196          802 RLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +....... ......|+..|+|||++
T Consensus       159 ~~~~~~~~-~~~~~~g~~~y~aPE~~  183 (272)
T cd06637         159 AQLDRTVG-RRNTFIGTPYWMAPEVI  183 (272)
T ss_pred             eecccccc-cCCcccccccccCHhHh
Confidence            86543222 12234589999999974

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.68  E-value=1.7e-16  Score=170.04  Aligned_cols=152  Identities=27%  Similarity=0.423  Sum_probs=113.5

Q ss_pred             HhhcccccceEecCCceEEEEEEec------CCcEEEEEEEccc-chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQN-CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      ..++|+..+.||+|+||.||+|...      ....||+|++... ......++.+|+++++++ +|+|++++++++....
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   89 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG   89 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence            3456888899999999999999753      2367999998753 233456789999999999 8999999999987766


Q ss_pred             ceeeeeecc--------------------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          745 FKALDCLHS--------------------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       745 ~~~l~~l~~--------------------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                      ..++...+.                          ....+++...+.++.+++.|++|||   +++|+||||||+||+  
T Consensus        90 ~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~Nil~~  166 (293)
T cd05053          90 PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVT  166 (293)
T ss_pred             CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccceeeEEEc
Confidence            544322111                          1234667778899999999999995   678999999999998  


Q ss_pred             --------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                              |||+++.+....... .....++..|+|||++
T Consensus       167 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  206 (293)
T cd05053         167 EDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL  206 (293)
T ss_pred             CCCeEEeCccccccccccccceeccCCCCCCccccCHHHh
Confidence                    999998765432211 1112256789999963

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.68  E-value=1.7e-17  Score=177.77  Aligned_cols=155  Identities=28%  Similarity=0.467  Sum_probs=119.4

Q ss_pred             HHHHHhhcccccceEecCCceEEEEEEecC-CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          669 DLFRATEKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       669 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      +++....++...+++|-|.||.||.|.|+. ...||||.++.+ .+..++|..|+.+|+.++|||+|+++|.|..+...+
T Consensus       261 kWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFY  339 (1157)
T KOG4278|consen  261 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFY  339 (1157)
T ss_pred             hhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeE
Confidence            343344456677899999999999999864 678999999765 456789999999999999999999999998876555


Q ss_pred             eeeeccCCC------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          748 LDCLHSTNC------------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       748 l~~l~~~~~------------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      +...++..+            .+...-.+.+|.||+.|++||.   .+.+|||||.+.|.|          |||++|+..
T Consensus       340 IiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMt  416 (1157)
T KOG4278|consen  340 IITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMT  416 (1157)
T ss_pred             EEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhccccccceEEeeccchhhhhc
Confidence            433322221            1223334678999999999995   567999999999987          999999998


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +|...+-...-..+.|.|||-+
T Consensus       417 gDTYTAHAGAKFPIKWTAPEsL  438 (1157)
T KOG4278|consen  417 GDTYTAHAGAKFPIKWTAPESL  438 (1157)
T ss_pred             CCceecccCccCcccccCcccc
Confidence            8766433323347789999953

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.68  E-value=2.9e-16  Score=169.49  Aligned_cols=147  Identities=24%  Similarity=0.274  Sum_probs=114.1

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..+.||+|+||.||+++.. +|..||+|.+.... .....++.+|++++++++||||+++++++..++..++...+.
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~   81 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHM   81 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeecc
Confidence            5788899999999999999864 68889999986542 334467889999999999999999999998877665544333


Q ss_pred             CC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 TN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      ..          ..+.+.....++.++++|+.|||.  ..+|+||||||+||+          |||+++.......   .
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~---~  156 (308)
T cd06615          82 DGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA---N  156 (308)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh--hCCEEECCCChHHEEEecCCcEEEccCCCccccccccc---c
Confidence            22          234555667899999999999974  357999999999998          8998876532211   2


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...|+..|+|||++
T Consensus       157 ~~~~~~~~~aPE~~  170 (308)
T cd06615         157 SFVGTRSYMSPERL  170 (308)
T ss_pred             cCCCCcCccChhHh
Confidence            24588999999963

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.68  E-value=1.6e-16  Score=168.98  Aligned_cols=150  Identities=25%  Similarity=0.335  Sum_probs=117.9

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .++|+..+.||+|+||.||+|+.. ++..||+|+.........+.|.+|++++++++|+|++++++.+......++...+
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEF   83 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeec
Confidence            356888889999999999999864 6899999998766666667899999999999999999999998877655443322


Q ss_pred             cC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          753 ST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       753 ~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ..           ...+++.....++.+++.|+.|||   +.+|+||||||+||+          |||++......... 
T Consensus        84 ~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~-  159 (280)
T cd06611          84 CDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQK-  159 (280)
T ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEECCCCCEEEccCccchhhcccccc-
Confidence            21           234667778889999999999995   678999999999988          89987765432221 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....+++.|+|||++
T Consensus       160 ~~~~~~~~~y~~PE~~  175 (280)
T cd06611         160 RDTFIGTPYWMAPEVV  175 (280)
T ss_pred             cceeecchhhcCHHHH
Confidence            1223589999999963

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.68  E-value=2.3e-16  Score=169.31  Aligned_cols=149  Identities=27%  Similarity=0.324  Sum_probs=117.2

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|...+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.++++++|+|++++++++...+..++...+.
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            5688889999999999999985 578999999997654445567899999999999999999999998776555433332


Q ss_pred             CC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 TN---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      ..         ..+.+.+...++.++++|+.|||   +.+|+||||||+||+          |||+++........ ...
T Consensus        99 ~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~-~~~  174 (297)
T cd06656          99 AGGSLTDVVTETCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RST  174 (297)
T ss_pred             CCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccC-cCc
Confidence            22         23566678889999999999995   678999999999998          99998765433221 122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..+++.|+|||++
T Consensus       175 ~~~~~~y~aPE~~  187 (297)
T cd06656         175 MVGTPYWMAPEVV  187 (297)
T ss_pred             ccCCccccCHHHH
Confidence            3478999999963

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.68  E-value=2e-16  Score=169.02  Aligned_cols=148  Identities=24%  Similarity=0.278  Sum_probs=112.5

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceee--ee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKAL--DC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l--~~  750 (827)
                      +|...+.||+|+||.||+++.. +|+.||||++.... ......+.+|+.++.++. |+|+|++++++..+...++  ++
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~   84 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMEL   84 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEec
Confidence            4556678999999999999864 68999999986532 334567899999999996 9999999998877654433  22


Q ss_pred             ecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          751 LHS------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       751 l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ...            ....+.+.....++.++++|++|||  ++.+|+||||||+||+          |||+++.+....
T Consensus        85 ~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh--~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~  162 (288)
T cd06616          85 MDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLK--EELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSI  162 (288)
T ss_pred             ccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh--hcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCC
Confidence            211            1234566777889999999999997  3458999999999997          999987664332


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..  ....|++.|+|||++
T Consensus       163 ~~--~~~~~~~~y~aPE~~  179 (288)
T cd06616         163 AK--TRDAGCRPYMAPERI  179 (288)
T ss_pred             cc--ccccCccCccCHHHh
Confidence            21  223478999999974

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.68  E-value=2.7e-16  Score=166.35  Aligned_cols=148  Identities=27%  Similarity=0.456  Sum_probs=108.3

Q ss_pred             ccccceEecCCceEEEEEEec-C---CcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-D---GIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~---g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----  745 (827)
                      |...+.||+|+||.||+|... +   +..||||++....  .....++.+|++.+++++|+|++++++++.....     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            455688999999999999864 2   3779999986432  3345689999999999999999999998865432     


Q ss_pred             -eee--eeecc--------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------ee
Q 047196          746 -KAL--DCLHS--------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF  798 (827)
Q Consensus       746 -~~l--~~l~~--------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DF  798 (827)
                       .++  ++...              ....+.+.....++.+++.||+|||   +.+|+||||||+||+          ||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchheEEECCCCeEEECCc
Confidence             122  22111              1124567777889999999999996   578999999999998          99


Q ss_pred             cccccccCCCcccc-ccceecccccccccC
Q 047196          799 GIGRLLTGDRSMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       799 Gla~~~~~~~~~~~-~~~~gt~~Y~APE~l  827 (827)
                      |+++.......... ....++..|+|||++
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  187 (273)
T cd05035         158 GLSKKIYSGDYYRQGRIAKMPVKWIAIESL  187 (273)
T ss_pred             cceeeccccccccccccccCCccccCHhhc
Confidence            99987643322111 112246789999964

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.68  E-value=1.2e-16  Score=167.97  Aligned_cols=146  Identities=31%  Similarity=0.540  Sum_probs=108.3

Q ss_pred             ccceEecCCceEEEEEEec-----CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--ee
Q 047196          679 KENLIGVGSFGSVYKGRLH-----DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DC  750 (827)
Q Consensus       679 ~~~~iG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~  750 (827)
                      ..+.||.|+||.||+|++.     .+..||||.+... .....+.|.+|++.+++++||||++++|+|...+...+  ++
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            3468999999999999876     2578999999653 33457889999999999999999999999996553333  22


Q ss_pred             e---------ccC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 L---------HST-NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l---------~~~-~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .         ... ...+++..+..|+.++|+||+|||   +.+|+|+||+++||+          |||+++........
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh---~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~  159 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLH---SNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKY  159 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence            2         112 346788999999999999999997   457999999999998          89988776322221


Q ss_pred             -ccccceecccccccccC
Q 047196          811 -IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 -~~~~~~gt~~Y~APE~l  827 (827)
                       ..........|+|||++
T Consensus       160 ~~~~~~~~~~~~~aPE~~  177 (259)
T PF07714_consen  160 KNDSSQQLPLRYLAPEVL  177 (259)
T ss_dssp             EESTTSESGGGGS-HHHH
T ss_pred             cccccccccccccccccc
Confidence             12223467899999963

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.68  E-value=6.1e-17  Score=173.10  Aligned_cols=147  Identities=22%  Similarity=0.367  Sum_probs=113.2

Q ss_pred             hcccccceEecCCceEEEEEEecC-CcEEEEEEEcccchH---H-----HHHHHHHHHHHHhcC---CCCceEEEeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAM---A-----LKSFEAECEVMKNIR---HRNHVKRISSCSN  742 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~---~-----~~~~~~Ei~~l~~l~---H~niv~~~~~~~~  742 (827)
                      .+|...+.+|+|+||.|+.|.++. ..+|.||.+.+...-   .     .-..-.||+||..++   |+||++++.++.+
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            357778899999999999998764 567999987553211   0     113457999999998   9999999999999


Q ss_pred             CCceeeeeeccCC-----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccc
Q 047196          743 EDFKALDCLHSTN-----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIG  801 (827)
Q Consensus       743 ~~~~~l~~l~~~~-----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla  801 (827)
                      .++.+++....+.           ..++..+..-|.+||+.|+++|   |+.+|||||||-+||+          |||.|
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hl---h~~~ivhrdikdenvivd~~g~~klidfgsa  717 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHL---HDQGIVHRDIKDENVIVDSNGFVKLIDFGSA  717 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccc---cccCceecccccccEEEecCCeEEEeeccch
Confidence            8887775443322           2344556667999999999998   7899999999999987          99988


Q ss_pred             ccccCCCccccccceecccccccccC
Q 047196          802 RLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .......-   ...+||.+|.|||++
T Consensus       718 a~~ksgpf---d~f~gtv~~aapevl  740 (772)
T KOG1152|consen  718 AYTKSGPF---DVFVGTVDYAAPEVL  740 (772)
T ss_pred             hhhcCCCc---ceeeeeccccchhhh
Confidence            76543221   235699999999985

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.68  E-value=1.7e-16  Score=169.39  Aligned_cols=158  Identities=24%  Similarity=0.336  Sum_probs=116.9

Q ss_pred             cchhHHHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeec
Q 047196          665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSN  742 (827)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~  742 (827)
                      +.++++..+.++|+..+.||+|+||.||+|+.. +++.||+|++.... ....++.+|+.+++++ +|+|++++++++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            445566677889999999999999999999864 58899999875432 2335688999999999 69999999998743


Q ss_pred             C-----Cceee--eeecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          743 E-----DFKAL--DCLHS------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       743 ~-----~~~~l--~~l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                      .     +..++  ++...            ....+.+.....++.++++|+.|||   +.+|+||||||+||+       
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~  163 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLH---VNKTIHRDVKGNNILLTTEGGV  163 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHH---hCCccccCCCHHhEEECCCCCE
Confidence            2     22222  32211            1123455566779999999999995   678999999999997       


Q ss_pred             ---eecccccccCCCccccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                         |||+++........ .....|++.|+|||++
T Consensus       164 kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~  196 (286)
T cd06638         164 KLVDFGVSAQLTSTRLR-RNTSVGTPFWMAPEVI  196 (286)
T ss_pred             EEccCCceeecccCCCc-cccccCCCcccChhhh
Confidence               99998766432221 2234589999999964

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.68  E-value=2.3e-16  Score=167.57  Aligned_cols=152  Identities=25%  Similarity=0.419  Sum_probs=112.2

Q ss_pred             HhhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      .+++|...+.||+|+||.||+|...      .+..||+|...... ......|.+|+.++++++|+|++++++++.+.+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            3467888899999999999999864      35779999886443 3344679999999999999999999998876654


Q ss_pred             eee--eeeccC---------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------
Q 047196          746 KAL--DCLHST---------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------  796 (827)
Q Consensus       746 ~~l--~~l~~~---------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------  796 (827)
                      .++  ++....               ...+.+.+...++.++++|++|||   +++++||||||+||+            
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~nil~~~~~~~~~~kl  160 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRVAKI  160 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchheEEEeccCCCcceEe
Confidence            443  222110               113677788899999999999995   567999999999988            


Q ss_pred             -eecccccccCCCcccc-ccceecccccccccC
Q 047196          797 -DFGIGRLLTGDRSMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~~~~~~~~~-~~~~gt~~Y~APE~l  827 (827)
                       |||+++.......... .....+..|||||++
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05036         161 ADFGMARDIYRASYYRKGGRAMLPIKWMPPEAF  193 (277)
T ss_pred             ccCccccccCCccceecCCCCCccHhhCCHHHH
Confidence             8888876532221111 111235689999973

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.68  E-value=2.1e-16  Score=168.05  Aligned_cols=150  Identities=25%  Similarity=0.408  Sum_probs=113.2

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .+|...++||+|+||.||+++..      ++..||+|++........+.|.+|++++++++|+|++++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence            35666789999999999999632      356899999876655566789999999999999999999999887665444


Q ss_pred             eeeccCC-------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          749 DCLHSTN-------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       749 ~~l~~~~-------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                      ...+...                         ..+.+.....++.+++.|++|||   +++|+||||||+||+       
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~~~  161 (280)
T cd05092          85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQGLVV  161 (280)
T ss_pred             EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcCCCCE
Confidence            2221111                         23567788899999999999995   678999999999998       


Q ss_pred             ---eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                         |||+++........ ......+++.|+|||++
T Consensus       162 kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (280)
T cd05092         162 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI  196 (280)
T ss_pred             EECCCCceeEcCCCceeecCCCccccccccCHHHh
Confidence               99998765432211 11122357889999963

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.68  E-value=2.8e-16  Score=167.02  Aligned_cols=150  Identities=29%  Similarity=0.476  Sum_probs=111.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCc----EEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGI----EVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .+|+..+.||+|+||.||+|... +|+    .||+|.+.... .....++.+|++++++++|+|+++++++|......++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v   86 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLI   86 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEE
Confidence            46777899999999999999864 333    68999886553 3345689999999999999999999999877332221


Q ss_pred             -eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       ++..         .....+++.....++.++++|++|||   +++|+||||||+||+          |||+++......
T Consensus        87 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~  163 (279)
T cd05057          87 TQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDE  163 (279)
T ss_pred             EecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecccCcceEEEcCCCeEEECCCcccccccCcc
Confidence             2111         11234677888999999999999996   578999999999998          999998765332


Q ss_pred             cccc-ccceecccccccccC
Q 047196          809 SMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~-~~~~gt~~Y~APE~l  827 (827)
                      .... ....++..|+|||++
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~  183 (279)
T cd05057         164 KEYHAEGGKVPIKWMALESI  183 (279)
T ss_pred             cceecCCCcccccccCHHHh
Confidence            2111 111246789999963

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.68  E-value=3e-16  Score=166.57  Aligned_cols=150  Identities=25%  Similarity=0.367  Sum_probs=113.2

Q ss_pred             hcccccceEecCCceEEEEEEecC------CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD------GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|...+.||+|+||.||+|...+      +..||+|.+.... ......+.+|+++++.++|+|++++++++......+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~   85 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTL   85 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcE
Confidence            567788999999999999998642      3689999986543 334567899999999999999999999987766544


Q ss_pred             eeeeccCC--------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------e
Q 047196          748 LDCLHSTN--------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------D  797 (827)
Q Consensus       748 l~~l~~~~--------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------D  797 (827)
                      +...+...                    ..+.+.....++.+++.|+.|||   +.+|+||||||+||+          |
T Consensus        86 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~~~kl~d  162 (277)
T cd05032          86 VVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGD  162 (277)
T ss_pred             EEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCCCEEECC
Confidence            43222111                    12456677889999999999995   678999999999988          9


Q ss_pred             ecccccccCCCcc-ccccceecccccccccC
Q 047196          798 FGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       798 FGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                      ||+++.+...... ......++..|+|||++
T Consensus       163 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05032         163 FGMTRDIYETDYYRKGGKGLLPVRWMAPESL  193 (277)
T ss_pred             cccchhhccCcccccCCCCCccccccCHHHH
Confidence            9998866433221 11223468899999963

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=2.2e-18  Score=157.11  Aligned_cols=159  Identities=30%  Similarity=0.519  Sum_probs=135.5

Q ss_pred             CCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCcc
Q 047196          402 NLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSP  481 (827)
Q Consensus       402 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  481 (827)
                      ++++.+.|-||+|+++ .+|+.+..+.+|+.|++++|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4677778888888887 56667788888888888888887 67888888888888888888887 788889999999999


Q ss_pred             ccCCCccc-ccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcc
Q 047196          482 DLGSNRLT-SVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGL  560 (827)
Q Consensus       482 ~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l  560 (827)
                      ||++|++. ..+|..|..+..|+.|.|+.|.++ .+|.+++++++|+.|.+..|.+- ..|.+++.++.|+.|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            99998885 467888999999999999999997 67889999999999999999987 7899999999999999999999


Q ss_pred             eeecC
Q 047196          561 EGLIP  565 (827)
Q Consensus       561 ~g~ip  565 (827)
                      +-..|
T Consensus       186 ~vlpp  190 (264)
T KOG0617|consen  186 TVLPP  190 (264)
T ss_pred             eecCh
Confidence            86555

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.68  E-value=2.2e-16  Score=173.39  Aligned_cols=144  Identities=26%  Similarity=0.393  Sum_probs=111.2

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CC-----CceEEEeeeecCCceee
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HR-----NHVKRISSCSNEDFKAL  748 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~-----niv~~~~~~~~~~~~~l  748 (827)
                      +|+..++||+|+||.|.||.. ++++.||||+++.. +....+-..|+.+|..++ |.     |+|++++++...+...+
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC-hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            788899999999999999975 56999999999654 334456678999999998 43     69999999877665544


Q ss_pred             ee--ec--------c-CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eeccccccc
Q 047196          749 DC--LH--------S-TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLT  805 (827)
Q Consensus       749 ~~--l~--------~-~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~  805 (827)
                      .+  +.        . ....++......|+.||+.||.+||   +.+|||+||||+|||            |||.|....
T Consensus       266 VfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~  342 (586)
T KOG0667|consen  266 VFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFES  342 (586)
T ss_pred             eehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEecccccccC
Confidence            22  11        1 1234566667789999999999995   778999999999998            999987653


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..-.    ..+-+..|+|||||
T Consensus       343 q~vy----tYiQSRfYRAPEVI  360 (586)
T KOG0667|consen  343 QRVY----TYIQSRFYRAPEVI  360 (586)
T ss_pred             Ccce----eeeeccccccchhh
Confidence            2211    23458899999986

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.68  E-value=2.5e-16  Score=169.94  Aligned_cols=150  Identities=27%  Similarity=0.417  Sum_probs=111.4

Q ss_pred             hcccccceEecCCceEEEEEEec--------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH--------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      ++|...+.||+|+||.||+|+..        ++..||+|.+.... ....+++.+|+++++++ +|+|+++++++|...+
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   97 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            56888899999999999999742        23579999987542 33456788999999999 7999999999998776


Q ss_pred             ceeeeeeccC--------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          745 FKALDCLHST--------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       745 ~~~l~~l~~~--------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                      ..++...+..                          ...+.+.+.+.++.+++.|++|||   +.+|+||||||+||+  
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~  174 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVT  174 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHheEEc
Confidence            5544222211                          123667788899999999999996   678999999999988  


Q ss_pred             --------eecccccccCCCcccc-ccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSMIQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~~~-~~~~gt~~Y~APE~l  827 (827)
                              |||.++.......... ....+++.|||||++
T Consensus       175 ~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  214 (307)
T cd05098         175 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL  214 (307)
T ss_pred             CCCcEEECCCcccccccccchhhccccCCCccceeChHHh
Confidence                    8998876543211111 111245789999963

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.68  E-value=2.3e-16  Score=168.37  Aligned_cols=147  Identities=22%  Similarity=0.271  Sum_probs=114.1

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||+|.+... .......+.+|++++++++|+|++++++++...+..++...+.
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeec
Confidence            5677889999999999999875 6899999988653 2334567899999999999999999999887766554422221


Q ss_pred             C-------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          754 T-------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       754 ~-------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .             ...+++.....++.++++|+.|||.  +.+|+||||||+||+          |||+++.+..... 
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~-  158 (286)
T cd06622          82 DAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLA-  158 (286)
T ss_pred             CCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCcc-
Confidence            1             1256777888999999999999973  458999999999988          9999876532221 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ....++++|+|||++
T Consensus       159 --~~~~~~~~y~aPE~~  173 (286)
T cd06622         159 --KTNIGCQSYMAPERI  173 (286)
T ss_pred             --ccCCCccCccCcchh
Confidence              223478899999963

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.67  E-value=2.9e-16  Score=168.47  Aligned_cols=149  Identities=28%  Similarity=0.339  Sum_probs=117.5

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|+..+.||+|+||.||+|.. .+|+.||||++........+.+.+|++++++++|+|++++++++..++..++...+.
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            3588889999999999999985 568999999987654445567899999999999999999999998776555433322


Q ss_pred             C---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 T---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      .         ...+++.++..++.+++.|++|||   +.+|+||||||+||+          |||+++........ ...
T Consensus        99 ~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~-~~~  174 (296)
T cd06655          99 AGGSLTDVVTETCMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSK-RST  174 (296)
T ss_pred             CCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccchhccccccc-CCC
Confidence            2         224677888899999999999995   678999999999998          99988765443221 122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..++..|+|||++
T Consensus       175 ~~~~~~y~aPE~~  187 (296)
T cd06655         175 MVGTPYWMAPEVV  187 (296)
T ss_pred             cCCCccccCcchh
Confidence            3588999999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.67  E-value=2.7e-16  Score=164.97  Aligned_cols=146  Identities=27%  Similarity=0.477  Sum_probs=111.5

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHH--HHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eee
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMA--LKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCL  751 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~--~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l  751 (827)
                      |+..+.||+|+||+||+++.. +++.||+|++.......  .....+|+.++++++|+||+++.+++......++  ++.
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            456789999999999999875 56789999997654332  2344669999999999999999999987665443  222


Q ss_pred             cc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          752 HS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       752 ~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      ..        ....+++.....++.++++||+|||   +.+|+||||||+||+          |||.+........ ...
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh---~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~-~~~  156 (260)
T PF00069_consen   81 PGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLH---SKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNE-NFN  156 (260)
T ss_dssp             TTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHH---HTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTS-EBS
T ss_pred             ccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc-ccc
Confidence            22        1345677788999999999999996   468999999999998          9999876422222 122


Q ss_pred             cceeccccccccc
Q 047196          814 ETLVTIGYMAPGL  826 (827)
Q Consensus       814 ~~~gt~~Y~APE~  826 (827)
                      ...+|..|+|||+
T Consensus       157 ~~~~~~~y~aPE~  169 (260)
T PF00069_consen  157 PFVGTPEYMAPEV  169 (260)
T ss_dssp             SSSSSGGGSCHHH
T ss_pred             ccccccccccccc
Confidence            3458999999997

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.67  E-value=4.9e-16  Score=163.79  Aligned_cols=150  Identities=22%  Similarity=0.320  Sum_probs=110.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc-----chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-----CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-----~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~  746 (827)
                      .+|+..+.||+|+||.||+|... +|+.||||++...     .....+.+.+|++++++++|+|+++.++++.+..  ..
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            46788899999999999999864 5899999988532     1234567899999999999999999999876542  22


Q ss_pred             ee--eeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          747 AL--DCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       747 ~l--~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+  ++....        ...+++.....++.+++.||+|||   +.+|+||||||+||+          |||+++....
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~  158 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQT  158 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEecCCCCEEECcCcccccccc
Confidence            22  222111        123456667889999999999995   667999999999998          9999876532


Q ss_pred             CCcc--ccccceecccccccccC
Q 047196          807 DRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ....  ......|+..|+|||++
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~  181 (265)
T cd06652         159 ICLSGTGMKSVTGTPYWMSPEVI  181 (265)
T ss_pred             ccccccccccCCCCccccChhhh
Confidence            2111  11223488999999973

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.67  E-value=2.2e-17  Score=182.66  Aligned_cols=147  Identities=30%  Similarity=0.487  Sum_probs=114.0

Q ss_pred             ccccceEecCCceEEEEEEe-cCC----cEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--
Q 047196          677 FSKENLIGVGSFGSVYKGRL-HDG----IEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--  748 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~-~~g----~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--  748 (827)
                      ..+.++||+|+||+||||.+ +.|    .+||||++... ..+..+++.+|+-+|++++|||++|++|.|.....+..  
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq  777 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQ  777 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHH
Confidence            44568999999999999975 443    57999998654 45567889999999999999999999999987663322  


Q ss_pred             --------eeeccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          749 --------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       749 --------~~l~~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                              ++.+.....+...+.+.+..|||+|+.|||   .++++||||.+.|||          |||+|+++..+...
T Consensus       778 ~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~e  854 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKE  854 (1177)
T ss_pred             hcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhhccCccccc
Confidence                    333334455666677889999999999995   788999999999999          99999999776654


Q ss_pred             ccccce-eccccccccc
Q 047196          811 IQTETL-VTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~-gt~~Y~APE~  826 (827)
                      ...... ..+.|||=|.
T Consensus       855 y~~~~gK~pikwmale~  871 (1177)
T KOG1025|consen  855 YSAPGGKVPIKWMALES  871 (1177)
T ss_pred             ccccccccCcHHHHHHH
Confidence            322211 3567887664

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.67  E-value=4.6e-16  Score=163.09  Aligned_cols=145  Identities=26%  Similarity=0.460  Sum_probs=113.4

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .++|+..+.||+|+||.||+|... |+.||||++..... ..+++.+|+.++++++|+|++++++++...+...+...+.
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   82 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYM   82 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEec
Confidence            356788899999999999999875 78999999976543 5678999999999999999999999988655444422221


Q ss_pred             CC------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 TN------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ~~------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ..            ..+.+.....++.+++.|+.|||   +.+|+||||||+||+          |||.++.......  
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~--  157 (256)
T cd05039          83 AKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD--  157 (256)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcccceEEEeCCCCEEEcccccccccccccc--
Confidence            11            14677888899999999999995   678999999999998          8998876632211  


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                        ...++.+|+|||++
T Consensus       158 --~~~~~~~~~ape~~  171 (256)
T cd05039         158 --SGKLPVKWTAPEAL  171 (256)
T ss_pred             --cCCCcccccCchhh
Confidence              12356789999963

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.67  E-value=2.1e-16  Score=168.97  Aligned_cols=147  Identities=23%  Similarity=0.409  Sum_probs=109.2

Q ss_pred             ccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          677 FSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      |...+.||+|+||.||+|+..      ....||+|.+.... ....+++.+|++++++++|||||++++.|...+..++.
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLI   81 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEE
Confidence            566788999999999999752      23579999886543 33456799999999999999999999998776654442


Q ss_pred             eeccCC----------------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCcce
Q 047196          750 CLHSTN----------------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNV  795 (827)
Q Consensus       750 ~l~~~~----------------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NI  795 (827)
                      ..+...                                  ..+.+.....++.+++.|++|||   +.+|+||||||+||
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp~ni  158 (290)
T cd05045          82 VEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNV  158 (290)
T ss_pred             EEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhhhheE
Confidence            222110                                  12456677899999999999996   67899999999999


Q ss_pred             e----------eecccccccCCCcccc-ccceeccccccccc
Q 047196          796 F----------DFGIGRLLTGDRSMIQ-TETLVTIGYMAPGL  826 (827)
Q Consensus       796 l----------DFGla~~~~~~~~~~~-~~~~gt~~Y~APE~  826 (827)
                      +          |||+++.......... ....++..|+|||+
T Consensus       159 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~  200 (290)
T cd05045         159 LVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIES  200 (290)
T ss_pred             EEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHH
Confidence            8          9999886543322111 11235778999996

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=1e-17  Score=163.25  Aligned_cols=149  Identities=26%  Similarity=0.390  Sum_probs=110.8

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee----
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL----  748 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l----  748 (827)
                      +.+..+-||-|+||+||..++ ++|+.||.|++..-  .-...+++.+|++++.-.+|.|+...++........+.    
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiY  133 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELY  133 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence            456678899999999999986 47999999998642  22345788999999999999999987766543321111    


Q ss_pred             ---eee----c---cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 ---DCL----H---STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ---~~l----~---~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                         +.+    |   .....++-....-...||.+||.||   |+.+|+||||||.|+|          |||+||....+.
T Consensus       134 V~TELmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYL---HsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~  210 (449)
T KOG0664|consen  134 VLTELMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYL---HTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRD  210 (449)
T ss_pred             HHHHHHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHH---hhcchhhccCCCccEEeccCceEEecccccccccchhh
Confidence               111    1   1122344334445678999999999   5788999999999987          999999887666


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ....+..+.|-+|.|||++
T Consensus       211 ~~hMTqEVVTQYYRAPEiL  229 (449)
T KOG0664|consen  211 RLNMTHEVVTQYYRAPELL  229 (449)
T ss_pred             hhhhHHHHHHHHhccHHHh
Confidence            5555556689999999975

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.67  E-value=2.4e-16  Score=166.37  Aligned_cols=151  Identities=24%  Similarity=0.453  Sum_probs=113.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CC---cEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DG---IEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ..+|+..+.||+|+||.||+|+.. ++   ..||||++.... ....+++.+|++++++++|+|++++.+++...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            356888899999999999999864 33   379999986542 3445679999999999999999999999987765544


Q ss_pred             eeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          749 DCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       749 ~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      ...+..           ...+++.+...++.+++.|++|||   +.+|+||||||+||+          |||+++.....
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~  160 (268)
T cd05063          84 ITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDD  160 (268)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEEcCCCcEEECCCccceecccc
Confidence            332221           234677788899999999999995   668999999999987          99998766433


Q ss_pred             Ccccccc--ceecccccccccC
Q 047196          808 RSMIQTE--TLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~--~~gt~~Y~APE~l  827 (827)
                      .......  ...+..|+|||++
T Consensus       161 ~~~~~~~~~~~~~~~y~~PE~~  182 (268)
T cd05063         161 PEGTYTTSGGKIPIRWTAPEAI  182 (268)
T ss_pred             cccceeccCCCcCceecCHHHh
Confidence            2211111  1135679999963

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.67  E-value=2e-16  Score=168.99  Aligned_cols=150  Identities=25%  Similarity=0.381  Sum_probs=112.6

Q ss_pred             hhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      ..+|+..+.||+|+||.||+|+..      ++..||+|++.... ....++|.+|++++++++|||++++++++..++..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            457888899999999999999853      46789999987543 33456799999999999999999999998876644


Q ss_pred             eeeeeccCC--------------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCcc
Q 047196          747 ALDCLHSTN--------------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKN  794 (827)
Q Consensus       747 ~l~~l~~~~--------------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~N  794 (827)
                      ++...+...                                ..+.+...+.++.+++.||+|||   +++++||||||+|
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~p~n  160 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRN  160 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCeecccccHhh
Confidence            432222111                                12456667889999999999996   6789999999999


Q ss_pred             ee----------eecccccccCCCcc-ccccceeccccccccc
Q 047196          795 VF----------DFGIGRLLTGDRSM-IQTETLVTIGYMAPGL  826 (827)
Q Consensus       795 Il----------DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~  826 (827)
                      |+          |||+++........ .......+..|+|||+
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  203 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPES  203 (288)
T ss_pred             eEecCCCceEECccccceecccCccccccCCCccChhhcCHHH
Confidence            88          99998765432211 1112235678999996

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.67  E-value=3.4e-16  Score=168.42  Aligned_cols=153  Identities=27%  Similarity=0.400  Sum_probs=115.6

Q ss_pred             HHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC----
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNED----  744 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~----  744 (827)
                      ...++|+..+.||+|+||.||+|..+ +|+.||||+++...  ......+.+|++++++++|||++++++++.+..    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            35578889999999999999999875 58999999986432  223356788999999999999999999886644    


Q ss_pred             ------ceee--eeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------ee
Q 047196          745 ------FKAL--DCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF  798 (827)
Q Consensus       745 ------~~~l--~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DF  798 (827)
                            ..++  ++...        ....+++.....++.+++.||+|||   +.+|+||||||+||+          ||
T Consensus        84 ~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~kl~df  160 (302)
T cd07864          84 FKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKGQIKLADF  160 (302)
T ss_pred             ccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCcEEeCcc
Confidence                  2222  22211        1234678888999999999999995   668999999999987          99


Q ss_pred             cccccccCCCccccccceecccccccccC
Q 047196          799 GIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       799 Gla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |+++..............++..|+|||++
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~y~~PE~~  189 (302)
T cd07864         161 GLARLYNSEESRPYTNKVITLWYRPPELL  189 (302)
T ss_pred             cccccccCCcccccccceeccCccChHHh
Confidence            99887654332211223468899999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.67  E-value=4.1e-17  Score=157.84  Aligned_cols=152  Identities=23%  Similarity=0.294  Sum_probs=114.1

Q ss_pred             hcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----KAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----~~l  748 (827)
                      ++|...+.+|+|+|+.||.++ ..+++.+|+|++.-...+..+...+|++..++++|||++++++++..+..     .++
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yl  100 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYL  100 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEE
Confidence            568888999999999999998 67889999999976666677889999999999999999999888744321     222


Q ss_pred             --eee------------ccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          749 --DCL------------HSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       749 --~~l------------~~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                        .+.            ...+...+..+.+.|..++++||++||. -.++.+||||||+|||          |||.+...
T Consensus       101 l~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~-~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a  179 (302)
T KOG2345|consen  101 LLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHE-KEPPYAHRDIKPANILLSDSGLPVLMDLGSATQA  179 (302)
T ss_pred             EeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhc-cCCcccccCCCcceeEecCCCceEEEeccCcccc
Confidence              111            1122356777888999999999999985 4567999999999998          99987654


Q ss_pred             cCC---Cccc---c--ccceecccccccccC
Q 047196          805 TGD---RSMI---Q--TETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~---~~~~---~--~~~~gt~~Y~APE~l  827 (827)
                      ...   ...+   +  .+..-|..|+|||.+
T Consensus       180 ~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf  210 (302)
T KOG2345|consen  180 PIQIEGSRQALRLQEWAEERCTIPYRAPELF  210 (302)
T ss_pred             ceEeechHHHHHHHHHHHHhCCCcccCchhe
Confidence            211   1100   0  112248899999964

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.67  E-value=3.2e-16  Score=172.01  Aligned_cols=156  Identities=24%  Similarity=0.369  Sum_probs=118.1

Q ss_pred             ccchhHHHHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeee
Q 047196          664 RFSYQDLFRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSC  740 (827)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~  740 (827)
                      .....++...+++|...+.||+|+||.||+|.. .+|+.||||++....  ....+.+.+|++++++++|+||+++.+++
T Consensus         6 ~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~   85 (345)
T cd07877           6 QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVF   85 (345)
T ss_pred             hhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeee
Confidence            344566777889999999999999999999985 578999999986532  23346788999999999999999999887


Q ss_pred             ecCC------ceee-eeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------
Q 047196          741 SNED------FKAL-DCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------  796 (827)
Q Consensus       741 ~~~~------~~~l-~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------  796 (827)
                      ....      ..++ .....       ....+.+.....++.++++|++|||   +.+|+||||||+||+          
T Consensus        86 ~~~~~~~~~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~  162 (345)
T cd07877          86 TPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKIL  162 (345)
T ss_pred             eecccccccccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEcCCCCEEEe
Confidence            5432      1111 11111       1124677788889999999999996   578999999999998          


Q ss_pred             eecccccccCCCccccccceeccccccccc
Q 047196          797 DFGIGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       797 DFGla~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      |||+++......    ....++..|+|||+
T Consensus       163 dfg~~~~~~~~~----~~~~~~~~y~aPE~  188 (345)
T cd07877         163 DFGLARHTDDEM----TGYVATRWYRAPEI  188 (345)
T ss_pred             cccccccccccc----cccccCCCccCHHH
Confidence            999887643221    22347899999996

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.67  E-value=4.1e-16  Score=163.64  Aligned_cols=143  Identities=24%  Similarity=0.429  Sum_probs=106.2

Q ss_pred             eEecCCceEEEEEEec---CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-eeeeccC-
Q 047196          682 LIGVGSFGSVYKGRLH---DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-LDCLHST-  754 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-l~~l~~~-  754 (827)
                      .||+|+||.||+|.++   ++..||||++....  ....+++.+|+.++++++|+|++++++++..+.... +++.... 
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~   81 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGP   81 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCc
Confidence            5899999999999653   57889999986432  344578999999999999999999999986554322 2222111 


Q ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc--cccc
Q 047196          755 -------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI--QTET  815 (827)
Q Consensus       755 -------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~--~~~~  815 (827)
                             ...+++.....++.+++.|++|+|   +++|+||||||.||+          |||+++.........  ....
T Consensus        82 L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~  158 (257)
T cd05116          82 LNKFLQKNKHVTEKNITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHG  158 (257)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCC
Confidence                   123566778899999999999995   678999999999987          999998765433221  1112


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .++..|+|||++
T Consensus       159 ~~~~~y~aPE~~  170 (257)
T cd05116         159 KWPVKWYAPECM  170 (257)
T ss_pred             CCCccccCHhHh
Confidence            246789999963

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.67  E-value=2.5e-16  Score=167.86  Aligned_cols=149  Identities=25%  Similarity=0.463  Sum_probs=111.5

Q ss_pred             cccccceEecCCceEEEEEEe-----cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Cce-
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFK-  746 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~-  746 (827)
                      -|...+.||+|+||.||+|++     .++..||+|.+.... ....+.+.+|++++++++|+|++++.+++...  ... 
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            356778899999999999974     247889999986442 34456799999999999999999999988764  222 


Q ss_pred             -eeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          747 -ALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       747 -~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                       .+++...         ....+++.++..++.+++.|++|+|   +++|+||||||+||+          |||+++.+..
T Consensus        85 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             EEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCcccccccc
Confidence             2232211         1124677888899999999999995   678999999999998          9999887643


Q ss_pred             CCcc--ccccceecccccccccC
Q 047196          807 DRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ....  ......++..|+|||++
T Consensus       162 ~~~~~~~~~~~~~~~~y~apE~~  184 (284)
T cd05079         162 DKEYYTVKDDLDSPVFWYAPECL  184 (284)
T ss_pred             CccceeecCCCCCCccccCHHHh
Confidence            3221  11122367789999963

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.67  E-value=4e-16  Score=166.89  Aligned_cols=145  Identities=27%  Similarity=0.336  Sum_probs=114.3

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|...+.||+|+||.||++... +++.||||++....   ....+.+.+|++++++++|||++++++++.++...++...
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            5777899999999999999864 68999999986432   2345678999999999999999999999887765544332


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +..          ...+.......++.++++|+.|||   +.+|+||||||+||+          |||+++......   
T Consensus        82 ~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~---  155 (290)
T cd05580          82 YVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRT---  155 (290)
T ss_pred             cCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCCC---
Confidence            221          234566777889999999999996   578999999999998          999987764431   


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                       ....|+++|+|||++
T Consensus       156 -~~~~~~~~y~aPE~~  170 (290)
T cd05580         156 -YTLCGTPEYLAPEII  170 (290)
T ss_pred             -CCCCCCccccChhhh
Confidence             223489999999963

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.67  E-value=3.8e-16  Score=166.37  Aligned_cols=147  Identities=26%  Similarity=0.410  Sum_probs=109.2

Q ss_pred             cccceEecCCceEEEEEEe-----cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ceee-
Q 047196          678 SKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKAL-  748 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~l-  748 (827)
                      ...+.||+|+||+||+++.     .+++.||+|.+.... ....+.|.+|++++++++|||++++.+++....  ..++ 
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv   86 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLI   86 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEE
Confidence            6778999999999988653     357899999987543 234567899999999999999999999886543  2222 


Q ss_pred             -eeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          749 -DCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       749 -~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                       ++...       ....+++.+...++.++++|++|||   +.+|+||||||+||+          |||+++........
T Consensus        87 ~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~  163 (283)
T cd05080          87 MEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY  163 (283)
T ss_pred             ecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccChheEEEcCCCcEEEeecccccccCCcchh
Confidence             22211       1234678888999999999999996   668999999999998          99999876533221


Q ss_pred             c--cccceecccccccccC
Q 047196          811 I--QTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~--~~~~~gt~~Y~APE~l  827 (827)
                      .  .....++..|+|||++
T Consensus       164 ~~~~~~~~~~~~~~~PE~~  182 (283)
T cd05080         164 YRVREDGDSPVFWYAVECL  182 (283)
T ss_pred             hccCCCCCCCceeeCHhHh
Confidence            1  1112256779999963

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.67  E-value=6.1e-16  Score=163.23  Aligned_cols=149  Identities=22%  Similarity=0.302  Sum_probs=110.6

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-----hHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Ccee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-----AMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKA  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~~  747 (827)
                      +|...+.||+|+||.||+|... +|+.||+|++....     ....+.+.+|++++++++|+|++++.+++...  ...+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            6788899999999999999864 68999999885321     23346789999999999999999999987653  2222


Q ss_pred             eeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          748 LDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       748 l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +...+..          ...+++.....++.++++|++|||   +.+|+||||||+||+          |||+++.+...
T Consensus        83 l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~  159 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTI  159 (266)
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCCCccccccc
Confidence            2221111          124567777889999999999995   678999999999988          99998765332


Q ss_pred             Ccc--ccccceecccccccccC
Q 047196          808 RSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ...  ......++.+|+|||++
T Consensus       160 ~~~~~~~~~~~~~~~y~aPE~~  181 (266)
T cd06651         160 CMSGTGIRSVTGTPYWMSPEVI  181 (266)
T ss_pred             cccCCccccCCccccccCHHHh
Confidence            111  11123478999999964

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.67  E-value=4.6e-16  Score=162.90  Aligned_cols=148  Identities=24%  Similarity=0.305  Sum_probs=114.7

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||+|++...  .....+++.+|++++++++|||++++++++...+..++...+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            3667789999999999999864 6899999998643  234567899999999999999999999998877655443322


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+.+.....++.+++.|+.|||   +.+|+||||||+||+          |||+++.+......
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~  157 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNF  157 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCCCEEEcccccceeccCccch
Confidence            21            234566677889999999999995   678999999999997          99998876543221


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....|++.|+|||++
T Consensus       158 -~~~~~~~~~y~aPE~~  173 (256)
T cd08529         158 -ANTIVGTPYYLSPELC  173 (256)
T ss_pred             -hhccccCccccCHHHh
Confidence             1223488999999973

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.67  E-value=4.2e-16  Score=168.22  Aligned_cols=145  Identities=28%  Similarity=0.342  Sum_probs=114.1

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      +.|...+.||+|+||.||+|+.. +|+.||+|++...   .....+++.+|++++++++|||++++.++|...+..++..
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            45788899999999999999864 6899999998643   2334467899999999999999999999998776555432


Q ss_pred             ecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+.          ....+.+.....++.|++.|+.|||   +.+|+||||||+||+          |||+++.....   
T Consensus        95 e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~---  168 (307)
T cd06607          95 EYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA---  168 (307)
T ss_pred             HhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEECCCCCEEEeecCcceecCCC---
Confidence            221          1234677788889999999999995   678999999999998          89988755322   


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ....+++.|+|||++
T Consensus       169 --~~~~~~~~y~aPE~~  183 (307)
T cd06607         169 --NSFVGTPYWMAPEVI  183 (307)
T ss_pred             --CCccCCccccCceee
Confidence              123478899999963

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.67  E-value=8e-17  Score=169.12  Aligned_cols=139  Identities=24%  Similarity=0.367  Sum_probs=103.2

Q ss_pred             ceEecCCceEEEEEEecC--------CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--ee
Q 047196          681 NLIGVGSFGSVYKGRLHD--------GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DC  750 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~  750 (827)
                      +.||+|+||.||+|..+.        ...||+|.+........+++..|+.+++.++|||+|++++++..++..++  ++
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            368999999999997532        23488898865555556788999999999999999999999987654444  22


Q ss_pred             ecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------------eeccccc
Q 047196          751 LHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------------DFGIGRL  803 (827)
Q Consensus       751 l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------------DFGla~~  803 (827)
                      ...         ....+++.....++.|++.|++|||   +++|+||||||+||+                  |||++..
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~  157 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISIT  157 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEecccccccc
Confidence            221         1224677788889999999999995   678999999999988                  4444432


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...     .....+++.|+|||++
T Consensus       158 ~~~-----~~~~~~~~~y~aPE~~  176 (258)
T cd05078         158 VLP-----KEILLERIPWVPPECI  176 (258)
T ss_pred             cCC-----chhccccCCccCchhc
Confidence            211     1123478899999974

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.67  E-value=2.6e-16  Score=164.92  Aligned_cols=149  Identities=26%  Similarity=0.420  Sum_probs=112.4

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      .+|+..+.||+|+||.||+|.+.+++.+|||++..... ....|.+|++++++++||+++++++++......++...+..
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   82 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFME   82 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCC
Confidence            35777889999999999999887788999999865432 24578999999999999999999999877665544322221


Q ss_pred             -----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          755 -----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       755 -----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                 ...+.+.....++.+++.|++|||   +.+++||||||+||+          |||+++...........
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~  159 (256)
T cd05112          83 HGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSST  159 (256)
T ss_pred             CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccccceEEEcCCCeEEECCCcceeecccCcccccC
Confidence                       233567777889999999999995   567999999999988          89988765432211111


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++.+|+|||++
T Consensus       160 ~~~~~~~~~aPe~~  173 (256)
T cd05112         160 GTKFPVKWSSPEVF  173 (256)
T ss_pred             CCccchhhcCHhHh
Confidence            22356789999963

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.67  E-value=3.7e-16  Score=164.89  Aligned_cols=149  Identities=24%  Similarity=0.381  Sum_probs=113.6

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc------hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC------AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~------~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      +|+..+.||+|+||.||+|+. .+++.||+|++....      ....+.+.+|++++++++|+|+|++++++.+.+...+
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            367788999999999999985 578999999986432      1235679999999999999999999999987765444


Q ss_pred             eeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCC
Q 047196          749 DCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGD  807 (827)
Q Consensus       749 ~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~  807 (827)
                      ...+...          ..+++.....++.++++|++|||   +.+|+||||||+||+           |||.++.....
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~  157 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAK  157 (268)
T ss_pred             EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEcccccccccccc
Confidence            3333221          24566677889999999999995   678999999999988           88888766432


Q ss_pred             Ccc---ccccceecccccccccC
Q 047196          808 RSM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~---~~~~~~gt~~Y~APE~l  827 (827)
                      ...   ......||..|+|||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~PE~~  180 (268)
T cd06630         158 GTGAGEFQGQLLGTIAFMAPEVL  180 (268)
T ss_pred             cccCCccccccccccceeCHhHh
Confidence            111   11223478999999963

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.67  E-value=2.4e-16  Score=172.43  Aligned_cols=150  Identities=24%  Similarity=0.405  Sum_probs=112.7

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----K  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----~  746 (827)
                      +++|...+.||+|+||.||+|+. .+|+.||||++... ......++.+|++++++++|+|++++++++....+     .
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            46788899999999999999985 46899999998642 23345678899999999999999999988765432     1


Q ss_pred             ee--eeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          747 AL--DCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       747 ~l--~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ++  +++..      ....+.+.....++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus        84 ~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~  160 (336)
T cd07849          84 YIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEH  160 (336)
T ss_pred             EEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEECcccceeeccccc
Confidence            21  22211      1234667777889999999999995   678999999999997          999987654322


Q ss_pred             ccc--cccceeccccccccc
Q 047196          809 SMI--QTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~~--~~~~~gt~~Y~APE~  826 (827)
                      ...  .....||..|||||+
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~  180 (336)
T cd07849         161 DHTGFLTEYVATRWYRAPEI  180 (336)
T ss_pred             cccCCcCCcCcCCCccChHH
Confidence            211  122358999999996

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.67  E-value=3.5e-16  Score=164.40  Aligned_cols=150  Identities=27%  Similarity=0.474  Sum_probs=113.9

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .++|...+.||+|+||.||+|...+++.||||.+.... ...+++.+|++++++++|+|++++++++......++...+.
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   83 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYM   83 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEecc
Confidence            35788889999999999999998778889999987543 23467899999999999999999999987655444322221


Q ss_pred             C------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 T------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .            ...+.+.+...++.+++.|++|||   +.+|+||||||+||+          |||+++....+....
T Consensus        84 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~  160 (261)
T cd05034          84 SKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTA  160 (261)
T ss_pred             CCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcchheEEEcCCCCEEECccccceeccchhhhh
Confidence            1            124677788899999999999995   667999999999988          999887664322111


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++..|+|||++
T Consensus       161 ~~~~~~~~~y~~PE~~  176 (261)
T cd05034         161 REGAKFPIKWTAPEAA  176 (261)
T ss_pred             hhccCCCccccCHHHh
Confidence            1112246789999963

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.67  E-value=2.7e-16  Score=165.89  Aligned_cols=149  Identities=29%  Similarity=0.417  Sum_probs=114.2

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||.||+|+. .+|+.||||.+...   .....+++.+|+++++.++|+|++++++++..++..++..
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            4577788999999999999985 57899999988642   2234567899999999999999999999987766544322


Q ss_pred             eccC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          751 LHST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       751 l~~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+..              ...+.+.....++.++++|++|||   +.+|+|+||||+||+          |||+++....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence            2111              223567777889999999999995   678999999999997          9998876643


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... .....|+.+|+|||++
T Consensus       159 ~~~~-~~~~~~~~~~~ape~~  178 (267)
T cd08229         159 KTTA-AHSLVGTPYYMSPERI  178 (267)
T ss_pred             CCcc-cccccCCcCccCHHHh
Confidence            3221 1223588999999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.66  E-value=2.4e-16  Score=177.37  Aligned_cols=152  Identities=18%  Similarity=0.261  Sum_probs=102.5

Q ss_pred             HhhcccccceEecCCceEEEEEEe-----------------cCCcEEEEEEEcccchHHHH--------------HHHHH
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-----------------HDGIEVAIKVFHQNCAMALK--------------SFEAE  721 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-----------------~~g~~vAvK~l~~~~~~~~~--------------~~~~E  721 (827)
                      ..++|+..++||+|+||.||+|.+                 .+++.||||++........+              .+..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            356899999999999999999964                 23568999998643322222              34457


Q ss_pred             HHHHHhcCCCCc-----eEEEeeeecC--------CceeeeeeccCC---------------------------------
Q 047196          722 CEVMKNIRHRNH-----VKRISSCSNE--------DFKALDCLHSTN---------------------------------  755 (827)
Q Consensus       722 i~~l~~l~H~ni-----v~~~~~~~~~--------~~~~l~~l~~~~---------------------------------  755 (827)
                      +.++.+++|.++     ++++++|...        ...++.+.+..+                                 
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            788888887765     5667776431        122232222111                                 


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccceeccccccc
Q 047196          756 -CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP  824 (827)
Q Consensus       756 -~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt~~Y~AP  824 (827)
                       ..+++.....++.++++++.|+|   +.+|+||||||+||+          |||+++..............+|+.|+||
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH---~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aP  379 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPP  379 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeCh
Confidence             12245556778999999999996   567999999999998          9999976543222111122358899999


Q ss_pred             ccC
Q 047196          825 GLL  827 (827)
Q Consensus       825 E~l  827 (827)
                      |++
T Consensus       380 E~l  382 (507)
T PLN03224        380 EEL  382 (507)
T ss_pred             hhh
Confidence            974

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.66  E-value=2.4e-16  Score=165.39  Aligned_cols=137  Identities=26%  Similarity=0.444  Sum_probs=101.7

Q ss_pred             ceEecCCceEEEEEEecC-C----------cEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee-
Q 047196          681 NLIGVGSFGSVYKGRLHD-G----------IEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-  748 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~-g----------~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l-  748 (827)
                      +.||+|+||.||+|+.++ +          ..||+|++...... .+.|.+|++++++++|+|++++++++.. ...++ 
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEE
Confidence            468999999999998754 3          25788877544332 6789999999999999999999999876 33333 


Q ss_pred             -eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------------eeccc
Q 047196          749 -DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------------DFGIG  801 (827)
Q Consensus       749 -~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------------DFGla  801 (827)
                       ++...         ....+.+..+..++.+++.||+|||   +++|+||||||+||+                 |||++
T Consensus        79 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a  155 (259)
T cd05037          79 EEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIP  155 (259)
T ss_pred             EEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---hCCeecccCccceEEEecCccccCCceeEEeCCCCcc
Confidence             22211         1124667778899999999999995   678999999999987                 56666


Q ss_pred             ccccCCCccccccceecccccccccC
Q 047196          802 RLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +....     .....++..|+|||++
T Consensus       156 ~~~~~-----~~~~~~~~~y~aPE~~  176 (259)
T cd05037         156 ITVLS-----REERVERIPWIAPECI  176 (259)
T ss_pred             ccccc-----ccccccCCCccChhhh
Confidence            54332     1123467889999974

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.66  E-value=4.6e-16  Score=169.98  Aligned_cols=150  Identities=27%  Similarity=0.426  Sum_probs=110.5

Q ss_pred             hcccccceEecCCceEEEEEEec--------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH--------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      .+|...+.||+|+||.||+|+..        .+..||+|.+.... ....+++.+|+++++++ +|+||++++++|...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            45778899999999999999742        12469999886532 33457899999999999 7999999999998766


Q ss_pred             ceeeeeeccC--------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          745 FKALDCLHST--------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       745 ~~~l~~l~~~--------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                      ..++...+..                          ...+.+.+...++.++++|++|||   +++|+||||||+||+  
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nill~  168 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVT  168 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEc
Confidence            4443222111                          123567778889999999999995   678999999999998  


Q ss_pred             --------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                              |||+++......... .....++..|||||++
T Consensus       169 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  208 (334)
T cd05100         169 EDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEAL  208 (334)
T ss_pred             CCCcEEECCcccceecccccccccccCCCcCceEcCHHHh
Confidence                    999987654322111 1112246789999974

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.66  E-value=5.4e-16  Score=163.48  Aligned_cols=149  Identities=29%  Similarity=0.401  Sum_probs=115.1

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||.||+|... +|+.||+|.++..   .....+++.+|++++++++|+++++.++++...+...+..
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            56888899999999999999875 7899999988532   2334568999999999999999999999988766554422


Q ss_pred             eccC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          751 LHST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       751 l~~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+..              ...+.+.+...++.++++|++|||   +.+|+||||||+||+          |||+++.+..
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence            2211              123566777889999999999995   678999999999988          9998876543


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... .....+++.|+|||++
T Consensus       159 ~~~~-~~~~~~~~~y~apE~~  178 (267)
T cd08224         159 KTTA-AHSLVGTPYYMSPERI  178 (267)
T ss_pred             CCcc-cceecCCccccCHHHh
Confidence            3221 1223488999999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.66  E-value=1.1e-16  Score=170.49  Aligned_cols=148  Identities=26%  Similarity=0.364  Sum_probs=112.5

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||+|++....  ......+.+|++++++++|+|++++++++.+....++...+
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            3667788999999999999864 68999999986432  12235678899999999999999999988776654442222


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ....+++.....++.++++|+.|||   +++|+||||||+||+          |||+++........ .
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~  156 (284)
T cd07839          81 CDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRC-Y  156 (284)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCC-c
Confidence            1          1234677778899999999999996   568999999999998          99998865432221 1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....+++.|+|||++
T Consensus       157 ~~~~~~~~y~aPE~~  171 (284)
T cd07839         157 SAEVVTLWYRPPDVL  171 (284)
T ss_pred             CCCccccCCcChHHH
Confidence            223478999999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.66  E-value=5.1e-16  Score=168.10  Aligned_cols=151  Identities=27%  Similarity=0.429  Sum_probs=111.2

Q ss_pred             hhcccccceEecCCceEEEEEEec--------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecC
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH--------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNE  743 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~  743 (827)
                      .++|...+.||+|+||.||+|+..        .+..||+|++.... .....++.+|+++++++ +|||||+++++|...
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            357888899999999999999741        24579999986532 34456789999999999 699999999998776


Q ss_pred             CceeeeeeccC--------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          744 DFKALDCLHST--------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       744 ~~~~l~~l~~~--------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                      ...++...+..                          ...+.+.+...++.+++.|++|||   +++|+||||||+||+ 
T Consensus        91 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill  167 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLV  167 (314)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeeccccceeEEE
Confidence            64433222111                          123667778889999999999995   678999999999998 


Q ss_pred             ---------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 ---------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                               |||+++......... .....++..|||||++
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  208 (314)
T cd05099         168 TEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEAL  208 (314)
T ss_pred             cCCCcEEEccccccccccccccccccccCCCCccccCHHHH
Confidence                     999998664322111 1111245689999963

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.66  E-value=3.3e-16  Score=168.03  Aligned_cols=149  Identities=22%  Similarity=0.365  Sum_probs=110.3

Q ss_pred             hcccccceEecCCceEEEEEEec-----------------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEE
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-----------------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKR  736 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-----------------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~  736 (827)
                      ++|+..+.||+|+||.||+++..                 ++..||||++.... ....++|.+|++++++++|+|++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            46888899999999999998532                 24569999987543 3345689999999999999999999


Q ss_pred             EeeeecCCceeeeeeccCC---------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCcce
Q 047196          737 ISSCSNEDFKALDCLHSTN---------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNV  795 (827)
Q Consensus       737 ~~~~~~~~~~~l~~l~~~~---------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NI  795 (827)
                      ++++...+..++...+...                     ..+++.....++.+++.|++|||   +.+|+||||||+||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dlkp~Ni  161 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS---SLNFVHRDLATRNC  161 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCeecccCChheE
Confidence            9998776654442222111                     12445677889999999999996   66899999999998


Q ss_pred             e----------eecccccccCCCccc-cccceeccccccccc
Q 047196          796 F----------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       796 l----------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                      +          |||+++.+....... .....+++.|+|||+
T Consensus       162 li~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~  203 (296)
T cd05095         162 LVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWES  203 (296)
T ss_pred             EEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHH
Confidence            8          999988654332211 111224678999995

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.66  E-value=5.3e-16  Score=162.59  Aligned_cols=147  Identities=27%  Similarity=0.342  Sum_probs=113.6

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-----hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-----AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      +|+..+.||+|+||+||+|... +++.||+|++....     ....+.+.+|++++++++|+|++++.+++......++.
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            3667789999999999999875 78999999986432     23456799999999999999999999998876654443


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+..          ...+++.....++.++++|++|||   +.+|+|+||||+||+          |||+++...... 
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~-  156 (258)
T cd06632          81 LELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS-  156 (258)
T ss_pred             EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccceeccccc-
Confidence            32221          123567777889999999999996   568999999999997          899887654332 


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                       ......|+..|+|||++
T Consensus       157 -~~~~~~~~~~y~~pe~~  173 (258)
T cd06632         157 -FAKSFKGSPYWMAPEVI  173 (258)
T ss_pred             -cccccCCCcceeCHHHh
Confidence             11223478999999963

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.5e-18  Score=156.65  Aligned_cols=161  Identities=26%  Similarity=0.478  Sum_probs=144.7

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      .++.|.||+|+++ .+|..+..+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|++|||.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            6788899999998 67778899999999999999998 67889999999999999999998 789999999999999999


Q ss_pred             CCcccc-cCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeec
Q 047196          461 GNKFSG-SIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGD  539 (827)
Q Consensus       461 ~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~  539 (827)
                      +|++.. .+|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- .+|.+++.+..|++|.+.+|.++ .
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence            999975 46888888999999999999997 57888999999999999999986 58999999999999999999999 6


Q ss_pred             ccccccCC
Q 047196          540 IPSTIGDL  547 (827)
Q Consensus       540 ip~~~~~l  547 (827)
                      +|++++++
T Consensus       188 lppel~~l  195 (264)
T KOG0617|consen  188 LPPELANL  195 (264)
T ss_pred             cChhhhhh
Confidence            78777765

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.66  E-value=4.5e-16  Score=167.60  Aligned_cols=148  Identities=28%  Similarity=0.470  Sum_probs=109.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCc--EEEEEEEccc-chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGI--EVAIKVFHQN-CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .+|+..+.||+|+||.||+|+.+ +|.  .+|+|++... .....+++.+|++++.++ +|+|++++++++..++..++.
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            56788899999999999999864 454  4688877643 234456889999999999 899999999998776655443


Q ss_pred             eeccCC--------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          750 CLHSTN--------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       750 ~l~~~~--------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                      ..+...                          ..+.+.+...++.++++|++|||   +++|+||||||+||+       
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~~~  163 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA  163 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEecCCCcE
Confidence            222111                          13567778899999999999995   678999999999998       


Q ss_pred             ---eecccccccCCCccccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                         |||+++.......  .....++..|+|||++
T Consensus       164 kl~dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~  195 (303)
T cd05088         164 KIADFGLSRGQEVYVK--KTMGRLPVRWMAIESL  195 (303)
T ss_pred             EeCccccCcccchhhh--cccCCCcccccCHHHH
Confidence               9998864321111  1112246789999963

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.66  E-value=3.2e-16  Score=166.99  Aligned_cols=148  Identities=30%  Similarity=0.432  Sum_probs=113.4

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee--e
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD--C  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~--~  750 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|||++++++++.+.+..++.  +
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            3777889999999999999864 68999999986432  22335788999999999999999999998776655443  2


Q ss_pred             ecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          751 LHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       751 l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +..         ....+.+.....++.++++|++|||   +++++||||||+||+          |||+++........ 
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~-  156 (284)
T cd07860          81 LHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT-  156 (284)
T ss_pred             cccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccc-
Confidence            211         1234677788899999999999996   568999999999988          89988765432221 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++++|+|||++
T Consensus       157 ~~~~~~~~~y~aPE~~  172 (284)
T cd07860         157 YTHEVVTLWYRAPEIL  172 (284)
T ss_pred             cccccccccccCCeEE
Confidence            1223478899999963

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.66  E-value=4.1e-16  Score=164.80  Aligned_cols=149  Identities=27%  Similarity=0.463  Sum_probs=111.3

Q ss_pred             cccccceEecCCceEEEEEEec-CC---cEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DG---IEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      +|+..+.||+|+||.||+|+.. +|   ..||||++... .....++|..|++++++++|||++++.+++..+...++..
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEE
Confidence            4677889999999999999864 33   36999998654 3445678999999999999999999999987766544422


Q ss_pred             eccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          751 LHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       751 l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      .+..           ...+++.+...++.++++|++|||   +.+++||||||+||+          |||+++.......
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~  161 (269)
T cd05065          85 EFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS  161 (269)
T ss_pred             ecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccChheEEEcCCCcEEECCCccccccccCcc
Confidence            2211           234567778899999999999996   578999999999987          9999876643322


Q ss_pred             cc-cccce---ecccccccccC
Q 047196          810 MI-QTETL---VTIGYMAPGLL  827 (827)
Q Consensus       810 ~~-~~~~~---gt~~Y~APE~l  827 (827)
                      .. .....   .+..|+|||++
T Consensus       162 ~~~~~~~~~~~~~~~y~~PE~~  183 (269)
T cd05065         162 DPTYTSSLGGKIPIRWTAPEAI  183 (269)
T ss_pred             ccccccccCCCcceeecCHhHh
Confidence            11 11111   24579999974

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.66  E-value=3.3e-16  Score=167.73  Aligned_cols=149  Identities=26%  Similarity=0.341  Sum_probs=113.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Cceee-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKAL-  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~~l-  748 (827)
                      ++|+..+.||+|+||.||+|+.+ +++.||||++.....  .....+.+|++++++++|||++++.+++...  ...++ 
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            46888899999999999999875 588999999864332  2234577899999999999999999988765  33333 


Q ss_pred             -eeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          749 -DCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 -~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                       +++..        ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++.......
T Consensus        85 ~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  161 (293)
T cd07843          85 MEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLK  161 (293)
T ss_pred             ehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCcc
Confidence             22211        1224677888899999999999996   568999999999998          9999887654322


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . .....+++.|+|||++
T Consensus       162 ~-~~~~~~~~~~~aPE~~  178 (293)
T cd07843         162 P-YTQLVVTLWYRAPELL  178 (293)
T ss_pred             c-cccccccccccCchhh
Confidence            1 1223478899999963

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.66  E-value=1.9e-16  Score=168.91  Aligned_cols=148  Identities=31%  Similarity=0.431  Sum_probs=115.3

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|..+ +++.||+|++....  ....+.+.+|++++++++|+|++++++++..+...++...+
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence            5777899999999999999875 58999999875432  22345788999999999999999999998776655543322


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+++.....++.++++|++|||   +.+|+|||+||+||+          |||+++.+...... .
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~-~  157 (286)
T cd07846          82 VDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV-Y  157 (286)
T ss_pred             CCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccc-c
Confidence            21          224678888999999999999996   568999999999988          99998876443321 2


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++.+|+|||++
T Consensus       158 ~~~~~~~~y~aPE~~  172 (286)
T cd07846         158 TDYVATRWYRAPELL  172 (286)
T ss_pred             CcccceeeccCcHHh
Confidence            234578999999963

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.66  E-value=3.9e-16  Score=166.41  Aligned_cols=148  Identities=25%  Similarity=0.289  Sum_probs=114.9

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..+.||+|+||+||+|+.. +|+.||+|++.... ....+.+.+|+++++.++|+|++++++++...+..++...+
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            45777789999999999999864 68899999876542 33456899999999999999999999999887766554433


Q ss_pred             cCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 STN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ...          ..+.+.....++.+++.|+.|||.  .++|+||||||+||+          |||+++.......   
T Consensus        85 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~---  159 (284)
T cd06620          85 MDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIA---  159 (284)
T ss_pred             CCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhcc---
Confidence            322          234566677899999999999984  347999999999988          9998865432211   


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ...+|+..|+|||++
T Consensus       160 ~~~~~~~~~~aPE~~  174 (284)
T cd06620         160 DTFVGTSTYMSPERI  174 (284)
T ss_pred             CccccCcccCCHHHH
Confidence            123589999999973

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.66  E-value=3.9e-16  Score=169.65  Aligned_cols=150  Identities=27%  Similarity=0.354  Sum_probs=116.5

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ....|.....||+|.|++|..|+. .+|..||||.+++..  ....+.+.+|+++|+.+.|||||+++.+...+...++.
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV  133 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLV  133 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEE
Confidence            345688889999999999999985 468999999997643  33456689999999999999999999998876655543


Q ss_pred             eeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+...          +.........+..|+..+++|+   |++.|||||||++||+          |||++..+.... 
T Consensus       134 ~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYc---H~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~-  209 (596)
T KOG0586|consen  134 MEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYC---HSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGL-  209 (596)
T ss_pred             EEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHH---hhcceeccccchhhcccccccceeeeccccceeecccc-
Confidence            333221          2222344556788999999999   5788999999999998          999998876332 


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                       ...+.+|++.|.|||+.
T Consensus       210 -~lqt~cgsppyAaPEl~  226 (596)
T KOG0586|consen  210 -MLQTFCGSPPYAAPELF  226 (596)
T ss_pred             -cccccCCCCCccChHhh
Confidence             22346799999999974

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.66  E-value=4.1e-16  Score=166.85  Aligned_cols=149  Identities=28%  Similarity=0.407  Sum_probs=112.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..+.||+|+||.||+|+.+ +++.||||.+..... .....+.+|++++++++|+|++++.+++...+..++...+
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            56888899999999999999865 689999999865322 1234567899999999999999999998877655543322


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+.+.....++.++++||.|||   +.+|+||||||+||+          |||+++....... ..
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~-~~  160 (291)
T cd07844          85 LDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK-TY  160 (291)
T ss_pred             CCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCHHHEEEcCCCCEEECccccccccCCCCc-cc
Confidence            21          123456667788999999999995   678999999999998          9998865432211 11


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++..|+|||++
T Consensus       161 ~~~~~~~~~~aPE~~  175 (291)
T cd07844         161 SNEVVTLWYRPPDVL  175 (291)
T ss_pred             cccccccccCCcHHh
Confidence            223468899999963

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.66  E-value=9.3e-16  Score=161.65  Aligned_cols=148  Identities=24%  Similarity=0.387  Sum_probs=112.4

Q ss_pred             ccccceEecCCceEEEEEEecCCcEEEEEEEcccc------hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC------AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~------~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      |...+.||+|+||.||+|...+|+.||||.+....      ....+.+.+|++++++++|+|++++.+++.+.+..++..
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            56778999999999999988889999999886431      223456899999999999999999999998876555533


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc-
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS-  809 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~-  809 (827)
                      .+...          ..+.+.....++.+++.|++|||   +.+|+|+||||+||+          |||+++....... 
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  158 (265)
T cd06631          82 EFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLH  158 (265)
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcccc
Confidence            33221          23456666788999999999996   567999999999988          9998876532111 


Q ss_pred             ----cccccceecccccccccC
Q 047196          810 ----MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ----~~~~~~~gt~~Y~APE~l  827 (827)
                          .......|+..|+|||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~pe~~  180 (265)
T cd06631         159 GTHSNMLKSMHGTPYWMAPEVI  180 (265)
T ss_pred             ccccccccccCCCccccChhhh
Confidence                011123478999999974

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.66  E-value=3.1e-16  Score=164.44  Aligned_cols=143  Identities=25%  Similarity=0.411  Sum_probs=108.2

Q ss_pred             ceEecCCceEEEEEEecC--C--cEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeecc
Q 047196          681 NLIGVGSFGSVYKGRLHD--G--IEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLHS  753 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~--g--~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~~  753 (827)
                      ++||+|+||.||+|.+.+  +  ..||||.+..... ...++|.+|++++++++|+|+|++++.+.. ...++  ++...
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            468999999999998643  3  3699999976654 566789999999999999999999998876 33322  22111


Q ss_pred             ---------CC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc--
Q 047196          754 ---------TN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI--  811 (827)
Q Consensus       754 ---------~~-~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~--  811 (827)
                               .. ..+.+.....++.++++||+|||   +++++||||||+||+          |||+++.+.......  
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  156 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVM  156 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccccceec
Confidence                     11 24677888889999999999995   678999999999988          999998775432221  


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++.+|+|||++
T Consensus       157 ~~~~~~~~~y~~pE~~  172 (257)
T cd05040         157 EEHLKVPFAWCAPESL  172 (257)
T ss_pred             ccCCCCCceecCHHHh
Confidence            1122367899999963

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.66  E-value=5.2e-16  Score=166.65  Aligned_cols=148  Identities=29%  Similarity=0.391  Sum_probs=113.4

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccchH-----HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAM-----ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      +|+..+.||+|+||.||+|... +|+.||||++......     ....+..|++++++++|+|++++++++.+.+..++.
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            3667788999999999999864 6899999998754322     335677899999999999999999999876654442


Q ss_pred             eecc---------CC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHS---------TN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~---------~~-~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+.         .. ..+++.....++.++++||+|||   +.+|+||||||+||+          |||+++.......
T Consensus        81 ~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~  157 (298)
T cd07841          81 FEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR  157 (298)
T ss_pred             EcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCc
Confidence            2221         11 24678888899999999999995   678999999999988          9999877654322


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . .....+++.|+|||++
T Consensus       158 ~-~~~~~~~~~y~aPE~~  174 (298)
T cd07841         158 K-MTHQVVTRWYRAPELL  174 (298)
T ss_pred             c-ccccccceeeeCHHHH
Confidence            1 1223468899999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.66  E-value=6.2e-16  Score=164.86  Aligned_cols=149  Identities=32%  Similarity=0.411  Sum_probs=115.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|+||.||+|+.+ +|+.||+|++....  ....+.+.+|++++++++|+|++++++++......++...
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            35777889999999999999875 58999999986432  2234568899999999999999999999887665444222


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.          ....+++.....++.++++|++|||   +++|+||||||+||+          |||+++........ 
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~-  156 (286)
T cd07847          81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDD-  156 (286)
T ss_pred             ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCChhhEEEcCCCcEEECccccceecCCCccc-
Confidence            21          1234678888999999999999995   578999999999998          99998876543221 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++..|+|||++
T Consensus       157 ~~~~~~~~~~~aPE~~  172 (286)
T cd07847         157 YTDYVATRWYRAPELL  172 (286)
T ss_pred             ccCcccccccCCHHHH
Confidence            1223478899999963

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.66  E-value=1e-15  Score=160.38  Aligned_cols=148  Identities=22%  Similarity=0.297  Sum_probs=113.9

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..+.||+|+||.||+++.. ++..||+|.++.. .....+.+.+|++++++++|+|++++.+++...+..++...+.
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            3667789999999999999864 6889999998643 2344567889999999999999999999988777655533322


Q ss_pred             CC------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 TN------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ~~------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ..            ..+.......++.+++.|+.|||   +.+|+|+||||+||+          |||.++........ 
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~-  156 (255)
T cd08219          81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY-  156 (255)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCCcEEEcccCcceeecccccc-
Confidence            11            23455666788999999999995   678999999999998          99998766433221 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....|++.|+|||++
T Consensus       157 ~~~~~~~~~~~aPE~~  172 (255)
T cd08219         157 ACTYVGTPYYVPPEIW  172 (255)
T ss_pred             cccccCCccccCHHHH
Confidence            1224588999999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.66  E-value=4.7e-16  Score=170.47  Aligned_cols=147  Identities=26%  Similarity=0.404  Sum_probs=111.2

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----  745 (827)
                      ..+|...+.||+|+||.||+|+. .+|+.||||++....  ......+.+|++++++++|+|++++++++.....     
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            36888889999999999999986 468999999986432  2234568899999999999999999998764321     


Q ss_pred             ---eeeeeecc-----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          746 ---KALDCLHS-----TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       746 ---~~l~~l~~-----~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                         ..++++..     ....+.+.....++.++++|++|||   +.+|+||||||+||+          |||+++.....
T Consensus        94 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~  170 (342)
T cd07879          94 DFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAE  170 (342)
T ss_pred             eEEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCC
Confidence               11222211     1124667777889999999999995   678999999999998          99998764322


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .    ....++..|+|||++
T Consensus       171 ~----~~~~~~~~y~aPE~~  186 (342)
T cd07879         171 M----TGYVVTRWYRAPEVI  186 (342)
T ss_pred             C----CCceeeecccChhhh
Confidence            1    224578999999963

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.66  E-value=2.4e-16  Score=168.69  Aligned_cols=147  Identities=24%  Similarity=0.278  Sum_probs=113.8

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC-
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      |.....||+|+||.||++... ++..||||++........+.+.+|+.++++++|+|++++++.+...+..++...+.. 
T Consensus        24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~  103 (292)
T cd06658          24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG  103 (292)
T ss_pred             HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC
Confidence            333467999999999999864 688999999876555556778999999999999999999999887766555333322 


Q ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          755 --------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       755 --------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                              ...+++.+...++.++++|++|||   +++|+||||||+||+          |||++......... .....
T Consensus       104 ~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~-~~~~~  179 (292)
T cd06658         104 GALTDIVTHTRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPK-RKSLV  179 (292)
T ss_pred             CcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEccCcchhhccccccc-Cceee
Confidence                    134567778899999999999996   568999999999997          99988765433221 12245


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      |+..|+|||++
T Consensus       180 ~~~~y~aPE~~  190 (292)
T cd06658         180 GTPYWMAPEVI  190 (292)
T ss_pred             cCccccCHHHH
Confidence            89999999963

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.65  E-value=7.9e-16  Score=162.88  Aligned_cols=149  Identities=26%  Similarity=0.335  Sum_probs=111.6

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccch----------HHHHHHHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA----------MALKSFEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~----------~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      +|...+.||+|+||.||+|... +|+.||||+++....          ...+.+.+|++++++++|+|++++++++...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            3566789999999999999754 689999998753211          12356889999999999999999999988776


Q ss_pred             ceeeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          745 FKALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       745 ~~~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      ..++...+..          ...+++.....++.+++.|+.|||   +++++||||||+||+          |||+++..
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~  158 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGISKKS  158 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCChhhEEEcCCCeEEEeeccccccc
Confidence            5554332221          134566677789999999999995   678999999999988          99998765


Q ss_pred             cCCCccc-cccceecccccccccC
Q 047196          805 TGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ....... .....|+..|+|||++
T Consensus       159 ~~~~~~~~~~~~~~~~~y~~PE~~  182 (272)
T cd06629         159 DDIYDNDQNMSMQGSVFWMAPEVI  182 (272)
T ss_pred             cccccccccccccCCccccCHHHh
Confidence            3322111 1223478999999963

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.65  E-value=4.1e-16  Score=164.02  Aligned_cols=144  Identities=26%  Similarity=0.432  Sum_probs=103.7

Q ss_pred             ceEecCCceEEEEEEec----CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-ceee--eeec
Q 047196          681 NLIGVGSFGSVYKGRLH----DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FKAL--DCLH  752 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~~l--~~l~  752 (827)
                      +.||+|+||.||+|...    ++..||||++... .....+.+.+|+.++++++|||+++++++|...+ ..++  ++..
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46899999999999853    2457999998543 3345678899999999999999999999876433 2222  2221


Q ss_pred             c---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc--
Q 047196          753 S---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI--  811 (827)
Q Consensus       753 ~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~--  811 (827)
                      .         ......+.....++.++++|++|||   +.+|+||||||+||+          |||+++.........  
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  157 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVH  157 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCccccccccCCcceeec
Confidence            1         1223456667889999999999995   678999999999998          999987654322110  


Q ss_pred             -cccceecccccccccC
Q 047196          812 -QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 -~~~~~gt~~Y~APE~l  827 (827)
                       .....++..|+|||++
T Consensus       158 ~~~~~~~~~~y~aPE~~  174 (262)
T cd05058         158 NHTGAKLPVKWMALESL  174 (262)
T ss_pred             ccccCcCCccccChhHh
Confidence             1122357789999963

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.65  E-value=5.6e-16  Score=165.82  Aligned_cols=158  Identities=27%  Similarity=0.381  Sum_probs=119.0

Q ss_pred             cchhHHHHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeec
Q 047196          665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSN  742 (827)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~  742 (827)
                      ++.+++..++++|+..+.||+|+||.||+|.. .+++.||+|++.... .....+.+|+.+++++ +|+|++++++++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            34456666788999999999999999999986 468999999986432 2345678899999999 89999999999865


Q ss_pred             CC-------ceeeeeecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          743 ED-------FKALDCLHS------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       743 ~~-------~~~l~~l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                      .+       +..+++...            ....+.+.....++.+++.|++|||   +.+|+||||||+||+       
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~nili~~~~~~  167 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTEGGV  167 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCE
Confidence            43       122233221            1234667778889999999999995   678999999999997       


Q ss_pred             ---eecccccccCCCccccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                         |||+++........ .....|+..|+|||++
T Consensus       168 kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~  200 (291)
T cd06639         168 KLVDFGVSAQLTSTRLR-RNTSVGTPFWMAPEVI  200 (291)
T ss_pred             EEeecccchhccccccc-ccCccCCccccChhhh
Confidence               99998765432221 1223578999999963

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.65  E-value=7.4e-16  Score=182.56  Aligned_cols=148  Identities=26%  Similarity=0.306  Sum_probs=115.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+.. +++.||||++....   ....+.+.+|+++++.++|+|||++++++...+..++..
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            56888899999999999999875 68999999986432   233467899999999999999999999888776655544


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+...          ..+.+.....|+.+++.||+|||   ..+|+||||||+|||          |||+++........
T Consensus        84 Ey~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~~~~~  160 (669)
T cd05610          84 EYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLNRELN  160 (669)
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCccHHHEEEcCCCCEEEEeCCCCccccCCccc
Confidence            33222          23455667889999999999996   568999999999998          99999876543322


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                       ....++|+.|+|||.
T Consensus       161 -~~~~~~t~~~~~pe~  175 (669)
T cd05610         161 -MMDILTTPSMAKPKN  175 (669)
T ss_pred             -ccccccCccccCccc
Confidence             223458999999984

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.65  E-value=9.3e-17  Score=179.15  Aligned_cols=144  Identities=30%  Similarity=0.511  Sum_probs=106.5

Q ss_pred             ccccceEecCCce-EEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceeee-----
Q 047196          677 FSKENLIGVGSFG-SVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALD-----  749 (827)
Q Consensus       677 ~~~~~~iG~G~fg-~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l~-----  749 (827)
                      |...+++|.|+-| .||+|.+. |++||||++-...   ..-..+||..|+.-+ |||||++++.-.+..|.++.     
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e~---~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~  586 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEEF---FDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA  586 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC-CceehHHHHhhHh---HHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh
Confidence            5566789999987 59999985 6899999984432   234578999999884 99999998887777776652     


Q ss_pred             -----eeccC--C-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccccccC
Q 047196          750 -----CLHST--N-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLLTG  806 (827)
Q Consensus       750 -----~l~~~--~-~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~~~~~  806 (827)
                           ++...  . ..........+..|++.|+++||   +-+||||||||.|||               |||++|.+..
T Consensus       587 ~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~  663 (903)
T KOG1027|consen  587 CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAG  663 (903)
T ss_pred             hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHH---hcccccccCCCceEEEEccCCCcceeEEecccccccccCC
Confidence                 11111  0 01111334678889999999996   467999999999998               9999999877


Q ss_pred             CCccccc--cceecccccccccC
Q 047196          807 DRSMIQT--ETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~--~~~gt~~Y~APE~l  827 (827)
                      +......  ...||-||+|||++
T Consensus       664 ~~sS~~r~s~~sGt~GW~APE~L  686 (903)
T KOG1027|consen  664 GKSSFSRLSGGSGTSGWQAPEQL  686 (903)
T ss_pred             CcchhhcccCCCCcccccCHHHH
Confidence            6654322  23389999999974

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=7.3e-16  Score=163.34  Aligned_cols=148  Identities=28%  Similarity=0.303  Sum_probs=116.0

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..+.||.|+||.||+|+.. +++.||+|++.... ......+.+|++++++++|+|++++.+++.++...++...+.
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            5777788999999999999865 68999999986543 334567899999999999999999999988776555433222


Q ss_pred             C---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 T---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      .         ...+.+.....++.+++.|+.|||   +++|+||||||+||+          |||+++........ ...
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~-~~~  157 (274)
T cd06609          82 GGGSCLDLLKPGKLDETYIAFILREVLLGLEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSK-RNT  157 (274)
T ss_pred             CCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEcccccceeecccccc-ccc
Confidence            1         125677788899999999999995   678999999999988          99998876543221 122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..+++.|+|||++
T Consensus       158 ~~~~~~y~~PE~~  170 (274)
T cd06609         158 FVGTPFWMAPEVI  170 (274)
T ss_pred             ccCCccccChhhh
Confidence            3578899999974

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.65  E-value=4.4e-16  Score=164.53  Aligned_cols=143  Identities=20%  Similarity=0.326  Sum_probs=102.6

Q ss_pred             eEecCCceEEEEEEecCC---cEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCCC-
Q 047196          682 LIGVGSFGSVYKGRLHDG---IEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNC-  756 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~~~g---~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~~-  756 (827)
                      .||+|+||.||+|+..++   ..+++|.+.... ....+.|.+|+.+++.++|||+|++++.|......++...+...+ 
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            589999999999975433   356677765443 334568999999999999999999999998766554433322211 


Q ss_pred             -------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc-ccc
Q 047196          757 -------------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS-MIQ  812 (827)
Q Consensus       757 -------------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~-~~~  812 (827)
                                   ...+.....++.++++||+|||   +.+|+||||||+||+          |||+++....... ...
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  158 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETE  158 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcc
Confidence                         1223344678899999999996   567999999999997          9998864322111 111


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++..|+|||++
T Consensus       159 ~~~~~~~~y~aPE~~  173 (268)
T cd05086         159 DDKCVPLRWLAPELV  173 (268)
T ss_pred             cCCcCcccccCchhc
Confidence            223478899999973

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.65  E-value=6e-16  Score=163.82  Aligned_cols=147  Identities=27%  Similarity=0.430  Sum_probs=106.5

Q ss_pred             ccccceEecCCceEEEEEEec----CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----
Q 047196          677 FSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----  745 (827)
                      |...++||+|+||.||+|.+.    +++.||||++...  .....+++.+|++++++++|||++++++++...+.     
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            455678999999999999753    3688999998653  23345678999999999999999999998754321     


Q ss_pred             ---eeeeeecc--------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------ee
Q 047196          746 ---KALDCLHS--------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF  798 (827)
Q Consensus       746 ---~~l~~l~~--------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DF  798 (827)
                         .++++...              ....+.+.....++.+++.|++|||   +.+|+||||||+||+          ||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccchhhEEEcCCCCEEECcc
Confidence               11111110              0113566677889999999999995   568999999999998          99


Q ss_pred             cccccccCCCccc-cccceeccccccccc
Q 047196          799 GIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       799 Gla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                      |+++......... .....+++.|++||+
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~  186 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALES  186 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhH
Confidence            9988664322111 111235678999996

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.65  E-value=6.5e-16  Score=165.86  Aligned_cols=148  Identities=28%  Similarity=0.459  Sum_probs=107.4

Q ss_pred             hcccccceEecCCceEEEEEEec-CC--cEEEEEEEccc-chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DG--IEVAIKVFHQN-CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g--~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|+..++||+|+||.||+|... ++  ..+|+|.+... .....+.|.+|+++++++ +|||++++++++......++.
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            46778889999999999999865 34  34789888642 233456799999999999 799999999998776543332


Q ss_pred             eeccCC--------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          750 CLHSTN--------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       750 ~l~~~~--------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                      ..+...                          ..+.+.....++.+++.|++|||   +++|+||||||+||+       
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~  158 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLAS  158 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCCCeE
Confidence            221111                          13556677889999999999996   578999999999998       


Q ss_pred             ---eecccccccCCCccccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                         |||+++.......  ......+..|+|||++
T Consensus       159 kl~dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~  190 (297)
T cd05089         159 KIADFGLSRGEEVYVK--KTMGRLPVRWMAIESL  190 (297)
T ss_pred             EECCcCCCccccceec--cCCCCcCccccCchhh
Confidence               9998864321111  1111235679999973

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.65  E-value=1.1e-15  Score=160.21  Aligned_cols=148  Identities=22%  Similarity=0.330  Sum_probs=115.4

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..++||+|+||.||.++. .+++.||+|++...  .....+++.+|++++++++|+|++++++++.+.+..++...+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            477789999999999999985 46889999998643  234556789999999999999999999999887765543222


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+++.+...++.++++|++|||   +.+++||||||+||+          |||+++........
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~  157 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSM  157 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChHhEEEeCCCCEEECcCcceEEccccccc
Confidence            21            123567777889999999999995   568999999999988          99998876443321


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....|++.|+|||++
T Consensus       158 -~~~~~~~~~y~ape~~  173 (256)
T cd08221         158 -AETVVGTPYYMSPELC  173 (256)
T ss_pred             -ccccCCCccccCHhhc
Confidence             1234589999999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.65  E-value=6.4e-16  Score=167.41  Aligned_cols=148  Identities=30%  Similarity=0.420  Sum_probs=110.2

Q ss_pred             cccccceEecCCceEEEEEEec---CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Ccee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH---DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKA  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~~  747 (827)
                      +|+..+.||+|+||.||+|...   +++.||||++....   ....+.+.+|++++++++|||++++++++...  ...+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            3667788999999999999864   47899999987632   23345678899999999999999999999876  4333


Q ss_pred             eeeeccC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eec
Q 047196          748 LDCLHST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFG  799 (827)
Q Consensus       748 l~~l~~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFG  799 (827)
                      +...+..              ...+.......++.|++.|++|||   +.+|+||||||+||+              |||
T Consensus        81 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg  157 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDLG  157 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEEcCCCCccceEEECCCc
Confidence            3222211              113455566789999999999995   678999999999987              888


Q ss_pred             ccccccCCCcc--ccccceeccccccccc
Q 047196          800 IGRLLTGDRSM--IQTETLVTIGYMAPGL  826 (827)
Q Consensus       800 la~~~~~~~~~--~~~~~~gt~~Y~APE~  826 (827)
                      +++........  ......+|+.|+|||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (316)
T cd07842         158 LARLFNAPLKPLADLDPVVVTIWYRAPEL  186 (316)
T ss_pred             cccccCCCcccccccCCccccccccCHHH
Confidence            88765432221  1122347899999996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.65  E-value=5.6e-16  Score=169.93  Aligned_cols=150  Identities=23%  Similarity=0.382  Sum_probs=113.3

Q ss_pred             HHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc--
Q 047196          671 FRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF--  745 (827)
Q Consensus       671 ~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~--  745 (827)
                      +...++|+..+.||+|+||.||+|.. .+|+.||||++...  .....+.+.+|++++++++|+||+++++++.....  
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            34567899999999999999999985 47899999998543  22334568899999999999999999998765321  


Q ss_pred             ------eeeeeec------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          746 ------KALDCLH------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       746 ------~~l~~l~------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                            ..+++..      .....+.+.....++.++++|++|||   +.+|+||||||+||+          |||+++.
T Consensus        91 ~~~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~  167 (343)
T cd07880          91 RFHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  167 (343)
T ss_pred             ccceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccccc
Confidence                  1112211      01235677778889999999999995   678999999999998          9999876


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....    ....+++.|+|||++
T Consensus       168 ~~~~~----~~~~~~~~y~aPE~~  187 (343)
T cd07880         168 TDSEM----TGYVVTRWYRAPEVI  187 (343)
T ss_pred             cccCc----cccccCCcccCHHHH
Confidence            53221    223478999999963

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.65  E-value=6.6e-16  Score=170.13  Aligned_cols=151  Identities=25%  Similarity=0.351  Sum_probs=113.4

Q ss_pred             HHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC----
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED----  744 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~----  744 (827)
                      ...++|+..+.||+|+||.||+|+. .+|+.||||++...  ......++.+|++++++++|+|++++++++....    
T Consensus        13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   92 (353)
T cd07850          13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEE   92 (353)
T ss_pred             hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccc
Confidence            3457799999999999999999986 47899999998642  2334456788999999999999999999875432    


Q ss_pred             ----ceeeeeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          745 ----FKALDCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       745 ----~~~l~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                          +..++++...     ...++..+...++.++++||+|||   +.+|+||||||+||+          |||+++...
T Consensus        93 ~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850          93 FQDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             cCcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence                2222332211     112566667789999999999996   568999999999998          999998754


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ....  .....++..|+|||++
T Consensus       170 ~~~~--~~~~~~~~~y~aPE~~  189 (353)
T cd07850         170 TSFM--MTPYVVTRYYRAPEVI  189 (353)
T ss_pred             CCCC--CCCCcccccccCHHHH
Confidence            3322  1223578999999963

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.65  E-value=4.8e-16  Score=170.11  Aligned_cols=152  Identities=29%  Similarity=0.386  Sum_probs=114.3

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC--ce
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNED--FK  746 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~--~~  746 (827)
                      ..++|+..+.||+|+||.||+|... +|+.||||++...  .......+.+|+++++++ +|+||+++++++...+  ..
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            3467888899999999999999865 6889999998542  223345678899999999 9999999999886543  12


Q ss_pred             e--eeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          747 A--LDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       747 ~--l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      +  +++...      ....+.+..+..++.+++.||+|||   +.+|+||||||+||+          |||+++......
T Consensus        85 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~  161 (337)
T cd07852          85 YLVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELE  161 (337)
T ss_pred             EEEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccchhcccccc
Confidence            2  233221      1125677788889999999999996   578999999999988          999988764432


Q ss_pred             cc----ccccceecccccccccC
Q 047196          809 SM----IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~----~~~~~~gt~~Y~APE~l  827 (827)
                      ..    ......||.+|+|||++
T Consensus       162 ~~~~~~~~~~~~~~~~y~aPE~~  184 (337)
T cd07852         162 ENPENPVLTDYVATRWYRAPEIL  184 (337)
T ss_pred             ccccCcchhcccccccccCceee
Confidence            21    11223489999999963

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.65  E-value=7.1e-16  Score=167.18  Aligned_cols=143  Identities=27%  Similarity=0.347  Sum_probs=112.1

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      |+..+.||+|+||.||+|+.. +|..||+|++...   .....+.+.+|++++++++|+|+|++++++.+++..++...+
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            667788999999999999864 6899999998643   223446788999999999999999999999877655443222


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ....+++.+...++.+++.|+.|||   +.+|+||||||+||+          |||+++.....     
T Consensus       107 ~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~-----  178 (317)
T cd06635         107 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA-----  178 (317)
T ss_pred             CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcccEEECCCCCEEEecCCCccccCCc-----
Confidence            1          1234677888889999999999995   678999999999998          88887654321     


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....|++.|+|||++
T Consensus       179 ~~~~~~~~y~aPE~~  193 (317)
T cd06635         179 NSFVGTPYWMAPEVI  193 (317)
T ss_pred             ccccCCccccChhhh
Confidence            223488999999973

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.65  E-value=9.4e-16  Score=163.28  Aligned_cols=148  Identities=26%  Similarity=0.299  Sum_probs=109.5

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHH-HHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEV-MKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~-l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|+.. +|+.||||++.... .....++..|+.+ ++..+|+|+|++++++......++...+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~   81 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEV   81 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhh
Confidence            5778889999999999999865 69999999986542 2233455566664 6777899999999999876654442221


Q ss_pred             c-------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          753 S-------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~-------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      .             ....+++.....++.|++.|++|||.  ..+++||||||+||+          |||+++.......
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~--~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~  159 (283)
T cd06617          82 MDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA  159 (283)
T ss_pred             hcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh--cCCeecCCCCHHHEEECCCCCEEEeecccccccccccc
Confidence            1             12345677778999999999999963  238999999999987          9999886543221


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                        .+...|+..|+|||++
T Consensus       160 --~~~~~~~~~y~aPE~~  175 (283)
T cd06617         160 --KTIDAGCKPYMAPERI  175 (283)
T ss_pred             --cccccCCccccChhhc
Confidence              1223478999999963

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.65  E-value=3.6e-16  Score=166.89  Aligned_cols=149  Identities=30%  Similarity=0.376  Sum_probs=116.0

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|... +++.||||++....  ....+.+.+|++++++++|+|++++++++...+..++...+
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            5778899999999999999865 58899999986432  23346789999999999999999999999876654443222


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+++.+...++.++++|++|||   +.+|+|||+||+||+          |||+++..........
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~  158 (288)
T cd07833          82 VERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPL  158 (288)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccc
Confidence            21          123567777889999999999996   568999999999988          9999887655433222


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++.+|+|||++
T Consensus       159 ~~~~~~~~~~~PE~~  173 (288)
T cd07833         159 TDYVATRWYRAPELL  173 (288)
T ss_pred             cCcccccCCcCCchh
Confidence            334578999999974

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.65  E-value=8.5e-16  Score=167.39  Aligned_cols=145  Identities=16%  Similarity=0.212  Sum_probs=105.0

Q ss_pred             cceEecC--CceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          680 ENLIGVG--SFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       680 ~~~iG~G--~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      .++||+|  +||+||+++. .+|+.||||++....  ....+.+.+|+++++.++|||||++++++..++..++...+..
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            4679999  7889999986 578999999986532  2334567889999999999999999999988775554332221


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc--
Q 047196          755 ------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM--  810 (827)
Q Consensus       755 ------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~--  810 (827)
                                  ...+++.....++.|+++||+|||   +.+|+||||||+||+          |||.+.........  
T Consensus        83 ~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~  159 (327)
T cd08227          83 YGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLR  159 (327)
T ss_pred             CCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCChhhEEEecCCcEEEcccchhhcccccccccc
Confidence                        123667778889999999999995   678999999999998          55543322111110  


Q ss_pred             ----ccccceecccccccccC
Q 047196          811 ----IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ----~~~~~~gt~~Y~APE~l  827 (827)
                          ......++..|+|||++
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~  180 (327)
T cd08227         160 VVHDFPKYSVKVLPWLSPEVL  180 (327)
T ss_pred             ccccccccccceecccChHHh
Confidence                01112467889999974

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.65  E-value=8.4e-16  Score=163.74  Aligned_cols=148  Identities=27%  Similarity=0.404  Sum_probs=113.7

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..+.||+|++|.||+|+.. +|+.||||++..... ...+.+.+|++++++++|+|++++++++...+..++...+.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            4777899999999999999975 689999999875432 23456788999999999999999999998776554433221


Q ss_pred             C------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 T------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .            ...+.+.....++.+++.|++|||   +.+|+||||||+||+          |||+++....... .
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~-~  156 (284)
T cd07836          81 DKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVN-T  156 (284)
T ss_pred             CccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcc-c
Confidence            1            124677788899999999999995   678999999999998          8888875533221 1


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++..|+|||++
T Consensus       157 ~~~~~~~~~y~~PE~~  172 (284)
T cd07836         157 FSNEVVTLWYRAPDVL  172 (284)
T ss_pred             cccccccccccChHHh
Confidence            1234578999999963

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=1.1e-15  Score=161.10  Aligned_cols=150  Identities=22%  Similarity=0.327  Sum_probs=111.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc-----chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc--e
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-----CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF--K  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-----~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~--~  746 (827)
                      .+|+..+.||+|+||.||+|+.. +|+.||+|++...     .....+.+.+|++++++++|+|++++++++...+.  .
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            46888899999999999999864 6899999987532     12345678999999999999999999998865431  2


Q ss_pred             --eeeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          747 --ALDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       747 --~l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                        ++++...        ....+.+.....++.+++.|+.|||   +.+|+||||||+||+          |||+++....
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  158 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQT  158 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcccccccccc
Confidence              2222211        1123566677889999999999995   678999999999998          9999876532


Q ss_pred             CCc--cccccceecccccccccC
Q 047196          807 DRS--MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~--~~~~~~~gt~~Y~APE~l  827 (827)
                      ...  .......|+..|+|||++
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~  181 (264)
T cd06653         159 ICMSGTGIKSVTGTPYWMSPEVI  181 (264)
T ss_pred             ccccCccccccCCcccccCHhhh
Confidence            111  111223488999999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.65  E-value=9.6e-16  Score=164.28  Aligned_cols=149  Identities=27%  Similarity=0.348  Sum_probs=111.9

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|++|.||+|+.. +|+.||||++....  ....+.+.+|++++++++|+|++++++++......++...
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            46888899999999999999865 68999999986432  2234568899999999999999999999987765554332


Q ss_pred             ccCC-----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCc
Q 047196          752 HSTN-----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRS  809 (827)
Q Consensus       752 ~~~~-----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~  809 (827)
                      +...           ...++.....++.+++.||+|||   +++|+||||||+||+           |||+++.......
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~  158 (294)
T PLN00009         82 YLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR  158 (294)
T ss_pred             cccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCcc
Confidence            2211           11344555678899999999995   678999999999988           8888875533221


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . .....+++.|+|||++
T Consensus       159 ~-~~~~~~~~~y~~PE~~  175 (294)
T PLN00009        159 T-FTHEVVTLWYRAPEIL  175 (294)
T ss_pred             c-cccCceeecccCHHHH
Confidence            1 1223578999999963

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=8.1e-16  Score=166.69  Aligned_cols=126  Identities=28%  Similarity=0.348  Sum_probs=101.5

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|+..+.||+|+||.||+|+.. +++.||+|.+.....   ...+.+.+|++++++++|+|++++++.+......++...
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            5788899999999999999865 589999999865432   245678999999999999999999999887765544332


Q ss_pred             ccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          752 HST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       752 ~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      +..            ...+.+.....++.++++|++|||   +.+|+||||||+||+          |||++...
T Consensus        82 ~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~  153 (316)
T cd05574          82 YCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLKPENILLHESGHIMLSDFDLSKQS  153 (316)
T ss_pred             ecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChHHeEEcCCCCEEEeecchhhcc
Confidence            211            134566777789999999999995   678999999999998          89987654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.65  E-value=7.5e-16  Score=160.92  Aligned_cols=144  Identities=32%  Similarity=0.471  Sum_probs=108.5

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc------
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS------  753 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~------  753 (827)
                      ++||+|+||.||+|...+++.||+|++..... ...++|.+|++++++++|+|++++++++......++...+.      
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            46899999999999976699999999875433 35568999999999999999999999988776554433222      


Q ss_pred             -----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc-cccee
Q 047196          754 -----TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ-TETLV  817 (827)
Q Consensus       754 -----~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~-~~~~g  817 (827)
                           ....+.+.....++.+++++++|||   +.+|+||||||+||+          |||+++.......... ....+
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~  157 (251)
T cd05041          81 TFLRKKKNRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQI  157 (251)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcc
Confidence                 1223566677889999999999995   678999999999998          8999876542221111 11124


Q ss_pred             cccccccccC
Q 047196          818 TIGYMAPGLL  827 (827)
Q Consensus       818 t~~Y~APE~l  827 (827)
                      +..|+|||++
T Consensus       158 ~~~y~~PE~~  167 (251)
T cd05041         158 PIKWTAPEAL  167 (251)
T ss_pred             eeccCChHhh
Confidence            6679999963

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.65  E-value=1e-15  Score=161.40  Aligned_cols=148  Identities=28%  Similarity=0.407  Sum_probs=111.1

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---------HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---------MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---------~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      |.....||+|+||.||+|... +++.||+|++.....         ...+.+.+|++++++++|||++++++++.+.+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            556788999999999999864 688999998854321         1235788999999999999999999998877655


Q ss_pred             eeeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          747 ALDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       747 ~l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+...+...          ..+++.....++.+++.|++|||   +.+++||||||+||+          |||+++....
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~  158 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKLEA  158 (267)
T ss_pred             EEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHH---hcCcccccCCHHHEEEcCCCCEEecccCCCccccc
Confidence            443333221          23556667789999999999996   568999999999998          9999887653


Q ss_pred             CCcc-----ccccceecccccccccC
Q 047196          807 DRSM-----IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~-----~~~~~~gt~~Y~APE~l  827 (827)
                      ....     ......|+..|+|||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~y~~pe~~  184 (267)
T cd06628         159 NSLSTKTNGARPSLQGSVFWMAPEVV  184 (267)
T ss_pred             ccccCCccccccccCCCcCccChhHh
Confidence            2111     01122478899999963

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.65  E-value=7e-16  Score=161.86  Aligned_cols=144  Identities=34%  Similarity=0.544  Sum_probs=111.0

Q ss_pred             ceEecCCceEEEEEEecC----CcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc--
Q 047196          681 NLIGVGSFGSVYKGRLHD----GIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS--  753 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~--  753 (827)
                      +.||+|+||.||+|+...    +..||||++...... ..+.+.+|++++++++|+|++++++++......++...+.  
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            469999999999998653    788999998765332 3678999999999999999999999988755444322211  


Q ss_pred             ---------C--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          754 ---------T--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       754 ---------~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                               .        ...+++.+...++.++++|++|||   +.+|+||||||+||+          |||.++....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCcccCccCcceEEECCCCcEEEccccccccccc
Confidence                     1        245678888999999999999995   688999999999998          8999887654


Q ss_pred             CCcc-ccccceecccccccccC
Q 047196          807 DRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                      .... ......++..|+|||++
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~  179 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAPESL  179 (262)
T ss_pred             ccccccccCCCcCccccCHHHh
Confidence            3211 11223478899999963

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.65  E-value=3.8e-16  Score=167.63  Aligned_cols=147  Identities=27%  Similarity=0.291  Sum_probs=112.9

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC-
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      |+....||+|+||.||+|+.. +++.||||++........+.+.+|+.+++.++|||++++++++..++..++...+.. 
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            333457999999999999864 689999999865444445678899999999999999999999877665554333222 


Q ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          755 --------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       755 --------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                              ...+++.....++.+++.|++|||   +.+|+||||||+||+          |||+++........ .....
T Consensus       103 ~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~-~~~~~  178 (297)
T cd06659         103 GALTDIVSQTRLNEEQIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK-RKSLV  178 (297)
T ss_pred             CCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHeEEccCCcEEEeechhHhhccccccc-cccee
Confidence                    124567778889999999999995   678999999999997          99998765433221 12345


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      |+.+|+|||++
T Consensus       179 ~~~~y~aPE~~  189 (297)
T cd06659         179 GTPYWMAPEVI  189 (297)
T ss_pred             cCccccCHHHH
Confidence            89999999973

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.64  E-value=1.4e-15  Score=159.76  Aligned_cols=149  Identities=29%  Similarity=0.361  Sum_probs=116.1

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      ++|+..+.+|+|+||.||+|... +++.+|+|++........+.+.+|++++++++|||++++++++......++...+.
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCC
Confidence            56888899999999999999864 57899999987655555678999999999999999999999887766544432221


Q ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          754 T-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 ~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .           ...++..+...++.+++.|++|||   +.+|+||||||+||+          |||++......... .
T Consensus        83 ~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~-~  158 (262)
T cd06613          83 GGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAK-R  158 (262)
T ss_pred             CCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCceecCCChhhEEECCCCCEEECccccchhhhhhhhc-c
Confidence            1           134666677789999999999995   578999999999988          99988765432211 1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++..|+|||++
T Consensus       159 ~~~~~~~~y~~Pe~~  173 (262)
T cd06613         159 KSFIGTPYWMAPEVA  173 (262)
T ss_pred             ccccCCccccCchhh
Confidence            223478899999974

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.64  E-value=1.3e-15  Score=160.38  Aligned_cols=149  Identities=26%  Similarity=0.379  Sum_probs=114.9

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|...+.||+|+||.||+|... +++.||+|++.....  ...+.+.+|++++++++|+|++++++.+...+..++...+
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            3667789999999999999864 689999999875433  3567899999999999999999999998776655443332


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+.+.....++.++++|++|||   +.+|+||||||+||+          |||++...........
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~  157 (264)
T cd06626          81 CSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMG  157 (264)
T ss_pred             CCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCccc
Confidence            21          123566777889999999999995   677999999999997          9999877654332211


Q ss_pred             c---cceecccccccccC
Q 047196          813 T---ETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~---~~~gt~~Y~APE~l  827 (827)
                      .   ...++..|+|||++
T Consensus       158 ~~~~~~~~~~~~~~PE~~  175 (264)
T cd06626         158 EEVQSLAGTPAYMAPEVI  175 (264)
T ss_pred             ccccCCcCCcCccChhhc
Confidence            1   13478899999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.64  E-value=5.1e-16  Score=164.86  Aligned_cols=148  Identities=28%  Similarity=0.321  Sum_probs=114.1

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|++++++++|+|++++++++...+..++...+.
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence            3566678999999999999864 58899999986443 334567999999999999999999999988776555433332


Q ss_pred             C---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 T---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      .         ...+.+.....++.++++|+.|||   +++|+|+||||+||+          |||+++.+...... ...
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-~~~  160 (277)
T cd06642          85 GGGSALDLLKPGPLEETYIATILREILKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK-RNT  160 (277)
T ss_pred             CCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCChheEEEeCCCCEEEccccccccccCcchh-hhc
Confidence            2         134567777889999999999995   678999999999987          99998766433211 122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..|+..|+|||++
T Consensus       161 ~~~~~~y~aPE~~  173 (277)
T cd06642         161 FVGTPFWMAPEVI  173 (277)
T ss_pred             ccCcccccCHHHh
Confidence            3478999999964

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.64  E-value=9.7e-16  Score=160.44  Aligned_cols=147  Identities=31%  Similarity=0.364  Sum_probs=115.9

Q ss_pred             hcccccceEecCCceEEEEEEecC-CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      ++|+..+.||+|+||.||+|+..+ +..||+|.+.....  .+++.+|++++++++|+|++++++++......++...+.
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~   80 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYC   80 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecC
Confidence            568888999999999999998764 78999999865432  678999999999999999999999988776554433222


Q ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          754 T-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 ~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .           ...+++.....++.++++|+.|||   +.+|+||||+|+||+          |||++......... .
T Consensus        81 ~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~-~  156 (256)
T cd06612          81 GAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAK-R  156 (256)
T ss_pred             CCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEECCCCcEEEcccccchhcccCccc-c
Confidence            1           234677788899999999999996   567999999999997          99998876543211 1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++..|+|||++
T Consensus       157 ~~~~~~~~y~~PE~~  171 (256)
T cd06612         157 NTVIGTPFWMAPEVI  171 (256)
T ss_pred             ccccCCccccCHHHH
Confidence            223478999999963

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.64  E-value=9.1e-16  Score=160.72  Aligned_cols=146  Identities=31%  Similarity=0.556  Sum_probs=110.5

Q ss_pred             cccceEecCCceEEEEEEecC-----CcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--e
Q 047196          678 SKENLIGVGSFGSVYKGRLHD-----GIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      ...+.||+|+||.||+|+..+     +..||+|++...... ..+.+.+|++++++++|+|++++++++...+..++  +
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            446789999999999998653     388999998655432 56789999999999999999999999887654433  2


Q ss_pred             eecc---------CCCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHS---------TNCS-LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~---------~~~~-l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      +...         .... +.+.+...++.+++.|++||   |+.+|+||||||+||+          |||+++.......
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~l---h~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  158 (258)
T smart00219       82 YMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYL---ESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY  158 (258)
T ss_pred             ccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHH---hcCCeeecccccceEEEccCCeEEEcccCCceecccccc
Confidence            2211         1111 67778889999999999999   4678999999999998          8999877654322


Q ss_pred             cccccceeccccccccc
Q 047196          810 MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~  826 (827)
                      .......+++.|+|||+
T Consensus       159 ~~~~~~~~~~~y~~Pe~  175 (258)
T smart00219      159 YKKKGGKLPIRWMAPES  175 (258)
T ss_pred             cccccCCCcccccChHH
Confidence            21111226789999996

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.64  E-value=1.1e-15  Score=163.84  Aligned_cols=149  Identities=28%  Similarity=0.337  Sum_probs=115.8

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|...+.||+|+||.||+|.. .++..||+|++........+.+.+|+.++++++|||++++.+++...+..++...+.
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            5688889999999999999975 468899999986544445577899999999999999999999987776555533322


Q ss_pred             CC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 TN---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      ..         ..+.+.+...++.++++|+.|||   +.+++||||||+||+          |||++......... ...
T Consensus        99 ~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~-~~~  174 (293)
T cd06647          99 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RST  174 (293)
T ss_pred             CCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCCCEEEccCcceecccccccc-ccc
Confidence            21         23566777889999999999995   678999999999987          89988765433221 122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..|++.|+|||++
T Consensus       175 ~~~~~~y~~PE~~  187 (293)
T cd06647         175 MVGTPYWMAPEVV  187 (293)
T ss_pred             ccCChhhcCchhh
Confidence            3488999999963

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.64  E-value=1.3e-15  Score=162.87  Aligned_cols=149  Identities=23%  Similarity=0.272  Sum_probs=110.5

Q ss_pred             cccccceEecCCceEEEEEEe----cCCcEEEEEEEcccch----HHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCce
Q 047196          676 KFSKENLIGVGSFGSVYKGRL----HDGIEVAIKVFHQNCA----MALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~----~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~  746 (827)
                      +|+..+.||+|+||.||+|+.    .+|+.||+|++.....    ...+++.+|+++++++ +|+||+++.+++..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            366778999999999999975    3689999999865321    2346788999999999 589999998887766554


Q ss_pred             eeeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          747 ALDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       747 ~l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      ++...+...          ..+.+.....++.++++|++|||   +.+++||||||+||+          |||+++....
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  157 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHE  157 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEECCCCCEEEeeCccceeccc
Confidence            443322221          23455566678889999999995   678999999999998          9999887644


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..........|+..|+|||++
T Consensus       158 ~~~~~~~~~~~~~~y~aPE~~  178 (290)
T cd05613         158 DEVERAYSFCGTIEYMAPDIV  178 (290)
T ss_pred             ccccccccccCCcccCChhhc
Confidence            322222234489999999974

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.64  E-value=8.7e-16  Score=163.73  Aligned_cols=147  Identities=27%  Similarity=0.359  Sum_probs=112.8

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Cceeeeee
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKALDCL  751 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~~l~~l  751 (827)
                      |+..+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|+|++++++++...  ...++...
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            456678999999999999865 58899999997652  33346788999999999999999999999876  44433222


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.          ....+.+.....++.++++|++|||   +.+++|+||||+||+          |||++..........
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH---~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~  157 (287)
T cd07840          81 YMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSAD  157 (287)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCccc
Confidence            11          1135677788899999999999996   568999999999998          999988765433211


Q ss_pred             cccceeccccccccc
Q 047196          812 QTETLVTIGYMAPGL  826 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~  826 (827)
                      .+...++..|+|||+
T Consensus       158 ~~~~~~~~~y~~PE~  172 (287)
T cd07840         158 YTNRVITLWYRPPEL  172 (287)
T ss_pred             ccccccccccCCcee
Confidence            223346889999995

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.64  E-value=1.8e-15  Score=159.08  Aligned_cols=151  Identities=26%  Similarity=0.357  Sum_probs=114.2

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--cee--e
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKA--L  748 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~--l  748 (827)
                      +|+..+.+|.|+||.||++.. .+|+.||+|++...  .....+++.+|++++++++|+|++++++++....  ..+  +
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            366778999999999999985 46889999998643  2344567899999999999999999998875432  122  2


Q ss_pred             eeecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcC--CCCeEEccCCCccee----------eecccccc
Q 047196          749 DCLHS------------TNCSLNIFDKLNIMIDVASALEYLHFSH--STPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       749 ~~l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h--~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      ++...            ....+++.....++.++++|++|||..+  +.+|+||||||+||+          |||+++..
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence            22211            1235667778889999999999997554  899999999999998          89988876


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...... .....+++.|+|||++
T Consensus       161 ~~~~~~-~~~~~~~~~~~~pE~~  182 (265)
T cd08217         161 GHDSSF-AKTYVGTPYYMSPEQL  182 (265)
T ss_pred             cCCccc-ccccccCCCccChhhh
Confidence            543321 1223589999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.64  E-value=9.7e-16  Score=165.52  Aligned_cols=150  Identities=29%  Similarity=0.379  Sum_probs=112.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--cee-
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKA-  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~-  747 (827)
                      .++|+..+.||+|+||.||+|... +|+.||+|++.....  .....+.+|++++++++|+|++++.+++.+..  ..+ 
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            467888999999999999999864 689999999864321  12235678999999999999999999886543  122 


Q ss_pred             -eeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 -LDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 -l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +++...        ....+.+.+...++.++++|++|||   +.+|+||||||+||+          |||+++......
T Consensus        86 v~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~  162 (309)
T cd07845          86 VMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPA  162 (309)
T ss_pred             EEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccceeeecCCcc
Confidence             222211        1234677788889999999999995   567999999999998          999988765332


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .. .+...+++.|+|||++
T Consensus       163 ~~-~~~~~~~~~y~aPE~~  180 (309)
T cd07845         163 KP-MTPKVVTLWYRAPELL  180 (309)
T ss_pred             CC-CCcccccccccChhhh
Confidence            21 1223468899999963

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.64  E-value=1.6e-15  Score=160.48  Aligned_cols=142  Identities=29%  Similarity=0.479  Sum_probs=103.8

Q ss_pred             ceEecCCceEEEEEEec-CCc--EEEEEEEccc-chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVGSFGSVYKGRLH-DGI--EVAIKVFHQN-CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ++||+|+||.||+|+.. +|.  .+|+|.+... .....+.+.+|+++++++ +|||++++++++......++...+.. 
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            46899999999999875 343  4788888643 234456789999999999 79999999999987665444222211 


Q ss_pred             -------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eec
Q 047196          755 -------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFG  799 (827)
Q Consensus       755 -------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFG  799 (827)
                                               ...+.+.+...++.+++.|++|||   +++|+||||||+||+          |||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nili~~~~~~kl~dfg  157 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFG  157 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccccceEEEcCCCeEEECCCC
Confidence                                     113567778899999999999996   678999999999998          999


Q ss_pred             ccccccCCCccccccceecccccccccC
Q 047196          800 IGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       800 la~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +++......  .......+..|+|||++
T Consensus       158 l~~~~~~~~--~~~~~~~~~~y~apE~~  183 (270)
T cd05047         158 LSRGQEVYV--KKTMGRLPVRWMAIESL  183 (270)
T ss_pred             Cccccchhh--hccCCCCccccCChHHH
Confidence            876322111  11111246789999963

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.64  E-value=2.6e-15  Score=159.45  Aligned_cols=148  Identities=28%  Similarity=0.335  Sum_probs=114.5

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      -|+..+.||+|+||.||+|.. .+++.||||+..... ....+.+.+|++++++++|+|++++++++..++..++...+.
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            366778899999999999986 468899999986432 334567899999999999999999999998877555433222


Q ss_pred             C---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 T---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      .         ...+++.....++.+++.++.||   |+.+|+|+||||+||+          |||+++.+..... ....
T Consensus        85 ~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~l---h~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~-~~~~  160 (277)
T cd06641          85 GGGSALDLLEPGPLDETQIATILREILKGLDYL---HSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI-KRNT  160 (277)
T ss_pred             CCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHH---ccCCeecCCCCHHhEEECCCCCEEEeecccceecccchh-hhcc
Confidence            1         23456777788999999999999   5689999999999988          9999876543221 1122


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..++.+|+|||++
T Consensus       161 ~~~~~~y~~PE~~  173 (277)
T cd06641         161 FVGTPFWMAPEVI  173 (277)
T ss_pred             ccCCccccChhhh
Confidence            3478899999963

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.63  E-value=1.2e-15  Score=159.96  Aligned_cols=143  Identities=28%  Similarity=0.450  Sum_probs=108.0

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-ceee--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FKAL--DCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~~l--~~l  751 (827)
                      .+|...+.||+|+||.||+|..+ |..||+|.+....  ..+.|.+|+.++++++|+|++++++++...+ ..++  ++.
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~   82 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   82 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECC
Confidence            46777899999999999999765 7789999986543  2457899999999999999999999865433 2222  222


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ..          ....+.+.....++.+++.|++|||   +.+|+||||||+||+          |||+++......   
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~---  156 (256)
T cd05082          83 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ---  156 (256)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccccchheEEEcCCCcEEecCCccceeccccC---
Confidence            21          1113567778899999999999995   678999999999998          999887543322   


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                       ....++..|+|||++
T Consensus       157 -~~~~~~~~y~aPE~~  171 (256)
T cd05082         157 -DTGKLPVKWTAPEAL  171 (256)
T ss_pred             -CCCccceeecCHHHH
Confidence             122356789999963

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.63  E-value=2.2e-15  Score=162.43  Aligned_cols=149  Identities=22%  Similarity=0.323  Sum_probs=111.6

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|+..+.||+|+||.||+++.. +++.||+|.+....   ....+.+.+|+++++.++|+|++++++.+..++..++...
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence            5777899999999999999865 57899999986543   2234578899999999999999999999887775544333


Q ss_pred             ccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC---
Q 047196          752 HSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR---  808 (827)
Q Consensus       752 ~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~---  808 (827)
                      +...          ..+.+.....++.++++|++|+|   +.+|+||||||+||+          |||+++......   
T Consensus        82 ~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~  158 (305)
T cd05609          82 YVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLH---NYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTN  158 (305)
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHEEECCCCCEEEeeCCCccccCcCcccc
Confidence            3221          33566667788999999999996   578999999999997          999887421100   


Q ss_pred             -----------ccccccceecccccccccC
Q 047196          809 -----------SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 -----------~~~~~~~~gt~~Y~APE~l  827 (827)
                                 ........++.+|+|||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  188 (305)
T cd05609         159 LYEGHIEKDTREFLDKQVCGTPEYIAPEVI  188 (305)
T ss_pred             ccccccccchhhccccCCccCccccCchhc
Confidence                       0001112478899999963

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.63  E-value=1.4e-15  Score=159.43  Aligned_cols=144  Identities=28%  Similarity=0.445  Sum_probs=106.0

Q ss_pred             ceEecCCceEEEEEEec--C--CcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee-eeecc-
Q 047196          681 NLIGVGSFGSVYKGRLH--D--GIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-DCLHS-  753 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~--~--g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l-~~l~~-  753 (827)
                      ++||+|+||.||+|++.  +  +..||+|.+..... ...+++.+|++++++++|+|+|++++++......++ ++... 
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~   80 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLG   80 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCC
Confidence            46999999999999753  2  36899999875543 345679999999999999999999998865443222 22211 


Q ss_pred             -------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc--c
Q 047196          754 -------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT--E  814 (827)
Q Consensus       754 -------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~--~  814 (827)
                             ....+.+..+..++.++++|++|||   ..+|+||||||+||+          |||+++...........  .
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~  157 (257)
T cd05060          81 PLLKYLKKRREIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTA  157 (257)
T ss_pred             cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccC
Confidence                   1124677788999999999999995   567999999999988          99998876443322111  1


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..++..|+|||++
T Consensus       158 ~~~~~~y~aPE~~  170 (257)
T cd05060         158 GRWPLKWYAPECI  170 (257)
T ss_pred             ccccccccCHHHh
Confidence            1235689999963

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.63  E-value=1e-15  Score=165.26  Aligned_cols=150  Identities=25%  Similarity=0.411  Sum_probs=111.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----  745 (827)
                      .++|+..+.||+|+||.||+|+.. +++.||||++....  ......+.+|++++++++|||+++.+++|.....     
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            356888999999999999999864 68999999986432  2223456789999999999999999998865432     


Q ss_pred             -----eeeeeec--------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          746 -----KALDCLH--------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       746 -----~~l~~l~--------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                           ..+++..        .....+.+.+...++.+++.|++|||   +.+|+||||||+||+          |||++.
T Consensus        91 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  167 (310)
T cd07865          91 KGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             CceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCcEEECcCCCcc
Confidence                 1222221        11224677778899999999999996   568999999999997          999987


Q ss_pred             cccCCCcc---ccccceeccccccccc
Q 047196          803 LLTGDRSM---IQTETLVTIGYMAPGL  826 (827)
Q Consensus       803 ~~~~~~~~---~~~~~~gt~~Y~APE~  826 (827)
                      ........   ......++..|+|||+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~y~aPE~  194 (310)
T cd07865         168 AFSLSKNSKPNRYTNRVVTLWYRPPEL  194 (310)
T ss_pred             cccCCcccCCCCccCcccCccccCcHH
Confidence            66432211   1122347889999996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.63  E-value=2.2e-15  Score=157.75  Aligned_cols=147  Identities=26%  Similarity=0.377  Sum_probs=112.7

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|.. .+++.||||++...  .....+.+.+|++++++++|+|+++.++.+..++..++...+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            467788999999999999986 46889999998643  233456899999999999999999999988766655443322


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~  809 (827)
                      ..            ...+.+.....++.+++++++|||   +.+|+||||||+||+           |||+++.......
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~  157 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK  157 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc
Confidence            21            123567777889999999999995   678999999999988           8888876543321


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                        .....|+..|+|||++
T Consensus       158 --~~~~~~~~~y~aPE~~  173 (256)
T cd08220         158 --AYTVVGTPCYISPELC  173 (256)
T ss_pred             --ccccccCCcccCchhc
Confidence              1223478999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.63  E-value=2.1e-15  Score=160.12  Aligned_cols=149  Identities=28%  Similarity=0.351  Sum_probs=115.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +.|+..+.||+|+||.||+|... ++..||||++.... ....+.+.+|++++++++|+|++++++++.++...++...+
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            34667788999999999999865 58899999987543 34567899999999999999999999999887766554433


Q ss_pred             cCC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 STN---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 ~~~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      ...         ..+.+.+...++.++++|++|+|   +.+++|+||+|+||+          |||+++....... ...
T Consensus        84 ~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~-~~~  159 (277)
T cd06640          84 LGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI-KRN  159 (277)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCChhhEEEcCCCCEEEcccccceeccCCcc-ccc
Confidence            322         23566667789999999999995   678999999999988          9999877643322 122


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||++
T Consensus       160 ~~~~~~~y~apE~~  173 (277)
T cd06640         160 TFVGTPFWMAPEVI  173 (277)
T ss_pred             cccCcccccCHhHh
Confidence            23478899999973

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.63  E-value=2.2e-16  Score=171.95  Aligned_cols=148  Identities=26%  Similarity=0.438  Sum_probs=112.0

Q ss_pred             ccccceEecCCceEEEEEEec--CC--cEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee---
Q 047196          677 FSKENLIGVGSFGSVYKGRLH--DG--IEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL---  748 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~--~g--~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l---  748 (827)
                      ....++||+|+||+|++|.|.  .|  ..||||.++.+... ....|.+|+.+|-+++|+|+|+++|...+....+.   
T Consensus       112 i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~EL  191 (1039)
T KOG0199|consen  112 IKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFEL  191 (1039)
T ss_pred             HHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhh
Confidence            344578999999999999875  34  45999999766433 57899999999999999999999999876433221   


Q ss_pred             -------eeecc-CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          749 -------DCLHS-TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       749 -------~~l~~-~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                             +.++. ....+-......++.|||.|+.||.   .++.||||+...|+|          |||+.|.+......
T Consensus       192 aplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~  268 (1039)
T KOG0199|consen  192 APLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDM  268 (1039)
T ss_pred             cccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhheecccceeeeecccceeccCCCCcc
Confidence                   22332 1223444556789999999999994   677999999999998          99999998765554


Q ss_pred             cc-ccce-ecccccccccC
Q 047196          811 IQ-TETL-VTIGYMAPGLL  827 (827)
Q Consensus       811 ~~-~~~~-gt~~Y~APE~l  827 (827)
                      +. .... ..+.|.|||-+
T Consensus       269 Yvm~p~rkvPfAWCaPEsL  287 (1039)
T KOG0199|consen  269 YVMAPQRKVPFAWCAPESL  287 (1039)
T ss_pred             eEecCCCcCcccccCHhHh
Confidence            31 1111 46789999954

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.63  E-value=2.5e-15  Score=157.52  Aligned_cols=148  Identities=30%  Similarity=0.444  Sum_probs=111.4

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-ceee--e
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FKAL--D  749 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~~l--~  749 (827)
                      +|+..+.||+|+||.||+++.. +++.||||++....  ....+.+.+|++++++++|+|++++.+.+...+ ..++  +
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            3677889999999999999864 57899999986432  334567899999999999999999998875443 2222  2


Q ss_pred             eecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      +...          ....+.+.+...++.+++.|++|+|   +.+|+||||||+||+          |||+++.......
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~  157 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD  157 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCchhEEEecCCcEEEecccceEEecccCC
Confidence            2211          1123667778899999999999995   678999999999987          9999887643322


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . .....+++.|+|||++
T Consensus       158 ~-~~~~~~~~~y~aPE~~  174 (257)
T cd08223         158 M-ASTLIGTPYYMSPELF  174 (257)
T ss_pred             c-cccccCCcCccChhHh
Confidence            1 1223478999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.63  E-value=2.6e-15  Score=160.20  Aligned_cols=148  Identities=24%  Similarity=0.263  Sum_probs=114.0

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      .|...+.||+|++|.||+|.. .+++.||+|++........+.+.+|+.++++++|+|++++++++...+..++...+..
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence            355567999999999999985 4688999999875554455678999999999999999999999877665554333322


Q ss_pred             C---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          755 N---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       755 ~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                      .         ..+++.....++.+++.|++|||   +.+|+||||||+||+          |||+++........ ....
T Consensus       100 ~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~-~~~~  175 (285)
T cd06648         100 GGALTDIVTHTRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPR-RKSL  175 (285)
T ss_pred             CCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcc-cccc
Confidence            1         24566677889999999999995   678999999999997          88887765433221 1223


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .|++.|+|||++
T Consensus       176 ~~~~~y~aPE~~  187 (285)
T cd06648         176 VGTPYWMAPEVI  187 (285)
T ss_pred             cCCccccCHHHh
Confidence            489999999963

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.63  E-value=1.5e-15  Score=161.72  Aligned_cols=158  Identities=26%  Similarity=0.343  Sum_probs=117.1

Q ss_pred             cchhHHHHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeec
Q 047196          665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSN  742 (827)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~  742 (827)
                      .+..++..+.+.|+..+.+|+|+||.||+|+. .+++.||+|++.... ....++..|+.+++++ +|+|++++++++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            35566666778899999999999999999986 468899999986543 2345688999999999 69999999999853


Q ss_pred             C------Ccee--eeeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------
Q 047196          743 E------DFKA--LDCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------  796 (827)
Q Consensus       743 ~------~~~~--l~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------  796 (827)
                      .      +..+  +++...          ....+.+.....++.+++.|++|||   +.+|+|||+||+||+        
T Consensus        85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dl~~~nili~~~~~~~  161 (282)
T cd06636          85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVK  161 (282)
T ss_pred             ccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEE
Confidence            2      2222  233221          1123455566788999999999995   578999999999988        


Q ss_pred             --eecccccccCCCccccccceecccccccccC
Q 047196          797 --DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                        |||+++........ .....|++.|+|||++
T Consensus       162 l~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~l  193 (282)
T cd06636         162 LVDFGVSAQLDRTVGR-RNTFIGTPYWMAPEVI  193 (282)
T ss_pred             EeeCcchhhhhccccC-CCcccccccccCHhhc
Confidence              99998765322211 1224589999999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.63  E-value=1.7e-15  Score=162.38  Aligned_cols=149  Identities=26%  Similarity=0.352  Sum_probs=110.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCc-----
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIR-HRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~-----  745 (827)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++.....  .....+.+|++++++++ |+|++++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            35788899999999999999864 689999999764321  22356888999999996 5999999998865443     


Q ss_pred             --eeeeeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecc
Q 047196          746 --KALDCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGI  800 (827)
Q Consensus       746 --~~l~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGl  800 (827)
                        ..++++...            ...+.+.....++.++++||+|||   +++|+||||||+||+           |||+
T Consensus        81 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~~~nil~~~~~~~~kl~dfg~  157 (295)
T cd07837          81 LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHRDLKPQNLLVDKQKGLLKIADLGL  157 (295)
T ss_pred             EEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEecCCCeEEEeeccc
Confidence              223332210            123567788889999999999995   678999999999998           8888


Q ss_pred             cccccCCCccccccceecccccccccC
Q 047196          801 GRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ++.+...... .....+++.|+|||++
T Consensus       158 ~~~~~~~~~~-~~~~~~~~~~~aPE~~  183 (295)
T cd07837         158 GRAFSIPVKS-YTHEIVTLWYRAPEVL  183 (295)
T ss_pred             ceecCCCccc-cCCcccccCCCChHHh
Confidence            8765332211 1223478899999963

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=1.9e-15  Score=160.44  Aligned_cols=148  Identities=26%  Similarity=0.395  Sum_probs=114.5

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcC---CCCceEEEeeeecCCceeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIR---HRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~---H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .|+..+.||+|+||.||+|.. .+++.||||++.... ....+++.+|++++++++   |+|++++++++......++..
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            366678899999999999986 568999999986542 334567889999999997   999999999988766544433


Q ss_pred             eccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          751 LHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       751 l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .+..         ...+.+.....++.++++|+.|||   +.+|+||||||+||+          |||++......... 
T Consensus        82 e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-  157 (277)
T cd06917          82 EYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSK-  157 (277)
T ss_pred             ecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccc-
Confidence            2221         234667778889999999999995   678999999999998          99998876543321 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....|+..|+|||++
T Consensus       158 ~~~~~~~~~y~aPE~~  173 (277)
T cd06917         158 RSTFVGTPYWMAPEVI  173 (277)
T ss_pred             cccccCCcceeCHHHh
Confidence            2223589999999963

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.63  E-value=1.5e-15  Score=161.75  Aligned_cols=149  Identities=27%  Similarity=0.421  Sum_probs=110.8

Q ss_pred             hcccccceEecCCceEEEEEEec-----CCcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeec--CCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-----DGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSN--EDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~--~~~~  746 (827)
                      +.|...+.||+|+||.||+|++.     +++.||||++...... ..+.|.+|++++++++|+|++++++++..  ....
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            34666788999999999999853     3688999998755432 46789999999999999999999998876  2222


Q ss_pred             ee--eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          747 AL--DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       747 ~l--~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      .+  ++...         ....+++.....++.++++||+|||   +.+|+||||||+||+          |||++....
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence            22  32221         1123677788899999999999996   578999999999998          999988765


Q ss_pred             CCCccc--cccceeccccccccc
Q 047196          806 GDRSMI--QTETLVTIGYMAPGL  826 (827)
Q Consensus       806 ~~~~~~--~~~~~gt~~Y~APE~  826 (827)
                      ......  .....++..|+|||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~Pe~  183 (284)
T cd05038         161 EDKDYYYVKEPGESPIFWYAPEC  183 (284)
T ss_pred             cCCcceeccCCCCCcccccCcHH
Confidence            332211  111224667999996

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.63  E-value=2.8e-15  Score=157.95  Aligned_cols=149  Identities=27%  Similarity=0.337  Sum_probs=115.4

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..+.||.|+||.||+|... ++..||+|++.... ....+.+.+|+++++.++|+|+++.++.+...+..++...+.
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~   81 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYL   81 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEecc
Confidence            5788899999999999999854 68899999986532 335678999999999999999999999887776554433222


Q ss_pred             CC-------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          754 TN-------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       754 ~~-------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..             ..+++.....++.+++.|++|||   +.+|+||||||+||+          |||++..+......
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~  158 (267)
T cd06610          82 SGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDR  158 (267)
T ss_pred             CCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccc
Confidence            11             23566677789999999999995   678999999999998          99988776543322


Q ss_pred             ---ccccceecccccccccC
Q 047196          811 ---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ---~~~~~~gt~~Y~APE~l  827 (827)
                         ......|+..|+|||++
T Consensus       159 ~~~~~~~~~~~~~y~~Pe~~  178 (267)
T cd06610         159 TRKVRKTFVGTPCWMAPEVM  178 (267)
T ss_pred             cccccccccCChhhcChHHH
Confidence               11223489999999973

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.63  E-value=2.1e-15  Score=161.84  Aligned_cols=149  Identities=24%  Similarity=0.293  Sum_probs=112.9

Q ss_pred             hcccccceEecCCceEEEEEEecC-CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNC-AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|+||.||+|...+ |+.||||++.... .....++.+|++++.+.. |+|+++++++|......++...
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            567788999999999999999764 8999999986532 234456777888777775 9999999999987765544222


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +..          ...+++..+..++.++++|++|||.  .++|+||||||+||+          |||+++.+...... 
T Consensus        95 ~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~-  171 (296)
T cd06618          95 LMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKE--KHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAK-  171 (296)
T ss_pred             ccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh--hCCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcc-
Confidence            221          2346777788999999999999973  358999999999988          99998766433221 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                       ....++..|+|||++
T Consensus       172 -~~~~~~~~y~aPE~~  186 (296)
T cd06618         172 -TRSAGCAAYMAPERI  186 (296)
T ss_pred             -cCCCCCccccCHhhc
Confidence             223478899999974

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.63  E-value=1.3e-15  Score=163.21  Aligned_cols=149  Identities=24%  Similarity=0.263  Sum_probs=99.3

Q ss_pred             hcccccceEecCCceEEEEEEecC----CcEEEEEEEcccchHH-----------HHHHHHHHHHHHhcCCCCceEEEee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD----GIEVAIKVFHQNCAMA-----------LKSFEAECEVMKNIRHRNHVKRISS  739 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~-----------~~~~~~Ei~~l~~l~H~niv~~~~~  739 (827)
                      .+|...++||+|+||.||+|+..+    +..+|+|+........           ......+...+..++|+++++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            468888999999999999998653    4566777543221110           0112334455667789999999987


Q ss_pred             eecCCc------eeeeeeccC-------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------
Q 047196          740 CSNEDF------KALDCLHST-------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------  796 (827)
Q Consensus       740 ~~~~~~------~~l~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------  796 (827)
                      +.....      ..++.+...       .....+.....|+.++++|++|||   +++|+||||||+|||          
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiHrDiKp~Nill~~~~~~~l~  168 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIH---EHGISHGDIKPENIMVDGNNRGYII  168 (294)
T ss_pred             eeEecCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCcEEEE
Confidence            655431      111211110       112345556789999999999995   678999999999998          


Q ss_pred             eecccccccCCCcc------ccccceeccccccccc
Q 047196          797 DFGIGRLLTGDRSM------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       797 DFGla~~~~~~~~~------~~~~~~gt~~Y~APE~  826 (827)
                      |||+|+.+......      ......||+.|+|||+
T Consensus       169 DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~  204 (294)
T PHA02882        169 DYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDA  204 (294)
T ss_pred             EcCCceeeccCCcccccccccccccCCCccccCHHH
Confidence            99999876432211      1112348999999996

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.62  E-value=1.5e-16  Score=157.57  Aligned_cols=145  Identities=26%  Similarity=0.370  Sum_probs=107.1

Q ss_pred             Hhhccccc-ceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC---c-
Q 047196          673 ATEKFSKE-NLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNED---F-  745 (827)
Q Consensus       673 ~~~~~~~~-~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~---~-  745 (827)
                      .|++|... ++||-|--|+|..+.. .+|+.+|.|++...     +..++|+++.-+. .|||||..++.|.+.-   . 
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkc  133 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYENSYQGRKC  133 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhhhccCcee
Confidence            34555443 6899999999999975 47899999998543     3457888876665 5999999999886521   1 


Q ss_pred             --eeeeeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecc
Q 047196          746 --KALDCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGI  800 (827)
Q Consensus       746 --~~l~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGl  800 (827)
                        .+|+++..          +...++..+.-+|+.+|+.|+.||   |+.+|.||||||+|+|             |||+
T Consensus       134 LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~l---H~~nIAHRDlKpENLLyt~t~~na~lKLtDfGF  210 (400)
T KOG0604|consen  134 LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYL---HSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGF  210 (400)
T ss_pred             eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHH---HhcchhhccCChhheeeecCCCCcceEeccccc
Confidence              12333332          123456667788999999999999   5778999999999998             9999


Q ss_pred             cccccCCCccccccceecccccccccC
Q 047196          801 GRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ||.-.....  ..+.+-|++|+|||++
T Consensus       211 AK~t~~~~~--L~TPc~TPyYvaPevl  235 (400)
T KOG0604|consen  211 AKETQEPGD--LMTPCFTPYYVAPEVL  235 (400)
T ss_pred             ccccCCCcc--ccCCcccccccCHHHh
Confidence            987543222  2334579999999985

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.62  E-value=3.9e-15  Score=161.11  Aligned_cols=143  Identities=25%  Similarity=0.316  Sum_probs=111.3

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      |...+.||+|+||+||+|+.. +|+.||+|++...   .....+.+.+|++++++++|+|++++.+++.+.+..++...+
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            555678999999999999864 6889999998643   233446788999999999999999999999887655543322


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ....+.+.+...++.+++.+++|||   +.+|+||||||+||+          |||++......     
T Consensus       103 ~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~-----  174 (313)
T cd06633         103 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA-----  174 (313)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChhhEEECCCCCEEEeecCCCcccCCC-----
Confidence            1          1234677788889999999999996   567999999999998          88887543211     


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....|+..|+|||++
T Consensus       175 ~~~~~~~~y~aPE~~  189 (313)
T cd06633         175 NSFVGTPYWMAPEVI  189 (313)
T ss_pred             CCccccccccChhhc
Confidence            223588999999974

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=2.3e-16  Score=163.26  Aligned_cols=153  Identities=27%  Similarity=0.396  Sum_probs=113.4

Q ss_pred             hhcccccceEecCCceEEEEEE-ecCCcEEEEEEEccc--ch-----HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQN--CA-----MALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~--~~-----~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      .++|-..+++|+|+|+.||||. +...+.||||+-..+  ..     ...+...+|.+|.+.++||.||++++++.-+..
T Consensus       462 n~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd  541 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD  541 (775)
T ss_pred             HHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc
Confidence            3567777899999999999997 455788999985322  11     124567789999999999999999999865443


Q ss_pred             e---eeeeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eeccc
Q 047196          746 K---ALDCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIG  801 (827)
Q Consensus       746 ~---~l~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla  801 (827)
                      .   ++++...-        ....+..+...|+.+|..||.||.+ -++||||-||||.|||             |||++
T Consensus       542 sFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNE-ikpPIIHYDLKPgNILLv~GtacGeIKITDFGLS  620 (775)
T KOG1151|consen  542 SFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNE-IKPPIIHYDLKPGNILLVNGTACGEIKITDFGLS  620 (775)
T ss_pred             cceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc-cCCCeeeeccCCccEEEecCcccceeEeeecchh
Confidence            2   23333221        1223445567899999999999975 5799999999999998             99999


Q ss_pred             ccccCCCcc-----cccc-ceecccccccccC
Q 047196          802 RLLTGDRSM-----IQTE-TLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~-----~~~~-~~gt~~Y~APE~l  827 (827)
                      |+..++...     ..++ ..||.+|.+||.+
T Consensus       621 KIMdddSy~~vdGmeLTSQgAGTYWYLPPEcF  652 (775)
T KOG1151|consen  621 KIMDDDSYNSVDGMELTSQGAGTYWYLPPECF  652 (775)
T ss_pred             hhccCCccCcccceeeecccCceeeecCccee
Confidence            998654332     1222 3489999999963

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.62  E-value=1.9e-15  Score=160.91  Aligned_cols=147  Identities=29%  Similarity=0.394  Sum_probs=112.8

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      |+..+.||+|++|.||+|... +|..||||++....  ....+.+.+|++++++++|+|++++++++.+++..++...+.
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            456688999999999999864 79999999986442  223356889999999999999999999998776555433221


Q ss_pred             C---------C--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          754 T---------N--CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 ~---------~--~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .         .  ..+++.....++.++++||+|||   +++++||||+|+||+          |||+++........ .
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~-~  156 (283)
T cd07835          81 DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRT-Y  156 (283)
T ss_pred             CcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccc-c
Confidence            1         1  24678888999999999999996   568999999999988          99998765322211 1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++..|+|||++
T Consensus       157 ~~~~~~~~~~aPE~~  171 (283)
T cd07835         157 THEVVTLWYRAPEIL  171 (283)
T ss_pred             CccccccCCCCCcee
Confidence            223468899999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=4.3e-15  Score=155.20  Aligned_cols=147  Identities=33%  Similarity=0.386  Sum_probs=114.9

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|++|.||+|+.. +++.||||.+.....  ...+.+.+|++++++++|+|++++++++......++...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            3667789999999999999865 688999999875533  4567899999999999999999999998776654443222


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+++.....++.+++.|+.|||   +.+|+||||||+||+          |||+++........ .
T Consensus        81 ~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-~  156 (254)
T cd06627          81 AENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD-D  156 (254)
T ss_pred             CCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEECCCCCEEEeccccceecCCCccc-c
Confidence            21          135677788899999999999995   678999999999988          89988876543321 1


Q ss_pred             ccceeccccccccc
Q 047196          813 TETLVTIGYMAPGL  826 (827)
Q Consensus       813 ~~~~gt~~Y~APE~  826 (827)
                      ....++..|+|||+
T Consensus       157 ~~~~~~~~y~~pe~  170 (254)
T cd06627         157 ASVVGTPYWMAPEV  170 (254)
T ss_pred             cccccchhhcCHhh
Confidence            22347899999996

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.62  E-value=4.7e-15  Score=155.97  Aligned_cols=148  Identities=25%  Similarity=0.330  Sum_probs=117.0

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..+.||+|++|.||+|+.. +++.||||++..... ...+.+.+|++.+++++|+|++++++++......++...+.
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            5777899999999999999875 589999999876543 45678999999999999999999999988776555433322


Q ss_pred             C----------CCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          754 T----------NCSLNIFDKLNIMIDVASALEYLHFSHS-TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 ~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~-~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ...++......++.++++|++|+|   + .+++||||||+||+          |||.++......... 
T Consensus        82 ~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~-  157 (264)
T cd06623          82 DGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLH---TKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC-  157 (264)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc-
Confidence            2          134566777899999999999994   6 88999999999998          899888765433221 


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++..|+|||++
T Consensus       158 ~~~~~~~~y~~pE~~  172 (264)
T cd06623         158 NTFVGTVTYMSPERI  172 (264)
T ss_pred             cceeecccccCHhhh
Confidence            123478999999963

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.62  E-value=3.2e-15  Score=156.64  Aligned_cols=148  Identities=25%  Similarity=0.367  Sum_probs=114.1

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+++. .+|+.||+|++...  .....+++.+|++++++++|+|++++.+++.+.+..++...+
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            467789999999999999985 46899999998643  233456789999999999999999999998777665543332


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+.+.+...++.+++.|++|||   +.+++|+||+|+||+          |||++.........
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~  157 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVEL  157 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhh
Confidence            21            123466677889999999999995   578999999999998          99998766433221


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....|++.|+|||++
T Consensus       158 -~~~~~~~~~~~~pe~~  173 (256)
T cd08218         158 -ARTCIGTPYYLSPEIC  173 (256)
T ss_pred             -hhhccCCccccCHHHh
Confidence             1223478999999973

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.61  E-value=3.6e-15  Score=157.79  Aligned_cols=150  Identities=25%  Similarity=0.359  Sum_probs=114.5

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCc-----
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~-----  745 (827)
                      ++++|+..+.||+|+||.||+|+.. +++.||+|++..... ..+++.+|+++++++ +|+|++++++++.....     
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            5678999999999999999999875 578999999875433 346789999999999 69999999999865442     


Q ss_pred             -e--eeeeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecc
Q 047196          746 -K--ALDCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI  800 (827)
Q Consensus       746 -~--~l~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGl  800 (827)
                       .  ++++....            ...+++.....++.++++|++||   |+.+|+||||+|+||+          |||+
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~l---H~~~i~H~~l~p~ni~~~~~~~~~l~d~~~  159 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYL---HENKVIHRDIKGQNILLTKNAEVKLVDFGV  159 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---hcCCcccCCCCHHHEEEccCCeEEECCCcc
Confidence             2  22322211            23456667778999999999999   4778999999999998          8998


Q ss_pred             cccccCCCccccccceecccccccccC
Q 047196          801 GRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +........ ......|+..|+|||++
T Consensus       160 ~~~~~~~~~-~~~~~~~~~~y~aPE~~  185 (275)
T cd06608         160 SAQLDSTLG-RRNTFIGTPYWMAPEVI  185 (275)
T ss_pred             ceecccchh-hhcCccccccccCHhHh
Confidence            876533222 12234589999999963

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.61  E-value=8.4e-16  Score=166.01  Aligned_cols=150  Identities=26%  Similarity=0.377  Sum_probs=111.7

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce----
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK----  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~----  746 (827)
                      .++|+..+.||+|+||.||+|+.. +++.||||++.....  .....+.+|++++++++|+|++++++.+......    
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            468899999999999999999864 689999999864322  1234578899999999999999998876543211    


Q ss_pred             ----ee--eeec--------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          747 ----AL--DCLH--------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       747 ----~l--~~l~--------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                          ++  ++..        .....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++
T Consensus        87 ~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  163 (311)
T cd07866          87 RGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIADFGLAR  163 (311)
T ss_pred             CceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECcCccch
Confidence                22  2111        11235677888899999999999995   678999999999997          999987


Q ss_pred             cccCCCcc----------ccccceeccccccccc
Q 047196          803 LLTGDRSM----------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       803 ~~~~~~~~----------~~~~~~gt~~Y~APE~  826 (827)
                      ........          ..+...+++.|+|||+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  197 (311)
T cd07866         164 PYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPEL  197 (311)
T ss_pred             hccCCCcccccCCcccccccccceeccCcCChHH
Confidence            65432211          0122347889999996

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.61  E-value=6e-17  Score=157.89  Aligned_cols=146  Identities=26%  Similarity=0.290  Sum_probs=102.7

Q ss_pred             cccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHh-cCCCCceEEEeeeecCCceee--eeec
Q 047196          678 SKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-AMALKSFEAECEVMKN-IRHRNHVKRISSCSNEDFKAL--DCLH  752 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~-l~H~niv~~~~~~~~~~~~~l--~~l~  752 (827)
                      +....||.|+||+|+|-.. +.|+..|||+++... ....+++..|.++..+ =+-||||+++|.+..+...++  +.+.
T Consensus        67 qdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd  146 (361)
T KOG1006|consen   67 QDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD  146 (361)
T ss_pred             HHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh
Confidence            3446799999999999975 479999999997643 4567789999875544 468999999999987764443  2111


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..            ...+...-.-.|..-+..||.||...+  .|||||+||+|||          |||+...+.+.  .
T Consensus       147 ~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~S--i  222 (361)
T KOG1006|consen  147 ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDS--I  222 (361)
T ss_pred             hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchHhHHHH--H
Confidence            00            011111111234555678999998654  4999999999999          99998766433  2


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      +.+.-+|-..|||||-|
T Consensus       223 AkT~daGCrpYmAPERi  239 (361)
T KOG1006|consen  223 AKTVDAGCRPYMAPERI  239 (361)
T ss_pred             HhhhccCCccccChhcc
Confidence            33445588899999964

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.61  E-value=1.4e-15  Score=166.10  Aligned_cols=151  Identities=28%  Similarity=0.409  Sum_probs=113.2

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      .++|+..+.||+|+||.||+|... +|+.||+|++....  ....+.+.+|++++++++|+|++++.+++....      
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            367888899999999999999864 68999999986532  233567788999999999999999888764322      


Q ss_pred             ceeeeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          745 FKALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       745 ~~~l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +..+++...       ....+++.....++.++++||+|||   +++|+||||||+||+          |||+++.....
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  160 (334)
T cd07855          84 YVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS  160 (334)
T ss_pred             EEEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEecccccceeeccc
Confidence            122222211       1234677788899999999999996   568999999999998          99998766432


Q ss_pred             Ccc---ccccceecccccccccC
Q 047196          808 RSM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~---~~~~~~gt~~Y~APE~l  827 (827)
                      ...   .....+|+..|+|||++
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~  183 (334)
T cd07855         161 PTEHKYFMTEYVATRWYRAPELL  183 (334)
T ss_pred             CcCCCcccccccccccccChHHh
Confidence            221   11223588999999963

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.61  E-value=1.7e-15  Score=156.89  Aligned_cols=119  Identities=24%  Similarity=0.319  Sum_probs=93.6

Q ss_pred             hcccccceEecCCceEEEEEEecC-CcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      +.|+..+.+|+|.-|+||.+++++ +..+|+|++.+...   ....+.+.|-+||+.++||.+..++..+..+.+..+..
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~m  156 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVM  156 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEE
Confidence            456777889999999999999864 68899999976542   23456788999999999999999999998888766543


Q ss_pred             eccCCC------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          751 LHSTNC------------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       751 l~~~~~------------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                      .+-.++            .+......-+|..|.-||+||   |..|||.|||||+|||
T Consensus       157 eyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYL---HmlGivYRDLKPENIL  211 (459)
T KOG0610|consen  157 EYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYL---HMLGIVYRDLKPENIL  211 (459)
T ss_pred             ecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHH---HhhceeeccCCcceeE
Confidence            332222            234444556778888899999   5789999999999998

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.61  E-value=6.7e-15  Score=153.30  Aligned_cols=147  Identities=31%  Similarity=0.440  Sum_probs=115.9

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      +|+..+.||+|++|.||++... +++.||+|++........+.+.+|++++++++|++++++++.+......++...+..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            3667789999999999999875 688999999976654456789999999999999999999999877655444322221


Q ss_pred             -----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          755 -----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       755 -----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                 ...+.+.+...++.++++|++|||   ..+++||||||+||+          |||.+........  ..
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~  155 (253)
T cd05122          81 GGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA--RN  155 (253)
T ss_pred             CCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCCHHHEEEccCCeEEEeecccccccccccc--cc
Confidence                       135677788889999999999995   578999999999987          8998876654321  12


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||++
T Consensus       156 ~~~~~~~~~~PE~~  169 (253)
T cd05122         156 TMVGTPYWMAPEVI  169 (253)
T ss_pred             ceecCCcccCHHHH
Confidence            23478999999963

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.61  E-value=2e-15  Score=158.20  Aligned_cols=147  Identities=22%  Similarity=0.351  Sum_probs=112.8

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+|... +|..||+|.+....  ....+.+.+|++++++++|+|++++++.+......++...+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4677889999999999999865 58899999986532  23345788999999999999999999998777655443322


Q ss_pred             cC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCc
Q 047196          753 ST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~  809 (827)
                      ..            ...+++.....++.++++|++|||   +.+|+|+||||+||+           |||.+........
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~  157 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSME  157 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcc
Confidence            21            123577788899999999999996   567999999999988           7888776543322


Q ss_pred             cccccceeccccccccc
Q 047196          810 MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~  826 (827)
                      . .....|++.|+|||+
T Consensus       158 ~-~~~~~~~~~~~ape~  173 (257)
T cd08225         158 L-AYTCVGTPYYLSPEI  173 (257)
T ss_pred             c-ccccCCCccccCHHH
Confidence            1 122348899999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.61  E-value=1.5e-15  Score=166.10  Aligned_cols=149  Identities=26%  Similarity=0.390  Sum_probs=112.1

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++...  ......++.+|++++++++|+|++++.+++....      
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            35688889999999999999985 46899999998643  2233456788999999999999999998775432      


Q ss_pred             -ceeeeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 -FKALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 -~~~l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                       +.++++...       ....+.......++.++++|+.|||   +++|+||||||+||+          |||+++....
T Consensus        84 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  160 (337)
T cd07858          84 VYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             EEEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcCccccccCC
Confidence             122222211       1234667778889999999999995   668999999999997          9999987643


Q ss_pred             CCccccccceeccccccccc
Q 047196          807 DRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ... ......++..|+|||+
T Consensus       161 ~~~-~~~~~~~~~~y~aPE~  179 (337)
T cd07858         161 KGD-FMTEYVVTRWYRAPEL  179 (337)
T ss_pred             Ccc-cccccccccCccChHH
Confidence            321 1123357889999996

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.61  E-value=2.6e-15  Score=157.20  Aligned_cols=143  Identities=27%  Similarity=0.517  Sum_probs=108.0

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-eeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-LDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-l~~l~~  753 (827)
                      ++|...+.||+|+||.||+|.. .++.||+|+.....  ..+.+.+|+.++++++|+|++++.+++......+ +++...
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~   82 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSK   82 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCC
Confidence            4578889999999999999975 57789999986543  3457899999999999999999999986654322 222211


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 ----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                ....+.+.....++.++++|++|||   +.+++||||||+||+          |||+++......    .
T Consensus        83 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~----~  155 (254)
T cd05083          83 GNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV----D  155 (254)
T ss_pred             CCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCcEEECCCccceeccccC----C
Confidence                      1123567777889999999999995   678999999999998          999887543211    1


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ....+..|+|||++
T Consensus       156 ~~~~~~~y~~pe~~  169 (254)
T cd05083         156 NSKLPVKWTAPEAL  169 (254)
T ss_pred             CCCCCceecCHHHh
Confidence            12246789999964

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.61  E-value=2.6e-15  Score=160.69  Aligned_cols=144  Identities=25%  Similarity=0.261  Sum_probs=111.9

Q ss_pred             cceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCC---
Q 047196          680 ENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTN---  755 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~---  755 (827)
                      ..+||+|+||.||+|.. .+|+.||||++..........+.+|+.++++++|+|+++.++++...+..++...+...   
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  104 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcH
Confidence            35799999999999986 46899999998665555566799999999999999999999998877665553333221   


Q ss_pred             ------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccceecc
Q 047196          756 ------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTI  819 (827)
Q Consensus       756 ------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt~  819 (827)
                            ..+.+.....++.+++.|++|||   +.+|+||||||+||+          |||++......... .....|++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~  180 (292)
T cd06657         105 TDIVTHTRMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR-RKSLVGTP  180 (292)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEcccccceeccccccc-ccccccCc
Confidence                  24566777889999999999996   568999999999988          99988765432211 12234889


Q ss_pred             cccccccC
Q 047196          820 GYMAPGLL  827 (827)
Q Consensus       820 ~Y~APE~l  827 (827)
                      +|+|||++
T Consensus       181 ~y~~pE~~  188 (292)
T cd06657         181 YWMAPELI  188 (292)
T ss_pred             cccCHHHh
Confidence            99999963

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.61  E-value=3.5e-15  Score=162.48  Aligned_cols=152  Identities=26%  Similarity=0.364  Sum_probs=112.9

Q ss_pred             HHHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-
Q 047196          669 DLFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNED-  744 (827)
Q Consensus       669 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-  744 (827)
                      ++...+++|+..+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|||+|++.+++.... 
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   83 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE   83 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC
Confidence            44556788999999999999999999854 78999999885422  223467889999999999999999999886532 


Q ss_pred             ceeeeeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 FKALDCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 ~~~l~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      ..++...+..        ...+.......++.++++|++|||   +.+|+||||||+||+          |||.++....
T Consensus        84 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~  160 (328)
T cd07856          84 DIYFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARIQDP  160 (328)
T ss_pred             cEEEEeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEeECCCCCEEeCccccccccCC
Confidence            2222221111        123445556678999999999995   678999999999997          8998875432


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .    .....++..|+|||++
T Consensus       161 ~----~~~~~~~~~y~aPE~~  177 (328)
T cd07856         161 Q----MTGYVSTRYYRAPEIM  177 (328)
T ss_pred             C----cCCCcccccccCceee
Confidence            1    1223478899999963

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.61  E-value=2e-15  Score=159.47  Aligned_cols=144  Identities=32%  Similarity=0.488  Sum_probs=105.1

Q ss_pred             ceEecCCceEEEEEEecC-------CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          681 NLIGVGSFGSVYKGRLHD-------GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~-------g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +.||+|+||.||+|+..+       ++.||||.+.... .....+|.+|++++++++||||++++++|...+..++...+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            368999999999998642       2579999886543 23456789999999999999999999998776654432222


Q ss_pred             cC-----------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecc
Q 047196          753 ST-----------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGI  800 (827)
Q Consensus       753 ~~-----------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGl  800 (827)
                      ..                 ...+.+.+.+.++.++++|++|||   +.+++||||||+||+               |||+
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCCCChheEEEecCCCCCCcceEECCccc
Confidence            11                 123566778889999999999996   677999999999987               7787


Q ss_pred             cccccCCCccc-cccceecccccccccC
Q 047196          801 GRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ++......... .....++..|+|||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (269)
T cd05044         158 ARDIYKSDYYRKEGEGLLPVRWMAPESL  185 (269)
T ss_pred             ccccccccccccCcccCCCccccCHHHH
Confidence            76553222111 1112357889999963

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.61  E-value=1.5e-15  Score=159.27  Aligned_cols=147  Identities=29%  Similarity=0.359  Sum_probs=113.8

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +|+..+.||.|+||.||+|+.. +++.||+|++....   ....+.+.+|++++++++|||++++++.+.+++..++...
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            3677889999999999999875 58999999986532   2345789999999999999999999988877665544332


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +..          ...+.......++.++++|+.|||   +.+|+|+||||+||+          |||.+........  
T Consensus        81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~--  155 (258)
T cd05578          81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL--  155 (258)
T ss_pred             CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCcc--
Confidence            221          135667777889999999999996   568999999999998          8998876543321  


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....|+..|+|||++
T Consensus       156 ~~~~~~~~~y~~PE~~  171 (258)
T cd05578         156 TTSTSGTPGYMAPEVL  171 (258)
T ss_pred             ccccCCChhhcCHHHH
Confidence            1223478899999963

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.61  E-value=2e-15  Score=158.93  Aligned_cols=146  Identities=23%  Similarity=0.256  Sum_probs=113.0

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +|+..+.||+|+||.||+|..+ +++.||+|++.... ....+++.+|++++++++|+|++++++.+......++...+.
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            4667788999999999999875 68999999987543 344567899999999999999999999987776555433222


Q ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEEccCCCccee----------eecccccccCCCccc
Q 047196          754 T-----------NCSLNIFDKLNIMIDVASALEYLHFSHS-TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       754 ~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~-~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .           ...+.......++.++++|++|+|   + .+++||||||+||+          |||.++........ 
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~-  157 (265)
T cd06605          82 DGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLH---EKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAK-  157 (265)
T ss_pred             CCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHc---CCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhh-
Confidence            2           134455666789999999999995   5 78999999999998          89988765432211 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                        ...++..|+|||++
T Consensus       158 --~~~~~~~y~~PE~~  171 (265)
T cd06605         158 --TFVGTSSYMAPERI  171 (265)
T ss_pred             --cccCChhccCHHHH
Confidence              14478899999963

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.61  E-value=3.3e-15  Score=163.10  Aligned_cols=148  Identities=25%  Similarity=0.341  Sum_probs=108.2

Q ss_pred             cccccceEecCCceEEEEEEec-C--CcEEEEEEEccc--chHHHHHHHHHHHHHHhcC-CCCceEEEeeeecC----Cc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-D--GIEVAIKVFHQN--CAMALKSFEAECEVMKNIR-HRNHVKRISSCSNE----DF  745 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~--g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~----~~  745 (827)
                      +|+..+.||+|+||.||+++.. +  +..||||++...  .....+.+.+|++++++++ |+|+|++++.+...    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            3667788999999999999864 4  788999998643  2223467889999999995 99999999875432    11


Q ss_pred             eee--eeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          746 KAL--DCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       746 ~~l--~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .++  ++...       ....+++.....++.|++.||+|||   +.+|+||||||+||+          |||+++.+..
T Consensus        81 ~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~  157 (332)
T cd07857          81 LYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGLARGFSE  157 (332)
T ss_pred             EEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHeEEcCCCCEEeCcCCCceeccc
Confidence            111  21111       1234677788889999999999995   678999999999997          9999986543


Q ss_pred             CCcc---ccccceeccccccccc
Q 047196          807 DRSM---IQTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~~---~~~~~~gt~~Y~APE~  826 (827)
                      ....   ......||..|+|||+
T Consensus       158 ~~~~~~~~~~~~~g~~~y~aPE~  180 (332)
T cd07857         158 NPGENAGFMTEYVATRWYRAPEI  180 (332)
T ss_pred             ccccccccccCcccCccccCcHH
Confidence            2211   1122358999999996

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.61  E-value=1.9e-15  Score=165.63  Aligned_cols=149  Identities=28%  Similarity=0.392  Sum_probs=111.6

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC---------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED---------  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~---------  744 (827)
                      .+|...+.||+|+||.||+|+. .+|+.||+|++........+.+.+|++++++++|+|++++++++....         
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5788889999999999999986 468999999987655555677899999999999999999887654432         


Q ss_pred             -------ceeeeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecc
Q 047196          745 -------FKALDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGI  800 (827)
Q Consensus       745 -------~~~l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGl  800 (827)
                             +..+++...      ....+.+.....++.|+++|+.|||   +.+|+||||||+||+           |||+
T Consensus        85 ~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~givH~dikp~Nili~~~~~~~kl~dfg~  161 (342)
T cd07854          85 LTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTEDLVLKIGDFGL  161 (342)
T ss_pred             ccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCceEEECCccc
Confidence                   112222211      1124566777889999999999996   568999999999987           8998


Q ss_pred             cccccCCCcc--ccccceeccccccccc
Q 047196          801 GRLLTGDRSM--IQTETLVTIGYMAPGL  826 (827)
Q Consensus       801 a~~~~~~~~~--~~~~~~gt~~Y~APE~  826 (827)
                      ++.+......  ......++..|+|||+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~  189 (342)
T cd07854         162 ARIVDPHYSHKGYLSEGLVTKWYRSPRL  189 (342)
T ss_pred             ceecCCccccccccccccccccccCHHH
Confidence            8765322111  1122347889999996

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.61  E-value=5.8e-15  Score=155.96  Aligned_cols=148  Identities=25%  Similarity=0.395  Sum_probs=111.2

Q ss_pred             cccccceEecCCceEEEEEEecC--CcEEEEEEEccc----------chHHHHHHHHHHHHHHh-cCCCCceEEEeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHD--GIEVAIKVFHQN----------CAMALKSFEAECEVMKN-IRHRNHVKRISSCSN  742 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~--g~~vAvK~l~~~----------~~~~~~~~~~Ei~~l~~-l~H~niv~~~~~~~~  742 (827)
                      +|+..+.||+|+||.||+|+...  ++.||||++...          ......++.+|++++.+ ++|+|++++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36677889999999999998754  688999987532          12234567889998875 799999999999987


Q ss_pred             CCceeeeeeccC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------ee
Q 047196          743 EDFKALDCLHST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF  798 (827)
Q Consensus       743 ~~~~~l~~l~~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DF  798 (827)
                      .+..++...+..              ...+.+.....++.+++.|+.|||  ...+|+||||||+||+          ||
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh--~~~~i~H~dl~~~nil~~~~~~~~l~df  158 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLH--KEKRIVHRDLTPNNIMLGEDDKVTITDF  158 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--cCCceeecCCCHHHEEECCCCcEEEecc
Confidence            766554333221              123556677889999999999996  2468999999999998          99


Q ss_pred             cccccccCCCccccccceecccccccccC
Q 047196          799 GIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       799 Gla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |.++......  ......|+..|+|||++
T Consensus       159 g~~~~~~~~~--~~~~~~~~~~~~~Pe~~  185 (269)
T cd08528         159 GLAKQKQPES--KLTSVVGTILYSCPEIV  185 (269)
T ss_pred             cceeeccccc--ccccccCcccCcChhhh
Confidence            9988754332  12234589999999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.60  E-value=2.8e-15  Score=161.81  Aligned_cols=143  Identities=27%  Similarity=0.346  Sum_probs=111.3

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .|+..+.||+|+||.||+|+.. ++..||||.+...   .....+++.+|++++++++|+|++++.+++......++...
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            4666788999999999999864 6889999998632   23345678899999999999999999999887766554332


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.          ....+++.+...++.+++.|+.|||   +.+|+||||||+||+          |||++......    
T Consensus        96 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~----  168 (308)
T cd06634          96 YCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----  168 (308)
T ss_pred             ccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHhEEECCCCcEEECCcccceeecCc----
Confidence            21          1223566777889999999999996   568999999999998          88888765322    


Q ss_pred             cccceeccccccccc
Q 047196          812 QTETLVTIGYMAPGL  826 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~  826 (827)
                       ....+++.|+|||+
T Consensus       169 -~~~~~~~~y~aPE~  182 (308)
T cd06634         169 -NXFVGTPYWMAPEV  182 (308)
T ss_pred             -ccccCCccccCHHH
Confidence             22347899999996

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.4e-17  Score=160.87  Aligned_cols=150  Identities=29%  Similarity=0.486  Sum_probs=108.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcc-c-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQ-N-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF------  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~-~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~------  745 (827)
                      ..|+...+||+|.||.||+|+.+ +|+.||+|++-. + .........+|+.+|..++|+|++.+++.|....-      
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r   96 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDR   96 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccc
Confidence            34667789999999999999864 578899987532 1 11223456789999999999999999988854210      


Q ss_pred             --eeee---eec-------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          746 --KALD---CLH-------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       746 --~~l~---~l~-------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                        .++.   +.|       .....++..+..+++.++..||.|+|   ...|+|||+|++|+|          |||+||.
T Consensus        97 ~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dgilklADFGlar~  173 (376)
T KOG0669|consen   97 ATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDGILKLADFGLARA  173 (376)
T ss_pred             ceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCceEEeeccccccc
Confidence              1111   111       12234556667788999999999994   677999999999998          9999987


Q ss_pred             ccCCCcc---ccccceecccccccccC
Q 047196          804 LTGDRSM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~---~~~~~~gt~~Y~APE~l  827 (827)
                      +......   ..+..+.|.+|.+||.+
T Consensus       174 fs~~~n~~kprytnrvvTLwYrppEll  200 (376)
T KOG0669|consen  174 FSTSKNVVKPRYTNRVVTLWYRPPELL  200 (376)
T ss_pred             eecccccCCCCcccceeeeecCCHHHh
Confidence            7543221   23556789999999964

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.60  E-value=4e-15  Score=162.71  Aligned_cols=149  Identities=28%  Similarity=0.338  Sum_probs=109.4

Q ss_pred             ccc-ccceEecCCceEEEEEEec-CCcEEEEEEEcccchHH--------------HHHHHHHHHHHHhcCCCCceEEEee
Q 047196          676 KFS-KENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMA--------------LKSFEAECEVMKNIRHRNHVKRISS  739 (827)
Q Consensus       676 ~~~-~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~--------------~~~~~~Ei~~l~~l~H~niv~~~~~  739 (827)
                      +|. ..+.||+|+||.||+|+.. +++.||||++.......              ...+.+|++++++++|+|+++++++
T Consensus         9 ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   88 (335)
T PTZ00024          9 RYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDV   88 (335)
T ss_pred             chhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEE
Confidence            444 3467999999999999864 68999999985432111              1247789999999999999999999


Q ss_pred             eecCCceeeeeeccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecc
Q 047196          740 CSNEDFKALDCLHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI  800 (827)
Q Consensus       740 ~~~~~~~~l~~l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGl  800 (827)
                      +..+++.++...+..         ...+.......++.++++|++|||   +.+|+||||||+||+          |||+
T Consensus        89 ~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~~~nill~~~~~~kl~dfg~  165 (335)
T PTZ00024         89 YVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLH---KWYFMHRDLSPANIFINSKGICKIADFGL  165 (335)
T ss_pred             EecCCcEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHeEECCCCCEEECCccc
Confidence            887776554332221         123566677889999999999995   678999999999998          9998


Q ss_pred             cccccCCC-------------ccccccceecccccccccC
Q 047196          801 GRLLTGDR-------------SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~-------------~~~~~~~~gt~~Y~APE~l  827 (827)
                      ++....+.             ........++++|+|||++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  205 (335)
T PTZ00024        166 ARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELL  205 (335)
T ss_pred             eeecccccccccccccccccccccccccccccCCCCChhc
Confidence            87654111             0011223468899999974

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.60  E-value=6.1e-15  Score=157.38  Aligned_cols=150  Identities=31%  Similarity=0.353  Sum_probs=117.0

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .++.|+..+.+|+|+||.||+|..+ ++..||+|++..... ..+.+.+|++++++++|+|++++++++......++...
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   95 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVME   95 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEe
Confidence            4456777889999999999999876 688999999976544 45678999999999999999999999887766555333


Q ss_pred             ccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          752 HST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       752 ~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +..           ...+++..+..++.++++|++|||   +.+|+|+|+||+||+          |||++.........
T Consensus        96 ~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  172 (286)
T cd06614          96 YMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSK  172 (286)
T ss_pred             ccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhh
Confidence            222           115777888899999999999995   689999999999997          88887655432211


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....++.+|+|||++
T Consensus       173 -~~~~~~~~~y~~PE~~  188 (286)
T cd06614         173 -RNSVVGTPYWMAPEVI  188 (286)
T ss_pred             -hccccCCcccCCHhHh
Confidence             1223478899999963

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.60  E-value=3.4e-15  Score=162.88  Aligned_cols=149  Identities=29%  Similarity=0.411  Sum_probs=113.6

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-----cee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNED-----FKA  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-----~~~  747 (827)
                      +|...+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|+++++.++|+|++++.+++...+     ..+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4677789999999999999865 58999999987543  334567999999999999999999999887654     222


Q ss_pred             e--eeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 L--DCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 l--~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      +  ++...       ....+++.....++.++++|++|||   +.+|+||||||+||+          |||+++......
T Consensus        81 lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH---~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~  157 (330)
T cd07834          81 IVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDE  157 (330)
T ss_pred             EEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccCceEeecccc
Confidence            2  22211       1225677778889999999999995   678999999999998          999988765432


Q ss_pred             c--cccccceecccccccccC
Q 047196          809 S--MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~--~~~~~~~gt~~Y~APE~l  827 (827)
                      .  .......++..|+|||++
T Consensus       158 ~~~~~~~~~~~~~~y~aPE~~  178 (330)
T cd07834         158 DEKGFLTEYVVTRWYRAPELL  178 (330)
T ss_pred             cccccccccccccCcCCceee
Confidence            1  112234578999999974

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.60  E-value=4.4e-15  Score=166.73  Aligned_cols=155  Identities=26%  Similarity=0.377  Sum_probs=115.5

Q ss_pred             hHHHHHhhcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecC--
Q 047196          668 QDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNE--  743 (827)
Q Consensus       668 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~--  743 (827)
                      +.+...++.|+..++||.|.+|.||+++ .++|+.+|||++..... ..++.+.|.++++.. .|||++.++|++...  
T Consensus        12 ~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~   90 (953)
T KOG0587|consen   12 SSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-EEEEIELEYNMLKKYSHHPNVATFYGAFIKKDP   90 (953)
T ss_pred             hhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-ccHHHHHHHHHHHhccCCCCcceEEEEEEEecC
Confidence            3344456678889999999999999998 56789999999865432 335678889999888 499999999998653  


Q ss_pred             ---Cce--eeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------ee
Q 047196          744 ---DFK--ALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF  798 (827)
Q Consensus       744 ---~~~--~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DF  798 (827)
                         +..  +|++.-.+          ...+.|.....|.+.+..|+.+|   |...++|||+|-.|||          ||
T Consensus        91 ~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HL---H~nkviHRDikG~NiLLT~e~~VKLvDF  167 (953)
T KOG0587|consen   91 GNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHL---HNNKVIHRDIKGQNVLLTENAEVKLVDF  167 (953)
T ss_pred             CCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHH---hhcceeeecccCceEEEeccCcEEEeee
Confidence               333  33333221          12345555667888888899888   4666999999999998          99


Q ss_pred             cccccccCCCccccccceecccccccccC
Q 047196          799 GIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       799 Gla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |+++.+...... ..+.+|||.||||||+
T Consensus       168 GvSaQldsT~gr-RnT~iGtP~WMAPEVi  195 (953)
T KOG0587|consen  168 GVSAQLDSTVGR-RNTFIGTPYWMAPEVI  195 (953)
T ss_pred             eeeeeeeccccc-ccCcCCCcccccceee
Confidence            999887644332 2345699999999986

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.59  E-value=3.9e-15  Score=158.33  Aligned_cols=145  Identities=24%  Similarity=0.306  Sum_probs=108.0

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecC--Cceeeeee
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIR-HRNHVKRISSCSNE--DFKALDCL  751 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~--~~~~l~~l  751 (827)
                      |+..+.||+|+||.||+|+.. +++.||||++.... ........+|+++++++. |+|++++++++.+.  +..++...
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            445678999999999999864 68999999986532 112234457999999986 99999999998876  44333222


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccccCCCcccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~~~~~~~~  812 (827)
                      +.          ....+.+.+...++.++++||+|||   +.+|+||||||+||+         |||+++........  
T Consensus        81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~p~ni~l~~~~~kl~dfg~~~~~~~~~~~--  155 (282)
T cd07831          81 LMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIKPENILIKDDILKLADFGSCRGIYSKPPY--  155 (282)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEcCCCeEEEecccccccccCCCc--
Confidence            11          1234678888999999999999996   568999999999988         88888766433221  


Q ss_pred             ccceeccccccccc
Q 047196          813 TETLVTIGYMAPGL  826 (827)
Q Consensus       813 ~~~~gt~~Y~APE~  826 (827)
                      ....++..|+|||+
T Consensus       156 ~~~~~~~~y~aPE~  169 (282)
T cd07831         156 TEYISTRWYRAPEC  169 (282)
T ss_pred             CCCCCCcccCChhH
Confidence            22347899999995

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.59  E-value=7.1e-15  Score=156.95  Aligned_cols=146  Identities=28%  Similarity=0.324  Sum_probs=110.0

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ceee--e
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKAL--D  749 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~l--~  749 (827)
                      +|+..+.||.|++|.||+|... +++.||+|.+.... .....++.+|++++++++|+||+++++++....  ..++  +
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   81 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME   81 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence            5778899999999999999874 58899999987543 234567899999999999999999999886543  2222  2


Q ss_pred             eecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          750 CLHS------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       750 ~l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +...            ....+.......++.++++|++|||   +.+++||||+|+||+          |||++......
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  158 (287)
T cd06621          82 YCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNS  158 (287)
T ss_pred             ecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecCCeEEEeecccccccccc
Confidence            2211            1122455566789999999999995   678999999999988          99998755322


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..   ....++..|+|||++
T Consensus       159 ~~---~~~~~~~~y~~pE~~  175 (287)
T cd06621         159 LA---GTFTGTSFYMAPERI  175 (287)
T ss_pred             cc---ccccCCccccCHHHh
Confidence            21   122368899999963

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=1.6e-16  Score=182.13  Aligned_cols=155  Identities=24%  Similarity=0.225  Sum_probs=117.4

Q ss_pred             HHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          670 LFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       670 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      +....++|+..++||+|+||.|...+.+ +++.||+|++.+...   .....|..|-.+|.....+-||.+..++.++.+
T Consensus        70 lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~  149 (1317)
T KOG0612|consen   70 LRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERY  149 (1317)
T ss_pred             HhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccc
Confidence            3344578999999999999999999875 588999999976432   234568889999999888889999988888887


Q ss_pred             eeeeeeccCCCC----------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          746 KALDCLHSTNCS----------LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       746 ~~l~~l~~~~~~----------l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      .++...+..++.          +......   ..+|+.+..|+..|+.|.|||||||.|||          |||.+-.+.
T Consensus       150 LYlVMdY~pGGDlltLlSk~~~~pE~~Ar---FY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~  226 (1317)
T KOG0612|consen  150 LYLVMDYMPGGDLLTLLSKFDRLPEDWAR---FYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMD  226 (1317)
T ss_pred             eEEEEecccCchHHHHHhhcCCChHHHHH---HHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcC
Confidence            666444433321          1111111   34555566666668899999999999999          999888777


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .++......++|||-|++||++
T Consensus       227 ~dG~V~s~~aVGTPDYISPEvL  248 (1317)
T KOG0612|consen  227 ADGTVRSSVAVGTPDYISPEVL  248 (1317)
T ss_pred             CCCcEEeccccCCCCccCHHHH
Confidence            7777666677899999999985

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.59  E-value=6.5e-15  Score=156.55  Aligned_cols=140  Identities=23%  Similarity=0.250  Sum_probs=100.4

Q ss_pred             eEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHH---HhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          682 LIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVM---KNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l---~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      +||+|+||.||+++.. +|+.||||.+....   ....+.+.+|..++   ...+|++++++.+++..++..++...+..
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            4899999999999864 68999999986432   11223344554433   34479999999988877665444322221


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          755 ----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       755 ----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                                ...+.+.....++.|++.|++|||   +.+|+||||||+||+          |||+++.......   ..
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~---~~  154 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP---HA  154 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc---cC
Confidence                      234667778889999999999996   567999999999998          9999875533221   22


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..||+.|+|||++
T Consensus       155 ~~~~~~y~aPE~~  167 (279)
T cd05633         155 SVGTHGYMAPEVL  167 (279)
T ss_pred             cCCCcCccCHHHh
Confidence            3589999999963

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.59  E-value=4e-15  Score=156.46  Aligned_cols=141  Identities=27%  Similarity=0.336  Sum_probs=107.9

Q ss_pred             EecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC----
Q 047196          683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST----  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~----  754 (827)
                      ||+|+||.||+++.. +|+.||+|++.....   ...+.+.+|++++++++|+|++++++.+..+...++...+..    
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            589999999999976 489999999865432   345678999999999999999999988877665544332221    


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-------c
Q 047196          755 ------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-------I  811 (827)
Q Consensus       755 ------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-------~  811 (827)
                            ...+++..+..++.++++||+|||   +.+|+||||+|+||+          |||++.........       .
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  157 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKE  157 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccccccccc
Confidence                  124577778899999999999996   678999999999998          89988765433110       1


Q ss_pred             cccceeccccccccc
Q 047196          812 QTETLVTIGYMAPGL  826 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~  826 (827)
                      .....++..|+|||+
T Consensus       158 ~~~~~~~~~~~~Pe~  172 (265)
T cd05579         158 DKRIVGTPDYIAPEV  172 (265)
T ss_pred             ccCcccCccccCHHH
Confidence            122347889999996

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.59  E-value=4e-15  Score=171.89  Aligned_cols=147  Identities=25%  Similarity=0.278  Sum_probs=86.6

Q ss_pred             HhhcccccceEecCCceEEEEEEec-C----CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEee------ee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-D----GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISS------CS  741 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~----g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~------~~  741 (827)
                      ..++|...+.||+|+||.||+|++. +    +..||||++.......  .+..|  .+....+.+++.+...      +.
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e--~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVE--IWMNE--RVRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhH--HHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence            4578999999999999999999864 4    7899999975432211  11111  0111111111111000      01


Q ss_pred             cCCceeeeeeccCCCC------------------------------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCC
Q 047196          742 NEDFKALDCLHSTNCS------------------------------LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLK  791 (827)
Q Consensus       742 ~~~~~~l~~l~~~~~~------------------------------l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK  791 (827)
                      .+...++.+.+.....                              ........++.|+++||+|||   +++|+|||||
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDLK  282 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDVK  282 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcCC
Confidence            1111111111111000                              001123468889999999995   6789999999


Q ss_pred             Cccee-----------eecccccccCCCccccccceeccccccccc
Q 047196          792 PKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       792 ~~NIl-----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      |+|||           |||+|+.+...........++|++|||||.
T Consensus       283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~  328 (566)
T PLN03225        283 PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQ  328 (566)
T ss_pred             HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHH
Confidence            99998           999998764433222334568999999994

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.59  E-value=5.4e-15  Score=157.93  Aligned_cols=148  Identities=22%  Similarity=0.288  Sum_probs=110.4

Q ss_pred             ccccceEecCCceEEEEEEe----cCCcEEEEEEEcccc----hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCcee
Q 047196          677 FSKENLIGVGSFGSVYKGRL----HDGIEVAIKVFHQNC----AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~  747 (827)
                      |+..+.||+|+||.||+++.    .+++.||||++....    ....+.+.+|+++++++ +|+|++++.+.+......+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            56678899999999999974    257889999986432    22345788999999999 5999999988876665544


Q ss_pred             eeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          748 LDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       748 l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +...+..          ...+.+.....++.+++++++|||   +.+++||||||.||+          |||+++.....
T Consensus        82 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  158 (288)
T cd05583          82 LILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAE  158 (288)
T ss_pred             EEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEEECccccccccc
Confidence            4332222          123556667788999999999996   578999999999987          99998876443


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .........|+..|+|||++
T Consensus       159 ~~~~~~~~~~~~~y~aPE~~  178 (288)
T cd05583         159 EEERAYSFCGTIEYMAPEVI  178 (288)
T ss_pred             cccccccccCCccccCHHHh
Confidence            32222223478999999963

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.58  E-value=1.3e-14  Score=151.91  Aligned_cols=147  Identities=28%  Similarity=0.431  Sum_probs=114.4

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||++... ++..||+|++....  ....+++.+|++++++++|+|+++..+.+...+..++...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            3667789999999999999865 68899999987543  24566789999999999999999999988776554442222


Q ss_pred             cC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          753 ST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       753 ~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ..              ...+++.....++.++++|++|||   +.+++|+||||+||+          |||++.......
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~  157 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV  157 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHHeEEcCCCcEEECCccceeecccCc
Confidence            11              244667788899999999999996   568999999999998          899887765443


Q ss_pred             ccccccceeccccccccc
Q 047196          809 SMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~  826 (827)
                      .. .....|++.|+|||+
T Consensus       158 ~~-~~~~~~~~~y~~pe~  174 (258)
T cd08215         158 DL-AKTVVGTPYYLSPEL  174 (258)
T ss_pred             ce-ecceeeeecccChhH
Confidence            21 122458899999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.58  E-value=1.2e-14  Score=153.02  Aligned_cols=140  Identities=24%  Similarity=0.334  Sum_probs=108.0

Q ss_pred             EecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC----
Q 047196          683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST----  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~----  754 (827)
                      ||+|+||.||+|+.. +++.||+|++....   ....+.+.+|++++++++|+|++++++.+.++...++...+..    
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999875 58999999986532   2345679999999999999999999999877765544333222    


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccceec
Q 047196          755 ------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVT  818 (827)
Q Consensus       755 ------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt  818 (827)
                            ...+.......++.++++|++|+|   +++++|+||||+||+          |||+++.......  .....++
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~--~~~~~~~  155 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQK--TWTFCGT  155 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccc--cccccCC
Confidence                  123556677789999999999995   688999999999997          9999887654321  1223478


Q ss_pred             ccccccccC
Q 047196          819 IGYMAPGLL  827 (827)
Q Consensus       819 ~~Y~APE~l  827 (827)
                      ..|+|||++
T Consensus       156 ~~~~~PE~~  164 (262)
T cd05572         156 PEYVAPEII  164 (262)
T ss_pred             cCccChhHh
Confidence            999999963

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.58  E-value=5.5e-15  Score=144.79  Aligned_cols=146  Identities=23%  Similarity=0.321  Sum_probs=105.1

Q ss_pred             cccceEecCCceEEEEEEec-CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCce--eeeeec
Q 047196          678 SKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFK--ALDCLH  752 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~--~l~~l~  752 (827)
                      +....+|.|+.|.|++++.+ +|..+|||.+... .+...++..+.+.++.+-. -|.||+.+||+......  .|+.+.
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs  174 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS  174 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH
Confidence            34466999999999999864 6899999999754 4556678888888777664 79999999998654322  122211


Q ss_pred             c--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          753 S--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       753 ~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      .        ........-.-++...+..||.||.+-|  +|+|||+||+|||          |||++..+.+....  +.
T Consensus       175 ~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAh--tr  250 (391)
T KOG0983|consen  175 TCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAH--TR  250 (391)
T ss_pred             HHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeeccccc--cc
Confidence            1        1122222222356777889999998654  6999999999999          99999877654433  33


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..|-+.|||||-+
T Consensus       251 sAGC~~YMaPERi  263 (391)
T KOG0983|consen  251 SAGCAAYMAPERI  263 (391)
T ss_pred             ccCCccccCcccc
Confidence            4588999999964

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.58  E-value=1.7e-14  Score=150.89  Aligned_cols=149  Identities=26%  Similarity=0.325  Sum_probs=115.4

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Cceeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~~l~~  750 (827)
                      +|...+.||+|++|.||+|... +++.|++|++....  ....+.+.+|++++++++|+|++++++.+...  ...++..
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3667789999999999999875 68999999986543  24567899999999999999999999998876  4444322


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+++.++..++.++++|++|||   +.+++|+|++|+||+          |||.+.........
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  157 (260)
T cd06606          81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETG  157 (260)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEcccccEEeccccccc
Confidence            2221          125677888899999999999996   578999999999998          89888776544321


Q ss_pred             -ccccceecccccccccC
Q 047196          811 -IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 -~~~~~~gt~~Y~APE~l  827 (827)
                       ......++..|+|||++
T Consensus       158 ~~~~~~~~~~~y~~pE~~  175 (260)
T cd06606         158 EGTGSVRGTPYWMAPEVI  175 (260)
T ss_pred             ccccCCCCCccccCHhhh
Confidence             01223478899999963

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.58  E-value=4.4e-15  Score=147.22  Aligned_cols=123  Identities=16%  Similarity=0.193  Sum_probs=89.2

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccchH--H-------HH-----------------HHHHHHHHHHhcCCCCc
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAM--A-------LK-----------------SFEAECEVMKNIRHRNH  733 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~--~-------~~-----------------~~~~Ei~~l~~l~H~ni  733 (827)
                      ...||+|+||.||+|..++|+.||||+++.....  .       ..                 ...+|++.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3579999999999999888999999998643210  0       11                 22459999999988776


Q ss_pred             eEEEeeeecCCceeeeeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          734 VKRISSCSNEDFKALDCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       734 v~~~~~~~~~~~~~l~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      .....+.....+..|+++...        ...++..+...++.++++++.|+|  |+.+|+||||||+||+         
T Consensus        82 ~~p~~~~~~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~--H~~giiHrDlkP~NIli~~~~v~Li  159 (190)
T cd05147          82 PCPEPILLKSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILY--QDCRLVHADLSEYNLLYHDGKLYII  159 (190)
T ss_pred             CCCcEEEecCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH--HhCCcccCCCCHHHEEEECCcEEEE
Confidence            433333233345555555431        234556667889999999999997  4668999999999998         


Q ss_pred             eecccccc
Q 047196          797 DFGIGRLL  804 (827)
Q Consensus       797 DFGla~~~  804 (827)
                      |||+|...
T Consensus       160 DFG~a~~~  167 (190)
T cd05147         160 DVSQSVEH  167 (190)
T ss_pred             EccccccC
Confidence            99998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.58  E-value=1e-14  Score=154.87  Aligned_cols=140  Identities=24%  Similarity=0.308  Sum_probs=106.2

Q ss_pred             EecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC----
Q 047196          683 IGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST----  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~----  754 (827)
                      ||+|+||+||+|.. .+|+.||+|++....   ....+.+.+|++++++++|||++++.+++...+..++...+..    
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999975 468999999986532   1234467889999999999999999998877665444322211    


Q ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccce
Q 047196          755 --------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL  816 (827)
Q Consensus       755 --------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~  816 (827)
                              ...+.+.+...++.++++|+.|||   +.+|+||||||+||+          |||.++.......  .....
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~  155 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK--IKGRA  155 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCc--ccccc
Confidence                    124667778889999999999995   678999999999998          9998876543221  12234


Q ss_pred             ecccccccccC
Q 047196          817 VTIGYMAPGLL  827 (827)
Q Consensus       817 gt~~Y~APE~l  827 (827)
                      ++..|+|||++
T Consensus       156 ~~~~y~~PE~~  166 (277)
T cd05577         156 GTPGYMAPEVL  166 (277)
T ss_pred             CCCCcCCHHHh
Confidence            78899999973

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.57  E-value=2.4e-16  Score=166.00  Aligned_cols=148  Identities=22%  Similarity=0.327  Sum_probs=113.6

Q ss_pred             hcccccceEecCCceEEEEEEecCCc-EEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGI-EVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~-~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .+++....+|-|+||.|-..+.+... .+|+|.+++.   ...+.++...|-++|...+.|.||+++.-+.+..+.+|..
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm  499 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM  499 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence            34555567999999999998876533 4888888653   2445677889999999999999999998888877665521


Q ss_pred             ec----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LH----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ..          ...+.++.....-++..+.+|++||   |+++||.|||||+|.+          |||+||.+......
T Consensus       500 EaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYL---H~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KT  576 (732)
T KOG0614|consen  500 EACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYL---HRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKT  576 (732)
T ss_pred             HhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHH---HhcCceeccCChhheeeccCCceEEeehhhHHHhccCCce
Confidence            11          1233455555566888899999999   5788999999999987          99999998655442


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        .+.+|||.|+|||++
T Consensus       577 --wTFcGTpEYVAPEII  591 (732)
T KOG0614|consen  577 --WTFCGTPEYVAPEII  591 (732)
T ss_pred             --eeecCCcccccchhh
Confidence              457799999999986

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.57  E-value=1.4e-14  Score=154.00  Aligned_cols=140  Identities=23%  Similarity=0.257  Sum_probs=101.6

Q ss_pred             eEecCCceEEEEEEe-cCCcEEEEEEEcccch---HHHHHHHHHH---HHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          682 LIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA---MALKSFEAEC---EVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~Ei---~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      +||+|+||.||+|+. .+|+.||+|++.....   .....+..|.   +.++...|++++++.+++..++..++...+..
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999986 4689999999865321   1122334443   34555679999999988877665544332221


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          755 ----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       755 ----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                                ...+.+..+..++.++++|++|||   +++|+||||||+||+          |||+++.......   ..
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~---~~  154 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP---HA  154 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCC---cC
Confidence                      234677888899999999999996   578999999999987          9999875533221   22


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..|+..|+|||++
T Consensus       155 ~~~~~~y~aPE~~  167 (278)
T cd05606         155 SVGTHGYMAPEVL  167 (278)
T ss_pred             cCCCcCCcCcHHh
Confidence            3589999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.57  E-value=1.7e-14  Score=153.73  Aligned_cols=146  Identities=29%  Similarity=0.461  Sum_probs=108.5

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhc---CCCCceEEEeeeecCCc-----
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNI---RHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l---~H~niv~~~~~~~~~~~-----  745 (827)
                      |+..+.||+|+||.||+|+.+ +++.||||++....  ......+.+|+++++++   +|+|++++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            456788999999999999976 48999999986432  12234567788877766   59999999999876553     


Q ss_pred             eee--eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          746 KAL--DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       746 ~~l--~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      .++  ++...         ....+.+.....++.++++||+|||   +.+|+|+|+||+||+          |||+++..
T Consensus        81 ~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~  157 (287)
T cd07838          81 LTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARIY  157 (287)
T ss_pred             eEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhEEEccCCCEEEeccCcceec
Confidence            222  22111         1124678888999999999999996   567999999999997          99988776


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ......  ....++..|+|||++
T Consensus       158 ~~~~~~--~~~~~~~~~~~PE~~  178 (287)
T cd07838         158 SFEMAL--TSVVVTLWYRAPEVL  178 (287)
T ss_pred             cCCccc--ccccccccccChHHh
Confidence            433221  223478899999963

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.56  E-value=7.5e-15  Score=156.21  Aligned_cols=147  Identities=29%  Similarity=0.359  Sum_probs=112.6

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      |+..+.||+|++|.||+|... +|+.||+|++.....  .....+.+|++++++++|+++++.++++..++..++...+.
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            445678999999999999864 689999999865432  24567889999999999999999999887766444322221


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 ----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                                ....+++.....++.++++|+.|||   +.+|+|+||||+||+          |||.+........ ...
T Consensus        81 ~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~-~~~  156 (283)
T cd05118          81 DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVR-PYT  156 (283)
T ss_pred             CCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcc-ccc
Confidence                      1235677788899999999999996   578999999999998          8998877654431 112


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||++
T Consensus       157 ~~~~~~~~~~PE~~  170 (283)
T cd05118         157 HYVVTRWYRAPELL  170 (283)
T ss_pred             CccCcccccCcHHH
Confidence            23478899999963

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.56  E-value=3.6e-16  Score=170.07  Aligned_cols=149  Identities=25%  Similarity=0.383  Sum_probs=114.8

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc--eeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF--KALDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~--~~l~~  750 (827)
                      .++|+....+|.|.||.||||+. ..++..|||+++.......+-..+|+-+++..+|+|||.++|.|...+.  ..|++
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEe
Confidence            35688889999999999999986 4689999999987655566677889999999999999999998866543  33443


Q ss_pred             eccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          751 LHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       751 l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .-.+        -+.+...+.-.+++...+|++||   |+.+-+|||||-.||+          |||.+..+...-. ..
T Consensus        94 cgggslQdiy~~TgplselqiayvcRetl~gl~yl---hs~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~-Kr  169 (829)
T KOG0576|consen   94 CGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYL---HSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIA-KR  169 (829)
T ss_pred             cCCCcccceeeecccchhHHHHHHHhhhhccchhh---hcCCcccccccccceeecccCceeecccCchhhhhhhhh-hh
Confidence            3221        23455556666778888899998   5778899999999999          9998876643211 12


Q ss_pred             ccceeccccccccc
Q 047196          813 TETLVTIGYMAPGL  826 (827)
Q Consensus       813 ~~~~gt~~Y~APE~  826 (827)
                      .+..||++||||||
T Consensus       170 ksfiGtpywmapEv  183 (829)
T KOG0576|consen  170 KSFIGTPYWMAPEV  183 (829)
T ss_pred             hcccCCccccchhH
Confidence            34569999999997

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.56  E-value=1.9e-14  Score=156.85  Aligned_cols=113  Identities=21%  Similarity=0.270  Sum_probs=87.9

Q ss_pred             ceEecC--CceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC-
Q 047196          681 NLIGVG--SFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       681 ~~iG~G--~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      ..||+|  +||+||+|+. .+|+.||||++....  ....+.+.+|+.+++.++|||||++++++..++..++...+.. 
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            346666  9999999986 478999999986432  3345778999999999999999999999987765544222211 


Q ss_pred             -----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          755 -----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       755 -----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                                 ...+.+.....++.++++||+|||   +.+|+||||||+||+
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlkp~Nil  133 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKASHIL  133 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEE
Confidence                       123455666789999999999995   678999999999998

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.56  E-value=1.1e-14  Score=154.68  Aligned_cols=148  Identities=29%  Similarity=0.380  Sum_probs=113.3

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l~~  750 (827)
                      +|...+.||+|+||.||+|+.. +|..||+|++....   ....+.+.+|++++++++ |+|++++++.+...+..++..
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            5777889999999999999865 68999999986532   233467889999999999 999999998887665544432


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc-
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS-  809 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~-  809 (827)
                      .+..          ...+.+.....++.+++.|++|||   +.+++|+||||+||+          |||++........ 
T Consensus        82 e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~  158 (280)
T cd05581          82 EYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSP  158 (280)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEecCCccccccCCcccc
Confidence            2221          235678888999999999999996   568999999999998          9999876643321 


Q ss_pred             ------------------cccccceeccccccccc
Q 047196          810 ------------------MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ------------------~~~~~~~gt~~Y~APE~  826 (827)
                                        .......++..|+|||+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~  193 (280)
T cd05581         159 ESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPEL  193 (280)
T ss_pred             ccCCCCCccccccccccccccccccCCccccCHHH
Confidence                              11112347889999996

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.55  E-value=1.2e-14  Score=151.99  Aligned_cols=145  Identities=23%  Similarity=0.332  Sum_probs=112.1

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +|+..+.||+|+||.||+++. .+++.+|+|++....  .....++.+|++++++++|+|++++.+++......++...+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            367778999999999999975 468899999986432  33456788999999999999999999888776554443322


Q ss_pred             cCC--------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          753 STN--------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       753 ~~~--------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ...              ..+++.....++.++++|++|||   +.+++||||||+||+          |||+++......
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~  157 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNM  157 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEEecCCcEEEeeccchhhhccCC
Confidence            211              23566667789999999999995   778999999999987          999988775442


Q ss_pred             ccccccceeccccccccc
Q 047196          809 SMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~  826 (827)
                      .   ....+++.|+|||+
T Consensus       158 ~---~~~~~~~~~~~Pe~  172 (256)
T cd08530         158 A---KTQIGTPHYMAPEV  172 (256)
T ss_pred             c---ccccCCccccCHHH
Confidence            1   22347899999996

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.55  E-value=3.5e-15  Score=142.47  Aligned_cols=147  Identities=22%  Similarity=0.428  Sum_probs=111.4

Q ss_pred             HhhcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCcee--e
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKA--L  748 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~--l  748 (827)
                      ..++|+..+++|+|.|+.||.|. ..+.+.++||+++.   ...+...+|+.+|..++ |||||++++...++....  +
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP---VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL  112 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP---VKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL  112 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeech---HHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence            44678888999999999999997 56678899999853   34567889999999998 999999999887765332  2


Q ss_pred             eeeccCC-------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCcc
Q 047196          749 DCLHSTN-------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       749 ~~l~~~~-------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~  810 (827)
                      .+.+..+       ..+...+......++..||.|+   |+.||+|||+||.|++           |.|+|..+......
T Consensus       113 iFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyC---HS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eY  189 (338)
T KOG0668|consen  113 IFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYC---HSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEY  189 (338)
T ss_pred             HhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHH---HhcCcccccCCcceeeechhhceeeeeecchHhhcCCCcee
Confidence            2222111       2344555566777888888887   6899999999999987           99999988655442


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ...+.+..|-.||.+
T Consensus       190 --nVRVASRyfKGPELL  204 (338)
T KOG0668|consen  190 --NVRVASRYFKGPELL  204 (338)
T ss_pred             --eeeeehhhcCCchhe
Confidence              234578888999964

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.55  E-value=1.5e-14  Score=154.02  Aligned_cols=146  Identities=26%  Similarity=0.319  Sum_probs=110.1

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccch-HHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceeeeeecc
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-MALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      |...+.||+|+||.||+|+.. +++.||||++..... .......+|++.+++++ |+|++++++++...+..++...+.
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            456688999999999999975 578999999865322 22234567999999999 999999999887765544322211


Q ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          754 T-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 ~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .           ...+.+.....++.+++.++.|||   +.+|+|+||||+||+          |||+++.......  .
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~--~  155 (283)
T cd07830          81 EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP--Y  155 (283)
T ss_pred             CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCC--c
Confidence            1           124677888899999999999996   568999999999998          9998876543222  1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++..|+|||++
T Consensus       156 ~~~~~~~~~~aPE~~  170 (283)
T cd07830         156 TDYVSTRWYRAPEIL  170 (283)
T ss_pred             CCCCCcccccCceee
Confidence            224578999999963

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.55  E-value=1.2e-14  Score=154.64  Aligned_cols=147  Identities=30%  Similarity=0.391  Sum_probs=111.9

Q ss_pred             ccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      |+..+.||+|+||.||+|+.. +++.||+|++....  ....+.+.+|++++++++|+|++++.+++.+.+..++...+.
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            445678999999999999865 58999999987542  233467889999999999999999999987765544433221


Q ss_pred             C----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 T----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .          ...+++..+..++.++++|++|||   +.+|+||||||+||+          |||.++........ ..
T Consensus        81 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~-~~  156 (282)
T cd07829          81 DMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRT-YT  156 (282)
T ss_pred             CcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccc-cC
Confidence            1          135677788899999999999996   568999999999998          89988766433221 12


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...++..|+|||++
T Consensus       157 ~~~~~~~~~aPE~~  170 (282)
T cd07829         157 HEVVTLWYRAPEIL  170 (282)
T ss_pred             ccccCcCcCChHHh
Confidence            23467889999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.54  E-value=9.5e-15  Score=160.22  Aligned_cols=147  Identities=25%  Similarity=0.356  Sum_probs=111.1

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc----
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF----  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~----  745 (827)
                      ..++|+..+.||+|+||.||+|+.. ++..||||++...  .....+.+.+|+.++++++|+|++++.+++...+.    
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            4567888999999999999999875 5889999998643  22334567889999999999999998876654332    


Q ss_pred             --eeeeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          746 --KALDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       746 --~~l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                        .++...+.        ....+++.+...++.++++|++|||   +.+|+||||||+||+          |||++....
T Consensus        93 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (343)
T cd07851          93 QDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTD  169 (343)
T ss_pred             ccEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEcccccccccc
Confidence              22211111        1234677788889999999999995   578999999999987          899987654


Q ss_pred             CCCccccccceeccccccccc
Q 047196          806 GDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ..    .....++..|+|||+
T Consensus       170 ~~----~~~~~~~~~y~aPE~  186 (343)
T cd07851         170 DE----MTGYVATRWYRAPEI  186 (343)
T ss_pred             cc----ccCCcccccccCHHH
Confidence            32    122357889999996

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.53  E-value=8.5e-15  Score=137.96  Aligned_cols=146  Identities=25%  Similarity=0.311  Sum_probs=103.7

Q ss_pred             cccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHh-cCCCCceEEEeeeecCCceee--eeec
Q 047196          678 SKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-AMALKSFEAECEVMKN-IRHRNHVKRISSCSNEDFKAL--DCLH  752 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~-l~H~niv~~~~~~~~~~~~~l--~~l~  752 (827)
                      .....||+|+||.|-+-++ .+|...|||+++..- .+..++..+|+.+..+ ..-|.+|.++|.+.++....+  +.+.
T Consensus        49 ~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~  128 (282)
T KOG0984|consen   49 VGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMD  128 (282)
T ss_pred             hhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhh
Confidence            3446699999999999885 479999999987542 3445677888876544 468999999998876553322  1111


Q ss_pred             -----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          753 -----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       753 -----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                                 ..+.....+-.=+||..|.+||.|||.  +-.|||||+||+|||          |||++..+.+.-  +
T Consensus       129 tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSi--A  204 (282)
T KOG0984|consen  129 TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSI--A  204 (282)
T ss_pred             hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccceeehhhh--H
Confidence                       011222333344799999999999984  567999999999999          999987765432  2


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .+...|-..|||||.+
T Consensus       205 kt~daGCkpYmaPEri  220 (282)
T KOG0984|consen  205 KTMDAGCKPYMAPERI  220 (282)
T ss_pred             HHHhcCCCccCChhhc
Confidence            2323477789999964

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.53  E-value=2.9e-14  Score=154.40  Aligned_cols=141  Identities=17%  Similarity=0.196  Sum_probs=99.9

Q ss_pred             EecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC------
Q 047196          683 IGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST------  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~------  754 (827)
                      +|.|+++.||+++. +|+.||||++...  .....+.+.+|++++++++|+|++++++++...+..++.+.+..      
T Consensus        10 ~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   88 (314)
T cd08216          10 FEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCED   88 (314)
T ss_pred             hcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHH
Confidence            44445555555444 6899999998654  34456789999999999999999999998877665554332221      


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc------cc
Q 047196          755 ------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM------IQ  812 (827)
Q Consensus       755 ------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~------~~  812 (827)
                            ...+.......++.++++||+|||   +.+|+||||||+||+          |||.+.........      ..
T Consensus        89 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~  165 (314)
T cd08216          89 LLKTHFPEGLPELAIAFILKDVLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFP  165 (314)
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCcceEEEecCCceEEecCccceeecccccccccccccc
Confidence                  123455666789999999999996   567999999999998          78877654322110      11


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....++..|+|||++
T Consensus       166 ~~~~~~~~y~aPE~~  180 (314)
T cd08216         166 KSSVKNLPWLSPEVL  180 (314)
T ss_pred             ccccccccccCHHHh
Confidence            123367899999973

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=7.5e-15  Score=146.84  Aligned_cols=150  Identities=25%  Similarity=0.293  Sum_probs=106.1

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce--e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK--A  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~--~  747 (827)
                      .++|+..+++|+|.||+|..++- .+|+.+|+|++++..   ......-..|-++|+..+||.+..+-..+...+..  +
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            35788889999999999999985 479999999997642   23345567799999999999887654443333221  2


Q ss_pred             eeeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          748 LDCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       748 l~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      |++...+        ....+.....-+...|..||.|||   +++||.||+|.+|++          |||+.|---..+.
T Consensus       247 MeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~  323 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGD  323 (516)
T ss_pred             EEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhh---hCCeeeeechhhhheeccCCceEeeecccchhcccccc
Confidence            2222111        112333333446678888999995   689999999999987          9999986433333


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . ....+|||.|.||||+
T Consensus       324 t-~kTFCGTPEYLAPEVl  340 (516)
T KOG0690|consen  324 T-TKTFCGTPEYLAPEVL  340 (516)
T ss_pred             e-eccccCChhhcCchhh
Confidence            2 2346799999999986

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=7.6e-14  Score=146.60  Aligned_cols=139  Identities=27%  Similarity=0.323  Sum_probs=102.1

Q ss_pred             ceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHH-HHhcCCCCceEEEeeeecCCceeeeeeccCC
Q 047196          681 NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEV-MKNIRHRNHVKRISSCSNEDFKALDCLHSTN  755 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~-l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~  755 (827)
                      +.||+|+||.||+|+.. +|+.||||+++....   .....+..|..+ ....+|+|++++++++...+..++...+...
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            46899999999999864 689999999865321   122344555554 4455899999999999877655553333221


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccc
Q 047196          756 ----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET  815 (827)
Q Consensus       756 ----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~  815 (827)
                                ..+.......++.++++||.|||   +.+|+||||||+||+          |||+++.....     ...
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~-----~~~  153 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN-----KKF  153 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEeecccceecccc-----ccC
Confidence                      34566677889999999999995   578999999999997          89988754321     123


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .|+..|+|||++
T Consensus       154 ~~~~~y~~pe~~  165 (260)
T cd05611         154 VGTPDYLAPETI  165 (260)
T ss_pred             CCCcCccChhhh
Confidence            478899999963

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.52  E-value=1e-13  Score=146.30  Aligned_cols=147  Identities=20%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             hHHHHHhhcccccceE--ecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecC
Q 047196          668 QDLFRATEKFSKENLI--GVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNE  743 (827)
Q Consensus       668 ~~~~~~~~~~~~~~~i--G~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~  743 (827)
                      .+.....++|+..+.+  |+|+||.||+++. .+++.+|+|........   .  .|+.....+ +|+|++++++++...
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~---~--~e~~~~~~~~~h~~iv~~~~~~~~~   81 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN---A--IEPMVHQLMKDNPNFIKLYYSVTTL   81 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc---h--hhHHHHHHhhcCCCEEEEEEEEecC
Confidence            3444445566666665  9999999999986 46889999998543211   1  122222222 699999999999877


Q ss_pred             CceeeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccc
Q 047196          744 DFKALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGR  802 (827)
Q Consensus       744 ~~~~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~  802 (827)
                      +..++...+..          ...+.+.+...++.|+++|++|||   +.+|+||||||+||+           |||+++
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~  158 (267)
T PHA03390         82 KGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYDRAKDRIYLCDYGLCK  158 (267)
T ss_pred             CeeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEeCCCCeEEEecCccce
Confidence            65544332221          235678888899999999999995   677999999999988           788776


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....     ....|+..|+|||++
T Consensus       159 ~~~~~-----~~~~~~~~y~aPE~~  178 (267)
T PHA03390        159 IIGTP-----SCYDGTLDYFSPEKI  178 (267)
T ss_pred             ecCCC-----ccCCCCCcccChhhh
Confidence            54322     123478999999974

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.52  E-value=2e-14  Score=150.93  Aligned_cols=147  Identities=27%  Similarity=0.369  Sum_probs=107.3

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEccc-----chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-----CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-----~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      +|...+.||+|+||.||+++.. .+..+++|.++..     ......++.+|++++++++|||++++++++.+.+...+.
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            3667789999999999999864 3455666665421     122334677899999999999999999888766544433


Q ss_pred             eeccC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccccC
Q 047196          750 CLHST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLTG  806 (827)
Q Consensus       750 ~l~~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~~  806 (827)
                      ..+..              ...+++.....++.++++|+.|||   +.+++|+|+||+||+         |||+++....
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~~~nili~~~~~~l~d~g~~~~~~~  157 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKNNLLKIGDFGVSRLLMG  157 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH---HcCccccCCChhheEeecCCEeecccCceeecCC
Confidence            22211              234667778889999999999995   678999999999987         8998877643


Q ss_pred             CCccccccceeccccccccc
Q 047196          807 DRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~  826 (827)
                      .... .....|++.|+|||+
T Consensus       158 ~~~~-~~~~~~~~~~~~pe~  176 (260)
T cd08222         158 SCDL-ATTFTGTPYYMSPEA  176 (260)
T ss_pred             Cccc-ccCCCCCcCccCHHH
Confidence            3221 122347889999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.51  E-value=1.2e-13  Score=137.44  Aligned_cols=125  Identities=18%  Similarity=0.230  Sum_probs=92.6

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccchH--------------------------HHHHHHHHHHHHHhcCCCCc
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAM--------------------------ALKSFEAECEVMKNIRHRNH  733 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~--------------------------~~~~~~~Ei~~l~~l~H~ni  733 (827)
                      ...||+|+||.||+|+..+|+.||||+++.....                          ....+.+|.+.+.+++|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3679999999999999778999999998753210                          01234689999999999987


Q ss_pred             eEEEeeeecCCceeeeeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          734 VKRISSCSNEDFKALDCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       734 v~~~~~~~~~~~~~l~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      .....+...+.+..++++...        ...++..+...++.+++.++.++|+  ..+|+||||||+||+         
T Consensus        82 ~~p~~~~~~~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~--~~givHrDlkP~NIll~~~~~~li  159 (190)
T cd05145          82 PVPEPILLKKNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQ--EAGLVHGDLSEYNILYHDGKPYII  159 (190)
T ss_pred             CCceEEEecCCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHH--hCCEecCCCChhhEEEECCCEEEE
Confidence            544444334455556665432        1224445677899999999999973  368999999999988         


Q ss_pred             eecccccccC
Q 047196          797 DFGIGRLLTG  806 (827)
Q Consensus       797 DFGla~~~~~  806 (827)
                      |||+|+....
T Consensus       160 DFG~a~~~~~  169 (190)
T cd05145         160 DVSQAVELDH  169 (190)
T ss_pred             EcccceecCC
Confidence            9999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.50  E-value=6.7e-14  Score=145.93  Aligned_cols=140  Identities=29%  Similarity=0.345  Sum_probs=107.7

Q ss_pred             EecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC----
Q 047196          683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST----  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~----  754 (827)
                      ||+|+||.||++... +++.||+|++....   ....+.+..|++++++++|+|++++++.+..+...++...+..    
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            689999999999865 58999999986543   2245678999999999999999999988877665444222221    


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccceec
Q 047196          755 ------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVT  818 (827)
Q Consensus       755 ------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt  818 (827)
                            ...+++.....++.++++|+.|+|   +.+++|+||||+||+          |||++......... .....++
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~-~~~~~~~  156 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSR-TNTFCGT  156 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcceEEEcCCCcEEEeecCcceecccCCCc-ccCCcCC
Confidence                  224677788889999999999996   578999999999998          89988766443211 1223478


Q ss_pred             cccccccc
Q 047196          819 IGYMAPGL  826 (827)
Q Consensus       819 ~~Y~APE~  826 (827)
                      .+|+|||+
T Consensus       157 ~~~~~Pe~  164 (250)
T cd05123         157 PEYLAPEV  164 (250)
T ss_pred             ccccChHH
Confidence            89999996

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.49  E-value=3e-14  Score=148.47  Aligned_cols=125  Identities=27%  Similarity=0.345  Sum_probs=97.0

Q ss_pred             HhhcccccceEecCCceEEEEEEec----CCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCcee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~  747 (827)
                      ....|...++||+|.|++||+|.+.    ..+.||+|.+....  ...+...|+++|..+. +.|++++.++....+...
T Consensus        34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~  111 (418)
T KOG1167|consen   34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVA  111 (418)
T ss_pred             hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCCeeE
Confidence            3456788899999999999999742    46789999985432  2356889999999996 788999988887777655


Q ss_pred             eeeeccCC-------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccc
Q 047196          748 LDCLHSTN-------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGR  802 (827)
Q Consensus       748 l~~l~~~~-------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~  802 (827)
                      ...-|.+.       ..++..+...+...+.+||+++   |..+|||||+||+|+|           |||+|.
T Consensus       112 ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~---h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  112 IVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHL---HKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             EEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhh---hccCccccCCCccccccccccCCceEEechhHH
Confidence            43333222       2355566667788888899988   6899999999999988           999986

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=4.9e-14  Score=164.78  Aligned_cols=114  Identities=38%  Similarity=0.648  Sum_probs=62.9

Q ss_pred             ccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCCc---CCceEeCcC
Q 047196          502 ILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSF  578 (827)
Q Consensus       502 L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~  578 (827)
                      ++.|+|++|.++|.+|.+++.++.|+.|+|++|+|+|.+|..++.+++|+.|||++|+++|.+|+.++   +|+.|||++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            34455555555555555555555555555555555555555555555555555555555555554332   445555555


Q ss_pred             CcCeecCCCC--CCCCCCcccccccCccccCCCCCCCcccc
Q 047196          579 NKLEGEIPRG--GPFANFTAKSFMGNEKLCGLPNLQFPKCK  617 (827)
Q Consensus       579 N~l~g~ip~~--~~~~~~~~~~~~~n~~lc~~p~~~~~~c~  617 (827)
                      |+++|.+|..  ..+.......+.+|+.+|+.|..  +.|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l--~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL--RACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCC--CCCc
Confidence            5555555542  11122334567889999997643  5675

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.47  E-value=4.5e-13  Score=136.96  Aligned_cols=147  Identities=29%  Similarity=0.428  Sum_probs=112.9

Q ss_pred             ccccceEecCCceEEEEEEecC-CcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          677 FSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      |+..+.||+|++|.||+|...+ ++.+|+|.+...... ..+.+.+|++.+++++|+|++++++++...+..++...+..
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            4456789999999999998764 889999999765444 56789999999999999999999999877655444222211


Q ss_pred             C----------CC-CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          755 N----------CS-LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       755 ~----------~~-l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .          .. +++.....++.++++++.|+|   +.+++|+|++|.||+          |||.+............
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~  157 (225)
T smart00221       81 GGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLH---SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLK  157 (225)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccccccc
Confidence            1          12 667777889999999999996   558999999999988          99988876544311112


Q ss_pred             cceeccccccccc
Q 047196          814 ETLVTIGYMAPGL  826 (827)
Q Consensus       814 ~~~gt~~Y~APE~  826 (827)
                      ...++..|++||+
T Consensus       158 ~~~~~~~~~~pe~  170 (225)
T smart00221      158 TVKGTPFYLAPEV  170 (225)
T ss_pred             ceeccCCcCCHhH
Confidence            2347889999996

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.46  E-value=1.3e-13  Score=161.01  Aligned_cols=148  Identities=28%  Similarity=0.435  Sum_probs=109.4

Q ss_pred             ccccceEecCCceEEEEEEec----C----CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCce
Q 047196          677 FSKENLIGVGSFGSVYKGRLH----D----GIEVAIKVFHQNC-AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFK  746 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~----~----g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~  746 (827)
                      ....+.+|+|.||.|++|...    .    ...||||.++... ..+.+.+..|+++|+.+. |+|+|.++|+|......
T Consensus       298 l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~  377 (609)
T KOG0200|consen  298 LKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPL  377 (609)
T ss_pred             ccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCce
Confidence            344458999999999999743    1    3569999987543 345678999999999995 99999999999885443


Q ss_pred             eeeeecc-----------CC---------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----
Q 047196          747 ALDCLHS-----------TN---------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----  796 (827)
Q Consensus       747 ~l~~l~~-----------~~---------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----  796 (827)
                      ++...+.           ..               ..+...+.+.++.|||.|++||   .+.++||||+-+.|||    
T Consensus       378 ~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L---~~~~~vHRDLAaRNVLi~~~  454 (609)
T KOG0200|consen  378 YVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYL---ASVPCVHRDLAARNVLITKN  454 (609)
T ss_pred             EEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHH---hhCCccchhhhhhhEEecCC
Confidence            3311111           11               1377788899999999999999   5677999999999999    


Q ss_pred             ------eecccccccCCCcccccccee--cccccccccC
Q 047196          797 ------DFGIGRLLTGDRSMIQTETLV--TIGYMAPGLL  827 (827)
Q Consensus       797 ------DFGla~~~~~~~~~~~~~~~g--t~~Y~APE~l  827 (827)
                            |||+||....+.........|  ...|||||-+
T Consensus       455 ~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl  493 (609)
T KOG0200|consen  455 KVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESL  493 (609)
T ss_pred             CEEEEccccceeccCCCCceEecCCCCccceeecCHHHh
Confidence                  999999765443322111222  4469999953

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=1.4e-13  Score=148.76  Aligned_cols=124  Identities=24%  Similarity=0.330  Sum_probs=92.3

Q ss_pred             ccccceEecCCceEEEEEE-ecCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee--eee
Q 047196          677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA--LDC  750 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~--l~~  750 (827)
                      |-..+.||-|+||+|..++ .++...+|+|.+++.+   ..+....+.|-.||+..+.+-+|+++..+.+.+..+  |++
T Consensus       631 Fvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdY  710 (1034)
T KOG0608|consen  631 FVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDY  710 (1034)
T ss_pred             eEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEec
Confidence            6666789999999999997 4556779999997654   234567889999999999999999999988877544  455


Q ss_pred             eccCCC--------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          751 LHSTNC--------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       751 l~~~~~--------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      +-.++.        .+...-..-++..++.|+++.   |..++|||||||.|||          |||+..-
T Consensus       711 IPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesV---HkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTG  778 (1034)
T KOG0608|consen  711 IPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESV---HKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  778 (1034)
T ss_pred             cCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHH---HhccceecccCccceEEccCCceeeeecccccc
Confidence            443321        111111223455677788888   6889999999999999          9998643

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.41  E-value=8.9e-13  Score=136.49  Aligned_cols=130  Identities=18%  Similarity=0.101  Sum_probs=95.9

Q ss_pred             CCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCC---------
Q 047196          686 GSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTN---------  755 (827)
Q Consensus       686 G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~---------  755 (827)
                      |.||.||+++. .+|+.||+|++....     .+.+|...+....|||++++++++.+.+..++...+...         
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            89999999986 468999999986542     234566666667899999999998776655543332221         


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccceeccccccc
Q 047196          756 -CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP  824 (827)
Q Consensus       756 -~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt~~Y~AP  824 (827)
                       ..+.+.....++.++++|++|+|   +++|+||||||+||+          |||.++......    ....++..|+||
T Consensus        79 ~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~----~~~~~~~~y~aP  151 (237)
T cd05576          79 FLNIPEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC----DGEAVENMYCAP  151 (237)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEecccchhcccccc----ccCCcCccccCC
Confidence             23566777889999999999995   678999999999998          888775543221    122357789999


Q ss_pred             ccC
Q 047196          825 GLL  827 (827)
Q Consensus       825 E~l  827 (827)
                      |++
T Consensus       152 E~~  154 (237)
T cd05576         152 EVG  154 (237)
T ss_pred             ccc
Confidence            963

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.40  E-value=7.2e-14  Score=143.89  Aligned_cols=149  Identities=23%  Similarity=0.264  Sum_probs=101.3

Q ss_pred             hcccccceEecCCceEEEEEEecC-CcEEEEEEEcccchH---HHHHHHHHHHHHHhcC-CCCceEEEeeeecCC--cee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAM---ALKSFEAECEVMKNIR-HRNHVKRISSCSNED--FKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~---~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~--~~~  747 (827)
                      .+|....+||+|+||+|..|+.++ .+.+|||+++++..-   ..+--..|-++|+--. -|.+|++..++...+  +.+
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFV  428 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFV  428 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeE
Confidence            368888999999999999998764 677999999764311   1122234555655443 455666555544433  333


Q ss_pred             eeeeccCC--------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          748 LDCLHSTN--------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       748 l~~l~~~~--------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      |++...++        +........-+|..||-||-+|   |+++||.||||..||+          |||+.+--..++.
T Consensus       429 MEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFL---h~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~  505 (683)
T KOG0696|consen  429 MEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFL---HSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGV  505 (683)
T ss_pred             EEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhh---hcCCeeeeeccccceEeccCCceEeeecccccccccCCc
Confidence            44433221        2333444567888999999999   6899999999999998          9999986433333


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      .. .+.+|||-|||||++
T Consensus       506 TT-kTFCGTPdYiAPEIi  522 (683)
T KOG0696|consen  506 TT-KTFCGTPDYIAPEII  522 (683)
T ss_pred             ce-eeecCCCcccccceE
Confidence            22 336799999999985

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=6.3e-13  Score=133.48  Aligned_cols=150  Identities=23%  Similarity=0.265  Sum_probs=105.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCcee-
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKA-  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~-  747 (827)
                      ..+|+..++||+|+|++|..++++ +.+.+|+|++++.   ..+.....+.|-.+..+. .||.+|-+..++..+...+ 
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff  328 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF  328 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence            467888999999999999999865 5788999998642   223344556666666655 5899998887766554332 


Q ss_pred             -eeeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 -LDCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 -l~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +++...+        ...+......-+...|.-||.||   |+++||.||+|..|||          |+|+.|--..++
T Consensus       329 vieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~fl---h~rgiiyrdlkldnvlldaeghikltdygmcke~l~~g  405 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFL---HERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPG  405 (593)
T ss_pred             EEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHH---hhcCeeeeeccccceEEccCCceeecccchhhcCCCCC
Confidence             2332221        12333333444666777788777   6899999999999998          999988654443


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ... .+.+|||.|+|||++
T Consensus       406 d~t-stfcgtpnyiapeil  423 (593)
T KOG0695|consen  406 DTT-STFCGTPNYIAPEIL  423 (593)
T ss_pred             ccc-ccccCCCcccchhhh
Confidence            332 346799999999975

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.37  E-value=4.2e-13  Score=134.94  Aligned_cols=147  Identities=26%  Similarity=0.353  Sum_probs=105.9

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF------  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~------  745 (827)
                      .+|.....+|.|.- .|.-|... .+++||+|++...-  ....++..+|..++..+.|+|+|+++.++.-...      
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e   95 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE   95 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence            35666677888877 56666432 57899999985431  2345677899999999999999999988754321      


Q ss_pred             --eeeeeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          746 --KALDCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       746 --~~l~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                        ..++++...     ...++......|..|+..|+.||   |+.+|+||||||+||+          |||+|+.-..+ 
T Consensus        96 ~y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~l---hs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~-  171 (369)
T KOG0665|consen   96 VYLVMELMDANLCQVILMELDHETISYILYQMLCGIKHL---HSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD-  171 (369)
T ss_pred             HHHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHH---HhcceeecccCcccceecchhheeeccchhhcccCcc-
Confidence              112222211     12344455567889999999999   5789999999999987          99999875444 


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                       ...+..++|..|.|||++
T Consensus       172 -~~mtpyVvtRyyrapevi  189 (369)
T KOG0665|consen  172 -FMMTPYVVTRYYRAPEVI  189 (369)
T ss_pred             -cccCchhheeeccCchhe
Confidence             234567789999999985

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.35  E-value=1.3e-12  Score=126.21  Aligned_cols=145  Identities=26%  Similarity=0.406  Sum_probs=100.5

Q ss_pred             hhcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeee-ecCCcee--ee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC-SNEDFKA--LD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~-~~~~~~~--l~  749 (827)
                      ..+|...++||.|+||.+|.|. ..+|+.||||+-.....  ..+...|..+.+.++|..-++.+.++ .+.++.+  |+
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMd   91 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMD   91 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccccccceeeee
Confidence            3578889999999999999997 67899999998654432  23567789999999887666554444 3344433  33


Q ss_pred             eecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCC
Q 047196          750 CLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDR  808 (827)
Q Consensus       750 ~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~  808 (827)
                      .+-.        .....+..+.+-.|-|+..-++|+|   .+++|||||||+|.|             |||+||.+.+..
T Consensus        92 LLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~  168 (341)
T KOG1163|consen   92 LLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIR  168 (341)
T ss_pred             ccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH---hhccccccCCccceeeccccccceEEEEeccchhhhcccc
Confidence            3321        1123344455667888888889985   567999999999977             999999876543


Q ss_pred             cc------ccccceecccccc
Q 047196          809 SM------IQTETLVTIGYMA  823 (827)
Q Consensus       809 ~~------~~~~~~gt~~Y~A  823 (827)
                      +.      ....-.||..|.+
T Consensus       169 t~~HIpyre~r~ltGTaRYAS  189 (341)
T KOG1163|consen  169 TRQHIPYREDRNLTGTARYAS  189 (341)
T ss_pred             ccccCccccCCccceeeeehh
Confidence            22      1122337877754

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.35  E-value=2.7e-12  Score=132.62  Aligned_cols=135  Identities=35%  Similarity=0.426  Sum_probs=103.7

Q ss_pred             CceEEEEEEec-CCcEEEEEEEcccchHH-HHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccCC---------
Q 047196          687 SFGSVYKGRLH-DGIEVAIKVFHQNCAMA-LKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTN---------  755 (827)
Q Consensus       687 ~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~~---------  755 (827)
                      +||.||+|+.. +|+.||+|++....... .+.+.+|++.+++++|+|++++++++.......+.......         
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999876 48999999987654333 67899999999999999999999998776544442222111         


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccccceeccccccc
Q 047196          756 -CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP  824 (827)
Q Consensus       756 -~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt~~Y~AP  824 (827)
                       ..+++.....++.++++++.|||   +.+|+|+||+|.||+          |||.+........  .....++..|+||
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~p  155 (244)
T smart00220       81 RGRLSEDEARFYARQILSALEYLH---SNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGL--LTTFVGTPEYMAP  155 (244)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCcCHHHeEECCCCcEEEccccceeeeccccc--cccccCCcCCCCH
Confidence             12566777889999999999996   568999999999988          8988877654321  1224478899999


Q ss_pred             cc
Q 047196          825 GL  826 (827)
Q Consensus       825 E~  826 (827)
                      |+
T Consensus       156 E~  157 (244)
T smart00220      156 EV  157 (244)
T ss_pred             HH
Confidence            96

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.35  E-value=1.8e-12  Score=133.51  Aligned_cols=146  Identities=23%  Similarity=0.343  Sum_probs=102.3

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCC--CC----ceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRH--RN----HVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H--~n----iv~~~~~~~~~~~~  746 (827)
                      +.+|.....+|+|.||+|.++-.+ .+..||||+++.- ....+...-|+++++++.+  |+    .|++.+++.-....
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V-~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghi  166 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV-DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHI  166 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH-HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCce
Confidence            577888899999999999999753 5789999998543 3344566789999999943  22    44454443322222


Q ss_pred             --eee--------eecc-CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------------
Q 047196          747 --ALD--------CLHS-TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------------  796 (827)
Q Consensus       747 --~l~--------~l~~-~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------------  796 (827)
                        +.+        ++.. ............++.|++++++||   |+..++|-||||+|||                   
T Consensus       167 CivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fL---h~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~  243 (415)
T KOG0671|consen  167 CIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFL---HDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFI  243 (415)
T ss_pred             EEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHH---HhcceeecCCChheEEEeccceEEEeccCCcccee
Confidence              111        1111 112344556678999999999999   5778999999999998                   


Q ss_pred             -----------eecccccccCCCccccccceecccccccccC
Q 047196          797 -----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                                 |||-|..-....    ...+.|..|.|||||
T Consensus       244 r~~ks~~I~vIDFGsAtf~~e~h----s~iVsTRHYRAPEVi  281 (415)
T KOG0671|consen  244 RPLKSTAIKVIDFGSATFDHEHH----STIVSTRHYRAPEVI  281 (415)
T ss_pred             ccCCCcceEEEecCCcceeccCc----ceeeeccccCCchhe
Confidence                       888886543332    234579999999986

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.34  E-value=9.8e-12  Score=125.08  Aligned_cols=140  Identities=36%  Similarity=0.577  Sum_probs=104.2

Q ss_pred             EecCCceEEEEEEecC-CcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC------
Q 047196          683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST------  754 (827)
Q Consensus       683 iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~------  754 (827)
                      ||+|++|.||+++..+ |+.++||++...... ..+.+.+|++.+++++|+++++.++++......++...+..      
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999998754 899999998765432 35679999999999999999999999887554433222211      


Q ss_pred             ---C--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCccccccceec
Q 047196          755 ---N--CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLVT  818 (827)
Q Consensus       755 ---~--~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~~~~~~~gt  818 (827)
                         .  ..+++..+..++.+++++++|+|   +.+++|+||+|.||+           |||.+........ ......+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~  156 (215)
T cd00180          81 LLKENEGKLSEDEILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS-LLKTIVGT  156 (215)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc-hhhcccCC
Confidence               1  24667778889999999999995   558999999999998           5666654432211 01123367


Q ss_pred             cccccccc
Q 047196          819 IGYMAPGL  826 (827)
Q Consensus       819 ~~Y~APE~  826 (827)
                      ..|++||+
T Consensus       157 ~~~~~pe~  164 (215)
T cd00180         157 PAYMAPEV  164 (215)
T ss_pred             CCccChhH
Confidence            88999996

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.34  E-value=9.1e-13  Score=144.49  Aligned_cols=143  Identities=26%  Similarity=0.334  Sum_probs=104.4

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceee--e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      ++.|.....+|.|+|+.|-++.. .++...|||++.+...    .-.+|+.++... +|+|+|++.+.|.+....++  +
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~----~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e  396 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRAD----DNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVME  396 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccccc----ccccccchhhhhcCCCcceeecceecCCceeeeeeh
Confidence            45666777799999999999975 4688899999876522    234677666655 69999999999988765544  3


Q ss_pred             eeccCC-------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCccc
Q 047196          750 CLHSTN-------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       750 ~l~~~~-------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~~  811 (827)
                      .+....       ......++..|+.+++.++.|||   .++|||||+||+|||           |||.++....+    
T Consensus       397 ~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH---~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~----  469 (612)
T KOG0603|consen  397 LLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLH---EQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS----  469 (612)
T ss_pred             hccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---hcCeeecCCChhheeecCCCCcEEEEEechhhhCchh----
Confidence            322211       01111344569999999999995   578999999999998           99999887654    


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+-|..|.|||++
T Consensus       470 ~~tp~~t~~y~APEvl  485 (612)
T KOG0603|consen  470 CDTPALTLQYVAPEVL  485 (612)
T ss_pred             hcccchhhcccChhhh
Confidence            1223468899999984

>PRK10345 hypothetical protein; Provisional

Probab=99.34  E-value=8.4e-12  Score=124.93  Aligned_cols=115  Identities=17%  Similarity=0.289  Sum_probs=76.9

Q ss_pred             ccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-----CCCCceEEEeeeecCCc--eeee
Q 047196          677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-----RHRNHVKRISSCSNEDF--KALD  749 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-----~H~niv~~~~~~~~~~~--~~l~  749 (827)
                      ....+.||+|+||.||. .-.++.. +||++........+.+.+|+.+++.+     +||||++++|++.....  ...+
T Consensus         4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             cCCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            45568899999999996 2234444 79988654444556799999999999     57999999999877531  1111


Q ss_pred             eecc--C--CCCCCHH-------HHHHHHHHHHHHH-HHHHhcCCCCeEEccCCCccee
Q 047196          750 CLHS--T--NCSLNIF-------DKLNIMIDVASAL-EYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       750 ~l~~--~--~~~l~~~-------~~~~i~~~ia~~L-~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                      .+..  +  .+.+...       ....++.++..++ +|||   +.+|+||||||+||+
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~~yLh---~~~IvhrDlKp~NIL  137 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLKRYLL---DNRIVTMELKPQNIL  137 (210)
T ss_pred             EEecCCCCcchhHHHHHHcccccHhHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEE
Confidence            1111  1  1122110       1123455666565 7884   678999999999998

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.33  E-value=1e-13  Score=148.79  Aligned_cols=193  Identities=25%  Similarity=0.417  Sum_probs=165.7

Q ss_pred             EEcCCCCCccccCc-cccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCC
Q 047196          103 LNISSLNLQGTIPP-QLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDK  181 (827)
Q Consensus       103 L~L~~~~l~g~~~~-~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~  181 (827)
                      |.|++..+....-. +=-.|+.-...||+.|++. ++|.++..+..|+.|.|.+|.+. .+|..+.++..|.+|+|+.|.
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            44555555432111 1245677778999999998 89999999999999999999986 678889999999999999999


Q ss_pred             CCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccc
Q 047196          182 LSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPH  261 (827)
Q Consensus       182 l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  261 (827)
                      ++ .+|..++.+.  |++|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|.++.|++. .+|+
T Consensus       133 lS-~lp~~lC~lp--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~  206 (722)
T KOG0532|consen  133 LS-HLPDGLCDLP--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE  206 (722)
T ss_pred             hh-cCChhhhcCc--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence            98 7999999865  999999999997 78999999999999999999997 67888999999999999999998 7888


Q ss_pred             cccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCcccc
Q 047196          262 EIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLG  305 (827)
Q Consensus       262 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~  305 (827)
                      ++..|+ |..||+|.|+++ .+|..|.+|+.|++|.|.+|.+..
T Consensus       207 El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  207 ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            888665 899999999998 589999999999999999998863

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.32  E-value=7e-14  Score=150.05  Aligned_cols=171  Identities=29%  Similarity=0.422  Sum_probs=133.4

Q ss_pred             cEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCC
Q 047196          383 ENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGN  462 (827)
Q Consensus       383 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  462 (827)
                      ...|++.|++. ++|..++.+-.|+.+.|..|.+. .+|..+.++..|.+|||+.|+++ .+|..++.++ |+.|-+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            45677777776 67777777777888888888877 67777888888888888888887 6777777776 788888888


Q ss_pred             cccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccc
Q 047196          463 KFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPS  542 (827)
Q Consensus       463 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~  542 (827)
                      +++ .+|..++.+..|..||.+.|++.. +|..++++.+|+.|++..|++.. +|.++..|+ |..||+|+|+++ .||-
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee-ecch
Confidence            886 678888877888888888888874 56677888888888888888874 556666444 677888888888 6888


Q ss_pred             cccCCCCCCEEECCCCccee
Q 047196          543 TIGDLKDLQNISLACNGLEG  562 (827)
Q Consensus       543 ~~~~l~~L~~L~Ls~N~l~g  562 (827)
                      .|.+|+.|++|-|.+|.|..
T Consensus       229 ~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhheeeeeccCCCCC
Confidence            88888888888888888864

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.25  E-value=1.4e-11  Score=133.58  Aligned_cols=147  Identities=29%  Similarity=0.362  Sum_probs=103.5

Q ss_pred             cccccceEecCCceEEEEEEecC--CcEEEEEEEcccchHHHHHHHHHHHHHHhcCC----CCceEEEeee-ecCCceee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRH----RNHVKRISSC-SNEDFKAL  748 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~--g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H----~niv~~~~~~-~~~~~~~l  748 (827)
                      +|...+.||+|+||.||.+....  ...+|+|............+..|+.++..+.+    +++.++++.. ..+.+.++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            78889999999999999998654  35788888755432222267889999998873    4566677666 35544443


Q ss_pred             e--eec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccc
Q 047196          749 D--CLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGR  802 (827)
Q Consensus       749 ~--~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~  802 (827)
                      .  .+-         .....++..+...|+.|+..+|+++   |+.+++||||||+|+.               |||+|+
T Consensus        99 VM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~l---H~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen   99 VMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDL---HSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             EEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHH---HhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            2  111         1124567778889999999999999   5789999999999965               999999


Q ss_pred             --cccCCCc----cc---cccceecccccccc
Q 047196          803 --LLTGDRS----MI---QTETLVTIGYMAPG  825 (827)
Q Consensus       803 --~~~~~~~----~~---~~~~~gt~~Y~APE  825 (827)
                        .+..+..    ..   .....||..|++++
T Consensus       176 ~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~  207 (322)
T KOG1164|consen  176 RFKYVGDSGGNLRPPRPQKGLFRGTLRYASIN  207 (322)
T ss_pred             cccccCCCCcccccCCCCccCCCCccccccHH
Confidence              4322221    11   12234899998875

>smart00090 RIO RIO-like kinase

Probab=99.24  E-value=4.1e-11  Score=123.04  Aligned_cols=126  Identities=16%  Similarity=0.178  Sum_probs=87.0

Q ss_pred             cccccceEecCCceEEEEEE--ecCCcEEEEEEEcccch----------------------H--HHHHHHHHHHHHHhcC
Q 047196          676 KFSKENLIGVGSFGSVYKGR--LHDGIEVAIKVFHQNCA----------------------M--ALKSFEAECEVMKNIR  729 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~--~~~g~~vAvK~l~~~~~----------------------~--~~~~~~~Ei~~l~~l~  729 (827)
                      .|...+.||+|+||.||+|.  ..+|+.||||+++....                      .  ....+.+|+++++++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            36667889999999999998  46899999999864311                      0  1134678999999998


Q ss_pred             CCC--ceEEEeeeecCCceeeeeeccCC--------CCCCHHHHHHHHHHHHHHHHHHHhcCCCC-eEEccCCCccee--
Q 047196          730 HRN--HVKRISSCSNEDFKALDCLHSTN--------CSLNIFDKLNIMIDVASALEYLHFSHSTP-VIHCDLKPKNVF--  796 (827)
Q Consensus       730 H~n--iv~~~~~~~~~~~~~l~~l~~~~--------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~-iiHrDlK~~NIl--  796 (827)
                      +..  +.+.+++  ...+.+++++....        ......+...++.++++++.++|   ..+ |+|||+||+||+  
T Consensus       109 ~~~i~~p~~~~~--~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dikp~NIli~  183 (237)
T smart00090      109 EAGVPVPKPIAW--RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLY---KEGELVHGDLSEYNILVH  183 (237)
T ss_pred             hcCCCCCeeeEe--cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCChhhEEEE
Confidence            643  2333332  23344444443311        12233345678999999999995   667 999999999987  


Q ss_pred             -------eecccccccC
Q 047196          797 -------DFGIGRLLTG  806 (827)
Q Consensus       797 -------DFGla~~~~~  806 (827)
                             |||.|+....
T Consensus       184 ~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      184 DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             CCCEEEEEChhhhccCC
Confidence                   8998876543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.24  E-value=1.8e-11  Score=123.60  Aligned_cols=144  Identities=22%  Similarity=0.345  Sum_probs=97.8

Q ss_pred             hcccccceEecCCceEEEEEE-ecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeee---ecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC---SNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~---~~~~~~~l~~  750 (827)
                      -.|...++||+|+||+.+.|+ +-++++||||.-+...  ...++..|.+..+.+.+.--|+-+-|+   ...+..+++.
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            368889999999999999997 5678999999754332  123466777777777654444433333   2223333333


Q ss_pred             ecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccccccCC
Q 047196          751 LHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLLTGD  807 (827)
Q Consensus       751 l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~~~~~~  807 (827)
                      +-.        .+..++..+...||.|+..-++|+|   ++..|.|||||+|.|               |||+||.+.+.
T Consensus       106 LGPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH---~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp  182 (449)
T KOG1165|consen  106 LGPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVH---EKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDP  182 (449)
T ss_pred             hCcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHH---hcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCc
Confidence            221        2234555666789999999999995   566999999999976               99999998654


Q ss_pred             Cccc------cccceecccccc
Q 047196          808 RSMI------QTETLVTIGYMA  823 (827)
Q Consensus       808 ~~~~------~~~~~gt~~Y~A  823 (827)
                      ....      ..+--||..||+
T Consensus       183 ~TkqHIPYrE~KSLsGTARYMS  204 (449)
T KOG1165|consen  183 KTKQHIPYREHKSLSGTARYMS  204 (449)
T ss_pred             cccccCccccccccccceeeeE
Confidence            3321      111238999996

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.23  E-value=3.2e-11  Score=139.75  Aligned_cols=128  Identities=19%  Similarity=0.241  Sum_probs=91.3

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEE-Eccc-c------hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKV-FHQN-C------AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~-l~~~-~------~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      ...|...+.||+|+||.||+|++.+.. +++|+ .... .      ....+++.+|++++++++|++++....++..+..
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            344566789999999999999876543 34443 2211 1      1123578999999999999999887777666444


Q ss_pred             eeeeeeccCCCCCCH--HHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eeccccccc
Q 047196          746 KALDCLHSTNCSLNI--FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLT  805 (827)
Q Consensus       746 ~~l~~l~~~~~~l~~--~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~  805 (827)
                      .++...+.....+..  .....++.++++++.|+|   +.+|+|||+||+||+         |||+++...
T Consensus       411 ~~lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl~~~~~~liDFGla~~~~  478 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIVRDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             CEEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHH---hCCCccCCCChHHEEEECCcEEEEeCcccccCC
Confidence            444333333333332  235678999999999995   678999999999998         999998753

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.20  E-value=7.9e-11  Score=118.21  Aligned_cols=126  Identities=20%  Similarity=0.205  Sum_probs=86.9

Q ss_pred             cccccceEecCCceEEEEEEecCCcEEEEEEEcccch----------------------HHHHHHHHHHHHHHhcCCCC-
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA----------------------MALKSFEAECEVMKNIRHRN-  732 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~----------------------~~~~~~~~Ei~~l~~l~H~n-  732 (827)
                      -|...+.||+|+||.||+|..++|+.||||+++....                      .....+.+|+.++.++.|++ 
T Consensus        16 ~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            3666789999999999999988899999998754320                      01123678999999998874 


Q ss_pred             -ceEEEeeeecCCceeeeeeccCC-CCCCH-HHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eec
Q 047196          733 -HVKRISSCSNEDFKALDCLHSTN-CSLNI-FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFG  799 (827)
Q Consensus       733 -iv~~~~~~~~~~~~~l~~l~~~~-~~l~~-~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFG  799 (827)
                       +.+.++.  ......++++.... ..... .....++.++++++.++|   +.+|+||||||+||+          |||
T Consensus        96 ~v~~~~~~--~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh---~~gi~H~Dl~p~Nill~~~~~~~liDfg  170 (198)
T cd05144          96 PVPKPIDW--NRHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAY---KHGIIHGDLSEFNILVDDDEKIYIIDWP  170 (198)
T ss_pred             CCCceeec--CCceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHH---HCCCCcCCCCcccEEEcCCCcEEEEECC
Confidence             4444432  22333444443321 01111 234568889999999986   578999999999998          999


Q ss_pred             ccccccC
Q 047196          800 IGRLLTG  806 (827)
Q Consensus       800 la~~~~~  806 (827)
                      ++.....
T Consensus       171 ~~~~~~~  177 (198)
T cd05144         171 QMVSTDH  177 (198)
T ss_pred             ccccCCC
Confidence            9865543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=1.8e-11  Score=136.88  Aligned_cols=179  Identities=38%  Similarity=0.576  Sum_probs=122.2

Q ss_pred             cccEEEccCCcCccccCccccCCC-CCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEec
Q 047196          381 SLENIYISNCNIGGSIPQLISNLS-NLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  459 (827)
                      .++.|++.+|+++ .+|.....+. +|+.|++++|++. .+|..++.++.|+.|++++|+++ .+|...+..+.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            4667777777776 4555556563 7788888888777 45556677778888888888877 55555556777788888


Q ss_pred             CCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeec
Q 047196          460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGD  539 (827)
Q Consensus       460 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~  539 (827)
                      ++|+++ .+|.....+..|+.+++++|.+. ..+..+.+++++..+.+++|++... +..++.+..++.|++++|+++ .
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~-~  269 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS-S  269 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc-c
Confidence            888877 56665555566777788877533 2455566777777777777777542 555666777777777777777 3


Q ss_pred             ccccccCCCCCCEEECCCCcceeecCCC
Q 047196          540 IPSTIGDLKDLQNISLACNGLEGLIPES  567 (827)
Q Consensus       540 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  567 (827)
                      ++. ++.+.+++.|+++.|.++..+|..
T Consensus       270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         270 ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccc-ccccCccCEEeccCccccccchhh
Confidence            333 677777777777777776665543

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.19  E-value=7.7e-11  Score=118.40  Aligned_cols=117  Identities=19%  Similarity=0.324  Sum_probs=82.4

Q ss_pred             eEecCCceEEEEEEecCCcEEEEEEEcccc--------hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ceeeeee
Q 047196          682 LIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--------AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKALDCL  751 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~l~~l  751 (827)
                      .||+|+||.||+|.+ +|..|+||+.....        ....+++.+|++++++++|+++.....++...+  ...++++
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999985 56889999864321        112356889999999999887554444443333  3344444


Q ss_pred             ccCCCCCCHHHHH---HHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccc
Q 047196          752 HSTNCSLNIFDKL---NIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLL  804 (827)
Q Consensus       752 ~~~~~~l~~~~~~---~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~  804 (827)
                      .  +..+......   .++.++++++.++   |+.+++|||+||.||+         |||+++..
T Consensus        80 ~--g~~l~~~~~~~~~~~~~~i~~~l~~l---H~~gi~H~Dl~~~Nil~~~~~~~liDfg~a~~~  139 (199)
T TIGR03724        80 E--GKPLKDVIEEGNDELLREIGRLVGKL---HKAGIVHGDLTTSNIIVRDDKLYLIDFGLGKYS  139 (199)
T ss_pred             C--CccHHHHHhhcHHHHHHHHHHHHHHH---HHCCeecCCCCcceEEEECCcEEEEECCCCcCC
Confidence            3  2222211111   7899999999999   4789999999999987         99988764

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.17  E-value=3.8e-11  Score=127.64  Aligned_cols=147  Identities=27%  Similarity=0.409  Sum_probs=101.2

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCC------CceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHR------NHVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~------niv~~~~~~~~~~~~  746 (827)
                      ..+|......|+|-|+.|.+|... .|..||||++..+..+ .+.=.+|+++|+++...      +.++++-.+......
T Consensus       431 D~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M-~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHL  509 (752)
T KOG0670|consen  431 DSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVM-HKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHL  509 (752)
T ss_pred             cceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHH-hhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhccee
Confidence            356878888999999999999864 5889999999876443 34456788888887521      233333322222222


Q ss_pred             eee--eec----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eeccccc
Q 047196          747 ALD--CLH----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRL  803 (827)
Q Consensus       747 ~l~--~l~----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~  803 (827)
                      .|.  .++          ..+..+.......++.|+.-||..|   -.-+|+|.||||.|||           |||-|..
T Consensus       510 ClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklL---K~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~  586 (752)
T KOG0670|consen  510 CLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLL---KKCGVLHADIKPDNILVNESKNILKLCDFGSASF  586 (752)
T ss_pred             EEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHH---HhcCeeecccCccceEeccCcceeeeccCccccc
Confidence            121  111          1233455556667888998899988   4668999999999998           9999977


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....   .+..+.+..|.|||+|
T Consensus       587 ~~ene---itPYLVSRFYRaPEIi  607 (752)
T KOG0670|consen  587 ASENE---ITPYLVSRFYRAPEII  607 (752)
T ss_pred             ccccc---ccHHHHHHhccCccee
Confidence            65433   2445678899999986

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.16  E-value=1e-10  Score=118.65  Aligned_cols=118  Identities=21%  Similarity=0.326  Sum_probs=85.1

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEEcccc---h-----HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc--eeeee
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC---A-----MALKSFEAECEVMKNIRHRNHVKRISSCSNEDF--KALDC  750 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~---~-----~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~--~~l~~  750 (827)
                      +.||+|++|.||+|+. .|..|+||+.....   .     ....++.+|++++..++|+++.....++...+.  ..+++
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5799999999999987 56789999864321   1     123468899999999999988766666544333  33344


Q ss_pred             eccCCCCCCH------HHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccc
Q 047196          751 LHSTNCSLNI------FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLL  804 (827)
Q Consensus       751 l~~~~~~l~~------~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~  804 (827)
                      +..  ..+..      ..+..++.++++++.++|   +.+++|||++|+||+         |||.++..
T Consensus        81 ~~G--~~L~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~Dl~p~Nil~~~~~~~liDf~~a~~~  144 (211)
T PRK14879         81 IEG--EPLKDLINSNGMEELELSREIGRLVGKLH---SAGIIHGDLTTSNMILSGGKIYLIDFGLAEFS  144 (211)
T ss_pred             eCC--cCHHHHHHhccHHHHHHHHHHHHHHHHHH---hCCcccCCCCcccEEEECCCEEEEECCcccCC
Confidence            332  22111      145688999999999995   678999999999987         99988753

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.16  E-value=1.4e-10  Score=110.54  Aligned_cols=121  Identities=18%  Similarity=0.208  Sum_probs=92.0

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCC--CceEEEeeeecCCcee--eeeeccCC
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHR--NHVKRISSCSNEDFKA--LDCLHSTN  755 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~--niv~~~~~~~~~~~~~--l~~l~~~~  755 (827)
                      .+.+|+|.++.||+++..+ ..++||.......  ...+.+|+++++.++|.  .+.+++++....+..+  ++++....
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            4679999999999999755 7899999865433  45789999999999874  7888877766543333  34433221


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          756 -CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       756 -~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                       ..++......++.+++++++++|..+.++++|+|+||+||+          |||.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          80 LDEVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence             12245667788999999999999877789999999999988          8887764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.15  E-value=1.1e-10  Score=117.13  Aligned_cols=126  Identities=15%  Similarity=0.109  Sum_probs=89.2

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccch---HHHHH------HHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA---MALKS------FEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~---~~~~~------~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      ..+|...+++|.|+||.||.... ++..+|||++.....   ...+.      |++|++.+.+++|+++.....+.....
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            46788999999999999999765 567899999964322   22222      689999999999999999887754332


Q ss_pred             ----------ceeeeeeccCCCCCCHHH--HHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eeccccc
Q 047196          745 ----------FKALDCLHSTNCSLNIFD--KLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRL  803 (827)
Q Consensus       745 ----------~~~l~~l~~~~~~l~~~~--~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~  803 (827)
                                ...|+++...  .+....  ......++++++..+   |..+|+|||+||+|++         |||..+.
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~--tL~~~~~~~~~~~~~i~~~l~~l---H~~gi~H~Dikp~Nili~~~gi~liDfg~~~~  183 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGV--ELNDMPEISEDVKAKIKASIESL---HQHGMVSGDPHKGNFIVSKNGLRIIDLSGKRC  183 (232)
T ss_pred             cccccccCCeEEEEEEECCc--cHHHhhhccHHHHHHHHHHHHHH---HHcCCccCCCChHHEEEeCCCEEEEECCCccc
Confidence                      2234444432  221110  123456788888888   5789999999999987         8887765


Q ss_pred             cc
Q 047196          804 LT  805 (827)
Q Consensus       804 ~~  805 (827)
                      ..
T Consensus       184 ~~  185 (232)
T PRK10359        184 TA  185 (232)
T ss_pred             cc
Confidence            53

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=4.5e-11  Score=133.75  Aligned_cols=198  Identities=34%  Similarity=0.518  Sum_probs=162.7

Q ss_pred             EEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCC-CCcEEECCCCCCCCCCCccccccccccEEecCCC
Q 047196          384 NIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQ-KLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGN  462 (827)
Q Consensus       384 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  462 (827)
                      .++++.|.+...+ ..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            5777777775333 33445588999999999999 5666777774 9999999999998 67778899999999999999


Q ss_pred             cccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccc
Q 047196          463 KFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPS  542 (827)
Q Consensus       463 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~  542 (827)
                      +++ .+|...+.++.|+.|++++|+++. +|........|+++++++|.+. .++..+.++..+..+.+++|++. .+|.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            998 677777788999999999999986 5555556677999999999633 35667888999999999999998 4478


Q ss_pred             cccCCCCCCEEECCCCcceeecC-CCCcCCceEeCcCCcCeecCCCC
Q 047196          543 TIGDLKDLQNISLACNGLEGLIP-ESFGYLTELNLSFNKLEGEIPRG  588 (827)
Q Consensus       543 ~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~L~~L~ls~N~l~g~ip~~  588 (827)
                      .++.+++++.|++++|+++...+ ..+..++.|++++|.++...|..
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhccccccceeccccccccccccccccCccCEEeccCccccccchhh
Confidence            89999999999999999987654 23458999999999999877764

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.14  E-value=3.5e-11  Score=118.30  Aligned_cols=143  Identities=20%  Similarity=0.348  Sum_probs=97.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeee-ecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSC-SNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~-~~~~~~~l~~l  751 (827)
                      +.|...+.+|+|.||++-.++.+ +.+.+++|-++... ...++|.+|..---.+ .|.|||.-++.. ...++.+....
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~-tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ-TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch-hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            45777789999999999999865 56789999886542 3457899988643344 378888654432 23343333333


Q ss_pred             ccCC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCcc
Q 047196          752 HSTN---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRSM  810 (827)
Q Consensus       752 ~~~~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~~  810 (827)
                      +.+.         ..+....-..|+.|++.|+.|+   |++.+||||||.+|||            |||..+.....   
T Consensus       103 ~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fM---HsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~t---  176 (378)
T KOG1345|consen  103 FAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFM---HSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTT---  176 (378)
T ss_pred             cCccchhhhhcCcccccHHHHHHHHHHHHHHHHHh---hccchhhcccccceEEEecCCccEEEeeecccccccCce---
Confidence            3221         2344455668999999999999   6899999999999999            88876543211   


Q ss_pred             ccccce-eccccccccc
Q 047196          811 IQTETL-VTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~-gt~~Y~APE~  826 (827)
                        ...+ .+..|-|||+
T Consensus       177 --V~~~~~~~~y~~pe~  191 (378)
T KOG1345|consen  177 --VKYLEYVNNYHAPEL  191 (378)
T ss_pred             --ehhhhhhcccCCcHH
Confidence              1111 3567888885

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.13  E-value=2.6e-10  Score=112.03  Aligned_cols=120  Identities=15%  Similarity=0.116  Sum_probs=83.8

Q ss_pred             cccceEecCCceEEEEEEecCCcEEEEEEEcccch----HHHHHHHHHHHHHHhcCC-CCceEEEeeeecCCceeeeeec
Q 047196          678 SKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA----MALKSFEAECEVMKNIRH-RNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~----~~~~~~~~Ei~~l~~l~H-~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .....+++|+||+||.+.. .++.++.+.+.....    .....|.+|+++|+++.| +++.+++++  ...+..++++.
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~--~~~~lvmeyI~   81 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW--DGRHLDRSYLA   81 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE--cCEEEEEeeec
Confidence            4567899999999997765 577888887754422    112358899999999965 668887775  22333444443


Q ss_pred             cCCCCCCH---HHHHHHHHHHHHHHHHHHhcCCCCeEEccC-CCccee----------eeccccccc
Q 047196          753 STNCSLNI---FDKLNIMIDVASALEYLHFSHSTPVIHCDL-KPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       753 ~~~~~l~~---~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDl-K~~NIl----------DFGla~~~~  805 (827)
                      ..  .+..   .....+..+++++++++   |+.+|+|||| ||+||+          |||+|+...
T Consensus        82 G~--~L~~~~~~~~~~~~~qi~~~L~~l---H~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~  143 (218)
T PRK12274         82 GA--AMYQRPPRGDLAYFRAARRLLQQL---HRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN  143 (218)
T ss_pred             Cc--cHHhhhhhhhHHHHHHHHHHHHHH---HHCcCccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence            22  1110   12245677888899888   5778999999 799988          999998544

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.11  E-value=3.5e-10  Score=122.30  Aligned_cols=146  Identities=34%  Similarity=0.531  Sum_probs=108.4

Q ss_pred             ccccceEecCCceEEEEEEecCCcEEEEEEEcccchH---HHHHHHHHHHHHHhcCCC-CceEEEeeeecCCc--eeeee
Q 047196          677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAM---ALKSFEAECEVMKNIRHR-NHVKRISSCSNEDF--KALDC  750 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~---~~~~~~~Ei~~l~~l~H~-niv~~~~~~~~~~~--~~l~~  750 (827)
                      |...+.+|.|+||.||++...  ..+|+|.+......   ....|.+|+.+++.+.|+ +++++.........  ..+++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            455678999999999999876  78999998654322   467899999999999998 69999988855543  22222


Q ss_pred             eccC--------C---CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCC
Q 047196          751 LHST--------N---CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDR  808 (827)
Q Consensus       751 l~~~--------~---~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~  808 (827)
                      ....        .   ..........+..+++.++.|+|   +.+++|||+||+||+           |||.++......
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~  156 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPG  156 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCC
Confidence            2211        1   14555667789999999999885   667999999999998           999998665433


Q ss_pred             cc-----ccccceecccccccccC
Q 047196          809 SM-----IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~-----~~~~~~gt~~Y~APE~l  827 (827)
                      ..     ......||..|+|||.+
T Consensus       157 ~~~~~~~~~~~~~~t~~~~~pe~~  180 (384)
T COG0515         157 STSSIPALPSTSVGTPGYMAPEVL  180 (384)
T ss_pred             ccccccccccccccccccCCHHHh
Confidence            21     12345699999999963

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.08  E-value=2.7e-10  Score=120.79  Aligned_cols=119  Identities=22%  Similarity=0.293  Sum_probs=90.0

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-----CC---CceEEEeeeecCC-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-----HR---NHVKRISSCSNED-  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-----H~---niv~~~~~~~~~~-  744 (827)
                      ++|...+++|-|.|++||.|-. .+.+.||+|+.+. ..+..+....||++|++++     |+   .||++++.+.... 
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKS-AqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp  156 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKS-AQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP  156 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEeh-hhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence            5788889999999999999975 4568899999754 3445567789999999996     22   4999998875532 


Q ss_pred             ---ceeeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          745 ---FKALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       745 ---~~~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                         ...|.+..-+           ...+......+|+.||..||.|||..|  +|||-||||+|||
T Consensus       157 NG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvL  220 (590)
T KOG1290|consen  157 NGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVL  220 (590)
T ss_pred             CCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceee
Confidence               2222222111           223455667789999999999999655  7999999999999

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.04  E-value=6.5e-10  Score=110.44  Aligned_cols=123  Identities=20%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccchH--HHH----------------------HHHHHHHHHHhcCCCC--c
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAM--ALK----------------------SFEAECEVMKNIRHRN--H  733 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~--~~~----------------------~~~~Ei~~l~~l~H~n--i  733 (827)
                      .+.||+|+||.||+|...+|+.||||++......  ...                      ....|.+.+.++++..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            3579999999999999878999999998643211  111                      1145666777765543  2


Q ss_pred             eEEEeeeecCCceeeeeeccCC---CCCC---H-HHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------e
Q 047196          734 VKRISSCSNEDFKALDCLHSTN---CSLN---I-FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------D  797 (827)
Q Consensus       734 v~~~~~~~~~~~~~l~~l~~~~---~~l~---~-~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------D  797 (827)
                      .+.++.  ......++++....   ..+.   . .+...++.+++.++.++|.  +++|+|||+||+||+         |
T Consensus        82 ~~~~~~--~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~--~~~ivH~Dl~p~Nili~~~~~~liD  157 (187)
T cd05119          82 PKPIDL--NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYR--EAGLVHGDLSEYNILVDDGKVYIID  157 (187)
T ss_pred             CceEec--CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhh--ccCcCcCCCChhhEEEECCcEEEEE
Confidence            233322  22333444444311   1111   1 3456788889999999862  278999999999987         8


Q ss_pred             ecccccccC
Q 047196          798 FGIGRLLTG  806 (827)
Q Consensus       798 FGla~~~~~  806 (827)
                      ||.|.....
T Consensus       158 fg~a~~~~~  166 (187)
T cd05119         158 VPQAVEIDH  166 (187)
T ss_pred             CcccccccC
Confidence            988865543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.92  E-value=5.9e-10  Score=115.00  Aligned_cols=157  Identities=20%  Similarity=0.259  Sum_probs=107.6

Q ss_pred             hHHHHHhhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeee
Q 047196          668 QDLFRATEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSC  740 (827)
Q Consensus       668 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~  740 (827)
                      +++....++++...++-+|.||.||+|.+.      +.+.|-||.+++.. +.+...+..|.-.+..+.|||+.+..+.+
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            344445566777788999999999999654      34557778776543 44567899999999999999999999998


Q ss_pred             ecCCceeeeee-cc----------------C--CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----
Q 047196          741 SNEDFKALDCL-HS----------------T--NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----  796 (827)
Q Consensus       741 ~~~~~~~l~~l-~~----------------~--~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----  796 (827)
                      .++...-+..+ +.                .  ...+...+...+|.|+|.|++||   |+++|||.||.+.|.+     
T Consensus       357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hl---h~~~ViHkDiAaRNCvIdd~L  433 (563)
T KOG1024|consen  357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHL---HNHGVIHKDIAARNCVIDDQL  433 (563)
T ss_pred             eeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHH---HhcCcccchhhhhcceehhhe
Confidence            76432211111 10                1  11234455677899999999999   5788999999999966     


Q ss_pred             -----eecccccccCCCccccc-cceecccccccccC
Q 047196          797 -----DFGIGRLLTGDRSMIQT-ETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -----DFGla~~~~~~~~~~~~-~~~gt~~Y~APE~l  827 (827)
                           |=.++|-+...+..... ..--...||+||-+
T Consensus       434 qVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal  470 (563)
T KOG1024|consen  434 QVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEAL  470 (563)
T ss_pred             eEEeccchhccccCcccccccCCCCCCcccccCHHHH
Confidence                 66666655443332111 11125689999953

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2.5e-10  Score=119.67  Aligned_cols=86  Identities=24%  Similarity=0.299  Sum_probs=42.9

Q ss_pred             cccccEEEeeccccccc-CCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccc--ccccCcCCCc
Q 047196          194 LHYLKVLFLAKNMFHGQ-IPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIP--HEIGYLPNLE  270 (827)
Q Consensus       194 ~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~  270 (827)
                      ++.|+.|.|+.|.++-. +-.....+++|+.|+|..|..-+........+..|+.|||++|++- ..+  ...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence            33555555555555421 1112234556666666666422222233344555666666666654 222  2345566666


Q ss_pred             EEEeecccCc
Q 047196          271 NLVLGFNNLV  280 (827)
Q Consensus       271 ~L~Ls~N~l~  280 (827)
                      .|+++.+.+.
T Consensus       275 ~Lnls~tgi~  284 (505)
T KOG3207|consen  275 QLNLSSTGIA  284 (505)
T ss_pred             hhhccccCcc
Confidence            6666666554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.87  E-value=2.1e-09  Score=77.95  Aligned_cols=41  Identities=39%  Similarity=0.827  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCcCCCCCCCC-CCCCcccceecC
Q 047196           54 TTDQQALLALKAHISYDPTNLLAQNSTSN-TSVCNWIGITCN   94 (827)
Q Consensus        54 ~~~~~aLl~~k~~~~~~~~~~l~~w~~~~-~~~C~W~gv~C~   94 (827)
                      ++|++||++||+++..+|.+.+.+|.... .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            67999999999999667778899998543 799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=9.4e-10  Score=109.70  Aligned_cols=130  Identities=28%  Similarity=0.413  Sum_probs=61.7

Q ss_pred             CCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCcccc
Q 047196          404 SNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDL  483 (827)
Q Consensus       404 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  483 (827)
                      ..|+.+|||+|.|+ .+..+..-+++++.|++|+|.+.. + ..+..+++|+.||||+|.++ .+-.|-..+.+.+.|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            34444444444444 233334444444555555554431 1 12444455555555555554 23333333444455555


Q ss_pred             CCCcccccCCccccccccccccCCCCCCCCCC-CcccccccccCceEEcccceeeec
Q 047196          484 GSNRLTSVLPSTFWNLKDILFFDLSSNSLDGP-LSLDIGNLRVVIGINLSRNNFSGD  539 (827)
Q Consensus       484 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~  539 (827)
                      +.|.+...  ..+..+-+|..||+++|++... --..+|+++.|+.+.|.+|.+.+.
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            55544321  1233444555555555555421 123456666777777777777643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.84  E-value=3.4e-10  Score=115.75  Aligned_cols=235  Identities=21%  Similarity=0.283  Sum_probs=124.6

Q ss_pred             CcEEEEEcCCCCCccc----cCccccCCCCCCEEECCCC---CCCccCChhh-------hhccccceEEecCCCCCCccc
Q 047196           98 HRVTALNISSLNLQGT----IPPQLGNLSSLTTLNLSHN---KLSGDIPPSI-------FTMHKLKFLDFSDNQLSGSLS  163 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~----~~~~l~~L~~L~~L~Ls~N---~l~g~~p~~~-------~~l~~L~~LdLs~N~l~g~~p  163 (827)
                      ..++.|+|++|.+.-.    +.+.+.+.++|+.-++|+-   ++...+|+.+       ...++|++||||+|.|.-.-+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            4688999999887532    4456777888888888863   2233456544       345689999999998864333


Q ss_pred             c----ccCCCCCCcEEEcCCCCCCCCcchhHhh------------ccccccEEEeeccccccc----CCccCCCCCCCcE
Q 047196          164 S----VTFNLSSVLDIRLDSDKLSGELPVNICN------------YLHYLKVLFLAKNMFHGQ----IPLALSKCKRLQL  223 (827)
Q Consensus       164 ~----~~~~l~~L~~L~L~~n~l~g~ip~~~~~------------~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~  223 (827)
                      .    .+....+|++|.|.+|.+.-.--..+..            ..+.|+++..++|++...    +...|...+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            2    2445677777777777664110011111            123555555555555321    1122344455555


Q ss_pred             EEccCCCCcc----cCCCcCcCCccccEEEccccccccc----ccccccCcCCCcEEEeecccCcccCchhhhcCCCccE
Q 047196          224 LNLGFKKLSG----AIPKEISNLTILRKISLRNNKLRGE----IPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKK  295 (827)
Q Consensus       224 L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  295 (827)
                      +.+..|.+..    .+...+..+++|++|||++|.|+..    +...+..+++|++|++++|.+...-..++.       
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~-------  262 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV-------  262 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH-------
Confidence            5555555421    0112234455555555555555422    222333444555555555544322221111       


Q ss_pred             EEecCCccccccChhhhcCCCCccEEeCcCCccccc----cCccccCCCCCcEEEcCCCcc
Q 047196          296 IYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGT----IPSFITNASKLVYLDMGTNSF  352 (827)
Q Consensus       296 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l  352 (827)
                                   ..+....|+|++|.+.+|.++..    +-..+...+.|..|+|++|.+
T Consensus       263 -------------~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  263 -------------DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             -------------HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                         11122356777777777776532    222344566677777777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=1.1e-09  Score=109.14  Aligned_cols=90  Identities=33%  Similarity=0.316  Sum_probs=46.0

Q ss_pred             ccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCC-ccccccccc
Q 047196          424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP-STFWNLKDI  502 (827)
Q Consensus       424 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L  502 (827)
                      +..+++|+.||||+|.++ .+-.+-..+-+.+.|.|+.|.+.  --+.++.+.+|..||+++|+|..... ..+++++.|
T Consensus       325 La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL  401 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL  401 (490)
T ss_pred             hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence            333444444444444443 22333334445555555555543  11234455566666666666643221 345666777


Q ss_pred             cccCCCCCCCCCCC
Q 047196          503 LFFDLSSNSLDGPL  516 (827)
Q Consensus       503 ~~LdLs~N~l~g~~  516 (827)
                      +.+.|.+|.+.+..
T Consensus       402 E~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  402 ETLRLTGNPLAGSV  415 (490)
T ss_pred             HHHhhcCCCccccc
Confidence            77777777776543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.5e-09  Score=113.91  Aligned_cols=182  Identities=23%  Similarity=0.207  Sum_probs=126.0

Q ss_pred             cEEEEEcCCCCCccccC-ccccCCCCCCEEECCCCCCCccCC--hhhhhccccceEEecCCCCCCccccc-cCCCCCCcE
Q 047196           99 RVTALNISSLNLQGTIP-PQLGNLSSLTTLNLSHNKLSGDIP--PSIFTMHKLKFLDFSDNQLSGSLSSV-TFNLSSVLD  174 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~-~~l~~L~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~LdLs~N~l~g~~p~~-~~~l~~L~~  174 (827)
                      .++.+.|.+....-.-. .....+++++.||||+|-|....|  .-...|++|+.|+||.|.+.-...+. -..+++|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            34444555444331111 356788999999999998875433  33457999999999999987544433 336788999


Q ss_pred             EEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccC-CCcCcCCccccEEEcccc
Q 047196          175 IRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAI-PKEISNLTILRKISLRNN  253 (827)
Q Consensus       175 L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N  253 (827)
                      |.|+++.++-.--..+....++|+.|+|..|..-+........+..|+.|||++|++-... -...+.++.|+.|+++.+
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            9999998873222233344569999999999644444445567789999999999885321 134678899999999999


Q ss_pred             ccccc-cccc-----ccCcCCCcEEEeecccCc
Q 047196          254 KLRGE-IPHE-----IGYLPNLENLVLGFNNLV  280 (827)
Q Consensus       254 ~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~  280 (827)
                      .+... +|+.     ...+++|++|+++.|++.
T Consensus       282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             CcchhcCCCccchhhhcccccceeeecccCccc
Confidence            88643 2332     245788899999888875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.79  E-value=3.4e-09  Score=102.07  Aligned_cols=128  Identities=27%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             ccCCCCCCEEECCCCCCCccCChhhh-hccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhcccc
Q 047196          118 LGNLSSLTTLNLSHNKLSGDIPPSIF-TMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHY  196 (827)
Q Consensus       118 l~~L~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~  196 (827)
                      +.+...++.|+|.+|.|+.+  +.++ .+.+|+.||||+|.++...  .+..+..|++|+++.|+++ .++..+...+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            34444566666666666532  2344 4566666677766665321  1223333333333333333 233222222334


Q ss_pred             ccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccC-CCcCcCCccccEEEcccccccccc---cccccCcCCCcEE
Q 047196          197 LKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAI-PKEISNLTILRKISLRNNKLRGEI---PHEIGYLPNLENL  272 (827)
Q Consensus       197 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L  272 (827)
                      |++|+|++|++.                        ..- -..++.+++|++|+|.+|.++..-   ...+..+|+|+.|
T Consensus        90 L~~L~L~~N~I~------------------------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L  145 (175)
T PF14580_consen   90 LQELYLSNNKIS------------------------DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL  145 (175)
T ss_dssp             --EEE-TTS---------------------------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred             CCEEECcCCcCC------------------------ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence            444444444443                        211 123455666777777777665321   1235567778777


Q ss_pred             Ee
Q 047196          273 VL  274 (827)
Q Consensus       273 ~L  274 (827)
                      |-
T Consensus       146 D~  147 (175)
T PF14580_consen  146 DG  147 (175)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=8.4e-09  Score=123.52  Aligned_cols=92  Identities=25%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             CcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccccccc
Q 047196          185 ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIG  264 (827)
Q Consensus       185 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  264 (827)
                      .++..++..++.|++|||++|.=-+.+|..+++|-+|++|+++...++ .+|..++++..|.+|++..+.-...+|....
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~  639 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILL  639 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhh
Confidence            355555555666666666666555566666666777777777766666 5666677777777777766655444555556


Q ss_pred             CcCCCcEEEeecc
Q 047196          265 YLPNLENLVLGFN  277 (827)
Q Consensus       265 ~l~~L~~L~Ls~N  277 (827)
                      .+++|++|.+...
T Consensus       640 ~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  640 ELQSLRVLRLPRS  652 (889)
T ss_pred             hcccccEEEeecc
Confidence            6677777766544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.75  E-value=3e-09  Score=129.63  Aligned_cols=39  Identities=13%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          755 NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       755 ~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                      ...+++.+...++.||++||+|||   +++|+||||||+|||
T Consensus        74 ~~~~~~~~~~~i~~qi~~al~~lH---~~gIvHrDlKP~NiL  112 (793)
T PLN00181         74 DRSVDAFECFHVFRQIVEIVNAAH---SQGIVVHNVRPSCFV  112 (793)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHH---hCCeeeccCCchhEE
Confidence            345788889999999999999995   678999999999998

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.75  E-value=7.2e-09  Score=99.84  Aligned_cols=103  Identities=22%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             cccEEEeecccccccCCccCC-CCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccc-cCcCCCcEEE
Q 047196          196 YLKVLFLAKNMFHGQIPLALS-KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLV  273 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~  273 (827)
                      +++.|+|++|.++..  +.++ .+.+|+.|+|++|.++..  +.+..++.|++|++++|+|+. +++.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            567777777777632  2444 466777777777777643  245667777777777777763 33333 3467777777


Q ss_pred             eecccCcccCc-hhhhcCCCccEEEecCCcc
Q 047196          274 LGFNNLVGVVP-AAIFNMSTVKKIYLLDNSL  303 (827)
Q Consensus       274 Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~l  303 (827)
                      |++|+|...-- ..+..+++|+.|++.+|.+
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            77777654211 2233344444444444443

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.73  E-value=6.6e-08  Score=99.58  Aligned_cols=121  Identities=15%  Similarity=0.258  Sum_probs=80.3

Q ss_pred             cceEe-cCCceEEEEEEecCCcEEEEEEEcccc-------------hHHHHHHHHHHHHHHhcCCCCc--eEEEeeeecC
Q 047196          680 ENLIG-VGSFGSVYKGRLHDGIEVAIKVFHQNC-------------AMALKSFEAECEVMKNIRHRNH--VKRISSCSNE  743 (827)
Q Consensus       680 ~~~iG-~G~fg~Vy~~~~~~g~~vAvK~l~~~~-------------~~~~~~~~~Ei~~l~~l~H~ni--v~~~~~~~~~  743 (827)
                      ..++| .|+.|+||+.+.. +..++||.+....             .....++.+|++++.+++|+++  ++.++++...
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            46788 8999999999875 6789999874321             1123568899999999999885  5666654332


Q ss_pred             C-c-----eeeeeeccCCCCCCHH-----HHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          744 D-F-----KALDCLHSTNCSLNIF-----DKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       744 ~-~-----~~l~~l~~~~~~l~~~-----~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                      . .     .+++++... ..+...     .......++++++.++   |+.+|+||||||.|||          |||.++
T Consensus       115 ~~~~~~~~lV~e~l~G~-~~L~~~l~~~~l~~~~~~~i~~~l~~l---H~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~  190 (239)
T PRK01723        115 HGLFYRADILIERIEGA-RDLVALLQEAPLSEEQWQAIGQLIARF---HDAGVYHADLNAHNILLDPDGKFWLIDFDRGE  190 (239)
T ss_pred             cCcceeeeEEEEecCCC-CCHHHHHhcCCCCHHHHHHHHHHHHHH---HHCCCCCCCCCchhEEEcCCCCEEEEECCCcc
Confidence            1 1     222322211 111100     0123467888999998   5789999999999998          888877


Q ss_pred             ccc
Q 047196          803 LLT  805 (827)
Q Consensus       803 ~~~  805 (827)
                      ...
T Consensus       191 ~~~  193 (239)
T PRK01723        191 LRT  193 (239)
T ss_pred             cCC
Confidence            643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=2.4e-09  Score=120.17  Aligned_cols=127  Identities=28%  Similarity=0.351  Sum_probs=59.2

Q ss_pred             CCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEE
Q 047196          218 CKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIY  297 (827)
Q Consensus       218 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  297 (827)
                      +..++.+++..|.+.. +-..+..+++|..|++.+|+|.+ +...+..+++|++|+|++|.|+...+  +..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhhe
Confidence            3444444455554442 22234555556666666666652 22224556666666666666654432  22333344444


Q ss_pred             ecCCccccccChhhhcCCCCccEEeCcCCccccccC-ccccCCCCCcEEEcCCCcc
Q 047196          298 LLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIP-SFITNASKLVYLDMGTNSF  352 (827)
Q Consensus       298 l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l  352 (827)
                      +++|.+...-..   ..++.|+.+++++|++...-+ . ...+.+++.+++..|.+
T Consensus       147 l~~N~i~~~~~~---~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  147 LSGNLISDISGL---ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             eccCcchhccCC---ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            444444321110   124555555555555553322 1 23444555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=2.9e-09  Score=119.42  Aligned_cols=173  Identities=28%  Similarity=0.338  Sum_probs=81.9

Q ss_pred             CCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCc
Q 047196          314 SLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIG  393 (827)
Q Consensus       314 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~  393 (827)
                      .+.+|+.|++..|++... ...+..+.+|++|++++|.++...+                 +..+. .|+.|++++|.++
T Consensus        93 ~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~-----------------l~~l~-~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG-----------------LSTLT-LLKELNLSGNLIS  153 (414)
T ss_pred             cccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc-----------------hhhcc-chhhheeccCcch
Confidence            345566666666666532 2224556666666666666653321                 11222 3555666666665


Q ss_pred             cccCccccCCCCCceEeccCcccccccc-ccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccc
Q 047196          394 GSIPQLISNLSNLLLLDLEGNKLTGSIP-VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCL  472 (827)
Q Consensus       394 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  472 (827)
                      ..  ..+..+.+|+.+++++|+++..-+ . ...+.+++.+++..|.+..  ...+..+..+..+++.+|.++..-+  +
T Consensus       154 ~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l  226 (414)
T KOG0531|consen  154 DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--L  226 (414)
T ss_pred             hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--c
Confidence            22  223335666666666666654333 1 3455555666666665541  2223333444444555555542221  1


Q ss_pred             cCCCC--CCccccCCCcccccCCccccccccccccCCCCCCCC
Q 047196          473 GNLTS--LRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD  513 (827)
Q Consensus       473 ~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  513 (827)
                      ..+..  |+.+++++|.+... +..+..+..+..+|+++|+++
T Consensus       227 ~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  227 NELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence            11111  45555555555432 122333344444444444443

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.67  E-value=8.2e-08  Score=107.66  Aligned_cols=122  Identities=25%  Similarity=0.367  Sum_probs=77.0

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccchHHH----------------------------------------HHHH
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMAL----------------------------------------KSFE  719 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~----------------------------------------~~~~  719 (827)
                      .+.||.|++|.||+|++++|+.||||+.+.......                                        -.|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            367999999999999999999999999854321100                                        0255


Q ss_pred             HHHHHHHhcC----CCCceEEEeeee---cCCceeeeeeccCCCCCCHH--------HHHHHHHHHHHHHHHHHhcCCCC
Q 047196          720 AECEVMKNIR----HRNHVKRISSCS---NEDFKALDCLHSTNCSLNIF--------DKLNIMIDVASALEYLHFSHSTP  784 (827)
Q Consensus       720 ~Ei~~l~~l~----H~niv~~~~~~~---~~~~~~l~~l~~~~~~l~~~--------~~~~i~~~ia~~L~~Lh~~h~~~  784 (827)
                      +|++.+.+++    |.+-|.....+.   ......++++...  .+...        ++..++..+++.  |++..|..+
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~--~L~~~~~~~~~~~~~~~ia~~~~~~--~l~ql~~~g  277 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGI--PLSDIAALDEAGLDRKALAENLARS--FLNQVLRDG  277 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCc--ccccHHHHHhcCCCHHHHHHHHHHH--HHHHHHhCC
Confidence            5666665553    444444433332   2333444555432  22111        234566655553  334446789


Q ss_pred             eEEccCCCccee----------eeccccccc
Q 047196          785 VIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       785 iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      ++|+|+||+||+          |||+++.+.
T Consensus       278 ~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       278 FFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             ceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            999999999987          999987764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=2.1e-08  Score=79.28  Aligned_cols=58  Identities=40%  Similarity=0.508  Sum_probs=27.6

Q ss_pred             CcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeeccc
Q 047196          221 LQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN  278 (827)
Q Consensus       221 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  278 (827)
                      |++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444444444443333444445555555555555544444444555555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=3.1e-08  Score=78.32  Aligned_cols=61  Identities=33%  Similarity=0.396  Sum_probs=55.2

Q ss_pred             ccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccc
Q 047196          195 HYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKL  255 (827)
Q Consensus       195 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  255 (827)
                      ++|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3789999999999987778899999999999999999988888999999999999999975

...

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.58  E-value=1.9e-07  Score=91.04  Aligned_cols=121  Identities=16%  Similarity=0.131  Sum_probs=80.5

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEE-EeeeecCCceeeeeeccCCCCCC
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR-ISSCSNEDFKALDCLHSTNCSLN  759 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~-~~~~~~~~~~~l~~l~~~~~~l~  759 (827)
                      +.++.|.++.||+++.. |..|++|+...... ....+.+|+++++.+.+.++++. +..........++++......-.
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~~~   81 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTE   81 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCccccc
Confidence            46789999999999865 67899998754321 12346789999999877666643 33333334455555544321100


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC--CCCeEEccCCCccee---------eeccccc
Q 047196          760 IFDKLNIMIDVASALEYLHFSH--STPVIHCDLKPKNVF---------DFGIGRL  803 (827)
Q Consensus       760 ~~~~~~i~~~ia~~L~~Lh~~h--~~~iiHrDlK~~NIl---------DFGla~~  803 (827)
                      ......++.+++++++.||...  ...++|+|+||.||+         |||.|..
T Consensus        82 ~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~~~~~~liDf~~a~~  136 (170)
T cd05151          82 DFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLDDGRLWLIDWEYAGM  136 (170)
T ss_pred             cccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEECCeEEEEecccccC
Confidence            1112346678999999997543  334799999999987         8887764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=5.2e-08  Score=116.88  Aligned_cols=106  Identities=20%  Similarity=0.330  Sum_probs=88.2

Q ss_pred             cccEEEeeccc--ccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEE
Q 047196          196 YLKVLFLAKNM--FHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLV  273 (827)
Q Consensus       196 ~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  273 (827)
                      .|++|-+..|.  +.-..+..|..++.|++|||++|.=-+.+|+.++++-+||+|+|++..++ .+|..+++|+.|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            68888888886  43333444778999999999998777789999999999999999999998 8999999999999999


Q ss_pred             eecccCcccCchhhhcCCCccEEEecCCc
Q 047196          274 LGFNNLVGVVPAAIFNMSTVKKIYLLDNS  302 (827)
Q Consensus       274 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  302 (827)
                      +..+.....+|.....+.+|++|.+....
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccc
Confidence            99887766667777778888888887654

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=6.4e-08  Score=114.44  Aligned_cols=119  Identities=28%  Similarity=0.368  Sum_probs=74.8

Q ss_pred             HHHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCce----EEEeeeecCCc
Q 047196          670 LFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV----KRISSCSNEDF  745 (827)
Q Consensus       670 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv----~~~~~~~~~~~  745 (827)
                      .....+.|...+.||+|+||+||+|...+|+.||+|+-+....  + +|.-=-+++.+++ +-+.    .+..++.-.+.
T Consensus       693 ~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~--W-EfYI~~q~~~RLk-~~~~~~~~~~~~a~~~~~~  768 (974)
T KOG1166|consen  693 FEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP--W-EFYICLQVMERLK-PQMLPSIMHISSAHVFQNA  768 (974)
T ss_pred             eeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc--e-eeeehHHHHHhhc-hhhhcchHHHHHHHccCCc
Confidence            3445567888899999999999999987799999998643321  1 1222334445554 2211    11111111111


Q ss_pred             eee-----------eeeccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          746 KAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       746 ~~l-----------~~l~~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                      .++           +.+. .....+|.-.+.++.++++.++.||   ..+|||+||||.|.+
T Consensus       769 S~lv~ey~~~Gtlld~~N-~~~~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfl  826 (974)
T KOG1166|consen  769 SVLVSEYSPYGTLLDLIN-TNKVMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFL  826 (974)
T ss_pred             ceeeeeccccccHHHhhc-cCCCCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeE
Confidence            111           1111 2234566667788899999999995   567999999999965

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=4e-08  Score=113.77  Aligned_cols=146  Identities=21%  Similarity=0.313  Sum_probs=96.9

Q ss_pred             ccceEecCCceEEEEEEe-cCCcEEEEEEEc-----ccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ceeee
Q 047196          679 KENLIGVGSFGSVYKGRL-HDGIEVAIKVFH-----QNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKALD  749 (827)
Q Consensus       679 ~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~-----~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~l~  749 (827)
                      ..+++|.|++|.|+.... ......+.|...     ..... ....+..|..+-..++|+|++..+..+.+..  ...|+
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE  401 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSME  401 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhh
Confidence            457899999998887754 334445555432     11111 1223667888889999999876554433321  11122


Q ss_pred             eecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc---
Q 047196          750 CLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS---  809 (827)
Q Consensus       750 ~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~---  809 (827)
                      +...       ....+...+...+..|+..|+.|+   |+.+|.|||+|++|++          |||.+.....+.+   
T Consensus       402 ~~~~Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~---h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~  478 (601)
T KOG0590|consen  402 YCPYDLFSLVMSNGKLTPLEADCFFKQLLRGVKYL---HSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNI  478 (601)
T ss_pred             cccHHHHHHHhcccccchhhhhHHHHHHHHHHHHH---HhcCceeccCccccEEEecCCceEEeecCcceeeccCcchhh
Confidence            2111       122455667778999999999999   5788999999999987          9999887654433   


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ......+|+-.|+|||++
T Consensus       479 ~~~~g~~gS~pY~apE~~  496 (601)
T KOG0590|consen  479 HESSGIVGSDPYLAPEVL  496 (601)
T ss_pred             hhhcCcccCCcCcCcccc
Confidence            233445689999999985

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.47  E-value=2.3e-08  Score=110.35  Aligned_cols=141  Identities=23%  Similarity=0.308  Sum_probs=94.5

Q ss_pred             eEecCCceEEEEEEe----cCCcEEEEEEEcccchH--HHHHHHHHHHHHHhcC-CCCceEEEeeeecCCce--eeeeec
Q 047196          682 LIGVGSFGSVYKGRL----HDGIEVAIKVFHQNCAM--ALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFK--ALDCLH  752 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~~--~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~--~l~~l~  752 (827)
                      ++|+|+||+|+..+-    +.|..+|.|++.+....  .......|..++...+ ||.+|++......+...  .+++..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            368999999998642    24778999988654321  1125567888999998 99999977665444322  223332


Q ss_pred             cCC-----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccccee
Q 047196          753 STN-----CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV  817 (827)
Q Consensus       753 ~~~-----~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~g  817 (827)
                      ...     ..-..++....+..+|+.+-.+.+.|+-+|+|||+|++||+          |||+.|.......     .+|
T Consensus        81 gg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~-----~cg  155 (612)
T KOG0603|consen   81 GGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI-----ACG  155 (612)
T ss_pred             cchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhh-----ccc
Confidence            211     11223344455556666555555568999999999999998          9999987654332     279


Q ss_pred             cccccccccC
Q 047196          818 TIGYMAPGLL  827 (827)
Q Consensus       818 t~~Y~APE~l  827 (827)
                      |.-|||||++
T Consensus       156 t~eymApEI~  165 (612)
T KOG0603|consen  156 TYEYRAPEII  165 (612)
T ss_pred             chhhhhhHhh
Confidence            9999999984

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.47  E-value=6.8e-08  Score=112.18  Aligned_cols=146  Identities=23%  Similarity=0.255  Sum_probs=94.3

Q ss_pred             cccccceEecCCceEEEEEEecCCcEEEEEEEcccc-hHHHHHHHH---HHHHHHhcCCCCceEEEeeeecCCceeee--
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC-AMALKSFEA---ECEVMKNIRHRNHVKRISSCSNEDFKALD--  749 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~~~---Ei~~l~~l~H~niv~~~~~~~~~~~~~l~--  749 (827)
                      ++.-.+.+|.+.|=+|.||+.+.|. |+||++-+.. .-..+.|.+   |++ ..-++|||.+++...-......++.  
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRq  101 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQ  101 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHH
Confidence            4566678999999999999988886 8999986543 223334443   444 5667899999877664443333331  


Q ss_pred             ----eeccCC---CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc--ccCCCcc
Q 047196          750 ----CLHSTN---CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL--LTGDRSM  810 (827)
Q Consensus       750 ----~l~~~~---~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~--~~~~~~~  810 (827)
                          -+|..-   .-+...++.=|+.|+..|+.-+   |..+|+|+|||.+|||          ||.-=|.  +..|...
T Consensus       102 yvkhnLyDRlSTRPFL~~iEKkWiaFQLL~al~qc---H~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPa  178 (1431)
T KOG1240|consen  102 YVKHNLYDRLSTRPFLVLIEKKWIAFQLLKALSQC---HKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPA  178 (1431)
T ss_pred             HHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHH---HHcCccccccccceEEEeeechhhhhcccccCCccCCCCCcc
Confidence                122211   1233445666999999999888   6789999999999999          8864442  1223222


Q ss_pred             cccccee----ccccccccc
Q 047196          811 IQTETLV----TIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~g----t~~Y~APE~  826 (827)
                      .-+....    -..|+|||-
T Consensus       179 df~fFFDTSrRRtCYiAPER  198 (1431)
T KOG1240|consen  179 DFTFFFDTSRRRTCYIAPER  198 (1431)
T ss_pred             cceEEEecCCceeeecChHh
Confidence            1111111    236999994

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.44  E-value=3.8e-08  Score=101.04  Aligned_cols=165  Identities=20%  Similarity=0.198  Sum_probs=120.7

Q ss_pred             ccccCCCCCCEEECCCCCCCccCChhh----hhccccceEEecCCCCCC----c---------cccccCCCCCCcEEEcC
Q 047196          116 PQLGNLSSLTTLNLSHNKLSGDIPPSI----FTMHKLKFLDFSDNQLSG----S---------LSSVTFNLSSVLDIRLD  178 (827)
Q Consensus       116 ~~l~~L~~L~~L~Ls~N~l~g~~p~~~----~~l~~L~~LdLs~N~l~g----~---------~p~~~~~l~~L~~L~L~  178 (827)
                      +++...+.|++||||.|-|.-.-+..|    .++..|++|.|.+|.+.-    .         .......-..|+++...
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            356677799999999999875555444    467889999999998751    1         11224455678999999


Q ss_pred             CCCCCCCcch----hHhhccccccEEEeecccccc----cCCccCCCCCCCcEEEccCCCCcc----cCCCcCcCCcccc
Q 047196          179 SDKLSGELPV----NICNYLHYLKVLFLAKNMFHG----QIPLALSKCKRLQLLNLGFKKLSG----AIPKEISNLTILR  246 (827)
Q Consensus       179 ~n~l~g~ip~----~~~~~~~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~  246 (827)
                      .|++.. -+.    ..+...+.|+.+.++.|.+.-    .+-..+..+++|+.|||.+|.|+.    .+...+..+++|+
T Consensus       166 rNrlen-~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  166 RNRLEN-GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             cccccc-ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence            998863 232    334555789999999997752    123457899999999999999973    2445667788999


Q ss_pred             EEEcccccccccccccc-----cCcCCCcEEEeecccCcc
Q 047196          247 KISLRNNKLRGEIPHEI-----GYLPNLENLVLGFNNLVG  281 (827)
Q Consensus       247 ~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~  281 (827)
                      .|++++|.+...-...|     ...++|++|.+.+|.++.
T Consensus       245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             eecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            99999999975433332     246889999999998864

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.36  E-value=2e-06  Score=97.76  Aligned_cols=126  Identities=21%  Similarity=0.280  Sum_probs=75.8

Q ss_pred             hcccccceEecCCceEEEEEEecC-CcEEEEEEEcccchH------------------------------H----HH---
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAM------------------------------A----LK---  716 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~------------------------------~----~~---  716 (827)
                      ..|+. +.+|+|++|.||+|++++ |+.||||+.+.+...                              .    .+   
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34665 789999999999999987 999999999643210                              0    01   


Q ss_pred             ---HHHHHHHHHHhcC----CCCceEEEeeee---cCCceeeeeeccCCCCCCHH--------HHHHHHHHHHHHHHHHH
Q 047196          717 ---SFEAECEVMKNIR----HRNHVKRISSCS---NEDFKALDCLHSTNCSLNIF--------DKLNIMIDVASALEYLH  778 (827)
Q Consensus       717 ---~~~~Ei~~l~~l~----H~niv~~~~~~~---~~~~~~l~~l~~~~~~l~~~--------~~~~i~~~ia~~L~~Lh  778 (827)
                         .|.+|+.-+.+++    +.+.|.....+.   ......|+++...  .++..        ++..++...++  .|+.
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~--~l~d~~~l~~~g~d~~~la~~~v~--~~~~  274 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGI--PVSDVAALRAAGTDMKLLAERGVE--VFFT  274 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCc--cHHhHHHHHhcCCCHHHHHHHHHH--HHHH
Confidence               2455665555553    444444333332   2334445555432  22211        11233333322  2344


Q ss_pred             hcCCCCeEEccCCCccee--------------eeccccccc
Q 047196          779 FSHSTPVIHCDLKPKNVF--------------DFGIGRLLT  805 (827)
Q Consensus       779 ~~h~~~iiHrDlK~~NIl--------------DFGla~~~~  805 (827)
                      ..+..+++|+|+||+||+              |||+...+.
T Consensus       275 Qif~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        275 QVFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             HHHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            445689999999999987              999877654

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=98.28  E-value=1.1e-06  Score=91.38  Aligned_cols=144  Identities=20%  Similarity=0.284  Sum_probs=81.3

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCC----------CCceEEEeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRH----------RNHVKRISSCS  741 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H----------~niv~~~~~~~  741 (827)
                      .+...+.||.|+++.||.++.. +|+++|||++...   .....+++++|.-....+.+          -.++..++...
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            4556788999999999999975 5899999997532   23346777777755555433          11221111111


Q ss_pred             cC-------------Cce------eee-----------eeccCCC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEc
Q 047196          742 NE-------------DFK------ALD-----------CLHSTNC---SLNIFDKLNIMIDVASALEYLHFSHSTPVIHC  788 (827)
Q Consensus       742 ~~-------------~~~------~l~-----------~l~~~~~---~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHr  788 (827)
                      -.             .+.      .+.           .+.....   .+....|+.+..|+.+.+++||   ..+|+|+
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh---~~GlVHg  169 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLH---SYGLVHG  169 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEEES
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHh---hcceEec
Confidence            00             010      000           0000001   1122345667788899999995   5789999


Q ss_pred             cCCCccee----------eecccccccCCCccccccceeccccccccc
Q 047196          789 DLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       789 DlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ||||+|++          ||+-........   .. ...+.+|.+||+
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~g~~~---~~-~~~~~~~~PPe~  213 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRAGTRY---RC-SEFPVAFTPPEL  213 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEETTEEE---EG-GGS-TTTS-HHH
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeecCcee---ec-cCCCcccCChhh
Confidence            99999998          666544332111   11 224678999985

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.28  E-value=1.5e-07  Score=92.87  Aligned_cols=145  Identities=17%  Similarity=0.326  Sum_probs=97.0

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee--------
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC--------  750 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~--------  750 (827)
                      .++.+...|..|+|++.. ..+++|++...  ...-.+.|..|.-.++-..||||.+.+|.|..+....+..        
T Consensus       196 tkl~e~hsgelwrgrwqg-ndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gsl  274 (448)
T KOG0195|consen  196 TKLAESHSGELWRGRWQG-NDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSL  274 (448)
T ss_pred             hhhccCCCcccccccccC-cchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHH
Confidence            457888899999999974 45556666432  3334567999999999999999999999998875433311        


Q ss_pred             ---eccC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-eec-ccccccCCCcc--ccccceeccccc
Q 047196          751 ---LHST-NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-DFG-IGRLLTGDRSM--IQTETLVTIGYM  822 (827)
Q Consensus       751 ---l~~~-~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-DFG-la~~~~~~~~~--~~~~~~gt~~Y~  822 (827)
                         +|.. +...+..+..++|.++|+|++|||.. ++-|..--+.+..|+ |-. .||+-..+...  ......-.|.||
T Consensus       275 ynvlhe~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~pawm  353 (448)
T KOG0195|consen  275 YNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYSPAWM  353 (448)
T ss_pred             HHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeeeeccccccCcccC
Confidence               2221 12345667889999999999999964 455555567777777 333 33333222221  111122478999


Q ss_pred             ccccC
Q 047196          823 APGLL  827 (827)
Q Consensus       823 APE~l  827 (827)
                      +||.+
T Consensus       354 speal  358 (448)
T KOG0195|consen  354 SPEAL  358 (448)
T ss_pred             CHHHH
Confidence            99964

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.23  E-value=3.1e-07  Score=106.78  Aligned_cols=123  Identities=27%  Similarity=0.431  Sum_probs=76.2

Q ss_pred             hcccccceEecCCceEEEEEEecC-CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|+..+.|..|+||.||..+.+. .+.+|+| +.++.-     +.|-  ++.....|.+|   |.|....       ..
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~k-iNkq~l-----ilRn--ilt~a~npfvv---gDc~tll-------k~  144 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMK-INKQNL-----ILRN--ILTFAGNPFVV---GDCATLL-------KN  144 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhc-ccccch-----hhhc--cccccCCccee---chhhhhc-------cc
Confidence            468888999999999999998764 5668884 333221     1111  44444455554   3332110       00


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc--------------
Q 047196          754 TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS--------------  809 (827)
Q Consensus       754 ~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~--------------  809 (827)
                       .+.+ |       .+.+.+++|+   |+.+|+|||+||.|++          |||+.+.......              
T Consensus       145 -~g~l-P-------vdmvla~Eyl---h~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~E  212 (1205)
T KOG0606|consen  145 -IGPL-P-------VDMVLAVEYL---HSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHE  212 (1205)
T ss_pred             -CCCC-c-------chhhHHhHhh---ccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHH
Confidence             0111 1       1226689999   6789999999999988          9999876321100              


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ......+||+.|+||||+
T Consensus       213 f~dKqvcgTPeyiaPeVi  230 (1205)
T KOG0606|consen  213 FQDKQVCGTPEYIAPEVI  230 (1205)
T ss_pred             hhhccccCCccccChhhh
Confidence            011224699999999986

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.22  E-value=1.2e-06  Score=91.33  Aligned_cols=65  Identities=25%  Similarity=0.248  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eecccccccCCC--ccc---cccceeccc
Q 047196          760 IFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRLLTGDR--SMI---QTETLVTIG  820 (827)
Q Consensus       760 ~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~~~~~~~--~~~---~~~~~gt~~  820 (827)
                      ...+.-|..|+.+|+.||   |+++|.|||+|+.|||              |||++-.-...+  -..   ....-|--.
T Consensus       340 ~r~~~~~laQlLEav~hL---~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~  416 (598)
T KOG4158|consen  340 YRTGRVILAQLLEAVTHL---HKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAK  416 (598)
T ss_pred             hHHHHHHHHHHHHHHHHH---HHccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcce
Confidence            334556778888888888   5789999999999998              999763221100  001   111125667


Q ss_pred             ccccccC
Q 047196          821 YMAPGLL  827 (827)
Q Consensus       821 Y~APE~l  827 (827)
                      -||||+.
T Consensus       417 lmAPEi~  423 (598)
T KOG4158|consen  417 LMAPEIA  423 (598)
T ss_pred             ecchhhh
Confidence            8999973

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.22  E-value=4.9e-08  Score=108.34  Aligned_cols=177  Identities=27%  Similarity=0.282  Sum_probs=102.9

Q ss_pred             CccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCC----------CCCCccccccccccEEecCCCcccc
Q 047196          397 PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLA----------GSIPDQLCHLARLNTLGLAGNKFSG  466 (827)
Q Consensus       397 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~----------g~~p~~~~~l~~L~~L~Ls~N~l~~  466 (827)
                      |-.+..+.+|++|.|.++.+... -.-..--..|+.|. -+|.+.          |.+-..+ ....|...+.++|++. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence            45567778899999988877531 00000001222222 122221          1111110 1224666677777776 


Q ss_pred             cCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccC
Q 047196          467 SIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGD  546 (827)
Q Consensus       467 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  546 (827)
                      .+..++.-++.|+.|||++|+++...  .+..++.|+.|||++|.+.-..-.....+. |+.|++++|.++..  ..+.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence            45556666677777777777776643  566777777777777777654433444444 77777777777632  34567


Q ss_pred             CCCCCEEECCCCcceeec---C-CCCcCCceEeCcCCcCe
Q 047196          547 LKDLQNISLACNGLEGLI---P-ESFGYLTELNLSFNKLE  582 (827)
Q Consensus       547 l~~L~~L~Ls~N~l~g~i---p-~~~~~L~~L~ls~N~l~  582 (827)
                      +++|+.||+++|-|++.-   | ..+..|..|+|.+|.+.
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            777777777777776532   1 22346677777777664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=8.6e-08  Score=85.35  Aligned_cols=135  Identities=18%  Similarity=0.232  Sum_probs=88.2

Q ss_pred             cccEEEccCCcCccccCc---cccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEE
Q 047196          381 SLENIYISNCNIGGSIPQ---LISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTL  457 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  457 (827)
                      .+..++|++|.+- .+++   .+.....|+..+|++|.+....+..-...+.++.|+|++|.++ .+|.++..++.|+.|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            3556777777764 2333   3344456677788888887544333345567788888888887 677778888888888


Q ss_pred             ecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCccc
Q 047196          458 GLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLD  519 (827)
Q Consensus       458 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~  519 (827)
                      +++.|.+. ..|..+..+.++-+||..+|.+.. +|.....-+..-..++.++.+.+.-+..
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCccc
Confidence            88888887 456666667778888888777763 3433333333344556666666655543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.09  E-value=2.3e-05  Score=77.20  Aligned_cols=119  Identities=19%  Similarity=0.175  Sum_probs=78.2

Q ss_pred             ceEecCCceEEEEEEecC-------CcEEEEEEEcccc-------------h---------HHH----HHHHHHHHHHHh
Q 047196          681 NLIGVGSFGSVYKGRLHD-------GIEVAIKVFHQNC-------------A---------MAL----KSFEAECEVMKN  727 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~-------g~~vAvK~l~~~~-------------~---------~~~----~~~~~Ei~~l~~  727 (827)
                      ..||.|.-+.||.|.-.+       +..+|||+.+...             .         ...    ...++|.+.|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999997543       4799999874211             0         001    123489999999


Q ss_pred             cCCC--CceEEEeeeecCCceeeeeeccCC--------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          728 IRHR--NHVKRISSCSNEDFKALDCLHSTN--------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       728 l~H~--niv~~~~~~~~~~~~~l~~l~~~~--------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                      +...  ++-+.+++  .....+|+++....        ..++..+...+..++.+++.+++  |..+|||+|+++.||+ 
T Consensus        83 l~~~Gv~vP~pi~~--~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~--H~~glVHGDLs~~NIL~  158 (197)
T cd05146          83 MQKAGIPCPEVVVL--KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLY--KECNLVHADLSEYNMLW  158 (197)
T ss_pred             HHHcCCCCCeEEEe--cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHH--HhCCeecCCCCHHHEEE
Confidence            8643  33334432  55566666654321        11222234566778888888885  5678999999999998 


Q ss_pred             --------eeccccc
Q 047196          797 --------DFGIGRL  803 (827)
Q Consensus       797 --------DFGla~~  803 (827)
                              |||.|-.
T Consensus       159 ~~~~v~iIDF~qav~  173 (197)
T cd05146         159 HDGKVWFIDVSQSVE  173 (197)
T ss_pred             ECCcEEEEECCCcee
Confidence                    8887643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=7.9e-07  Score=96.63  Aligned_cols=68  Identities=16%  Similarity=0.260  Sum_probs=53.8

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSC  740 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~  740 (827)
                      ...+|+....+|+|+||+|+.+... ++..+|||++.... .....+..+|+.-++++.|++++++...+
T Consensus        47 ~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~  116 (516)
T KOG1033|consen   47 EANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAW  116 (516)
T ss_pred             hhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheece
Confidence            3457888999999999999999865 45689999987543 34456778899999999999999866543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.06  E-value=1.6e-07  Score=104.38  Aligned_cols=175  Identities=23%  Similarity=0.276  Sum_probs=83.2

Q ss_pred             CCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCC---ccc--cccC--------------------C------
Q 047196          120 NLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG---SLS--SVTF--------------------N------  168 (827)
Q Consensus       120 ~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g---~~p--~~~~--------------------~------  168 (827)
                      +++.|+.+..-.-.-++  |-.+..+.+||+|.|.++.++.   ..+  ..+.                    .      
T Consensus        85 kt~~lkl~~~pa~~pt~--pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~  162 (1096)
T KOG1859|consen   85 KTKVLKLLPSPARDPTE--PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV  162 (1096)
T ss_pred             hheeeeecccCCCCCCC--CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh
Confidence            33334444333333333  6678899999999999998862   111  0000                    0      


Q ss_pred             CCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEE
Q 047196          169 LSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKI  248 (827)
Q Consensus       169 l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  248 (827)
                      ...|...+.+.|.+.  .-.+...+++.|+.|||++|+++..  ..+..|+.|++|||++|.+.-..--...++. |+.|
T Consensus       163 Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L  237 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL  237 (1096)
T ss_pred             hhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heee
Confidence            001222333333332  1111223344556666666665532  1455556666666666665522111222222 5566


Q ss_pred             EcccccccccccccccCcCCCcEEEeecccCcccCc-hhhhcCCCccEEEecCCcc
Q 047196          249 SLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVP-AAIFNMSTVKKIYLLDNSL  303 (827)
Q Consensus       249 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~l  303 (827)
                      .+++|.++..  ..+.+|++|+.|||++|-+.+.-. ..+..+..|+.|+|.+|.+
T Consensus       238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6666655421  234555666666666665544321 1123344455555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2.4e-07  Score=92.97  Aligned_cols=183  Identities=23%  Similarity=0.344  Sum_probs=89.7

Q ss_pred             cccceecCCCCCcEEEEEcCCCCCccccCccccCCCC--CCEEECCCCCCCccCC---hhhhh-ccccceEEecCCCCCC
Q 047196           87 NWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSS--LTTLNLSHNKLSGDIP---PSIFT-MHKLKFLDFSDNQLSG  160 (827)
Q Consensus        87 ~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~--L~~L~Ls~N~l~g~~p---~~~~~-l~~L~~LdLs~N~l~g  160 (827)
                      +|.|..-+.  .--+.+|+.+..|.   |..++.+..  ...+.+..--+  ..|   +.+.- =++|++||||+-.++.
T Consensus       127 Rfyr~~~de--~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~--~~prlae~~~~frsRlq~lDLS~s~it~  199 (419)
T KOG2120|consen  127 RFYRLASDE--SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFM--DQPRLAEHFSPFRSRLQHLDLSNSVITV  199 (419)
T ss_pred             HHhhccccc--cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhh--cCchhhhhhhhhhhhhHHhhcchhheeH
Confidence            566655443  35778888877665   333333322  22233332111  112   11111 1347777777766653


Q ss_pred             c-cccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeeccc-cccc-CCccCCCCCCCcEEEccCCCCcccCCC
Q 047196          161 S-LSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNM-FHGQ-IPLALSKCKRLQLLNLGFKKLSGAIPK  237 (827)
Q Consensus       161 ~-~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~  237 (827)
                      . +-..+...+.|+.|.|.++.+...|-..+.... +|+.|+|+.+. |+.. ..--+.+|+.|+.|+|+.+.++...-.
T Consensus       200 stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt  278 (419)
T KOG2120|consen  200 STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT  278 (419)
T ss_pred             HHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence            2 222234455566666666666655555555433 67777777553 2211 112245677777777777766533211


Q ss_pred             -cCcCC-ccccEEEccccc--c-cccccccccCcCCCcEEEeecc
Q 047196          238 -EISNL-TILRKISLRNNK--L-RGEIPHEIGYLPNLENLVLGFN  277 (827)
Q Consensus       238 -~~~~l-~~L~~L~Ls~N~--l-~~~~p~~~~~l~~L~~L~Ls~N  277 (827)
                       .+.+. .+|+.|+|++..  + ...+..-...+++|.+||||.|
T Consensus       279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence             11111 345666666542  1 1122222345566666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=3.3e-06  Score=84.89  Aligned_cols=85  Identities=24%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             CccccEEEcccccccc--cccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCcc
Q 047196          242 LTILRKISLRNNKLRG--EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVE  319 (827)
Q Consensus       242 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  319 (827)
                      .+.++.|||.+|.|+.  ++-.-+.++|.|++|+|+.|++...|...-..+.+|+.|-+.+..+.-.........+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4667778888887762  33334567788888888888776554322234455666655554443222222222444455


Q ss_pred             EEeCcCC
Q 047196          320 RLNLGLN  326 (827)
Q Consensus       320 ~L~L~~N  326 (827)
                      .|.++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            5555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=4.1e-06  Score=84.29  Aligned_cols=85  Identities=22%  Similarity=0.290  Sum_probs=44.2

Q ss_pred             CCCCCEEECCCCCCCc--cCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhcccccc
Q 047196          121 LSSLTTLNLSHNKLSG--DIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLK  198 (827)
Q Consensus       121 L~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~  198 (827)
                      .+.++.|||.+|.|+.  .+-.-+.+|+.|++|+||.|.++..|-..-..+.+|++|-|.+..++=.--.++..-++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4566666777776653  23333456677777777777776554433344445555555554443222222223334555


Q ss_pred             EEEeecc
Q 047196          199 VLFLAKN  205 (827)
Q Consensus       199 ~L~Ls~N  205 (827)
                      .|++|.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            5555555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=1.4e-05  Score=57.98  Aligned_cols=37  Identities=35%  Similarity=0.704  Sum_probs=30.3

Q ss_pred             CCCCEEECCCCCCCccCChhhhhccccceEEecCCCCC
Q 047196          122 SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS  159 (827)
Q Consensus       122 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~  159 (827)
                      ++|++|+|++|+|+ .+|+.+++|++|++||+++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47889999999998 67778899999999999999887

...

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=97.85  E-value=1.3e-05  Score=78.51  Aligned_cols=58  Identities=24%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------eecccccccCCCccccccceeccccccccc
Q 047196          755 NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------DFGIGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       755 ~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ...+++.+...|+.|+++||+|||..+         ||+||+        .||+++.....      ...||+.|||||+
T Consensus        11 ~~~l~~~~~~~i~~qi~~~L~~lH~~~---------kp~Nil~~~~~~~~~fG~~~~~~~~------~~~g~~~y~aPE~   75 (176)
T smart00750       11 GRPLNEEEIWAVCLQCLRALRELHRQA---------KSGNILLTWDGLLKLDGSVAFKTPE------QSRVDPYFMAPEV   75 (176)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhcC---------CcccEeEcCccceeeccceEeeccc------cCCCcccccChHH
Confidence            345789999999999999999997543         999998        37776654322      1258999999997


Q ss_pred             C
Q 047196          827 L  827 (827)
Q Consensus       827 l  827 (827)
                      +
T Consensus        76 ~   76 (176)
T smart00750       76 I   76 (176)
T ss_pred             h
Confidence            4

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.82  E-value=0.00012  Score=74.55  Aligned_cols=99  Identities=13%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCC--ceEEEeeeecCC-----ceeeeeec
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRN--HVKRISSCSNED-----FKALDCLH  752 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~n--iv~~~~~~~~~~-----~~~l~~l~  752 (827)
                      +.++.|.++.||+++..+|+.+++|....... .....+.+|+++++.+++..  +.+++.++....     +.+++++.
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            56899999999999887778999998754322 13456889999999998644  455666665422     34444443


Q ss_pred             cCC-------CCCCHHHHHHHHHHHHHHHHHHHh
Q 047196          753 STN-------CSLNIFDKLNIMIDVASALEYLHF  779 (827)
Q Consensus       753 ~~~-------~~l~~~~~~~i~~~ia~~L~~Lh~  779 (827)
                      ...       ..++..++..++.++++++.++|.
T Consensus        84 G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  117 (223)
T cd05154          84 GRVLRDRLLRPELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             CEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            321       123445667788888888888883

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=3.2e-06  Score=75.54  Aligned_cols=112  Identities=21%  Similarity=0.252  Sum_probs=71.4

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      .|+..+|++|.+....+..-...+.++.|+|++|+++ .+|..+..++.|+.|+++.|.+. ..|.-+..+.++-.|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            4555677777776444444444557777777777777 46666777777777777777776 456666667777777777


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCcc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPST  495 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  495 (827)
                      +|... .+|..+---+..-..++.++.+.+.-|..
T Consensus       132 ~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  132 ENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             CCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence            77775 45544322233334456677776655543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.74  E-value=7e-06  Score=95.30  Aligned_cols=150  Identities=23%  Similarity=0.271  Sum_probs=103.1

Q ss_pred             cccccceEecCCceEEEEEEec--CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceeeee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH--DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~--~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .|...+.||+|+|+.|-.....  ....+|+|.+....  .....+...|..+-+.+. |+|++..++...+.++.++..
T Consensus        21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~  100 (601)
T KOG0590|consen   21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSL  100 (601)
T ss_pred             cccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccccc
Confidence            4566677999999999888653  34567777765432  223344555777777777 999999999887766555422


Q ss_pred             eccC-----------CC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccC-
Q 047196          751 LHST-----------NC-SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTG-  806 (827)
Q Consensus       751 l~~~-----------~~-~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~-  806 (827)
                      -+..           .. .........+..++..++.|+|-  ..++.|||+||+|.+           |||+|..+.. 
T Consensus       101 ~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~--~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~  178 (601)
T KOG0590|consen  101 SYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHP--ENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNK  178 (601)
T ss_pred             CcccccccccccccCCccCCCCcchhhhhhhhccCccccCc--ccccccCCCCCccchhccCCCcccCCCchhhcccccc
Confidence            1111           11 22334455677888899999942  778999999999976           9999988765 


Q ss_pred             CCc-ccccccee-cccccccccC
Q 047196          807 DRS-MIQTETLV-TIGYMAPGLL  827 (827)
Q Consensus       807 ~~~-~~~~~~~g-t~~Y~APE~l  827 (827)
                      ++. ......+| ++.|+|||+.
T Consensus       179 ~g~~~~~~~~~g~s~~y~a~E~~  201 (601)
T KOG0590|consen  179 NGAERSLKDRCGSSPPYGAPEHL  201 (601)
T ss_pred             CCcceeeecccCCCCCCCCcccc
Confidence            322 22233458 9999999973

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=3.8e-05  Score=55.71  Aligned_cols=37  Identities=38%  Similarity=0.635  Sum_probs=23.9

Q ss_pred             cccEEEcccccccccccccccCcCCCcEEEeecccCcc
Q 047196          244 ILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVG  281 (827)
Q Consensus       244 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  281 (827)
                      +|++|++++|+|+ .+|+.+++|++|++|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5667777777776 456667777777777777777663

...

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.63  E-value=0.00022  Score=68.06  Aligned_cols=119  Identities=18%  Similarity=0.304  Sum_probs=74.2

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEE-cccc--h-----HHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ceeeee
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVF-HQNC--A-----MALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKALDC  750 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l-~~~~--~-----~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~l~~  750 (827)
                      ..+++|+-+.+|.+.+. |..+.+|.- ++.-  +     -...+-.+|++++++++---+-...-+..+++  ...|++
T Consensus         2 ~~i~~GAEa~i~~~~~~-g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDFL-GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeecc-CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            35789999999999775 345666643 2211  1     12356788999999987543333222333333  355565


Q ss_pred             eccCCCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eeccccc
Q 047196          751 LHSTNCS-LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRL  803 (827)
Q Consensus       751 l~~~~~~-l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~  803 (827)
                      +...... .-+..+..++..|-..+.-|   |..+|+|+|+.++||+         |||++..
T Consensus        81 I~G~~lkd~l~~~~~~~~r~vG~~vg~l---H~~givHGDLTtsNiIl~~~~i~~IDfGLg~~  140 (204)
T COG3642          81 IEGELLKDALEEARPDLLREVGRLVGKL---HKAGIVHGDLTTSNIILSGGRIYFIDFGLGEF  140 (204)
T ss_pred             eCChhHHHHHHhcchHHHHHHHHHHHHH---HhcCeecCCCccceEEEeCCcEEEEECCcccc
Confidence            5443211 01111345666676677777   6789999999999987         9999975

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.61  E-value=0.0003  Score=69.09  Aligned_cols=112  Identities=19%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             EEEEEEecCCcEEEEEEEcccc--------------h------------HHHHHHHHHHHHHHhcCCCCc-eEEEeeeec
Q 047196          690 SVYKGRLHDGIEVAIKVFHQNC--------------A------------MALKSFEAECEVMKNIRHRNH-VKRISSCSN  742 (827)
Q Consensus       690 ~Vy~~~~~~g~~vAvK~l~~~~--------------~------------~~~~~~~~Ei~~l~~l~H~ni-v~~~~~~~~  742 (827)
                      -||.|...+|..||||..+...              .            ......++|.+.|.++....+ |+-. +...
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p-~~~~   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKP-YDYN   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--E-EEEE
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcE-EEEe
Confidence            3899998889999999975311              0            012357789999999987754 3332 2334


Q ss_pred             CCceeeeeeccCCCCCC--------HHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccc
Q 047196          743 EDFKALDCLHSTNCSLN--------IFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLL  804 (827)
Q Consensus       743 ~~~~~l~~l~~~~~~l~--------~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~  804 (827)
                      ....+|+++...+..+.        ..+...+..++.+.+..++  |..+|+|+|+.+.||+         |||.|...
T Consensus        80 ~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~--~~~givHGDLs~~NIlv~~~~~~iIDf~qav~~  156 (188)
T PF01163_consen   80 RNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKML--HKAGIVHGDLSEYNILVDDGKVYIIDFGQAVDS  156 (188)
T ss_dssp             TTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHH--HCTTEEESS-STTSEEEETTCEEE--GTTEEET
T ss_pred             CCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHH--HhcCceecCCChhhEEeecceEEEEecCcceec
Confidence            66667777762221111        1224456667777566654  5779999999999998         88877544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.58  E-value=2.2e-05  Score=92.13  Aligned_cols=94  Identities=20%  Similarity=0.232  Sum_probs=67.4

Q ss_pred             CcchhHhhccccccEEEeecccccc-cCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccc-ccccc
Q 047196          185 ELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG-EIPHE  262 (827)
Q Consensus       185 ~ip~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~  262 (827)
                      ..|..++..+|+|+.|.+++=.+.. .+-....++++|..||+|+.+++..  ..++++++|+.|.+.+=.+.. ..-..
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~  215 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLID  215 (699)
T ss_pred             cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHH
Confidence            5777888888899999998866643 2223345788888999998888744  567888888888888766642 22235


Q ss_pred             ccCcCCCcEEEeecccCc
Q 047196          263 IGYLPNLENLVLGFNNLV  280 (827)
Q Consensus       263 ~~~l~~L~~L~Ls~N~l~  280 (827)
                      +.+|++|++||+|.....
T Consensus       216 LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HhcccCCCeeeccccccc
Confidence            667888888888876543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.58  E-value=1.6e-05  Score=79.01  Aligned_cols=136  Identities=20%  Similarity=0.144  Sum_probs=65.6

Q ss_pred             CCCCcEEEccCCCCcccCC----CcCcCCccccEEEccccccccc-----ccccccCcCCCcEEEeecccCcccC----c
Q 047196          218 CKRLQLLNLGFKKLSGAIP----KEISNLTILRKISLRNNKLRGE-----IPHEIGYLPNLENLVLGFNNLVGVV----P  284 (827)
Q Consensus       218 l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~----p  284 (827)
                      -+.|+....+.|++..-.-    ..+..-..|+.+.+..|.|.-.     +--.+..+.+|+.|||..|-++-.-    .
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            3456666666665531100    0011113456666666655411     0112334566666666666654321    1


Q ss_pred             hhhhcCCCccEEEecCCccccccChhhh-----cCCCCccEEeCcCCccccccCcc------c-cCCCCCcEEEcCCCcc
Q 047196          285 AAIFNMSTVKKIYLLDNSLLGSFSLGID-----LSLPNVERLNLGLNRFSGTIPSF------I-TNASKLVYLDMGTNSF  352 (827)
Q Consensus       285 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p~~------~-~~l~~L~~L~Ls~N~l  352 (827)
                      ..+...+.|+.|.+.+|-++..-...+.     ...|+|..|-..+|...+.+-..      . .+++-|..|.+.+|.+
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            2233344466666666655432111111     23567777777777665432111      1 2456666777777776


Q ss_pred             e
Q 047196          353 S  353 (827)
Q Consensus       353 ~  353 (827)
                      .
T Consensus       316 ~  316 (388)
T COG5238         316 K  316 (388)
T ss_pred             h
Confidence            5

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.58  E-value=0.00059  Score=64.88  Aligned_cols=121  Identities=18%  Similarity=0.252  Sum_probs=79.7

Q ss_pred             ccceEecCCceEEEEEEecCCcEEEEEE-Ecccc-------hHHHHHHHHHHHHHHhcCCCCceEEEee-e-ecCCceee
Q 047196          679 KENLIGVGSFGSVYKGRLHDGIEVAIKV-FHQNC-------AMALKSFEAECEVMKNIRHRNHVKRISS-C-SNEDFKAL  748 (827)
Q Consensus       679 ~~~~iG~G~fg~Vy~~~~~~g~~vAvK~-l~~~~-------~~~~~~~~~Ei~~l~~l~H~niv~~~~~-~-~~~~~~~l  748 (827)
                      ...++-+|+-+.|+++.+. |+...||. +.+..       +-..++..+|++++.+++--.|....-+ + ...+..+|
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            4578999999999999886 56666664 33221       1134678899999999874433322222 2 33556677


Q ss_pred             eeeccCCC-----------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eeccccc
Q 047196          749 DCLHSTNC-----------SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRL  803 (827)
Q Consensus       749 ~~l~~~~~-----------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~  803 (827)
                      ++++....           ..........+..+-+.+.-|   |...|||+||-.+||+             |||++..
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igkl---H~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKL---HDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHh---hhCCeecccccccceEEecCCCcCceEEEeecchhc
Confidence            77654211           111111246777777788888   5778999999999987             9998754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=3.1e-06  Score=85.13  Aligned_cols=57  Identities=19%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             ccEEEcccccccc-cccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCC
Q 047196          245 LRKISLRNNKLRG-EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDN  301 (827)
Q Consensus       245 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n  301 (827)
                      |++|||++..|+. .+...+..+.+|+.|.|.++++...+-..+..-.+|+.++++.+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            5555555554431 12223344555555555555555555555555555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.52  E-value=5.3e-05  Score=75.52  Aligned_cols=114  Identities=16%  Similarity=0.049  Sum_probs=64.4

Q ss_pred             CCccccEEEcccccccccccc-----cccCcCCCcEEEeecccCccc-----CchhhhcCCCccEEEecCCccccccChh
Q 047196          241 NLTILRKISLRNNKLRGEIPH-----EIGYLPNLENLVLGFNNLVGV-----VPAAIFNMSTVKKIYLLDNSLLGSFSLG  310 (827)
Q Consensus       241 ~l~~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~~~~~  310 (827)
                      +-+.|+......|++.. .|.     .+..-.+|+++.+..|.|.-.     +-..++.+.+|+.|++.+|.++-.-...
T Consensus       155 ~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         155 DKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             cCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            44668888888887742 121     122235778888888866421     1112345678888888888776332221


Q ss_pred             hh---cCCCCccEEeCcCCccccccCcc----c--cCCCCCcEEEcCCCcceee
Q 047196          311 ID---LSLPNVERLNLGLNRFSGTIPSF----I--TNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       311 ~~---~~l~~L~~L~L~~N~l~~~~p~~----~--~~l~~L~~L~Ls~N~l~g~  355 (827)
                      +.   ...+.|+.|.+..|-++..-...    |  ...++|..|-..+|...+.
T Consensus       234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            11   23455788887777665322211    1  1235667777777766543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00025  Score=76.93  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=16.8

Q ss_pred             CCCCccccCCCcccccCCccccccccccccCCCCC
Q 047196          476 TSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN  510 (827)
Q Consensus       476 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  510 (827)
                      ++|++|++++|.... .|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence            456666666665442 232222  35666666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.0003  Score=76.30  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=18.6

Q ss_pred             ccccEEEcccccccccccccccCcCCCcEEEeecc
Q 047196          243 TILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN  277 (827)
Q Consensus       243 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  277 (827)
                      ++|++|++++|... .+|+.+-  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45777777766644 3343332  46777777665

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.10  E-value=0.00022  Score=79.48  Aligned_cols=148  Identities=27%  Similarity=0.262  Sum_probs=90.1

Q ss_pred             ccccceEec--CCceEEEEEEe---cCCcEEEEEEEcc--cchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceee
Q 047196          677 FSKENLIGV--GSFGSVYKGRL---HDGIEVAIKVFHQ--NCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       677 ~~~~~~iG~--G~fg~Vy~~~~---~~g~~vAvK~l~~--~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l  748 (827)
                      |....-+|.  |.+|.||.++.   .++..+|+|+=+.  ........=.+|+.-..+++ |+|.|+......+.+..++
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfi  195 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFI  195 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCccee
Confidence            445567899  99999999975   4688899998322  11222223356676666665 8999996666555554444


Q ss_pred             eeeccC----------CCCCCHHHHHHHHHHHHH----HHHHHHhcCCCCeEEccCCCccee-----------eeccccc
Q 047196          749 DCLHST----------NCSLNIFDKLNIMIDVAS----ALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRL  803 (827)
Q Consensus       749 ~~l~~~----------~~~l~~~~~~~i~~~ia~----~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~  803 (827)
                      +.....          ...+.......+..+..+    |+.++   |...|+|-|+||.||+           |||+...
T Consensus       196 qtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~---hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~  272 (524)
T KOG0601|consen  196 QTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHL---HSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSK  272 (524)
T ss_pred             eeccccchhHHhhhcccccCCchhhhhHHhhhhhccccccccc---CCCcccccccchhheecccccceeecCCcceeEE
Confidence            222111          111122223344444444    55555   7889999999999998           8888776


Q ss_pred             ccCCCccc--c-ccc-eecccccccccC
Q 047196          804 LTGDRSMI--Q-TET-LVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~--~-~~~-~gt~~Y~APE~l  827 (827)
                      +....-..  . ... .|-.-|+|||.+
T Consensus       273 i~~~~~~~~~~~~~r~~~~~~Y~~ke~~  300 (524)
T KOG0601|consen  273 ISDGNFSSVFKVSKRPEGDCIYAAKELL  300 (524)
T ss_pred             ccCCccccceeeeecCCCCceEeChhhh
Confidence            65432110  0 011 356679999963

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=97.10  E-value=0.00035  Score=77.78  Aligned_cols=101  Identities=26%  Similarity=0.349  Sum_probs=70.6

Q ss_pred             HHhcCCCCceEEEeeeecCCceeeeeec-----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCc
Q 047196          725 MKNIRHRNHVKRISSCSNEDFKALDCLH-----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPK  793 (827)
Q Consensus       725 l~~l~H~niv~~~~~~~~~~~~~l~~l~-----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~  793 (827)
                      |+.++|.|+.+++|.|.++......+-+           .....++|.-...+.++++.|++|+|  +++--.|+.+++.
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh--~s~i~~hg~l~s~   78 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLH--NSPIGYHGALKSS   78 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHh--cCcceeeeeeccc
Confidence            3568899999999999887544432222           22345788888899999999999997  4554599999999


Q ss_pred             cee----------eecccccccCCCc-cccccceecccccccccC
Q 047196          794 NVF----------DFGIGRLLTGDRS-MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       794 NIl----------DFGla~~~~~~~~-~~~~~~~gt~~Y~APE~l  827 (827)
                      |.+          |||+..+...... .......-..-|.|||++
T Consensus        79 nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPell  123 (484)
T KOG1023|consen   79 NCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELL  123 (484)
T ss_pred             cceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHh
Confidence            976          9999887643111 011111124568999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	827
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-37
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-36
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-21
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-14
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-12
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		3e-09
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		3e-09
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		4e-09
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		4e-09
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		4e-09
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		4e-09
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		4e-09
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		5e-09
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		5e-09
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		5e-09
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		6e-09
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-09
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		1e-08
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-08
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-08
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-08
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-08
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-08
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-08
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-08
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-08
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		2e-08
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-08
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		4e-08
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		4e-08
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-08
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		9e-08
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		9e-08
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		9e-08
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		1e-07
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		1e-07
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-07
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-07
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-07
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-07
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		2e-07
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		2e-07
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-07
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		2e-07
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		2e-07
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		3e-07
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		3e-07
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-07
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		3e-07
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		4e-07
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		4e-07
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		5e-07
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		7e-07
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		7e-07
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		7e-07
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		8e-07
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		9e-07
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-06
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-06
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-06
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		2e-06
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		2e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		3e-06
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		6e-06
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		6e-06
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		6e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		6e-06
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		7e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		7e-06
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		8e-06
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		8e-06
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		8e-06
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		8e-06
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		9e-06
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		9e-06
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		9e-06
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		9e-06
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		1e-05
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		1e-05
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		1e-05
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		1e-05
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		1e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		1e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-05
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		1e-05
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		1e-05
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		1e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		1e-05
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-05
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-05
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		1e-05
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		1e-05
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		1e-05
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-05
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		1e-05
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		2e-05
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-05
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-05
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		2e-05
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-05
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-05
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		2e-05
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		2e-05
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		2e-05
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		2e-05
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		2e-05
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-05
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-05
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		3e-05
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-05
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		3e-05
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		3e-05
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		3e-05
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		3e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		3e-05
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		4e-05
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		4e-05
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		4e-05
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		4e-05
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		4e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		5e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		5e-05
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		5e-05
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		5e-05
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		5e-05
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		5e-05
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		5e-05
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		5e-05
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		5e-05
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		5e-05
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		5e-05
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		6e-05
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		6e-05
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		6e-05
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		6e-05
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		6e-05
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		7e-05
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		7e-05
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		7e-05
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		7e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		7e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		9e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		1e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		1e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		1e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		1e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		1e-04
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-04
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-04
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		1e-04
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-04
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		1e-04
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-04
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-04
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		2e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		2e-04
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-04
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		2e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-04
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		2e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		2e-04
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		2e-04
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		2e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		2e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-04
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		3e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		3e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		3e-04
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-04
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		3e-04
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		3e-04
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		3e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-04
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		4e-04
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		4e-04
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		4e-04
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		4e-04
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		4e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-04
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		4e-04
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		4e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-04
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-04
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		4e-04
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-04
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		4e-04
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		5e-04
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		5e-04
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		5e-04
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		5e-04
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		5e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		6e-04
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		6e-04
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		6e-04
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		6e-04
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		6e-04
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		6e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		6e-04
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		6e-04
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		6e-04
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		6e-04
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		6e-04
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		6e-04
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		6e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		6e-04
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		6e-04
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		6e-04
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		6e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		6e-04
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		6e-04
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		7e-04
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		7e-04
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		7e-04
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		7e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		7e-04
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		7e-04
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		7e-04
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		7e-04
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		7e-04
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		7e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		7e-04
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		7e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		8e-04
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		8e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		8e-04
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		8e-04
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		9e-04
3hec_A	348	P38 In Complex With Imatinib Length = 348		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  152 bits (383), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 157/541 (29%), Positives = 239/541 (44%), Gaps = 84/541 (15%)
Query: 140 PSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKV 199
           P +     L+ LD S N+LSG  S      + +  + + S++  G +P      L YL  
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS- 272
Query: 200 LFLAKNMFHGQIPLALS-KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE 258
             LA+N F G+IP  LS  C  L  L+L      GA+P    + ++L  ++L +N   GE
Sbjct: 273 --LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 259 IPHE-IGYLPXXXXXXXXXXXXXXXXPAAIFNMS-TVKKIYLLDNSLLGSFSLGIDLSLP 316
           +P + +  +                 P ++ N+S ++  + L  N+  G         LP
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-------LP 383
Query: 317 NV--------ERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG------- 361
           N+        + L L  N F+G IP  ++N S+LV L +  N  SG IP+++G       
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 362 --LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQXXXXXXXXXXXXXEGNKLTGS 419
             L  N L+G +P  +  +  +LE + +   ++ G IP                N+LTG 
Sbjct: 444 LKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 420 IPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCL------- 472
           IP   GRL+ L  L L  N  +G+IP +L     L  L L  N F+G+IP+ +       
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 473 -------------------------GNL---TSLRSPDLGSNRLTSVLPS---------- 494
                                    GNL     +RS  L  NRL++  P           
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGH 620
Query: 495 ---TFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQ 551
              TF N   ++F D+S N L G +  +IG++  +  +NL  N+ SG IP  +GDL+ L 
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 552 NISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGL 608
            + L+ N L+G IP++      LTE++LS N L G IP  G F  F    F+ N  LCG 
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 740
Query: 609 P 609
           P
Sbjct: 741 P 741

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 157/541 (29%), Positives = 239/541 (44%), Gaps = 84/541 (15%)
Query: 140 PSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKV 199
           P +     L+ LD S N+LSG  S      + +  + + S++  G +P      L YL  
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS- 275
Query: 200 LFLAKNMFHGQIPLALS-KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE 258
             LA+N F G+IP  LS  C  L  L+L      GA+P    + ++L  ++L +N   GE
Sbjct: 276 --LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 259 IPHE-IGYLPXXXXXXXXXXXXXXXXPAAIFNMS-TVKKIYLLDNSLLGSFSLGIDLSLP 316
           +P + +  +                 P ++ N+S ++  + L  N+  G         LP
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-------LP 386
Query: 317 NV--------ERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG------- 361
           N+        + L L  N F+G IP  ++N S+LV L +  N  SG IP+++G       
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 362 --LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQXXXXXXXXXXXXXEGNKLTGS 419
             L  N L+G +P  +  +  +LE + +   ++ G IP                N+LTG 
Sbjct: 447 LKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 420 IPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCL------- 472
           IP   GRL+ L  L L  N  +G+IP +L     L  L L  N F+G+IP+ +       
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 473 -------------------------GNL---TSLRSPDLGSNRLTSVLPS---------- 494
                                    GNL     +RS  L  NRL++  P           
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGH 623
Query: 495 ---TFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQ 551
              TF N   ++F D+S N L G +  +IG++  +  +NL  N+ SG IP  +GDL+ L 
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 552 NISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGL 608
            + L+ N L+G IP++      LTE++LS N L G IP  G F  F    F+ N  LCG 
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743
Query: 609 P 609
           P
Sbjct: 744 P 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 30/224 (13%)
Query: 414 NKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA------------- 460
           N L G IP    +L +L  LY+    ++G+IPD L  +  L TL  +             
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 461 -----------GNKFSGSIPSCLGNLTSL-RSPDLGSNRLTSVLPSTFWNLKDILFFDLS 508
                      GN+ SG+IP   G+ + L  S  +  NRLT  +P TF NL ++ F DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 509 SNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPE-- 566
            N L+G  S+  G+ +    I+L++N+ + D+   +G  K+L  + L  N + G +P+  
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 567 -SFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLP 609
               +L  LN+SFN L GEIP+GG    F   ++  N+ LCG P
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 661 TLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALK-SFE 719
            L+RFS ++L  A++ FS +N++G G FG VYKGRL DG  VA+K   +      +  F+
Sbjct: 24  QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQ 83
Query: 720 AECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCS---LNIFDKLN 765
            E E++    HRN ++    C     + L            CL     S   L+   +  
Sbjct: 84  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 143
Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           I +  A  L YLH      +IH D+K  N+           DFG+ +L+      +    
Sbjct: 144 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAV 203
Query: 816 LVTIGYMAPGLL 827
             TIG++AP  L
Sbjct: 204 RGTIGHIAPEYL 215

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 25/192 (13%)
Query: 661 TLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALK-SFE 719
            L+RFS ++L  A++ F  +N++G G FG VYKGRL DG  VA+K   +      +  F+
Sbjct: 16  QLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQ 75
Query: 720 AECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCS---LNIFDKLN 765
            E E++    HRN ++    C     + L            CL     S   L+   +  
Sbjct: 76  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 135
Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           I +  A  L YLH      +IH D+K  N+           DFG+ +L+      +    
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAV 195
Query: 816 LVTIGYMAPGLL 827
              IG++AP  L
Sbjct: 196 RGXIGHIAPEYL 207

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 141
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAP 186

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 81  REPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 137
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 138 LAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAP 182

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 141
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 186

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 25  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 83
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 84  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 140
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 141 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 185

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 141
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 186

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 85  REPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 141
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 186

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 34  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 92
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL        IH D
Sbjct: 93  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYL---EKKNFIHRD 149
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 150 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 194

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 138
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 139 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 183

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL        IH D
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYL---EKKNFIHRD 138
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 139 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 183

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 81  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 137
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 138 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAP 182

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G FG VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 19  LGGGQFGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH D
Sbjct: 78  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRD 134
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 135 LAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAP 179

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 138
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 139 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAP 183

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH D
Sbjct: 78  REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRD 134
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 135 LAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAP 179

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH D
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRD 141
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 186

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH D
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRD 136
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCT 325
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH +
Sbjct: 326 REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRN 382
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 383 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 427

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH D
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRD 136
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH D
Sbjct: 80  REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRD 136
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH D
Sbjct: 80  REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRD 136
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 136
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   +N    L +   ++SA+EYL   +    IH D
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRD 136
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 31/182 (17%)
Query: 671 FRATEKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQ--NCAMALKSFEAECEVMKN 727
           F++ EK+    L+G GS+G V K R  D G  VAIK F +  +  M  K    E +++K 
Sbjct: 21  FQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQ 80
Query: 728 IRHRNHVKRISSCSNED-----FKALDCLHSTNCSLNIFDKLNIMIDVASALEYLH---- 778
           +RH N V  +  C  +      F+ +D  H+    L +F      +D     +YL     
Sbjct: 81  LRHENLVNLLEVCKKKKRWYLVFEFVD--HTILDDLELFPN---GLDYQVVQKYLFQIIN 135
Query: 779 ---FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPG 825
              F HS  +IH D+KP+N+           DFG  R L     +   E + T  Y AP 
Sbjct: 136 GIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDE-VATRWYRAPE 194
Query: 826 LL 827
           LL
Sbjct: 195 LL 196

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH D
Sbjct: 78  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRD 134
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 135 LAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKFPIKWTAP 179

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           IG GSFG+V++   H G +VA+K+  +    A  +  F  E  +MK +RH N V  + + 
Sbjct: 45  IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 741 SNEDFKAL-----------DCLHSTNC--SLNIFDKLNIMIDVASALEYLHFSHSTPVIH 787
           +     ++             LH +     L+   +L++  DVA  + YLH + + P++H
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVH 162
Query: 788 CDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            DLK  N          V DFG+ R L     +       T  +MAP +L
Sbjct: 163 RDLKSPNLLVDKKYTVKVCDFGLSR-LKASXFLXSKXAAGTPEWMAPEVL 211

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG GSFG+VYKG+ H  + V I           ++F  E  V++  RH N +  +   + 
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK 103
Query: 743 EDFKALD--C--------LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
           ++   +   C        LH       +F  ++I    A  ++YL   H+  +IH D+K 
Sbjct: 104 DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYL---HAKNIIHRDMKS 160
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+  + +      Q E    ++ +MAP ++
Sbjct: 161 NNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVI 206

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 683 IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCS 741
           +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N V+ +  C+
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCT 286
Query: 742 NE-------DFKA----LDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCD 789
            E       +F      LD L   N   ++    L +   ++SA+EYL   +    IH +
Sbjct: 287 REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRN 343
Query: 790 LKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           L  +N          V DFG+ RL+TGD           I + AP
Sbjct: 344 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 388

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 658 KSKTL-RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALK 716
           + KTL RR S  D      + +    IG GSFG+VYKG+ H  + V +          L+
Sbjct: 18  RMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQ 77
Query: 717 SFEAECEVMKNIRHRNHVKRISSCSN----------EDFKALDCLHSTNCSLNIFDKLNI 766
           +F+ E  V++  RH N +  +   +           E       LH       +   ++I
Sbjct: 78  AFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDI 137
Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
               A  ++YL   H+  +IH DLK  N+F          DFG+  + +      Q E L
Sbjct: 138 ARQTAQGMDYL---HAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQL 194
Query: 817 V-TIGYMAPGLL 827
             +I +MAP ++
Sbjct: 195 SGSILWMAPEVI 206

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVF-------HQNCAMALKSFEAECEV 724
           A  +   E  IG G FG V+KGRL  D   VAIK                 + F+ E  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 725 MKNIRHRNHVK-------------RISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVA 771
           M N+ H N VK                 C +   + LD  H    S+    KL +M+D+A
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSV----KLRLMLDIA 132
Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF 796
             +EY+  + + P++H DL+  N+F
Sbjct: 133 LGIEYMQ-NQNPPIVHRDLRSPNIF 156

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 669 DLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI 728
           DL  AT  F  + LIG G FG VYKG L DG +VA+K      +  ++ FE E E +   
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 729 RHRNHVKRISSCSNEDFKALDCLHSTN--------------CSLNIFDKLNIMIDVASAL 774
           RH + V  I  C   +   L   +  N               S++   +L I I  A  L
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 775 EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTETLVTIGYMA 823
            YL   H+  +IH D+K  N+           DFGI +  T  D++ +      T+GY+ 
Sbjct: 153 HYL---HTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYID 209
Query: 824 P 824
           P
Sbjct: 210 P 210

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVF-------HQNCAMALKSFEAECEV 724
           A  +   E  IG G FG V+KGRL  D   VAIK                 + F+ E  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 725 MKNIRHRNHVK-------------RISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVA 771
           M N+ H N VK                 C +   + LD  H    S+    KL +M+D+A
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSV----KLRLMLDIA 132
Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF 796
             +EY+  + + P++H DL+  N+F
Sbjct: 133 LGIEYMQ-NQNPPIVHRDLRSPNIF 156

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVF-------HQNCAMALKSFEAECEV 724
           A  +   E  IG G FG V+KGRL  D   VAIK                 + F+ E  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 725 MKNIRHRNHVK-------------RISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVA 771
           M N+ H N VK                 C +   + LD  H    S+    KL +M+D+A
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSV----KLRLMLDIA 132
Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF 796
             +EY+  + + P++H DL+  N+F
Sbjct: 133 LGIEYMQ-NQNPPIVHRDLRSPNIF 156

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 658 KSKTL-RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALK 716
           + KTL RR S  D      + +    IG GSFG+VYKG+ H  + V +          L+
Sbjct: 17  RMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQ 76
Query: 717 SFEAECEVMKNIRHRNHVKRISSCSN----------EDFKALDCLHSTNCSLNIFDKLNI 766
           +F+ E  V++  RH N +  +   +           E       LH       +   ++I
Sbjct: 77  AFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDI 136
Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
               A  ++YL   H+  +IH DLK  N+F          DFG+  + +      Q E L
Sbjct: 137 ARQTAQGMDYL---HAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQL 193
Query: 817 V-TIGYMAPGLL 827
             +I +MAP ++
Sbjct: 194 SGSILWMAPEVI 205

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +  +   + 
Sbjct: 20  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 79
Query: 743 ----------EDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
                     E       LH++     +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 80  PQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYL---HAKSIIHRDLKS 136
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+  + +      Q E L  +I +MAP ++
Sbjct: 137 NNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI 182

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +  +   + 
Sbjct: 21  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 80
Query: 743 ----------EDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
                     E       LH       +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 81  PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL---HAKSIIHRDLKS 137
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+  + +      Q E L  +I +MAP ++
Sbjct: 138 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI 183

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +  +   + 
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 75
Query: 743 EDFKALD--C--------LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
                +   C        LH       +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 76  PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL---HAKSIIHRDLKS 132
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+  + +      Q E L  +I +MAP ++
Sbjct: 133 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI 178

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E+     LIG G FG VY GR H  + + +    ++    LK+F+ E    +  RH N V
Sbjct: 33  EQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVV 92
Query: 735 KRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
             + +C +    A+             +      L++     I  ++   + YL   H+ 
Sbjct: 93  LFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYL---HAK 149
Query: 784 PVIHCDLKPKNVF---------DFGI----GRLLTGDRS 809
            ++H DLK KNVF         DFG+    G L  G R 
Sbjct: 150 GILHKDLKSKNVFYDNGKVVITDFGLFSISGVLQAGRRE 188

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +  +   + 
Sbjct: 18  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 77
Query: 743 ----------EDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
                     E       LH       +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 78  PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL---HAKSIIHRDLKS 134
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+  + +      Q E L  +I +MAP ++
Sbjct: 135 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI 180

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 30/171 (17%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           IG GSFG+V++   H G +VA+K+  +    A  +  F  E  +MK +RH N V  + + 
Sbjct: 45  IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 741 SNEDFKAL-----------DCLHSTNC--SLNIFDKLNIMIDVASALEYLHFSHSTPVIH 787
           +     ++             LH +     L+   +L++  DVA  + YLH + + P++H
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVH 162
Query: 788 CDLKPKN----------VFDFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            +LK  N          V DFG+ RL     + + +++   T  +MAP +L
Sbjct: 163 RNLKSPNLLVDKKYTVKVCDFGLSRLKAS--TFLSSKSAAGTPEWMAPEVL 211

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +  +   + 
Sbjct: 21  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 80
Query: 743 ----------EDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
                     E       LH       +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 81  PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL---HAKSIIHRDLKS 137
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+  + +      Q E L  +I +MAP ++
Sbjct: 138 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI 183

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV-------- 734
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +        
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA 75
Query: 735 --KRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
               I +   E       LH       +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 76  PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL---HAKSIIHRDLKS 132
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+  + +      Q E L  +I +MAP ++
Sbjct: 133 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI 178

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 658 KSKTL-RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALK 716
           + KTL RR S  D      + +    IG GSFG+VYKG+ H  + V +          L+
Sbjct: 18  RMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQ 77
Query: 717 SFEAECEVMKNIRHRNHVKRISSCSN----------EDFKALDCLHSTNCSLNIFDKLNI 766
           +F+ E  V++  RH N +  +   +           E       LH       +   ++I
Sbjct: 78  AFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDI 137
Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
               A  ++YL   H+  +IH DLK  N+F          DFG+    +      Q E L
Sbjct: 138 ARQTAQGMDYL---HAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQL 194
Query: 817 V-TIGYMAPGLL 827
             +I +MAP ++
Sbjct: 195 SGSILWMAPEVI 206

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 658 KSKTL-RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALK 716
           + KTL RR S  D      + +    IG GSFG+VYKG+ H  + V +          L+
Sbjct: 10  RMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQ 69
Query: 717 SFEAECEVMKNIRHRNHVKRISSCSN----------EDFKALDCLHSTNCSLNIFDKLNI 766
           +F+ E  V++  RH N +  +   +           E       LH       +   ++I
Sbjct: 70  AFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDI 129
Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
               A  ++YL   H+  +IH DLK  N+F          DFG+    +      Q E L
Sbjct: 130 ARQTAQGMDYL---HAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQL 186
Query: 817 V-TIGYMAPGLL 827
             +I +MAP ++
Sbjct: 187 SGSILWMAPEVI 198

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +  +   + 
Sbjct: 32  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 91
Query: 743 ----------EDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
                     E       LH++     +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 92  PQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYL---HAKSIIHRDLKS 148
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+    +      Q E L  +I +MAP ++
Sbjct: 149 NNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI 194

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 34/184 (18%)
Query: 671 FRATEKFSKENL-------IGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAEC 722
           F++ +K+  E         +G G +G VY G      + VA+K   ++  M ++ F  E 
Sbjct: 21  FQSMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKED-TMEVEEFLKEA 79
Query: 723 EVMKNIRHRNHVKRISSCSNE-------DFKA----LDCLHSTNC-SLNIFDKLNIMIDV 770
            VMK I+H N V+ +  C+ E       ++      LD L   N   +     L +   +
Sbjct: 80  AVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQI 139
Query: 771 ASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIG 820
           +SA+EYL   +    IH DL  +N          V DFG+ RL+TGD           I 
Sbjct: 140 SSAMEYLEKKN---FIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIK 196
Query: 821 YMAP 824
           + AP
Sbjct: 197 WTAP 200

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 656 GGKSKTLRRFSYQDLFRA-TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMA 714
           G +++  ++  ++D +    E       +G G FG V+ G  +   +VA+K   Q  +M+
Sbjct: 1   GSQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMS 59
Query: 715 LKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK--------LNI 766
             +F AE  +MK ++H+  V+  +  + E    +   +  N SL  F K        +N 
Sbjct: 60  PDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYII-TEYMENGSLVDFLKTPSGIKLTINK 118
Query: 767 MIDVASAL-EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           ++D+A+ + E + F      IH DL+  N+           DFG+ RL+  +    +   
Sbjct: 119 LLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGA 178
Query: 816 LVTIGYMAP 824
              I + AP
Sbjct: 179 KFPIKWTAP 187

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +  +   + 
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 75
Query: 743 ----------EDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
                     E       LH       +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 76  PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL---HAKSIIHRDLKS 132
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+    +      Q E L  +I +MAP ++
Sbjct: 133 NNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI 178

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV-------- 734
           IG GSFG+VYKG+ H  + V +          L++F+ E  V++  RH N +        
Sbjct: 32  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA 91
Query: 735 --KRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP 792
               I +   E       LH++     +   ++I    A  ++YL   H+  +IH DLK 
Sbjct: 92  PQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYL---HAKSIIHRDLKS 148
Query: 793 KNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
            N+F          DFG+    +      Q E L  +I +MAP ++
Sbjct: 149 NNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI 194

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 669 DLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI 728
           DL  AT  F  + LIG G FG VYKG L DG +VA+K      +  ++ FE E E +   
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 729 RHRNHVKRISSCSNEDFKALDCLHSTN--------------CSLNIFDKLNIMIDVASAL 774
           RH + V  I  C   +   L   +  N               S++   +L I I  A  L
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 775 EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTETLVTIGYMA 823
            YL   H+  +IH D+K  N+           DFGI +  T   ++ +      T+GY+ 
Sbjct: 153 HYL---HTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYID 209
Query: 824 P 824
           P
Sbjct: 210 P 210

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 30  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 88
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 89  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 147
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 148 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAP 188

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 85
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 86  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 144
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 145 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAP 185

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 80  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 138
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAP 179

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 76
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S  C L+          +L  ++D+A+ +   + +      +
Sbjct: 77  QLYAVVSEEPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 136
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 184

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 85
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 86  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 144
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 145 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 185

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 31  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 89
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 90  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 148
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 149 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 189

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 26  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 84
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 85  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 143
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 144 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 184

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 76
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S  C L+          +L  ++D+A+ +   + +      +
Sbjct: 77  QLYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 136
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 184

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVF--HQNCAMALKSFEAECEVMKNIRHR 731
           EK+ K   IG GS+G V+K R  D G  VAIK F   ++  +  K    E  ++K ++H 
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHP 62
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMID-------VASALEYLHFSHSTP 784
           N V  +     +    L   +  +  L+  D+    +            L+ ++F H   
Sbjct: 63  NLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHN 122
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            IH D+KP+N+           DFG  RLLTG       E + T  Y +P LL
Sbjct: 123 CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDE-VATRWYRSPELL 174

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISS 739
           E  +G G FG V+    +   +VA+K   +  +M++++F AE  VMK ++H   VK  + 
Sbjct: 193 EKKLGAGQFGEVWMATYNKHTKVAVKTM-KPGSMSVEAFLAEANVMKTLQHDKLVKLHAV 251
Query: 740 CSNE------DFKA----LDCLHSTNCSLNIFDKLNIMIDVASAL-EYLHFSHSTPVIHC 788
            + E      +F A    LD L S   S     KL   ID ++ + E + F      IH 
Sbjct: 252 VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKL---IDFSAQIAEGMAFIEQRNYIHR 308
Query: 789 DLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           DL+  N+           DFG+ R++  +    +      I + AP
Sbjct: 309 DLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 354

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 43/187 (22%)
Query: 677 FSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAEC---EVMKNIRHRN 732
           +  +  +G G FG V +    D G +VAIK   Q   ++ K+ E  C   ++MK + H N
Sbjct: 17  WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE--LSPKNRERWCLEIQIMKKLNHPN 74
Query: 733 HVKR-------------------ISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASA 773
            V                     +  C   D +         C L       ++ D++SA
Sbjct: 75  VVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSA 134
Query: 774 LEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLVTIG 820
           L YLH +    +IH DLKP+N             + D G  + L  D+  + TE + T+ 
Sbjct: 135 LRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL--DQGELCTEFVGTLQ 189
Query: 821 YMAPGLL 827
           Y+AP LL
Sbjct: 190 YLAPELL 196

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK IRH   V
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKIRHEKLV 76
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 77  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 136
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 184

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 43/187 (22%)
Query: 677 FSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAEC---EVMKNIRHRN 732
           +  +  +G G FG V +    D G +VAIK   Q   ++ K+ E  C   ++MK + H N
Sbjct: 16  WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE--LSPKNRERWCLEIQIMKKLNHPN 73
Query: 733 HVKR-------------------ISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASA 773
            V                     +  C   D +         C L       ++ D++SA
Sbjct: 74  VVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSA 133
Query: 774 LEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLVTIG 820
           L YLH +    +IH DLKP+N             + D G  + L  D+  + TE + T+ 
Sbjct: 134 LRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL--DQGELCTEFVGTLQ 188
Query: 821 YMAPGLL 827
           Y+AP LL
Sbjct: 189 YLAPELL 195

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 185 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-NMSPEAFLQEAQVMKKLRHEKLV 243
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 244 QLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 303
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+GRL+  +    +      I + AP
Sbjct: 304 HRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKWTAP 351

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           ++G G++G VY GR L + + +AIK   +  +   +    E  + K+++H+N V+ + S 
Sbjct: 15  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSF 74
Query: 741 SNEDFKALDCLHSTNCSLNIF----------DKLNIMIDVASALEYLHFSHSTPVIHCDL 790
           S   F  +        SL+            ++  I       LE L + H   ++H D+
Sbjct: 75  SENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDI 134
Query: 791 KPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           K  NV            DFG  + L G     +T T  T+ YMAP ++
Sbjct: 135 KGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFT-GTLQYMAPEII 181

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 8   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 66
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 67  QLYAVVSEEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYV 126
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 127 HRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAP 174

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 27/172 (15%)
Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V+ 
Sbjct: 28  FLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 84
Query: 737 ISSCSNE-------DFKALDC----LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPV 785
              C+ +       ++ A  C    L            L +  DV  A+EYL    S   
Sbjct: 85  YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYL---ESKQF 141
Query: 786 IHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           +H DL  +N          V DFG+ R +  D       +   + +  P +L
Sbjct: 142 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFPVRWSPPEVL 193

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 80  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 138
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAP 179

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 22  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 80
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 81  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 139
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 140 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAP 180

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 23  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 81
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 82  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 140
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 141 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAP 181

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 10  ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 70  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 118
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 119 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 177
Query: 823 APGLL 827
           AP +L
Sbjct: 178 APEIL 182

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 30/166 (18%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE   +  ++G G+FG+VYKG  + +G    I VAIK+ ++     A   F  E  
Sbjct: 34  ILKETE-LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 92
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           +M ++ H + V+ +  C +   + +  L    C L    +          LN  + +A  
Sbjct: 93  IMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKG 152
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS 809
           + YL       ++H DL  +NV           DFG+ RLL GD  
Sbjct: 153 MMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEK 195

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----LNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 62  NIVK-----------LLDVIHTENKLYLVFEHVHQDLKTFMDASALTGIPLPLIKSYLFQ 110
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 169
Query: 823 APGLL 827
           AP +L
Sbjct: 170 APEIL 174

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 30/145 (20%)
Query: 683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKS-FEAECEVMKNIRHRNHVKRISSC 740
           IG G+FG V+ GRL  D   VA+K   +     LK+ F  E  ++K   H N V+ I  C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 741 SNE-------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIH 787
           + +             DF  L  L +    L +   L ++ D A+ +EYL    S   IH
Sbjct: 182 TQKQPIYIVMELVQGGDF--LTFLRTEGARLRVKTLLQMVGDAAAGMEYL---ESKCCIH 236
Query: 788 CDLKPKN----------VFDFGIGR 802
            DL  +N          + DFG+ R
Sbjct: 237 RDLAARNCLVTEKNVLKISDFGMSR 261

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 30/145 (20%)
Query: 683 IGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKS-FEAECEVMKNIRHRNHVKRISSC 740
           IG G+FG V+ GRL  D   VA+K   +     LK+ F  E  ++K   H N V+ I  C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 741 SNE-------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIH 787
           + +             DF  L  L +    L +   L ++ D A+ +EYL    S   IH
Sbjct: 182 TQKQPIYIVMELVQGGDF--LTFLRTEGARLRVKTLLQMVGDAAAGMEYL---ESKCCIH 236
Query: 788 CDLKPKN----------VFDFGIGR 802
            DL  +N          + DFG+ R
Sbjct: 237 RDLAARNCLVTEKNVLKISDFGMSR 261

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 27/172 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 76
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFDK------------LNIMIDVASALEYLHFSHS 782
           +  +  S E    + C + +  SL  F K            +++   +AS + Y+   + 
Sbjct: 77  QLYAVVSEEPIYIV-CEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN- 134
Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
              +H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 135 --YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 184

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           ++G G++G VY GR L + + +AIK   +  +   +    E  + K+++H+N V+ + S 
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSF 88
Query: 741 SNEDFKALDCLHSTNCSLNIF----------DKLNIMIDVASALEYLHFSHSTPVIHCDL 790
           S   F  +        SL+            ++  I       LE L + H   ++H D+
Sbjct: 89  SENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDI 148
Query: 791 KPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           K  NV            DFG  + L G     +T T  T+ YMAP ++
Sbjct: 149 KGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFT-GTLQYMAPEII 195

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 63  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 170
Query: 823 APGLL 827
           AP +L
Sbjct: 171 APEIL 175

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 10  ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 70  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 118
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 119 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 177
Query: 823 APGLL 827
           AP +L
Sbjct: 178 APEIL 182

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 80  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 138
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 179

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 16  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 74
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 75  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 133
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 134 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 174

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 63  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 112 LLQGLSFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 170
Query: 823 APGLL 827
           AP +L
Sbjct: 171 APEIL 175

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 62  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 110
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ 
Sbjct: 111 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLW 169
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 170 YRAPEIL 176

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 63  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 170
Query: 823 APGLL 827
           AP +L
Sbjct: 171 APEIL 175

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 27/172 (15%)
Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V+ 
Sbjct: 28  FLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 84
Query: 737 ISSCSNE-------DFKALDC----LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPV 785
              C+ +       ++ A  C    L            L +  DV  A+EYL    S   
Sbjct: 85  YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYL---ESKQF 141
Query: 786 IHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           +H DL  +N          V DFG+ R +  D       +   + +  P +L
Sbjct: 142 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVL 193

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 11  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 69
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 70  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYV 129
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 130 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 177

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 9   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 67
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 68  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 127
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 128 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 175

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 62  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 169
Query: 823 APGLL 827
           AP +L
Sbjct: 170 APEIL 174

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 63  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 170
Query: 823 APGLL 827
           AP +L
Sbjct: 171 APEIL 175

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 62  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 169
Query: 823 APGLL 827
           AP +L
Sbjct: 170 APEIL 174

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 76
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 77  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 136
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 184

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G  G V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 21  LGAGQAGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH DL+  
Sbjct: 80  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAA 138
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+       +      I + AP
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKWTAP 179

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 7   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 67  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 115
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 116 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 174
Query: 823 APGLL 827
           AP +L
Sbjct: 175 APEIL 179

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 15  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 73
Query: 735 KRISSCSNEDF----------KALDCLH-STNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +  +  S E              LD L   T   L +   +++   +AS + Y+   +  
Sbjct: 74  QLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMN-- 131
Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             +H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 132 -YVHRDLRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAP 181

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 668 QDLFRATEKFSKENL-----IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAEC 722
           Q L +   +  +E+L     +G G FG V+ G  +    VAIK       M+ ++F  E 
Sbjct: 255 QGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEA 313
Query: 723 EVMKNIRHRNHVKRISSCSNEDF----------KALDCLH-STNCSLNIFDKLNIMIDVA 771
           +VMK +RH   V+  +  S E              LD L   T   L +   +++   +A
Sbjct: 314 QVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIA 373
Query: 772 SALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGY 821
           S + Y+   +    +H DL+  N          V DFG+ RL+  +    +      I +
Sbjct: 374 SGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 430
Query: 822 MAP 824
            AP
Sbjct: 431 TAP 433

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+    +   +VA+K      +M++++F AE  VMK ++H   V
Sbjct: 15  ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLV 73
Query: 735 KRISSCSNE------DFKA----LDCLHSTNCSLNIFDKLNIMIDVASAL-EYLHFSHST 783
           K  +  + E      +F A    LD L S   S     KL   ID ++ + E + F    
Sbjct: 74  KLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKL---IDFSAQIAEGMAFIEQR 130
Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             IH DL+  N+           DFG+ R++  +    +      I + AP
Sbjct: 131 NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 181

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 31/184 (16%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVF-----HQNCAMALKSFEAECEVMK 726
           AT ++     IGVG++G+VYK R  H G  VA+K        +   ++     A    ++
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 727 NIRHRNHVKRISSCS----NEDFKALDCLHSTNCSLNIF-DKL--------NIMIDVASA 773
              H N V+ +  C+    + + K        +  L  + DK          I   +   
Sbjct: 62  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMA 823
           L  L F H+  ++H DLKP+N+           DFG+ R+ +    M     +VT+ Y A
Sbjct: 122 LRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS--YQMALAPVVVTLWYRA 179
Query: 824 PGLL 827
           P +L
Sbjct: 180 PEVL 183

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 15  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 73
Query: 735 KRISSCSNEDF----------KALDCLH-STNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +  +  S E              LD L   T   L +   +++   +AS + Y+   +  
Sbjct: 74  QLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMN-- 131
Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             +H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 132 -YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 181

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 242
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 243 QLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYV 302
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 303 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 350

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 242
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 243 QLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYV 302
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 303 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 350

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 76
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 77  QLYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 136
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAP 184

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 242
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 243 QLYAVVSEEPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYV 302
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 303 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 350

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 30/166 (18%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE   +  ++G G+FG+VYKG  + +G    I VAIK+ ++     A   F  E  
Sbjct: 11  ILKETE-LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 69
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           +M ++ H + V+ +  C +   + +  L    C L    +          LN  + +A  
Sbjct: 70  IMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKG 129
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS 809
           + YL       ++H DL  +NV           DFG+ RLL GD  
Sbjct: 130 MMYL---EERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEK 172

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 677 FSKENLIGVGSFGSVYKGR-LHDGIEVAIK---VFHQNCAMALKSFEAECEVMKNIRHRN 732
           F  E  IG G F  VY+   L DG+ VA+K   +F    A A      E +++K + H N
Sbjct: 34  FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN 93
Query: 733 HVKRISSC--SNEDFKALDCLHSTNCSLNI--FDKLNIMIDVASALEY-------LHFSH 781
            +K  +S    NE    L+   + + S  I  F K   +I   +  +Y       L   H
Sbjct: 94  VIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH 153
Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           S  V+H D+KP NVF          D G+GR  +   +   +  + T  YM+P
Sbjct: 154 SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS-LVGTPYYMSP 205

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 38/176 (21%)
Query: 683 IGVGSFGSVY-KGRLHDGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           +G G+FG V+       G+E  IK  +++   + ++  EAE EV+K++ H N +K     
Sbjct: 30  LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVF 89
Query: 741 SNEDFKALDCLHSTNCSLNIFDKL----------------NIMIDVASALEYLHFSHSTP 784
             ED+  +  +  T     + +++                 +M  + +AL Y H  H   
Sbjct: 90  --EDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH--- 144
Query: 785 VIHCDLKPKNVF-------------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           V+H DLKP+N+              DFG+  L   D     T    T  YMAP + 
Sbjct: 145 VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH--STNAAGTALYMAPEVF 198

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 76
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 77  QLYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 136
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 184

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 31/184 (16%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVF-----HQNCAMALKSFEAECEVMK 726
           AT ++     IGVG++G+VYK R  H G  VA+K        +   ++     A    ++
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 727 NIRHRNHVKRISSCS----NEDFKALDCLHSTNCSLNIF-DKL--------NIMIDVASA 773
              H N V+ +  C+    + + K        +  L  + DK          I   +   
Sbjct: 62  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMA 823
           L  L F H+  ++H DLKP+N+           DFG+ R+ +    M     +VT+ Y A
Sbjct: 122 LRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS--YQMALDPVVVTLWYRA 179
Query: 824 PGLL 827
           P +L
Sbjct: 180 PEVL 183

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNI-MIDVASA--------------- 773
           H N VK            LD +H+ N    +F+ L++ + D   A               
Sbjct: 64  HPNIVK-----------LLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYL 112
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 113 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 171
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 172 YRAPEIL 178

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 34/187 (18%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH--------QNCAMALKSFEAECE 723
           AT ++     IGVG++G+VYK R  H G  VA+K               ++     A   
Sbjct: 7   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLR 66
Query: 724 VMKNIRHRNHVKRISSCS----NEDFKALDCLHSTNCSLNIF-DKL--------NIMIDV 770
            ++   H N V+ +  C+    + + K        +  L  + DK          I   +
Sbjct: 67  RLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLM 126
Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L  L F H+  ++H DLKP+N+           DFG+ R+ +    M  T  +VT+ 
Sbjct: 127 RQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS--YQMALTPVVVTLW 184
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 185 YRAPEVL 191

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNI-MIDVASA--------------- 773
           H N VK            LD +H+ N    +F+ L++ + D   A               
Sbjct: 63  HPNIVK-----------LLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYL 111
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 112 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 170
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 171 YRAPEIL 177

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 64  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYL 112
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 113 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 171
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 172 YRAPEIL 178

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 77/187 (41%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDV---ASAL------------ 774
           H N VK            LD +H+ N    +F+ L++ +     ASAL            
Sbjct: 64  HPNIVK-----------LLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYL 112
Query: 775 ----EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
               + L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 113 FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 171
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 172 YRAPEIL 178

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 77/187 (41%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDV---ASAL------------ 774
           H N VK            LD +H+ N    +F+ L++ +     ASAL            
Sbjct: 62  HPNIVK-----------LLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYL 110
Query: 775 ----EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
               + L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 111 FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 169
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 170 YRAPEIL 176

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 76
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 77  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 136
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL   N+           DFG+ RL+  +    +      I + AP
Sbjct: 137 HRDLAAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 184

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  ++  +VA+K       M++++F  E  +MK ++H   V+  +  + 
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTK 78
Query: 743 E-------DFKA----LDCLHSTNCSLNIFDKL-NIMIDVASALEYLHFSHSTPVIHCDL 790
           E       +F A    LD L S      +  KL +    +A  + Y+   +    IH DL
Sbjct: 79  EEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHRDL 135
Query: 791 KPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           +  NV           DFG+ R++  +    +      I + AP
Sbjct: 136 RAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 179

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 31/184 (16%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVF-----HQNCAMALKSFEAECEVMK 726
           AT ++     IGVG++G+VYK R  H G  VA+K        +   ++     A    ++
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 727 NIRHRNHVKRISSCS----NEDFKALDCLHSTNCSLNIF-DKL--------NIMIDVASA 773
              H N V+ +  C+    + + K        +  L  + DK          I   +   
Sbjct: 62  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMA 823
           L  L F H+  ++H DLKP+N+           DFG+ R+ +   ++     +VT+ Y A
Sbjct: 122 LRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFP--VVVTLWYRA 179
Query: 824 PGLL 827
           P +L
Sbjct: 180 PEVL 183

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V+  +  + 
Sbjct: 17  LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 75
Query: 743 EDFKALDCLHSTNCSLNIFDK--------LNIMIDVASAL-EYLHFSHSTPVIHCDLKPK 793
           E    +   +  N SL  F K        +N ++D+A+ + E + F      IH +L+  
Sbjct: 76  EPIYII-TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRNLRAA 134
Query: 794 NVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           N+           DFG+ RL+  +    +      I + AP
Sbjct: 135 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 175

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE   K  ++G G+FG+VYKG  + DG    I VAIKV  +N +  A K    E  
Sbjct: 13  ILKETE-LRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAY 71
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIF----------DKLNIMIDVASA 773
           VM  +      + +  C     + +  L    C L+            D LN  + +A  
Sbjct: 72  VMAGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAKG 131
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ RLL  D +    +   V I +M
Sbjct: 132 MSYL---EDVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWM 188
Query: 823 A 823
           A
Sbjct: 189 A 189

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 5   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 65  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 113
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 114 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 172
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 173 YRAPEIL 179

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGR--LHDGIEVAIKVFHQNCAMALKSFE-AECEVMKNIRHR 731
           E F K   IG G++G VYK R  L   +    K+        + S    E  ++K + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 63  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 170
Query: 823 APGLL 827
           AP +L
Sbjct: 171 APEIL 175

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGR--LHDGIEVAIKVFHQNCAMALKSFE-AECEVMKNIRHR 731
           E F K   IG G++G VYK R  L   +    K+        + S    E  ++K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 62  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G      T  +VT+ Y 
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYTHEVVTLWYR 169
Query: 823 APGLL 827
           AP +L
Sbjct: 170 APEIL 174

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 25/145 (17%)
Query: 680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISS 739
           E  +G G FG V+    +   +VA+K   +  +M++++F AE  VMK ++H   VK  + 
Sbjct: 187 EKKLGAGQFGEVWMATYNKHTKVAVKTM-KPGSMSVEAFLAEANVMKTLQHDKLVKLHAV 245
Query: 740 CSNE------DFKA----LDCLHSTNCSLNIFDKLNIMIDVASAL-EYLHFSHSTPVIHC 788
            + E      +F A    LD L S   S     KL   ID ++ + E + F      IH 
Sbjct: 246 VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKL---IDFSAQIAEGMAFIEQRNYIHR 302
Query: 789 DLKPKNVF----------DFGIGRL 803
           DL+  N+           DFG+ R+
Sbjct: 303 DLRAANILVSASLVCKIADFGLARV 327

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 25/163 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  +   +VAIK       M+ +SF  E ++MK ++H   V+  +  S 
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLKPG-TMSPESFLEEAQIMKKLKHDKLVQLYAVVSE 75
Query: 743 EDF----------KALDCLHS-TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLK 791
           E              LD L      +L + + +++   VA+ + Y+   +    IH DL+
Sbjct: 76  EPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN---YIHRDLR 132
Query: 792 PKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             N+           DFG+ RL+  +    +      I + AP
Sbjct: 133 SANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAP 175

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 64  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 112
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 113 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 171
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 172 YRAPEIL 178

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 63  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 111
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 112 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 170
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 171 YRAPEIL 177

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 61  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 109
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 110 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 168
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 169 YRAPEIL 175

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 64  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 112
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 113 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 171
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 172 YRAPEIL 178

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 62  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 110
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 111 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 169
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 170 YRAPEIL 176

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 61  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 109
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 110 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 168
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 169 YRAPEIL 175

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 63  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 111
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 112 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 170
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 171 YRAPEIL 177

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 61  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 109
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 110 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 168
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 169 YRAPEIL 175

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 61  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 109
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 110 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 168
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 169 YRAPEIL 175

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 64  HPNIVK-----------LLDVIHTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIKSYL 112
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 113 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 171
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 172 YRAPEIL 178

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 62  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ Y 
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLWYR 169
Query: 823 APGLL 827
           AP +L
Sbjct: 170 APEIL 174

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 62  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ Y 
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLWYR 169
Query: 823 APGLL 827
           AP +L
Sbjct: 170 APEIL 174

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 63  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 111
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 112 FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 170
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 171 YRAPEIL 177

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 50/187 (26%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC------AMALKSFEAECEVMKNI 728
           EK+ K   +G G++G VYK +   G  VA+K    +       + A++    E  ++K +
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIR----EISLLKEL 76
Query: 729 RHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKL------------------NIMIDV 770
            H N V  I           D +HS  C   +F+ +                   I I +
Sbjct: 77  HHPNIVSLI-----------DVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYL 125
Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L  +   H   ++H DLKP+N+           DFG+ R   G      T  +VT+ 
Sbjct: 126 YQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAF-GIPVRSYTHEVVTLW 184
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 185 YRAPDVL 191

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 44/185 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + H 
Sbjct: 4   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA-------------- 773
           N VK            LD +H+ N    +F+     L   +D ++               
Sbjct: 64  NIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 774 -LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYM 822
            L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ Y 
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLWYR 171
Query: 823 APGLL 827
           AP +L
Sbjct: 172 APEIL 176

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 62  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 110
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 111 FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 169
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 170 YRAPEIL 176

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEA--ECEVMKNIR 729
           + E F K   IG G++G VYK R    G  VA+K    +         A  E  ++K + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------ 773
           H N VK            LD +H+ N    +F+     L   +D ++             
Sbjct: 61  HPNIVK-----------LLDVIHTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYL 109
Query: 774 ---LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+ L F HS  V+H DLKP+N+           DFG+ R   G         +VT+ 
Sbjct: 110 FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAF-GVPVRTYXHEVVTLW 168
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 169 YRAPEIL 175

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 50/187 (26%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC------AMALKSFEAECEVMKNI 728
           EK+ K   +G G++G VYK +   G  VA+K    +       + A++    E  ++K +
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIR----EISLLKEL 76
Query: 729 RHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKL------------------NIMIDV 770
            H N V  I           D +HS  C   +F+ +                   I I +
Sbjct: 77  HHPNIVSLI-----------DVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYL 125
Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L  +   H   ++H DLKP+N+           DFG+ R   G      T  +VT+ 
Sbjct: 126 YQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAF-GIPVRSYTHEVVTLW 184
Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 185 YRAPDVL 191

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 731 RNHVKRISSCSNEDFKALDCLHSTN-CSLNIFDKLN---------IMIDVASALEYLHFS 780
              VK   +  +++       ++ N C L    K+             ++ SALEYLH  
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGCLLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 149
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +  + V T  Y++P LL
Sbjct: 150 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 206

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           +G G FG V+ G  ++  +VA+K       M++++F  E  +MK ++H   V+  +  + 
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTR 79
Query: 743 E-------DFKA----LDCLHSTNCSLNIFDKL-NIMIDVASALEYLHFSHSTPVIHCDL 790
           E       ++ A    LD L S      +  KL +    +A  + Y+   +    IH DL
Sbjct: 80  EEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHRDL 136
Query: 791 KPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           +  NV           DFG+ R++  +    +      I + AP
Sbjct: 137 RAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 180

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V+ 
Sbjct: 19  FLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 75
Query: 737 ISSCSNEDFKALDCLHSTN-CSLNIFDK----------LNIMIDVASALEYLHFSHSTPV 785
              C+ +    +   +  N C LN   +          L +  DV  A+EYL    S   
Sbjct: 76  YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYL---ESKQF 132
Query: 786 IHCDLKPKN----------VFDFGIGRLLTGD 807
           +H DL  +N          V DFG+ R +  D
Sbjct: 133 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 164

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V+ 
Sbjct: 12  FLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 68
Query: 737 ISSCSNEDFKALDCLHSTN-CSLNIFDK----------LNIMIDVASALEYLHFSHSTPV 785
              C+ +    +   +  N C LN   +          L +  DV  A+EYL    S   
Sbjct: 69  YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYL---ESKQF 125
Query: 786 IHCDLKPKN----------VFDFGIGRLLTGD 807
           +H DL  +N          V DFG+ R +  D
Sbjct: 126 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 157

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V+ 
Sbjct: 13  FLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 69
Query: 737 ISSCSNEDFKALDCLHSTN-CSLNIFDK----------LNIMIDVASALEYLHFSHSTPV 785
              C+ +    +   +  N C LN   +          L +  DV  A+EYL    S   
Sbjct: 70  YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYL---ESKQF 126
Query: 786 IHCDLKPKN----------VFDFGIGRLLTGD 807
           +H DL  +N          V DFG+ R +  D
Sbjct: 127 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 158

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V+ 
Sbjct: 13  FLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 69
Query: 737 ISSCSNEDFKALDCLHSTN-CSLNIFDK----------LNIMIDVASALEYLHFSHSTPV 785
              C+ +    +   +  N C LN   +          L +  DV  A+EYL    S   
Sbjct: 70  YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYL---ESKQF 126
Query: 786 IHCDLKPKN----------VFDFGIGRLLTGD 807
           +H DL  +N          V DFG+ R +  D
Sbjct: 127 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 158

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           F KE  +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V+ 
Sbjct: 8   FLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 64
Query: 737 ISSCSNEDFKALDCLHSTN-CSLNIFDK----------LNIMIDVASALEYLHFSHSTPV 785
              C+ +    +   +  N C LN   +          L +  DV  A+EYL    S   
Sbjct: 65  YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYL---ESKQF 121
Query: 786 IHCDLKPKN----------VFDFGIGRLLTGD 807
           +H DL  +N          V DFG+ R +  D
Sbjct: 122 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 153

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 665 FSYQDLFRATEKFSKE------NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMAL--- 715
           FS+ +L   T  F +       N +G G FG VYKG +++   VA+K       +     
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEEL 67
Query: 716 -KSFEAECEVMKNIRHRNHVKRISSCSNED--------------FKALDCLHSTNCSLNI 760
            + F+ E +VM   +H N V+ +   S+ D                 L CL  T   L+ 
Sbjct: 68  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-PLSW 126
Query: 761 FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM 810
             +  I    A+ + +LH +H    IH D+K  N+           DFG+ R        
Sbjct: 127 HMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQX 183
Query: 811 IQTETLV-TIGYMAPGLL 827
           +    +V T  YMAP  L
Sbjct: 184 VMXXRIVGTTAYMAPEAL 201

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 40/198 (20%)
Query: 665 FSYQDLFRATEKFSKE------NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMAL--- 715
           FS+ +L   T  F +       N +G G FG VYKG +++   VA+K       +     
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITTEEL 73
Query: 716 -KSFEAECEVMKNIRHRNHVKRISSCSNED--------------FKALDCLHSTNCSLNI 760
            + F+ E +VM   +H N V+ +   S+ D                 L CL  T   L+ 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-PLSW 132
Query: 761 FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRS 809
             +  I    A+ + +LH +H    IH D+K  N+           DFG+ R      ++
Sbjct: 133 HMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQT 189
Query: 810 MIQTETLVTIGYMAPGLL 827
           ++ +  + T  YMAP  L
Sbjct: 190 VMXSRIVGTTAYMAPEAL 207

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 28/177 (15%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRL--HDG--IEVAIKVFHQNCAMALKS-FEAECEVMKN 727
           A E      ++G G FG VY+G    H G  I VA+K   ++C +  K  F +E  +MKN
Sbjct: 22  AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 81
Query: 728 IRHRNHVKRISSCSNEDFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYL 777
           + H + VK I     E    +            L     SL +   +   + +  A+ YL
Sbjct: 82  LDHPHIVKLIGIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYL 141
Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               S   +H D+  +N+           DFG+ R +  +     + T + I +M+P
Sbjct: 142 ---ESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSP 195

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 665 FSYQDLFRATEKFSKE------NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMAL--- 715
           FS+ +L   T  F +       N +G G FG VYKG +++   VA+K       +     
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITTEEL 73
Query: 716 -KSFEAECEVMKNIRHRNHVKRISSCSNED--------------FKALDCLHSTNCSLNI 760
            + F+ E +VM   +H N V+ +   S+ D                 L CL  T   L+ 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-PLSW 132
Query: 761 FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM 810
             +  I    A+ + +LH +H    IH D+K  N+           DFG+ R        
Sbjct: 133 HMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQT 189
Query: 811 IQTETLV-TIGYMAPGLL 827
           +    +V T  YMAP  L
Sbjct: 190 VMXXRIVGTTAYMAPEAL 207

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 40/192 (20%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR--LHDGIEVAIKVFHQNCA---MALKSFEAECEV 724
           L RA +++     IG G++G V+K R   + G  VA+K          M L +   E  V
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIR-EVAV 64
Query: 725 MKNIR---HRNHVKRISSCS----NEDFKALDCLHSTNCSLNIF-DKL-----------N 765
           ++++    H N V+    C+    + + K        +  L  + DK+           +
Sbjct: 65  LRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKD 124
Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           +M  +   L++LH SH   V+H DLKP+N+           DFG+ R+ +    M  T  
Sbjct: 125 MMFQLLRGLDFLH-SHR--VVHRDLKPQNILVTSSGQIKLADFGLARIYSF--QMALTSV 179
Query: 816 LVTIGYMAPGLL 827
           +VT+ Y AP +L
Sbjct: 180 VVTLWYRAPEVL 191

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 34/172 (19%)
Query: 683 IGVGSFGSV---YKGRLHDGIEVAIKVFH---QNCAMALKSFEAECEVMKNIRHRNHVKR 736
           +G G++GSV   Y  RL    +VA+K      Q+   A +++  E  ++K+++H N +  
Sbjct: 36  VGSGAYGSVCSAYDARLRQ--KVAVKKLSRPFQSLIHARRTYR-ELRLLKHLKHENVIGL 92
Query: 737 IS----SCSNEDFKALDCLHS-TNCSLNIFDKLNIMID------VASALEYLHFSHSTPV 785
           +     + S EDF  +  + +     LN   K   + D      V   L  L + HS  +
Sbjct: 93  LDVFTPATSIEDFSEVYLVTTLMGADLNNIVKSQALSDEHVQFLVYQLLRGLKYIHSAGI 152
Query: 786 IHCDLKPKNV----------FDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           IH DLKP NV           DFG+ R    D  M  T  + T  Y AP ++
Sbjct: 153 IHRDLKPSNVAVNEDSELRILDFGLAR--QADEEM--TGYVATRWYRAPEIM 200

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 34/172 (19%)
Query: 683 IGVGSFGSV---YKGRLHDGIEVAIKVFH---QNCAMALKSFEAECEVMKNIRHRNHVKR 736
           +G G++GSV   Y  RL    +VA+K      Q+   A +++  E  ++K+++H N +  
Sbjct: 36  VGSGAYGSVCSAYDARLRQ--KVAVKKLSRPFQSLIHARRTYR-ELRLLKHLKHENVIGL 92
Query: 737 IS----SCSNEDFKALDCLHS-TNCSLNIFDKLNIMID------VASALEYLHFSHSTPV 785
           +     + S EDF  +  + +     LN   K   + D      V   L  L + HS  +
Sbjct: 93  LDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHSAGI 152
Query: 786 IHCDLKPKNV----------FDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           IH DLKP NV           DFG+ R    D  M  T  + T  Y AP ++
Sbjct: 153 IHRDLKPSNVAVNEDSELRILDFGLAR--QADEEM--TGYVATRWYRAPEIM 200

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 28/177 (15%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRL--HDG--IEVAIKVFHQNCAMALKS-FEAECEVMKN 727
           A E      ++G G FG VY+G    H G  I VA+K   ++C +  K  F +E  +MKN
Sbjct: 10  AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 69
Query: 728 IRHRNHVKRISSCSNEDFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYL 777
           + H + VK I     E    +            L     SL +   +   + +  A+ YL
Sbjct: 70  LDHPHIVKLIGIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYL 129
Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               S   +H D+  +N+           DFG+ R +  +     + T + I +M+P
Sbjct: 130 ---ESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSP 183

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 31/160 (19%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 134
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE 814
            IH DL  +N+           DFG+ ++L  D+   + +
Sbjct: 135 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVK 174

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 40/192 (20%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR--LHDGIEVAIKVFHQNCA---MALKSFEAECEV 724
           L RA +++     IG G++G V+K R   + G  VA+K          M L +   E  V
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIR-EVAV 64
Query: 725 MKNIR---HRNHVKRISSCS----NEDFKALDCLHSTNCSLNIF-DKL-----------N 765
           ++++    H N V+    C+    + + K        +  L  + DK+           +
Sbjct: 65  LRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKD 124
Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           +M  +   L++LH SH   V+H DLKP+N+           DFG+ R+ +    M  T  
Sbjct: 125 MMFQLLRGLDFLH-SHR--VVHRDLKPQNILVTSSGQIKLADFGLARIYSF--QMALTSV 179
Query: 816 LVTIGYMAPGLL 827
           +VT+ Y AP +L
Sbjct: 180 VVTLWYRAPEVL 191

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVA----IKVFHQNCAMALKSFEAECEVMKNIRH 730
           +K+ K   IG G++G+V+K +  +  E+     +++   +  +   +    C ++K ++H
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREIC-LLKELKH 60
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSLN-IFDKLNIMID-------VASALEYLHFSHS 782
           +N V R+    + D K        +  L   FD  N  +D       +   L+ L F HS
Sbjct: 61  KNIV-RLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS 119
Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
             V+H DLKP+N+           DFG+ R   G      +  +VT+ Y  P +L
Sbjct: 120 RNVLHRDLKPQNLLINRNGELKLADFGLARAF-GIPVRCYSAEVVTLWYRPPDVL 173

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG G FG V+ G   +  +VAIK   +  AM+ + F  E EVM  + H   V+    C  
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 743 E-------DFKALDCLHS-TNCSLNIFDK---LNIMIDVASALEYLHFSHSTPVIHCDLK 791
           +       +F    CL         +F     L + +DV   + YL       VIH DL 
Sbjct: 74  QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEASVIHRDLA 130
Query: 792 PKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            +N          V DFG+ R +  D+    T T   + + +P
Sbjct: 131 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 173

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 28/177 (15%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRL--HDG--IEVAIKVFHQNCAMALKS-FEAECEVMKN 727
           A E      ++G G FG VY+G    H G  I VA+K   ++C +  K  F +E  +MKN
Sbjct: 6   AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 65
Query: 728 IRHRNHVKRISSCSNEDFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYL 777
           + H + VK I     E    +            L     SL +   +   + +  A+ YL
Sbjct: 66  LDHPHIVKLIGIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYL 125
Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               S   +H D+  +N+           DFG+ R +  +     + T + I +M+P
Sbjct: 126 ---ESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSP 179

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 7   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 65
Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFD-------KLNIMIDVASALEY-LHFSHSTPVI 786
           +  +  S E    +    S    L+          +L  ++D+A+ +   + +      +
Sbjct: 66  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYV 125
Query: 787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 126 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 173

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 34/172 (19%)
Query: 683 IGVGSFGSV---YKGRLHDGIEVAIKVFH---QNCAMALKSFEAECEVMKNIRHRNHVKR 736
           +G G++GSV   Y  RL    +VA+K      Q+   A +++  E  ++K+++H N +  
Sbjct: 28  VGSGAYGSVCSAYDARLRQ--KVAVKKLSRPFQSLIHARRTYR-ELRLLKHLKHENVIGL 84
Query: 737 IS----SCSNEDFKALDCLHS-TNCSLNIFDKLNIMID------VASALEYLHFSHSTPV 785
           +     + S EDF  +  + +     LN   K   + D      V   L  L + HS  +
Sbjct: 85  LDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHSAGI 144
Query: 786 IHCDLKPKNV----------FDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           IH DLKP NV           DFG+ R    D  M  T  + T  Y AP ++
Sbjct: 145 IHRDLKPSNVAVNEDCELRILDFGLAR--QADEEM--TGYVATRWYRAPEIM 192

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 40/192 (20%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR--LHDGIEVAIKVFHQNCA---MALKSFEAECEV 724
           L RA +++     IG G++G V+K R   + G  VA+K          M L +   E  V
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIR-EVAV 64
Query: 725 MKNIR---HRNHVKRISSCS----NEDFKALDCLHSTNCSLNIF-DKL-----------N 765
           ++++    H N V+    C+    + + K        +  L  + DK+           +
Sbjct: 65  LRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKD 124
Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           +M  +   L++LH SH   V+H DLKP+N+           DFG+ R+ +    M  T  
Sbjct: 125 MMFQLLRGLDFLH-SHR--VVHRDLKPQNILVTSSGQIKLADFGLARIYSF--QMALTSV 179
Query: 816 LVTIGYMAPGLL 827
           +VT+ Y AP +L
Sbjct: 180 VVTLWYRAPEVL 191

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 96  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 152
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 153 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 187

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 109 GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 165
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 166 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 200

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 96  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 152
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 153 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 187

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 76  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 132
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 133 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 167

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 134
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 135 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 169

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 33  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 92
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 93  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 150
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +  + V T  Y++P LL
Sbjct: 151 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 207

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 134
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 135 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 169

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 82  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 138
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 139 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 173

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDL 483
              L  L GL L FN     I D L +L  LN L L+ N  S    S L  LTSL+  + 
Sbjct: 103 LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF 158
Query: 484 GSNRLTSVLPSTFWNLKDILFFDLSSNSL-DGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
            SN++T + P    NL  +   D+SSN + D  +   + NL  +I  N   N  S   P 
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITP- 212
Query: 543 TIGDLKDLQNISLACNGLEGL-IPESFGYLTELNLSFNKLEGEIPRGG 589
            +G L +L  +SL  N L+ +    S   LT+L+L+ N++    P  G
Sbjct: 213 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 259

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 85  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 141
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 142 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 176

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 29  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 88
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 89  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 146
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +  + V T  Y++P LL
Sbjct: 147 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 203

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 77  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 133
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 134 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 168

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 83  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 139
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 140 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 174

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 84  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 140
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 141 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 175

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L      ++    L     +   +EYL    +  
Sbjct: 81  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKR 137
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 138 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 172

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG G FG V+ G   +  +VAIK   +  AM+ + F  E EVM  + H   V+    C  
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 743 E-------DFKALDCLHS-TNCSLNIFDK---LNIMIDVASALEYLHFSHSTPVIHCDLK 791
           +       +F    CL         +F     L + +DV   + YL       VIH DL 
Sbjct: 72  QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEACVIHRDLA 128
Query: 792 PKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            +N          V DFG+ R +  D+    T T   + + +P
Sbjct: 129 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 171

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG G FG V+ G   +  +VAIK   +  AM+ + F  E EVM  + H   V+    C  
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 743 E-------DFKALDCLHS-TNCSLNIFDK---LNIMIDVASALEYLHFSHSTPVIHCDLK 791
           +       +F    CL         +F     L + +DV   + YL       VIH DL 
Sbjct: 77  QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEACVIHRDLA 133
Query: 792 PKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            +N          V DFG+ R +  D+    T T   + + +P
Sbjct: 134 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 176

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG G FG V+ G   +  +VAIK   +  AM+ + F  E EVM  + H   V+    C  
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 743 E-------DFKALDCLHS-TNCSLNIFDK---LNIMIDVASALEYLHFSHSTPVIHCDLK 791
           +       +F    CL         +F     L + +DV   + YL       VIH DL 
Sbjct: 74  QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEACVIHRDLA 130
Query: 792 PKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            +N          V DFG+ R +  D+    T T   + + +P
Sbjct: 131 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 173

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG G FG V+ G   +  +VAIK   +  AM+ + F  E EVM  + H   V+    C  
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 743 E-------DFKALDCLHS-TNCSLNIFDK---LNIMIDVASALEYLHFSHSTPVIHCDLK 791
           +       +F    CL         +F     L + +DV   + YL       VIH DL 
Sbjct: 75  QAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEACVIHRDLA 131
Query: 792 PKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            +N          V DFG+ R +  D+    T T   + + +P
Sbjct: 132 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 174

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 35  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 94
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 95  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 152
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 153 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 209

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 149
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 150 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKN 727
           +  E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  
Sbjct: 7   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 66
Query: 728 IRHRNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYL 777
           + H   VK   +  +++       ++ N  L         FD+        ++ SALEYL
Sbjct: 67  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL 126
Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGL 826
           H      +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P L
Sbjct: 127 H---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPEL 183
Query: 827 L 827
           L
Sbjct: 184 L 184

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 30/177 (16%)
Query: 675 EKFSKENLIGVGSFGSVYKGR--LHDGIEV--AIKVFHQNCA--MALKSFEAECEVMKNI 728
           E + K + +G G++ +VYKG+  L D +     I++ H+  A   A++    E  ++K++
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIR----EVSLLKDL 57
Query: 729 RHRNHVKRISSCSNED-----FKALDC---LHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
           +H N V        E      F+ LD     +  +C  NI +  N+ + +   L  L + 
Sbjct: 58  KHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYC 116
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           H   V+H DLKP+N+           DFG+ R  +        E +VT+ Y  P +L
Sbjct: 117 HRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNE-VVTLWYRPPDIL 172

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 683 IGVGSFGSVYKGR---LHD--GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
           +G G+FGSV   R   L D  G  VA+K    +    L+ FE E E++K+++H N VK  
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 738 SSCSNEDFKAL-------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             C +   + L             D L +    ++    L     +   +EYL    +  
Sbjct: 81  GVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTSQICKGMEYL---GTKR 137
Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRS 809
            IH DL  +N+           DFG+ ++L  D+ 
Sbjct: 138 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 172

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 149
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 150 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 90  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 147
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 148 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELL 204

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 33  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 92
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 93  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 150
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 151 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 207

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 149
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 150 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 30/179 (16%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 37  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 96
Query: 731 RNHVKRISSCSNEDFKALDCL-HSTNCSL-------NIFDKLNIMI---DVASALEYLHF 779
              VK +  C  +D K    L ++ N  L         FD+        ++ SALEYLH 
Sbjct: 97  PFFVK-LYFCFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH- 154
Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
                +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 155 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 211

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDL 483
              L  L GL L FN     I D L +L  LN L L+ N  S    S L  LTSL+    
Sbjct: 103 LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF 158
Query: 484 GSNRLTSVLPSTFWNLKDILFFDLSSNSL-DGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
            SN++T + P    NL  +   D+SSN + D  +   + NL  +I  N   N  S   P 
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITP- 212
Query: 543 TIGDLKDLQNISLACNGLEGL-IPESFGYLTELNLSFNKLEGEIPRGG 589
            +G L +L  +SL  N L+ +    S   LT+L+L+ N++    P  G
Sbjct: 213 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 259

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 90  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 147
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 148 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 204

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 149
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 150 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDL 483
              L  L GL L FN     I D L +L  LN L L+ N  S    S L  LTSL+    
Sbjct: 103 LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF 158
Query: 484 GSNRLTSVLPSTFWNLKDILFFDLSSNSL-DGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
            SN++T + P    NL  +   D+SSN + D  +   + NL  +I  N   N  S   P 
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITP- 212
Query: 543 TIGDLKDLQNISLACNGLEGL-IPESFGYLTELNLSFNKLEGEIPRGG 589
            +G L +L  +SL  N L+ +    S   LT+L+L+ N++    P  G
Sbjct: 213 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 259

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 90  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 147
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 148 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 204

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKN 727
           +  E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  
Sbjct: 4   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 63
Query: 728 IRHRNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYL 777
           + H   VK   +  +++       ++ N  L         FD+        ++ SALEYL
Sbjct: 64  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL 123
Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGL 826
           H      +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P L
Sbjct: 124 H---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPEL 180
Query: 827 L 827
           L
Sbjct: 181 L 181

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKN 727
           +  E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  
Sbjct: 6   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 65
Query: 728 IRHRNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYL 777
           + H   VK   +  +++       ++ N  L         FD+        ++ SALEYL
Sbjct: 66  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL 125
Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGL 826
           H      +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P L
Sbjct: 126 H---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPEL 182
Query: 827 L 827
           L
Sbjct: 183 L 183

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 149
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 150 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKN 727
           +  E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64
Query: 728 IRHRNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYL 777
           + H   VK   +  +++       ++ N  L         FD+        ++ SALEYL
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL 124
Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGL 826
           H      +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P L
Sbjct: 125 H---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPEL 181
Query: 827 L 827
           L
Sbjct: 182 L 182

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 29  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 88
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 89  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 146
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 147 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 203

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 47/190 (24%)
Query: 673 ATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFHQNCAMALKSFE-AECEVMKNIRH 730
           ++ +F +   +G G++ +VYKG     G+ VA+K    +      S    E  +MK ++H
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH 62
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSLNIFD----KLNIMIDVASA------------- 773
            N V+             D +H+ N    +F+     L   +D  +              
Sbjct: 63  ENIVR-----------LYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVK 111
Query: 774 ------LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV 817
                 L+ L F H   ++H DLKP+N+           DFG+ R      +   +E +V
Sbjct: 112 YFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSE-VV 170
Query: 818 TIGYMAPGLL 827
           T+ Y AP +L
Sbjct: 171 TLWYRAPDVL 180

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 36  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 94
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 95  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 154
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 155 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 211
Query: 823 A 823
           A
Sbjct: 212 A 212

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 133 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 189
Query: 823 A 823
           A
Sbjct: 190 A 190

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 18  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 137 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 193
Query: 823 A 823
           A
Sbjct: 194 A 194

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
           E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  + H
Sbjct: 14  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 73
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMI---DVASALEYLHFS 780
              VK   +  +++       ++ N  L         FD+        ++ SALEYLH  
Sbjct: 74  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 131
Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
               +IH DLKP+N+           DFG  ++L+ +    +    V T  Y++P LL
Sbjct: 132 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 188

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 133 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 189
Query: 823 A 823
           A
Sbjct: 190 A 190

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 34/201 (16%)
Query: 656 GGKSKTLRRFSYQDL----FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH-- 708
           G  S+    F  Q+L    +   E++   + +G G++GSV        G+ VA+K     
Sbjct: 1   GSHSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP 60
Query: 709 -QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFD 762
            Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   
Sbjct: 61  FQSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIV 119
Query: 763 KLNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTG 806
           K   + D      +   L  L + HS  +IH DLKP N          + DFG+ R    
Sbjct: 120 KCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HT 177
Query: 807 DRSMIQTETLVTIGYMAPGLL 827
           D  M  T  + T  Y AP ++
Sbjct: 178 DDEM--TGYVATRWYRAPEIM 196

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 25/163 (15%)
Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN 742
           IG G FG V+ G   +  +VAIK   +  +M+   F  E EVM  + H   V+    C  
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIKEG-SMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 743 E-------DFKALDCLHST-NCSLNIFDK---LNIMIDVASALEYLHFSHSTPVIHCDLK 791
           +       +F    CL         +F     L + +DV   + YL       VIH DL 
Sbjct: 94  QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEACVIHRDLA 150
Query: 792 PKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            +N          V DFG+ R +  D+    T T   + + +P
Sbjct: 151 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 193

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 132 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 188
Query: 823 A 823
           A
Sbjct: 189 A 189

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 44/184 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFH---QNCAMALKSFEAECEVMKNIRHR 731
           EK+     IG G++G VYK + + G   A+K      ++  +   +   E  ++K ++H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHS 60
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLN----IMIDVASA-------------- 773
           N V           K  D +H+    + +F+ L+     ++DV                 
Sbjct: 61  NIV-----------KLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQL 109
Query: 774 LEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMA 823
           L  + + H   V+H DLKP+N          + DFG+ R   G      T  +VT+ Y A
Sbjct: 110 LNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAF-GIPVRKYTHEIVTLWYRA 168
Query: 824 PGLL 827
           P +L
Sbjct: 169 PDVL 172

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 34/201 (16%)
Query: 656 GGKSKTLRRFSYQDL----FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH-- 708
           G  S+    F  Q+L    +   E++   + +G G++GSV        G+ VA+K     
Sbjct: 1   GSMSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP 60
Query: 709 -QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFD 762
            Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   
Sbjct: 61  FQSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIV 119
Query: 763 KLNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTG 806
           K   + D      +   L  L + HS  +IH DLKP N          + DFG+ R    
Sbjct: 120 KCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLAR--HT 177
Query: 807 DRSMIQTETLVTIGYMAPGLL 827
           D  M  T  + T  Y AP ++
Sbjct: 178 DDEM--TGYVATRWYRAPEIM 196

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 133 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 189
Query: 823 A 823
           A
Sbjct: 190 A 190

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALKSFEAECEVM 725
           ++   E++   + IG G++GSV        G+ VA+K      Q+   A +++  E  ++
Sbjct: 22  IWEVPERYQNLSPIGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLL 80
Query: 726 KNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID------VASAL 774
           K+++H N +  +     + S E+F  +  + H     LN   K   + D      +   L
Sbjct: 81  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQIL 140
Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  +IH DLKP N          + DFG+ R    D  M  T  + T  Y AP
Sbjct: 141 RGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLAR--HTDDEM--TGYVATRWYRAP 196
Query: 825 GLL 827
            ++
Sbjct: 197 EIM 199

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 130 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 186
Query: 823 A 823
           A
Sbjct: 187 A 187

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 30/197 (15%)
Query: 656 GGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNC 711
           G +    R+   + ++   E++   + +G G++GSV        G+ VA+K      Q+ 
Sbjct: 1   GSRPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI 60
Query: 712 AMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNI 766
             A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   K   
Sbjct: 61  IHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK 119
Query: 767 MID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSM 810
           + D      +   L  L + HS  +IH DLKP N          + DFG+ R    D  M
Sbjct: 120 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HTDDEM 177
Query: 811 IQTETLVTIGYMAPGLL 827
             T  + T  Y AP ++
Sbjct: 178 --TGYVATRWYRAPEIM 192

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALKSFEAECEVM 725
           ++   E++   + +G G++GSV        G+ VA+K      Q+   A +++  E  ++
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLL 75
Query: 726 KNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID------VASAL 774
           K+++H N +  +     + S E+F  +  + H     LN   K   + D      +   L
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQKLTDDHVQFLIYQIL 135
Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  +IH DLKP N          + DFG+ R    D  M  T  + T  Y AP
Sbjct: 136 RGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLAR--HTDDEM--TGYVATRWYRAP 191
Query: 825 GLL 827
            ++
Sbjct: 192 EIM 194

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFH----QNCAMALKSFEAECEVMKNIRHR 731
           + + E +IG+G FG VY+     G EVA+K       ++ +  +++   E ++   ++H 
Sbjct: 8   ELTLEEIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHP 66
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDK---------LNIMIDVASALEYLHFSHS 782
           N +     C  E    L    +    LN             +N  + +A  + YLH    
Sbjct: 67  NIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAI 126
Query: 783 TPVIHCDLKPKNVF 796
            P+IH DLK  N+ 
Sbjct: 127 VPIIHRDLKSSNIL 140

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 34/200 (17%)
Query: 657 GKSKTLRRFSYQDL----FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH--- 708
           G S+    F  Q+L    +   E++   + +G G++GSV        G+ VA+K      
Sbjct: 11  GMSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF 70
Query: 709 QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDK 763
           Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   K
Sbjct: 71  QSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK 129
Query: 764 LNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGD 807
              + D      +   L  L + HS  +IH DLKP N          + DFG+ R    D
Sbjct: 130 CQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLAR--HTD 187
Query: 808 RSMIQTETLVTIGYMAPGLL 827
             M  T  + T  Y AP ++
Sbjct: 188 DEM--TGYVATRWYRAPEIM 205

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 8   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 66
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 67  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAEG 126
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 127 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 183
Query: 823 A 823
           A
Sbjct: 184 A 184

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 34/201 (16%)
Query: 656 GGKSKTLRRFSYQDL----FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH-- 708
           G  S+    F  Q+L    +   E++   + +G G++GSV        G+ VA+K     
Sbjct: 11  GSMSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP 70
Query: 709 -QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFD 762
            Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   
Sbjct: 71  FQSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIV 129
Query: 763 KLNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTG 806
           K   + D      +   L  L + HS  +IH DLKP N          + DFG+ R    
Sbjct: 130 KCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HT 187
Query: 807 DRSMIQTETLVTIGYMAPGLL 827
           D  M  T  + T  Y AP ++
Sbjct: 188 DDEM--TGYVATRWYRAPEIM 206

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 44/184 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFH---QNCAMALKSFEAECEVMKNIRHR 731
           EK+     IG G++G VYK + + G   A+K      ++  +   +   E  ++K ++H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHS 60
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLN----IMIDVASA-------------- 773
           N V           K  D +H+    + +F+ L+     ++DV                 
Sbjct: 61  NIV-----------KLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQL 109
Query: 774 LEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMA 823
           L  + + H   V+H DLKP+N          + DFG+ R   G      T  +VT+ Y A
Sbjct: 110 LNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAF-GIPVRKYTHEVVTLWYRA 168
Query: 824 PGLL 827
           P +L
Sbjct: 169 PDVL 172

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 34/201 (16%)
Query: 656 GGKSKTLRRFSYQDL----FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH-- 708
           G  S+    F  Q+L    +   E++   + +G G++GSV        G+ VA+K     
Sbjct: 11  GSMSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP 70
Query: 709 -QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFD 762
            Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   
Sbjct: 71  FQSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIV 129
Query: 763 KLNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTG 806
           K   + D      +   L  L + HS  +IH DLKP N          + DFG+ R    
Sbjct: 130 KCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HT 187
Query: 807 DRSMIQTETLVTIGYMAPGLL 827
           D  M  T  + T  Y AP ++
Sbjct: 188 DDEM--TGYVATRWYRAPEIM 206

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 34/209 (16%)
Query: 644 AVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEV 702
           A P  + +K     +    R+   + ++   E++   + +G G++GSV     +  G+++
Sbjct: 24  AAPFTMSHKE----RPTFYRQELNKTIWEVPERYQTLSPVGSGAYGSVCSSYDVKSGLKI 79
Query: 703 AIKVFH---QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HST 754
           A+K      Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H  
Sbjct: 80  AVKKLSRPFQSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPATSLEEFNDVYLVTHLM 138
Query: 755 NCSLNIFDKLNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDF 798
              LN   K   + D      +   L  L + HS  +IH DLKP N          + DF
Sbjct: 139 GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDF 198
Query: 799 GIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           G+ R    D  M  T  + T  Y AP ++
Sbjct: 199 GLAR--HTDDEM--TGYVATRWYRAPEIM 223

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 34/201 (16%)
Query: 656 GGKSKTLRRFSYQDL----FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH-- 708
           G  S+    F  Q+L    +   E++   + +G G++GSV        G+ VA+K     
Sbjct: 11  GSMSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSKP 70
Query: 709 -QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFD 762
            Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   
Sbjct: 71  FQSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIV 129
Query: 763 KLNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTG 806
           K   + D      +   L  L + HS  +IH DLKP N          + DFG+ R    
Sbjct: 130 KCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HT 187
Query: 807 DRSMIQTETLVTIGYMAPGLL 827
           D  M  T  + T  Y AP ++
Sbjct: 188 DDEM--TGYVATRWYRAPEIM 206

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 34/201 (16%)
Query: 656 GGKSKTLRRFSYQDL----FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH-- 708
           G  S+    F  Q+L    +   E++   + +G G++GSV        G+ VA+K     
Sbjct: 1   GSMSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP 60
Query: 709 -QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFD 762
            Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   
Sbjct: 61  FQSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIV 119
Query: 763 KLNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTG 806
           K   + D      +   L  L + HS  +IH DLKP N          + DFG+ R    
Sbjct: 120 KCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HT 177
Query: 807 DRSMIQTETLVTIGYMAPGLL 827
           D  M  T  + T  Y AP ++
Sbjct: 178 DDEM--TGYVATRWYRAPEIM 196

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 17  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 75
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 76  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 135
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 136 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 192
Query: 823 A 823
           A
Sbjct: 193 A 193

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 44/184 (23%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFH---QNCAMALKSFEAECEVMKNIRHR 731
           EK+     IG G++G VYK + + G   A+K      ++  +   +   E  ++K ++H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHS 60
Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLN----IMIDVASA-------------- 773
           N V           K  D +H+    + +F+ L+     ++DV                 
Sbjct: 61  NIV-----------KLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQL 109
Query: 774 LEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMA 823
           L  + + H   V+H DLKP+N          + DFG+ R   G      T  +VT+ Y A
Sbjct: 110 LNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAF-GIPVRKYTHEVVTLWYRA 168
Query: 824 PGLL 827
           P +L
Sbjct: 169 PDVL 172

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALKSFEAECEVM 725
           ++   E++   + +G G++GSV        G+ VA+K      Q+   A +++  E  ++
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLL 75
Query: 726 KNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID------VASAL 774
           K+++H N +  +     + S E+F  +  + H     LN   K   + D      +   L
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQIL 135
Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  +IH DLKP N          + DFG+ R    D  M  T  + T  Y AP
Sbjct: 136 RGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HTDDEM--TGXVATRWYRAP 191
Query: 825 GLL 827
            ++
Sbjct: 192 EIM 194

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 21  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 79
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 80  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 139
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 140 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 196
Query: 823 A 823
           A
Sbjct: 197 A 197

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALKSFEAECEVM 725
           ++   E++   + +G G++GSV        G+ VA+K      Q+   A +++  E  ++
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLL 75
Query: 726 KNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID------VASAL 774
           K+++H N +  +     + S E+F  +  + H     LN   K   + D      +   L
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQKLTDDHVQFLIYQIL 135
Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  +IH DLKP N          + DFG+ R    D  M  T  + T  Y AP
Sbjct: 136 RGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HTDDEM--TGYVATRWYRAP 191
Query: 825 GLL 827
            ++
Sbjct: 192 EIM 194

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVA----IKVFHQNCAMALKSFEAECEVMKNIRH 730
           +K+ K   IG G++G+V+K +  +  E+     +++   +  +   +    C ++K ++H
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREIC-LLKELKH 60
Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSLN-IFDKLNIMID-------VASALEYLHFSHS 782
           +N V R+    + D K        +  L   FD  N  +D       +   L+ L F HS
Sbjct: 61  KNIV-RLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS 119
Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
             V+H DLKP+N+           +FG+ R   G      +  +VT+ Y  P +L
Sbjct: 120 RNVLHRDLKPQNLLINRNGELKLANFGLARAF-GIPVRCYSAEVVTLWYRPPDVL 173

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 675 EKFSKENLIGVGSFGSVYKGRLHD---GIEVAIKVFH---QNCAMALKSFEAECEVMKNI 728
           E++   + +G G   +VY     D    I+VAIK      +     LK FE E      +
Sbjct: 11  ERYKIVDKLGGGGMSTVYLAE--DTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQL 68
Query: 729 RHRNHVKRISSCSNED--FKALDCLHSTNCSLNIFDKLNIMIDVA-----SALEYLHFSH 781
            H+N V  I     +D  +  ++ +     S  I     + +D A       L+ +  +H
Sbjct: 69  SHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAH 128
Query: 782 STPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQT-ETLVTIGYMAP 824
              ++H D+KP+N          +FDFGI + L+ + S+ QT   L T+ Y +P
Sbjct: 129 DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALS-ETSLTQTNHVLGTVQYFSP 181

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 130 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 186
Query: 823 A 823
           A
Sbjct: 187 A 187

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 34/200 (17%)
Query: 657 GKSKTLRRFSYQDL----FRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH--- 708
           G S+    F  Q+L    +   E++   + +G G++GSV        G+ VA+K      
Sbjct: 11  GMSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF 70
Query: 709 QNCAMALKSFEAECEVMKNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDK 763
           Q+   A +++  E  ++K+++H N +  +     + S E+F  +  + H     LN   K
Sbjct: 71  QSIIHAKRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK 129
Query: 764 LNIMID------VASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGD 807
              + D      +   L  L + HS  +IH DLKP N          + DFG+ R    D
Sbjct: 130 CQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HTD 187
Query: 808 RSMIQTETLVTIGYMAPGLL 827
             M  T  + T  Y AP ++
Sbjct: 188 DEM--TGYVATRWYRAPEIM 205

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 673 ATEKFSKENLIGVGSFGSVYKGRLHDGIEV-AIKVFHQ---NCAMALKSFEAECEVMKNI 728
           A E F     +G G FG+VY  R      + A+KV  +     A        E E+  ++
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 729 RHRNHVKRISSCSNE-------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
           RH N ++      +        ++  L  ++     L+ FD+      +      L + H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 782 STPVIHCDLKPKNVFDFGIGRLLTGD-------RSMIQTETLVTIGYMAPGLL 827
           S  VIH D+KP+N+     G L   D        S  +TE   T+ Y+ P ++
Sbjct: 126 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLPPEMI 178

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALKSFEAECEVM 725
           ++   E++   + +G G++GSV        G+ VA+K      Q+   A +++  E  ++
Sbjct: 24  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLL 82
Query: 726 KNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID------VASAL 774
           K+++H N +  +     + S E+F  +  + H     LN   K   + D      +   L
Sbjct: 83  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQIL 142
Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  +IH DLKP N          + DFG+ R  T D     T  + T  Y AP
Sbjct: 143 RGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR-HTADE---MTGYVATRWYRAP 198
Query: 825 GLL 827
            ++
Sbjct: 199 EIM 201

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDG----IEVAIKVFHQNCA-MALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG  + +G    I VAIK   +  +  A K    E  
Sbjct: 5   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 63
Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 64  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 123
Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E   V I +M
Sbjct: 124 MNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 180
Query: 823 A 823
           A
Sbjct: 181 A 181

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALKSFEAECEVM 725
           ++   E++   + +G G++GSV        G+ VA+K      Q+   A +++  E  ++
Sbjct: 24  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLL 82
Query: 726 KNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID------VASAL 774
           K+++H N +  +     + S E+F  +  + H     LN   K   + D      +   L
Sbjct: 83  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQIL 142
Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  +IH DLKP N          + DFG+ R  T D     T  + T  Y AP
Sbjct: 143 RGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR-HTADE---MTGYVATRWYRAP 198
Query: 825 GLL 827
            ++
Sbjct: 199 EIM 201

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALKSFEAECEVM 725
           ++   E++   + +G G++GSV        G+ VA+K      Q+   A +++  E  ++
Sbjct: 22  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLL 80
Query: 726 KNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID------VASAL 774
           K+++H N +  +     + S E+F  +  + H     LN   K   + D      +   L
Sbjct: 81  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQIL 140
Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  +IH DLKP N          + DFG+ R    D  M  T  + T  Y AP
Sbjct: 141 RGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLAR--HTDDEM--TGYVATRWYRAP 196
Query: 825 GLL 827
            ++
Sbjct: 197 EIM 199

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 670 LFRATEKFSKENLIGVGSFGSVYKG-RLHDGIEVAIKVFH---QNCAMALKSFEAECEVM 725
           ++   E++   + +G G++GSV        G+ VA+K      Q+   A +++  E  ++
Sbjct: 13  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLL 71
Query: 726 KNIRHRNHVKRIS----SCSNEDFKALDCL-HSTNCSLNIFDKLNIMID------VASAL 774
           K+++H N +  +     + S E+F  +  + H     LN   K   + D      +   L
Sbjct: 72  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQIL 131
Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  +IH DLKP N          + DFG+ R    D  M  T  + T  Y AP
Sbjct: 132 RGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HTDDEM--TGYVATRWYRAP 187
Query: 825 GLL 827
            ++
Sbjct: 188 EIM 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	827
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-136
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-135
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-116
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-70
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-80
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-73
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-71
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	6e-36
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-15
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-30
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	9e-29
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-28
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	6e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	7e-28
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-27
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-27
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	8e-27
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-25
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-24
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-24
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-23
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-16
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-19
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-19
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-16
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-19
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	6e-19
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	8e-19
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-18
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-18
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-18
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-18
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-18
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-18
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-18
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	9e-18
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-17
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-17
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-17
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-17
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-17
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-17
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-17
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	3e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-16
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	3e-16
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-16
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	4e-16
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	7e-16
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	8e-16
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	9e-16
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-15
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-15
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-15
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-15
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-15
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-15
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-15
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-15
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-15
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	4e-15
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-15
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	7e-15
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	7e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	9e-15
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-14
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-14
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-14
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-14
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-14
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-14
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	6e-14
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	7e-14
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	8e-14
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-13
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-13
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-13
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-13
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-13
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-13
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	7e-13
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	8e-13
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-12
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-09
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-12
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	6e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	7e-12
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	9e-12
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-11
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-11
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-11
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-11
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-11
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-11
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-11
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-11
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-11
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-11
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-11
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-11
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-11
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-11
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	5e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-11
3an0_A	340	Dual specificity mitogen-activated protein kinase;	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	9e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-10
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-10
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-10
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-10
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-10
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-10
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-10
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-10
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-10
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	4e-10
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-10
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-10
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	6e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	7e-10
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	8e-10
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	9e-10
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	9e-10
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	9e-10
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-09
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-09
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-09
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-09
3fme_A	290	Dual specificity mitogen-activated protein kinase;	4e-09
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	4e-09
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	5e-09
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	5e-09
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-09
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	5e-09
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	6e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	6e-09
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	7e-09
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	8e-09
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	9e-09
3bhy_A	283	Death-associated protein kinase 3; death associate	9e-09
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-08
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-08
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	3e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	4e-08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	5e-08
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	5e-08
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	5e-08
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	5e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	6e-08
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	7e-08
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	7e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-07
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	1e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-07
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-07
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	3e-07
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-07
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-07
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	4e-07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	5e-07
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	5e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	6e-07
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	6e-07
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	6e-07
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	7e-07
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	7e-07
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	8e-07
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	9e-07
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-06
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-06
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-06
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-06
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-06
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	3e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	7e-06
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-05
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	1e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-05
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	2e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-05
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-05
3uqc_A	286	Probable conserved transmembrane protein; structur	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	5e-05
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	5e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	9e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	2e-04
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	3e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  422 bits (1086), Expect = e-136
 Identities = 158/574 (27%), Positives = 242/574 (42%), Gaps = 87/574 (15%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
               +  L++SS N    IP  LG+ S+L  L++S NKLSGD   +I T  +LK L+ S 
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 156 NQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
           NQ  G +      L S+  + L  +K +GE+P  +      L  L L+ N F+G +P   
Sbjct: 257 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 216 SKCKRLQLLNLGFKKLSGAIPKE-ISNLTILRKISLRNNKLRGEIPHEIGYL-PNLENLV 273
             C  L+ L L     SG +P + +  +  L+ + L  N+  GE+P  +  L  +L  L 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 274 LGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIP 333
           L  NN  G +   +                              ++ L L  N F+G IP
Sbjct: 375 LSSNNFSGPILPNLCQ-----------------------NPKNTLQELYLQNNGFTGKIP 411

Query: 334 SFITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPTSIGNLSMSLEN 384
             ++N S+LV L +  N  SG IP+++G         L  N L+G +P  +  +  +LE 
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLET 470

Query: 385 IYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSI 444
           + +   ++ G IP  +SN +NL  + L  N+LTG IP   GRL+ L  L L  N  +G+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 445 PDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGS------------------- 485
           P +L     L  L L  N F+G+IP+ +   +   + +  +                   
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 486 ---NRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
                   +       L      +++S    G  S    N   ++ +++S N  SG IP 
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 543 TIGDLKDLQNISLACNGLEGLIPESFGYLTE---LNLSFNKL------------------ 581
            IG +  L  ++L  N + G IP+  G L     L+LS NKL                  
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 582 ------EGEIPRGGPFANFTAKSFMGNEKLCGLP 609
                  G IP  G F  F    F+ N  LCG P
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  419 bits (1079), Expect = e-135
 Identities = 160/566 (28%), Positives = 264/566 (46%), Gaps = 38/566 (6%)

Query: 48  AAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISS 107
           + + ++  +   L++ K  +  D   L   + +SN + C + G+TC     +VT++++SS
Sbjct: 5   SPSQSLYREIHQLISFKDVLP-DKNLL--PDWSSNKNPCTFDGVTCR--DDKVTSIDLSS 59

Query: 108 LNLQ---GTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSS 164
             L      +   L +L+ L +L LS++ ++G +         L  LD S N LSG +++
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTT 118

Query: 165 VT--FNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL---SKCK 219
           +T   + S +  + + S+ L     V+    L+ L+VL L+ N   G   +       C 
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNL 279
            L+ L +   K+SG +   +S    L  + + +N     IP  +G    L++L +  N L
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235

Query: 280 VGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFIT-N 338
            G    AI   + +K + +  N  +G         L +++ L+L  N+F+G IP F++  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 339 ASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPT-SIGNLSMSLENIYIS 388
              L  LD+  N F G +P   G         L+ N   G LP  ++  +   L+ + +S
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLDLS 351

Query: 389 NCNIGGSIPQLISNLS-NLLLLDLEGNKLTGSIPVTFGRLQK--LQGLYLPFNKLAGSIP 445
                G +P+ ++NLS +LL LDL  N  +G I     +  K  LQ LYL  N   G IP
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

Query: 446 DQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFF 505
             L + + L +L L+ N  SG+IPS LG+L+ LR   L  N L   +P     +K +   
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 506 DLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP 565
            L  N L G +   + N   +  I+LS N  +G+IP  IG L++L  + L+ N   G IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531

Query: 566 ESFG---YLTELNLSFNKLEGEIPRG 588
              G    L  L+L+ N   G IP  
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  370 bits (952), Expect = e-116
 Identities = 138/507 (27%), Positives = 225/507 (44%), Gaps = 33/507 (6%)

Query: 103 LNISSLNLQGTIP-PQLGNLSSLTTLNLSHNKLSGDIPPSIFT---MHKLKFLDFSDNQL 158
           LN+SS  L           L+SL  L+LS N +SG             +LK L  S N++
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 159 SGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC 218
           SG +        ++  + + S+  S  +P  + +    L+ L ++ N   G    A+S C
Sbjct: 191 SGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTC 246

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFN 277
             L+LLN+   +  G IP     L  L+ +SL  NK  GEIP  + G    L  L L  N
Sbjct: 247 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 278 NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFIT 337
           +  G VP    + S ++ + L  N+  G   +   L +  ++ L+L  N FSG +P  +T
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 338 NAS-KLVYLDMGTNSFSGIIPNTIG-----------LTGNPLDGVLPTSIGNLSMSLENI 385
           N S  L+ LD+ +N+FSG I   +            L  N   G +P ++ N S  L ++
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSL 423

Query: 386 YISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP 445
           ++S   + G+IP  + +LS L  L L  N L G IP     ++ L+ L L FN L G IP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 446 DQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFF 505
             L +   LN + L+ N+ +G IP  +G L +L    L +N  +  +P+   + + +++ 
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543

Query: 506 DLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLE--GL 563
           DL++N  +G +   +          ++ N  +G     I +    +    A N LE  G+
Sbjct: 544 DLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 564 IPESFG---YLTELNLSFNKLEGEIPR 587
             E           N++     G    
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSP 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  287 bits (736), Expect = 1e-86
 Identities = 84/596 (14%), Positives = 189/596 (31%), Gaps = 65/596 (10%)

Query: 45  VAVAAASNITTDQQALLALKAHIS------YDPTNLLAQNSTSNTSVCNW---IGITCNV 95
           + ++  +    D  AL  +   ++               N   N  +  W    G++ N 
Sbjct: 20  IKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN- 78

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGD----IPPSIFTMHKLKFL 151
           ++ RVT L++      G +P  +G L+ L  L L  +    +     P  I      +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 152 DFSDNQLSGSLSSVTF--NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHG 209
                    +        + S ++   ++SD     +  +    L     +    N    
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF 197

Query: 210 QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNL 269
            +  A+ +  +L+   +G          E          +    +       +   L +L
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKTEDLKWDNLKDL 251

Query: 270 ENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLS-------LPNVERLN 322
            ++ +     +  +P  +  +  ++ I +  N  +    L  D            ++ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 323 LGLNRF-SGTIPSFITNASKLVYLDMGTNSFSGIIPN--------TIGLTGNPLDGVLPT 373
           +G N   +  + + +    KL  L+   N   G +P         ++ L  N +  +   
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 374 SIGNLSMSLENIYISNCNIGGSIPQL--ISNLSNLLLLDLEGNKLTG-------SIPVTF 424
             G     +EN+  ++  +   IP +    ++S +  +D   N++          +  T 
Sbjct: 372 FCGFTE-QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 425 GRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSG-------SIPSCLGNLTS 477
            +   +  + L  N+++    +     + L+++ L GN  +               N   
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 478 LRSPDLGSNRLTSVLPS-TFWNLKDILFFDLSSNSLDGPLSLDIGNLR------VVIGIN 530
           L S DL  N+LT +        L  ++  DLS NS          N        +    +
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 531 LSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIP 586
              N    + P  I     L  + +  N +  +  +    ++ L++  N       
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  243 bits (621), Expect = 2e-70
 Identities = 86/557 (15%), Positives = 166/557 (29%), Gaps = 66/557 (11%)

Query: 56  DQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIP 115
                L+  A    D   L       N    +  G                 L++ G  P
Sbjct: 17  IVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQ---PGANWNFNKELDMWGAQP 73

Query: 116 P-QLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLD 174
              L +   +T L+L     SG +P +I  + +L+ L    +    +             
Sbjct: 74  GVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL---------- 123

Query: 175 IRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFK--KLS 232
                       P  I       +     +  +         +     L+          
Sbjct: 124 ----------FGPKGISA-NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 233 GAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMST 292
            +I K         +I   +N +   +   +  L  L    +G +  V       +    
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231

Query: 293 VKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSF 352
                        +  L  D +L ++  + +        +P+F+    ++  +++  N  
Sbjct: 232 -----SEYAQQYKTEDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 353 SGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNI-GGSIPQLISNLSNLLLLDL 411
                          D             ++ IYI   N+    +   +  +  L +L+ 
Sbjct: 286 ISGEQ-------LKDDWQALADAPVGE-KIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337

Query: 412 EGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS- 470
             N+L G +P  FG   KL  L L +N++     +      ++  L  A NK    IP+ 
Sbjct: 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395

Query: 471 -CLGNLTSLRSPDLGSNRLTSV-------LPSTFWNLKDILFFDLSSNSLDGPLSLDIGN 522
               +++ + + D   N + SV       L  T +   ++   +LS+N +          
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 523 LRVVIGINLSRNNFSG-------DIPSTIGDLKDLQNISLACNGLEGLIPE----SFGYL 571
              +  INL  N  +        D      +   L +I L  N L  L  +    +  YL
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 572 TELNLSFNKLEGEIPRG 588
             ++LS+N      P  
Sbjct: 516 VGIDLSYNSFSK-FPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  213 bits (545), Expect = 8e-60
 Identities = 65/425 (15%), Positives = 138/425 (32%), Gaps = 46/425 (10%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSL 162
            N        T   +  NL  LT + + +      +P  +  + +++ ++ + N+     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-- 287

Query: 163 SSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMF-HGQIPLALSKCKRL 221
                          +  K   +   +       ++++++  N      +  +L K K+L
Sbjct: 288 --------------GEQLKDDWQALADAPV-GEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVG 281
            +L   + +L G +P    +   L  ++L  N++     +  G+   +ENL    N L  
Sbjct: 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 282 VVPAA-IFNMSTVKKIYLLDNSLLGSFSLGID------LSLPNVERLNLGLNRFSGTIPS 334
           +       ++S +  I    N +        D          NV  +NL  N+ S     
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 335 FITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGG 394
             +  S L  +++  N  + I  N++             +  N    L +I +    +  
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKD--------ENENFKNTY-LLTSIDLRFNKLTK 502

Query: 395 SIPQL-ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP------FNKLAGSIPDQ 447
                  + L  L+ +DL  N  +   P        L+G  +        N+     P+ 
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 448 LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDL 507
           +     L  L +  N           N++ L   D+  N   S+  S      +   + L
Sbjct: 562 ITLCPSLTQLQIGSNDIRKVNEKITPNISVL---DIKDNPNISIDLSYVCPYIEAGMYML 618

Query: 508 SSNSL 512
             +  
Sbjct: 619 FYDKT 623

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  260 bits (667), Expect = 2e-80
 Identities = 87/289 (30%), Positives = 143/289 (49%), Gaps = 21/289 (7%)

Query: 326 NRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENI 385
             + G +    T   ++  LD+   +     P             +P+S+ NL   L  +
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP-------------IPSSLANLP-YLNFL 81

Query: 386 YISNCN-IGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSI 444
           YI   N + G IP  I+ L+ L  L +    ++G+IP    +++ L  L   +N L+G++
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 445 PDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSP-DLGSNRLTSVLPSTFWNLKDIL 503
           P  +  L  L  +   GN+ SG+IP   G+ + L +   +  NRLT  +P TF NL  + 
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200

Query: 504 FFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGL 563
           F DLS N L+G  S+  G+ +    I+L++N+ + D+   +G  K+L  + L  N + G 
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259

Query: 564 IPESFG---YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLP 609
           +P+      +L  LN+SFN L GEIP+GG    F   ++  N+ LCG P
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  200 bits (511), Expect = 3e-58
 Identities = 83/339 (24%), Positives = 129/339 (38%), Gaps = 83/339 (24%)

Query: 55  TDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNV--NSHRVTALNISSLNLQG 112
            D+QALL +K  +  +PT L +   T++     W+G+ C+    ++RV  L++S LNL  
Sbjct: 6   QDKQALLQIKKDLG-NPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64

Query: 113 T---------------------------IPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTM 145
                                       IPP +  L+ L  L ++H  +SG IP  +  +
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 146 HKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKN 205
             L  LDFS N LSG+                        LP +I + L  L  +    N
Sbjct: 125 KTLVTLDFSYNALSGT------------------------LPPSISS-LPNLVGITFDGN 159

Query: 206 MFHGQIPLALSKCKRL-QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIG 264
              G IP +     +L   + +   +L+G IP   +NL  L  + L  N L G+     G
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218

Query: 265 YLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLG 324
              N + + L  N+L   +                         +G      N+  L+L 
Sbjct: 219 SDKNTQKIHLAKNSLAFDLG-----------------------KVG---LSKNLNGLDLR 252

Query: 325 LNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLT 363
            NR  GT+P  +T    L  L++  N+  G IP    L 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  258 bits (661), Expect = 2e-75
 Identities = 99/529 (18%), Positives = 187/529 (35%), Gaps = 44/529 (8%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
           +T LN++   L+          S LT+L++  N +S   P     +  LK L+   N+LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCK 219
                     +++ ++ L S+ +              L  L L+ N           + +
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 220 RLQLLNLGFKKLSGAIPKEIS--NLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN 277
            LQ L L   K+     +E+     + L+K+ L +N+++   P     +  L  L L   
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 278 NLVGVVPAAIF---NMSTVKKIYLLDNSLLG-SFSLGIDLSLPNVERLNLGLNRFSGTIP 333
            L   +   +      ++++ + L ++ L   S +  + L   N+  L+L  N  +    
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 334 SFITNASKLVYLDMGTNSFSGIIPNTIG------------------LTGNPLDGVLPTSI 375
                  +L Y  +  N+   +  +++                   ++   L  +   S 
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 376 GNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGS--IPVTFGRLQ--KLQ 431
             L   LE++ + + +I G    + + L NL  L L  +  +       TF  L    L 
Sbjct: 326 QWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 432 GLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIP-SCLGNLTSLRSPDLGSNRLTS 490
            L L  NK++    D    L  L  L L  N+    +       L ++    L  N+   
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 491 VLPSTFWNLKDILFFDLSSNSLDGPLSLD--IGNLRVVIGINLSRNNFSGDIPSTIGDLK 548
           +  ++F  +  +    L   +L    S       LR +  ++LS NN +      +  L+
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 549 DLQNISLACNGLEGLIPESFGY-----------LTELNLSFNKLEGEIP 586
            L+ + L  N L  L   +              L  LNL  N  +    
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  242 bits (619), Expect = 1e-69
 Identities = 87/504 (17%), Positives = 160/504 (31%), Gaps = 59/504 (11%)

Query: 123 SLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKL 182
           S    + SH KL+  +P  + T   +  L+ + NQL    ++     S            
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQ----------- 50

Query: 183 SGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNL 242
                         L  L +  N      P    K   L++LNL   +LS    K  +  
Sbjct: 51  --------------LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 243 TILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNS 302
           T L ++ L +N ++    +      NL  L L  N L          +  ++++ L +N 
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 303 LLG-SFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG 361
           +           +  ++++L L  N+     P       +L  L +        +   + 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 362 ------------LTGNPLDGVLPTSIGNLS-MSLENIYISNCNIGGSIPQLISNLSNLLL 408
                       L+ + L     T+   L   +L  + +S  N+        + L  L  
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276

Query: 409 LDLEGNKLTGSIPVTFGRLQKLQGLYL---------PFNKLAGSIPDQLCHLARLNTLGL 459
             LE N +      +   L  ++ L L             L          L  L  L +
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRL--TSVLPSTFWNL--KDILFFDLSSNSLDGP 515
             N   G   +    L +L+   L ++     ++   TF +L    +   +L+ N +   
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 516 LSLDIGNLRVVIGINLSRNNFSGDIP-STIGDLKDLQNISLACNGLEGLIPESFGYLT-- 572
            S     L  +  ++L  N    ++       L+++  I L+ N    L   SF  +   
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 573 -ELNLSFNKLEGEIPRGGPFANFT 595
             L L    L+       PF    
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLR 480

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  239 bits (612), Expect = 1e-68
 Identities = 110/536 (20%), Positives = 187/536 (34%), Gaps = 71/536 (13%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT---MHKLKFLDFSDNQLS 159
           L++S   L  T       L +L  L LS+NK+   +            LK L+ S NQ+ 
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIK 184

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLH--YLKVLFLAKNMFHGQIPLALSK 217
                    +  +  + L++ +L   L   +C  L    ++ L L+ +            
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 218 CK--RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG 275
            K   L +L+L +  L+       + L  L    L  N ++    H +  L N+  L L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 276 ---------FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLN 326
                      +L  +   +   +  ++ + + DN + G  S  +   L N++ L+L  +
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNS 363

Query: 327 RFSGTIPSFIT----NASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLP- 372
             S    +  T      S L  L++  N  S I  +            L  N +   L  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 373 TSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG--SIPVTFGRLQKL 430
                L  ++  IY+S            + + +L  L L    L    S P  F  L+ L
Sbjct: 424 QEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 431 QGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS--------GSIPSCLGNLTSLRSPD 482
             L L  N +A    D L  L +L  L L  N  +        G     L  L+ L   +
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 483 LGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
           L SN    +    F +L                       L++   I+L  NN +    S
Sbjct: 543 LESNGFDEIPVEVFKDLF---------------------ELKI---IDLGLNNLNTLPAS 578

Query: 543 TIGDLKDLQNISLACNGLEGLIPESFGY----LTELNLSFNKLEGEIPRGGPFANF 594
              +   L++++L  N +  +  + FG     LTEL++ FN  +        F N+
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (521), Expect = 3e-56
 Identities = 80/440 (18%), Positives = 144/440 (32%), Gaps = 45/440 (10%)

Query: 90  GITCNVNSHRVTALNISSLNLQGTIPPQLGNL--SSLTTLNLSHNKLSGDIPPSIFTMHK 147
            +   + +  +  L++S+  L  T       L  ++LT L+LS+N L+     S   + +
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 148 LKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMF 207
           L++     N +    S     L +V  + L                        ++    
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK----------------RSFTKQSISLASL 317

Query: 208 HGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIG--- 264
                 +    K L+ LN+    + G      + L  L+ +SL N+              
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 265 -YLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNL 323
                L  L L  N +  +   A   +  ++ + L  N +    +      L N+  + L
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 324 GLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLE 383
             N++     +       L  L +   +   +  +             P+    L  +L 
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-------------PSPFQPLR-NLT 483

Query: 384 NIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT--------GSIPVTFGRLQKLQGLYL 435
            + +SN NI      ++  L  L +LDL+ N L         G        L  L  L L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPST 495
             N       +    L  L  + L  N  +    S   N  SL+S +L  N +TSV    
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 496 FW-NLKDILFFDLSSNSLDG 514
           F    +++   D+  N  D 
Sbjct: 604 FGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 3e-12
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 11/128 (8%)

Query: 471 CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGIN 530
           C  +       D    +LT V      N+  +   +L+ N L    + +      +  ++
Sbjct: 2   CTVSHEVA---DCSHLKLTQVPDDLPTNITVL---NLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 531 LSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY---LTELNLSFNKLEGEIPR 587
           +  N  S   P     L  L+ ++L  N L  L  ++F +   LTEL+L  N ++     
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN- 114

Query: 588 GGPFANFT 595
             PF    
Sbjct: 115 -NPFVKQK 121

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIF--TMHKLKFLDF 153
           +   +  +++   NL         N  SL +LNL  N ++  +   +F      L  LD 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDM 616

Query: 154 SDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLK 198
             N    +  S+ + ++ + +   +  +LS      +CN   +  
Sbjct: 617 RFNPFDCTCESIAWFVNWINETHTNIPELSSHY---LCNTPPHYH 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  255 bits (652), Expect = 7e-73
 Identities = 88/646 (13%), Positives = 197/646 (30%), Gaps = 103/646 (15%)

Query: 45  VAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNW------------IGIT 92
           + +   +    D +AL A+   +        +    +     NW             G+ 
Sbjct: 259 IQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVD 318

Query: 93  CNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPP------------ 140
            + N+ RVT L+++    +G +P  +G L+ L  L+   +  +                 
Sbjct: 319 LD-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 141 -------------SIFTMHKLKFLDFSDNQLS-----GSLSSVTFNLSSVLDIRLDSDKL 182
                         +    +L   D   + ++       +   +        I   ++++
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 183 SGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNL 242
           +  +   I   L  L++++ A + F              +  N  + K         SNL
Sbjct: 438 TF-ISKAIQR-LTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNL 490

Query: 243 TILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV---------VPAAIFNMSTV 293
             L  + L N     ++P  +  LP L++L +  N  +           +         +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 294 KKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFS 353
           +  Y+  N+L    +      +  +  L+   N+    + +F     KL  L +  N   
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF-GTNVKLTDLKLDYNQIE 608

Query: 354 GIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQL--ISNLSNLLLLDL 411
            I                P      +  +E +  S+  +   IP +    ++  +  +D 
Sbjct: 609 EI----------------PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651

Query: 412 EGNKLTGSIPVTFG-----RLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS- 465
             NK+              +      + L +N++     +     + ++T+ L+ N  + 
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 466 ------GSIPSCLGNLTSLRSPDLGSNRLTSVLPS-TFWNLKDILFFDLSSNSLDGPLSL 518
                         N   L + DL  N+LTS+        L  +   D+S N        
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

Query: 519 DIGNLRVVIGINLSR------NNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLT 572
              N   +    +        N      P+ I     L  + +  N +  +  +    L 
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLY 830

Query: 573 ELNLSFNKL-EGEIPRGGPFANFTAKSFMGN--EKLCGLPNLQFPK 615
            L+++ N     ++    P+        + +  + + G   L   +
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  245 bits (628), Expect = 2e-71
 Identities = 99/509 (19%), Positives = 174/509 (34%), Gaps = 30/509 (5%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSL 162
           L++S   +Q        +LS L+TL L+ N +      +   +  L+ L   +  L+   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 163 SSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQ 222
           +    +L ++ ++ +  + +         + L  L+ L L+ N         L    ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 223 L----LNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGY-LPNLENLVL--- 274
           L    L+L    ++   P     +  L K++LRNN     +       L  LE   L   
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 275 ---GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDL--SLPNVERLNLGLNRFS 329
                 NL     +A+  +  +         L       IDL   L NV   +L      
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 330 GTIPSFITNASKLVYLDMGTNSFSGIIPNTIG----LTGNPLDGVLPTSIGNLSMSLENI 385
                  +      +L++    F       +     LT     G    S  +L  SLE +
Sbjct: 296 RVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFL 352

Query: 386 YISNCNIG--GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGS 443
            +S   +   G   Q     ++L  LDL  N +   +   F  L++L+ L    + L   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 444 IPDQ-LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLT-SVLPSTFWNLKD 501
                   L  L  L ++      +       L+SL    +  N    + LP  F  L++
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 502 ILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLE 561
           + F DLS   L+        +L  +  +N+S NNF          L  LQ +  + N + 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 562 GLIPESFGY----LTELNLSFNKLEGEIP 586
               +   +    L  LNL+ N       
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  226 bits (579), Expect = 1e-64
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 40/519 (7%)

Query: 104 NISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLS 163
               LN    IP  L    S   L+LS N L      S F+  +L+ LD S  ++     
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 164 SVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQL 223
               +LS +  + L  + +           L  L+ L   +          +   K L+ 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 224 LNLGFKKL-SGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLEN----LVLGFNN 278
           LN+    + S  +P+  SNLT L  + L +NK++     ++  L  +      L L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN 338
           +  + P A   +    K+ L +N    +        L  +E   L L  F         +
Sbjct: 189 MNFIQPGAFKEIRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 339 AS-------------KLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSM--SLE 383
            S             +L YLD   +    +      ++   L  V    + + S     +
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 384 NIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLA-- 441
           ++ + NC  G      + +L  L     +G         +   L  L+ L L  N L+  
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFK 362

Query: 442 GSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP-STFWNLK 500
           G           L  L L+ N     + S    L  L   D   + L  +   S F +L+
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 501 DILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI-PSTIGDLKDLQNISLACNG 559
           ++++ D+S        +     L  +  + ++ N+F  +  P    +L++L  + L+   
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 560 LEGLIPESFG---YLTELNLSFNKLEGEIPRGGPFANFT 595
           LE L P +F     L  LN+S N          P+    
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--FPYKCLN 518

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (520), Expect = 2e-56
 Identities = 90/484 (18%), Positives = 164/484 (33%), Gaps = 51/484 (10%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLT----TLNLSHNKLSGDIPPSIFTMHKLKFL 151
           N   +  L++SS  +Q      L  L  +     +L+LS N ++  I P  F   +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 152 DFSDNQLSGSLSSVTFNLSSVLDI-RLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQ 210
              +N  S ++        + L++ RL   +   E                         
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-------------------GNLEKF 246

Query: 211 IPLALSKCKRLQLLNLGFKKLS---GAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLP 267
              AL     L +       L      I    + LT +   SL +  +         Y  
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF 304

Query: 268 NLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNR 327
             ++L L            + ++   K++    N    +FS    + LP++E L+L  N 
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSL---KRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNG 358

Query: 328 --FSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLT--------GNPLDGVLPTSIGN 377
             F G         + L YLD+  N    +  N +GL          + L  +   S+  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 378 LSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSI-PVTFGRLQKLQGLYLP 436
              +L  + IS+ +   +   + + LS+L +L + GN    +  P  F  L+ L  L L 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTF 496
             +L    P     L+ L  L ++ N F          L SL+  D   N + +      
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 497 WNLKDIL-FFDLSSNSLDG--PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNI 553
            +    L F +L+ N           +  ++    + +         PS    +  + ++
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSL 597

Query: 554 SLAC 557
           ++ C
Sbjct: 598 NITC 601

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  218 bits (558), Expect = 1e-61
 Identities = 95/510 (18%), Positives = 171/510 (33%), Gaps = 50/510 (9%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
              L  S   L          L +LT L+L+  ++      +  + H+L  L  + N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCK 219
                                     +     +    LK LF  +        + L   K
Sbjct: 95  F-------------------------MAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN-N 278
            L+ L LG   +S     +      L+ +  +NN +      ++  L    NL L  N N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGID-LSLPNVERLNLGLNRFSGTIPSFIT 337
            +  +    F+ +  + +       L     G+   ++ ++              P+   
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 338 N--ASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPTSIGNLSMSLENIY 386
                 +  +++  + F  I  NT           LT   L   LP+ +  LS +L+ + 
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLS-TLKKLV 307

Query: 387 ISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSI-PVTFGRLQKLQGLYLPFNKLAGS-- 443
           +S            SN  +L  L ++GN     +       L+ L+ L L  + +  S  
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 444 IPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP-STFWNLKDI 502
              QL +L+ L +L L+ N+              L   DL   RL      S F NL  +
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 503 LFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI---PSTIGDLKDLQNISLACNG 559
              +LS + LD         L  +  +NL  N+F        +++  L  L+ + L+   
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 560 LEGLIPESFG---YLTELNLSFNKLEGEIP 586
           L  +   +F     +  ++LS N+L     
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (539), Expect = 3e-59
 Identities = 91/505 (18%), Positives = 172/505 (34%), Gaps = 25/505 (4%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG 160
           T L+++   +         +   L TL L+ N L      ++     LK L F    +S 
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
                  N  ++  + L S+ +S  + +        LKVL    N  H      +S  ++
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 221 LQLLNLGFKKLS-GAIPKEISNLTILRKISLRNNKLRGEIPHEIGY--LPNLENLVLGFN 277
              L+L         I     +  + + ++    +    I   +    + +L        
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 278 NLVGVVPAAIFNMSTVKKIYL-LDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI 336
           +   + PA    +  +    + L      + S         ++ L+L     S  +PS +
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297

Query: 337 TNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPTSIGNLSMSLENIYI 387
              S L  L +  N F  +   +           + GN     L T       +L  + +
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 388 SNCNIGGS--IPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP 445
           S+ +I  S      + NLS+L  L+L  N+        F    +L+ L L F +L     
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 446 D-QLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV---LPSTFWNLKD 501
                +L  L  L L+ +    S       L +L+  +L  N          ++   L  
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 502 ILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLE 561
           +    LS   L         +L+++  ++LS N  +      +  LK +  ++LA N + 
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHIS 536

Query: 562 GLIPESFGY---LTELNLSFNKLEG 583
            ++P           +NL  N L+ 
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (521), Expect = 1e-56
 Identities = 77/438 (17%), Positives = 151/438 (34%), Gaps = 22/438 (5%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLK--FLDF 153
           N   + +L + S ++     P+      L  L+  +N +       + ++ +     L+ 
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 154 SDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNY-LHYLKVLFLAKNMFHGQIP 212
           + N ++  +    F+ +    +     +    +   + N  +  L +            P
Sbjct: 187 NGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 213 LALSKCKRLQL--LNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLE 270
                   + +  +NL                + L+++ L    L  E+P  +  L  L+
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304

Query: 271 NLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNR--F 328
            LVL  N    +   +  N  ++  + +  N+       G   +L N+  L+L  +    
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 329 SGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLPTSIGNLS 379
           S      + N S L  L++  N    +               L    L      S     
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 380 MSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV---TFGRLQKLQGLYLP 436
             L+ + +S+  +  S  QL   L  L  L+L+GN           +   L +L+ L L 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTF 496
           F  L+         L  +N + L+ N+ + S    L +L  +   +L SN ++ +LPS  
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLL 543

Query: 497 WNLKDILFFDLSSNSLDG 514
             L      +L  N LD 
Sbjct: 544 PILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  194 bits (494), Expect = 4e-53
 Identities = 91/481 (18%), Positives = 154/481 (32%), Gaps = 50/481 (10%)

Query: 126 TLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGE 185
           T N  +  L+ +IP ++      + L+FS N L                  + +   S  
Sbjct: 16  TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPT----------------IQNTTFSR- 55

Query: 186 LPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTIL 245
                   L  L  L L +   +           RL  L L    L       +S    L
Sbjct: 56  --------LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107

Query: 246 RKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLG 305
           + +      +       +     LE+L LG N++  +     F    +K +   +N+ + 
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IH 166

Query: 306 SFSLGIDLSLPNVERLNLGLNR-FSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG--- 361
             S     SL     L+L LN      I     +++    L+ G      +I   +    
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 362 --------LTGNPLDGVLPTSIGNLS-MSLENIYISNCNIGGSIPQLISNLSNLLLLDLE 412
                         + + P     L  MS+E+I +                S L  LDL 
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 413 GNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS-C 471
              L+  +P     L  L+ L L  NK          +   L  L + GN     + + C
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 472 LGNLTSLRSPDLGSNRLTSV--LPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGI 529
           L NL +LR  DL  + + +         NL  +   +LS N      +        +  +
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 530 NLSRNNFSG-DIPSTIGDLKDLQNISLACNGLEGLIPESFGY---LTELNLSFNKLEGEI 585
           +L+       D  S   +L  L+ ++L+ + L+    + F     L  LNL  N      
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 586 P 586
            
Sbjct: 466 I 466

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  168 bits (427), Expect = 3e-44
 Identities = 74/380 (19%), Positives = 141/380 (37%), Gaps = 25/380 (6%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGN--LSSLTTLNLSHNKLSGDIPPSIFTMHK---LKF 150
           +S    +LN         I   L N  + SL            DI P++F       ++ 
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVES 258

Query: 151 LDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQ 210
           ++   +      S+     S + ++ L +  LS ELP  +   L  LK L L+ N F   
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENL 316

Query: 211 IPLALSKCKRLQLLNLGFKKLSGAIPKE-ISNLTILRKISLRNNKLR--GEIPHEIGYLP 267
             ++ S    L  L++        +    + NL  LR++ L ++ +        ++  L 
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 268 NLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNR 327
           +L++L L +N  + +   A      ++ + L    L    +     +L  ++ LNL  + 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 328 FSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYI 387
              +          L +L++  N F                     S+  L   LE + +
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNI------------QKTNSLQTLG-RLEILVL 483

Query: 388 SNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQ 447
           S C++        ++L  +  +DL  N+LT S       L+ +  L L  N ++  +P  
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSL 542

Query: 448 LCHLARLNTLGLAGNKFSGS 467
           L  L++  T+ L  N    +
Sbjct: 543 LPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 18/110 (16%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
           +   +  +++S   L  +    L +L  +  LNL+ N +S  +P  +  + + + ++   
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 156 NQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKN 205
           N L  + S++ F     L+   ++ +   +    +C     L+ + L+  
Sbjct: 557 NPLDCTCSNIYF-----LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDV 601

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (516), Expect = 5e-56
 Identities = 90/510 (17%), Positives = 165/510 (32%), Gaps = 28/510 (5%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
              +++S   L+        N S L  L+LS  ++      +   +H L  L  + N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKC 218
                    L+S+ ++     KL+      I   L  LK L +A N  H  ++P   S  
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILR----KISLRNNKLRGEIPHEIGYLPNLENLVL 274
             L  ++L +  +      ++  L         + +  N +   I  +      L  L L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTL 211

Query: 275 GFNNLVGVVPAAIF-NMSTVKKIYLLDNSLLGSFSLGI-------DLSLPNVERLNLGLN 326
             N     +      N++ +    L+        +L I        L    ++   L   
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 327 RFSGTIPSFITNASKLVYLDMGTNSFSGI--IPNTIGLTGNPLDGVLPTSIGNLSMS-LE 383
                        + +  + +   S   +  +P         +          L +  L+
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331

Query: 384 NIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQ--KLQGLYLPFNKLA 441
           ++ ++      SI      L +L  LDL  N L+ S   ++  L    L+ L L FN   
Sbjct: 332 SLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA- 388

Query: 442 GSIPDQLCHLARLNTLGLAGNKFSGSIP-SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLK 500
             +      L  L  L    +        S   +L  L   D+            F  L 
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 501 DILFFDLSSNSL-DGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNG 559
            +    ++ NS  D  LS    N   +  ++LS+             L  LQ ++++ N 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 560 LEGLIPESFGY---LTELNLSFNKLEGEIP 586
           L  L    +     L+ L+ SFN++E    
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  180 bits (459), Expect = 2e-48
 Identities = 89/495 (17%), Positives = 167/495 (33%), Gaps = 31/495 (6%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSL 162
                  L   +P  +   SS   ++LS N L      S     +L++LD S  ++    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 163 SSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQ 222
                 L  + ++ L  + +         + L  L+ L   +          + +   L+
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 223 LLNLGFKKLSGA-IPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN---N 278
            LN+    +    +P   SNLT L  + L  N ++    +++ +L     + L  +   N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN 338
            +  +    F    + ++ L  N    +       +L  +    L L  F       I  
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 339 ASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQ 398
            S +  L         +  +   LT              L+ ++  + ++  +I     +
Sbjct: 252 PSIMEGL-------CDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI--KYLE 301

Query: 399 LISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLG 458
            +        L +   +L          L  L+ L L  NK   SI  +   L  L+ L 
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLD 356

Query: 459 LAGNKFSGSIPSCLGNL--TSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPL 516
           L+ N  S S      +L   SLR  DL  N     + + F  L+++   D   ++L    
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT 415

Query: 517 SLD-IGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY----L 571
                 +L  ++ +++S  N   D       L  L  + +A N  +     +       L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 572 TELNLSFNKLEGEIP 586
           T L+LS  +LE    
Sbjct: 476 TFLDLSKCQLEQISW 490

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (454), Expect = 9e-48
 Identities = 82/443 (18%), Positives = 150/443 (33%), Gaps = 35/443 (7%)

Query: 96  NSHRVTALNISSLNLQG-TIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTM-----HKLK 149
               +  LN++   +    +P    NL++L  ++LS+N +   I  +             
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNL 184

Query: 150 FLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHG 209
            LD S N +   +    F    + ++ L  +  S  +       L  L V  L    F  
Sbjct: 185 SLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 210 QIPLALSKCK--------RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPH 261
           +  L + +           +    L +         +   L  +  +SL    +  +   
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLE 301

Query: 262 EIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERL 321
           ++      ++L +    L         ++  +K + L  N    SF      +LP++  L
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGSISFKKV---ALPSLSYL 355

Query: 322 NLGLNRFSGTIPSFITN--ASKLVYLDMGTNSFSGIIPNTIGLT--------GNPLDGVL 371
           +L  N  S +     ++   + L +LD+  N    +  N +GL          + L  V 
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 372 PTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKL 430
             S       L  + IS  N       +   L++L  L + GN    +     F     L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 431 QGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS 490
             L L   +L          L RL  L ++ N       S    L SL + D   NR+ +
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 491 VLPSTFWNLKDILFFDLSSNSLD 513
                    K + FF+L++NS+ 
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  154 bits (390), Expect = 2e-39
 Identities = 90/539 (16%), Positives = 163/539 (30%), Gaps = 100/539 (18%)

Query: 112 GTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSS 171
           G++ P +  + ++T       KLS  +P  I +    K +D S N L             
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKIL---------- 47

Query: 172 VLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKL 231
                                                     + S    LQ L+L   ++
Sbjct: 48  ---------------------------------------KSYSFSNFSELQWLDLSRCEI 68

Query: 232 SGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMS 291
                K    L  L  + L  N ++   P     L +LENLV     L  +    I  + 
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128

Query: 292 TVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKL----VYLDM 347
           T+KK+ +  N +          +L N+  ++L  N       + +    +     + LDM
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 348 GTNSFSGIIPNTIG--------LTGNPLDGVLPTSIGNLSMSLE------NIYISNCNIG 393
             N    I              L GN     +  +       L         +    N+ 
Sbjct: 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 394 GSIPQLISNLSNL--LLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHL 451
              P ++  L ++      L          V F  L  +  + L    +     + +   
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKH 306

Query: 452 ARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNS 511
            +  +L +   +        L  L SL    L  N+ +  +      L  + + DLS N+
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGS--ISFKKVALPSLSYLDLSRNA 361

Query: 512 LD--GPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF- 568
           L   G  S        +  ++LS N     + +    L++LQ++    + L+ +   S  
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 569 ---GYLTELNLSFNKLEGEIPRGGPFANFTA-----------KSFMGNEKLCGLPNLQF 613
                L  L++S+   + +    G F   T+           K    +       NL F
Sbjct: 421 LSLEKLLYLDISYTNTKIDFD--GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (258), Expect = 6e-23
 Identities = 35/187 (18%), Positives = 65/187 (34%), Gaps = 2/187 (1%)

Query: 94  NVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLD 152
           ++ ++ +  L++S  N    +      L  L  L+  H+ L      S F  + KL +LD
Sbjct: 372 DLGTNSLRHLDLSF-NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 153 FSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIP 212
            S          +   L+S+  +++  +        N+      L  L L+K        
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 213 LALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENL 272
                  RLQLLN+    L        + L  L  +    N++         +  +L   
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 273 VLGFNNL 279
            L  N++
Sbjct: 551 NLTNNSV 557

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  172 bits (439), Expect = 5e-46
 Identities = 105/509 (20%), Positives = 191/509 (37%), Gaps = 40/509 (7%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLS 159
                  LN    IP  L    S   L+LS N L   +    F    +L+ LD S  ++ 
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 160 GSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC 218
            ++    + +LS +  + L  + +   L +   + L  L+ L   +          +   
Sbjct: 66  -TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 219 KRLQLLNLGFKKL-SGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN 277
           K L+ LN+    + S  +P+  SNLT L  + L +NK++     ++  L  +  L L  +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 278 ---NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGT--- 331
              N +  +    F    + K+ L +N    +        L  +E   L L  F      
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 332 ----------IPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSM- 380
                     + +      +L YLD   +    +      ++   L  V    + + S  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 381 -SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNK 439
              +++ + NC   G  P L   L +L  L    NK   +   +   L  L+ L L  N 
Sbjct: 304 FGWQHLELVNCKF-GQFPTL--KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNG 358

Query: 440 LA--GSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP-STF 496
           L+  G           L  L L+ N    ++ S    L  L   D   + L  +   S F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 497 WNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTI-GDLKDLQNISL 555
            +L+++++ D+S        +     L  +  + ++ N+F  +    I  +L++L  + L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 556 ACNGLEGLIPESFGYLT---ELNLSFNKL 581
           +   LE L P +F  L+    LN++ N+L
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  167 bits (424), Expect = 6e-44
 Identities = 96/521 (18%), Positives = 173/521 (33%), Gaps = 33/521 (6%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIF-TMHKLKFLDFSDNQL 158
              L++S   L+        +   L  L+LS  ++   I    + ++  L  L  + N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 159 SGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMF-HGQIPLALS 216
             SL+   F  LSS+  +      L+  L      +L  LK L +A N+    ++P   S
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 217 KCKRLQLLNLGFKKLSGAIPKEISNLTILR----KISLRNNKLRGEIPHEIGYLPNLENL 272
               L+ L+L   K+      ++  L  +      + L  N +   I         L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKL 205

Query: 273 VLGFNNLVGVVPAAIFNMSTVKKI------YLLDNSLLGSFSLGIDLSLPNVERLNLGLN 326
            L  N     V           ++         +   L  F       L N+      L 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 327 R---FSGTIPSFITNASKLVYLDMGTNSFSGI--IPNTIGLTGNPLDGVLPTSIGNLSM- 380
               +   I       + +    + + +   +       G     L          L + 
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT--GSIPVTFGRLQKLQGLYLPFN 438
           SL+ +  ++   G +      +L +L  LDL  N L+  G    +      L+ L L FN
Sbjct: 326 SLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 439 KLAGSIPDQLCHLARLNTLGLAGNKFSGSIP-SCLGNLTSLRSPDLGSNRLTSVLPSTFW 497
            +  ++      L +L  L    +        S   +L +L   D+            F 
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 498 NLKDILFFDLSSNSLDGPLSLDI-GNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLA 556
            L  +    ++ NS       DI   LR +  ++LS+       P+    L  LQ +++A
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 557 CNGLEGLIPESFGYLT---ELNLSFNKLEGEIPRGGPFANF 594
            N L+ +    F  LT   ++ L  N  +   PR    + +
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (373), Expect = 2e-37
 Identities = 90/436 (20%), Positives = 159/436 (36%), Gaps = 44/436 (10%)

Query: 96  NSHRVTALNISSLNLQ-GTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKF---- 150
           +   +  LN++   +Q   +P    NL++L  L+LS NK+       +  +H++      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 151 LDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQ 210
           LD S N ++  +    F    +  + L ++  S  +       L  L+V  L    F  +
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 211 IPL------ALSKCKRLQLLNLGFKKLSG---AIPKEISNLTILRKISLRNNKLRGEIPH 261
             L      AL     L +       L      I    + LT +   SL +  +   +  
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD 299

Query: 262 EIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERL 321
                   ++L L               + ++K++    N    +FS    + LP++E L
Sbjct: 300 FSY-NFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFL 352

Query: 322 NLGLNR--FSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLS 379
           +L  N   F G         + L YLD+  N    +  N +GL                 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE---------------- 396

Query: 380 MSLENIYISNCNIGGSIPQ-LISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFN 438
             LE++   + N+       +  +L NL+ LD+       +    F  L  L+ L +  N
Sbjct: 397 -QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 439 KLAGSI-PDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFW 497
               +  PD    L  L  L L+  +     P+   +L+SL+  ++ SN+L SV    F 
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 498 NLKDILFFDLSSNSLD 513
            L  +    L +N  D
Sbjct: 516 RLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (259), Expect = 4e-23
 Identities = 50/235 (21%), Positives = 84/235 (35%), Gaps = 8/235 (3%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
           NL  S +N+ +S   +         +   L +LDL   ++       +  L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV-LPST 495
            N +          L+ L  L       +      +G+L +L+  ++  N + S  LP  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 496 FWNLKDILFFDLSSNSLDGPLSLDIGNLR----VVIGINLSRNNFSGDIPSTIGDLKDLQ 551
           F NL ++   DLSSN +      D+  L     + + ++LS N  +  I         L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH 203

Query: 552 NISLACNGLEGLIPE-SFGYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKL 605
            ++L  N     + +     L  L +    L GE    G    F   +  G   L
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL-GEFRNEGNLEKFDKSALEGLCNL 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  167 bits (425), Expect = 8e-45
 Identities = 92/494 (18%), Positives = 185/494 (37%), Gaps = 71/494 (14%)

Query: 99  RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQL 158
            + +  I+       I      L+      L    ++  +      + ++  L      +
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 159 SGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC 218
             S+  V                           YL+ L  +  + N      P  L   
Sbjct: 59  K-SIDGV--------------------------EYLNNLTQINFSNNQLTDITP--LKNL 89

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN 278
            +L  + +   +++   P  ++NLT L  ++L NN++    P  +  L NL  L L  N 
Sbjct: 90  TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 145

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN 338
           +  +    +  +++++++    N +     L    +L  +ERL++  N+ S    S +  
Sbjct: 146 ISDISA--LSGLTSLQQLS-FGNQVTDLKPLA---NLTTLERLDISSNKVSD--ISVLAK 197

Query: 339 ASKLVYLDMGTNSFSGIIP-------NTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCN 391
            + L  L    N  S I P       + + L GN L  +   ++ +L+ +L ++ ++N  
Sbjct: 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLT-NLTDLDLANNQ 254

Query: 392 IGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHL 451
           I    P  +S L+ L  L L  N+++   P     L  L  L L  N+L    P  + +L
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308

Query: 452 ARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNS 511
             L  L L  N  S   P  + +LT L+     +N+++    S+  NL +I +     N 
Sbjct: 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 512 LDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF--- 568
           +       + NL  +  + L+   ++    +   ++     +      L  + P +    
Sbjct: 365 ISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDG 420

Query: 569 GYLTELNLSFNKLE 582
           G  TE ++++N   
Sbjct: 421 GSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  160 bits (407), Expect = 2e-42
 Identities = 102/490 (20%), Positives = 175/490 (35%), Gaps = 79/490 (16%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
           VT L    L +       +  L++LT +N S+N+L+ DI P +  + KL  +  ++NQ++
Sbjct: 48  VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIA 103

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCK 219
                                         + N L  L  L L  N      P  L    
Sbjct: 104 D--------------------------ITPLAN-LTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNL 279
            L  L L    +S      +S LT L+++S  N          +  L  LE L +  N +
Sbjct: 135 NLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV 189

Query: 280 VGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA 339
                + +  ++ ++ +   +N +     LG    L N++ L+L  N+        + + 
Sbjct: 190 SD--ISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASL 242

Query: 340 SKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQL 399
           + L  LD+  N  S + P                 +  L+  L  + +    I    P  
Sbjct: 243 TNLTDLDLANNQISNLAP-----------------LSGLT-KLTELKLGANQISNISP-- 282

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
           ++ L+ L  L+L  N+L    P     L+ L  L L FN ++   P  +  L +L  L  
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLD 519
             NK S    S L NLT++     G N+++ + P    NL  I    L+  +     +  
Sbjct: 339 YNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT---NAP 391

Query: 520 IGNLRVVIGINLSRNNFSGDI-PSTIGDLKDLQNISLACNGLEGL--IPESFGYLTELNL 576
           +     V   N  +N     I P+TI D        +  N       +  +F     +  
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 451

Query: 577 SFNKLEGEIP 586
                 G + 
Sbjct: 452 GTTTFSGTVT 461

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  163 bits (415), Expect = 5e-43
 Identities = 90/492 (18%), Positives = 188/492 (38%), Gaps = 27/492 (5%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGS 161
            +  S +   +IP  L   +++ +L+LS NK++  I          L+ L    ++++ +
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN-T 64

Query: 162 LSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKCK 219
           +    F +L S+  + L  + LS  L  +    L  LK L L  N +    +        
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 220 RLQLLNLGFKKLSGAIPKE-ISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN 278
            LQ L +G  +    I +   + LT L ++ ++   LR      +  + ++ +L L  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSL--LGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI 336
              ++      +S+V+ + L D +L       L +D     +++L    +  +    + +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 337 TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSI 396
               +   L++    F     N +G        V+       ++++  ++I    +   +
Sbjct: 244 LKLLRY-ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 397 PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQ---LCHLAR 453
             + S L  +  + +E +K+          L+ L+ L L  N +                
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 454 LNTLGLAGNKFS--GSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNS 511
           L TL L+ N           L  L +L S D+  N     +P +    + + F +LSS  
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG 421

Query: 512 LDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF-GY 570
           +     +     + +  +++S NN           L  LQ + ++ N L+ L   S    
Sbjct: 422 IR---VVKTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLKTLPDASLFPV 474

Query: 571 LTELNLSFNKLE 582
           L  + +S N+L+
Sbjct: 475 LLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (377), Expect = 5e-38
 Identities = 96/494 (19%), Positives = 170/494 (34%), Gaps = 51/494 (10%)

Query: 104 NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQ 157
           N+  L L+     TI      +L SL  L+LS N LS  +  S F  +  LK+L+   N 
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNP 109

Query: 158 LSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALS 216
                 +  F NL+++  +R+ + +   E+       L  L  L +           +L 
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 217 KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGF 276
             + +  L L   + +  +      L+ +R + LR+  L       +        +    
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 277 NNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNL-GLNRFSGTIPSF 335
                +   +              N LL      ++LS    +   L GL  F+ +    
Sbjct: 230 FRGSVLTDESF-------------NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 336 ITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGS 395
           ++   K+  + +              +    L   L T    L   ++ I + N  +   
Sbjct: 277 VSELGKVETVTIRRLH----------IPQFYLFYDLSTVYSLLE-KVKRITVENSKVFLV 325

Query: 396 IPQLISNLSNLLLLDLEGNKLTGSIPVT---FGRLQKLQGLYLPFNKLA--GSIPDQLCH 450
                 +L +L  LDL  N +           G    LQ L L  N L       + L  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 451 LARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN 510
           L  L +L ++ N F   +P        +R  +L S  +  V       L+     D+S+N
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNN 441

Query: 511 SLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY 570
           +LD   SL +  L+    + +SRN     +P        L  + ++ N L+ +    F  
Sbjct: 442 NLDS-FSLFLPRLQE---LYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDR 495

Query: 571 ---LTELNLSFNKL 581
              L ++ L  N  
Sbjct: 496 LTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 3e-17
 Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 7/194 (3%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
           SIP  ++  + +  LDL  NK+T            LQ L L  +++     D    L  L
Sbjct: 19  SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 455 NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV-LPSTFWNLKDILFFDLSS-NSL 512
             L L+ N  S    S  G L+SL+  +L  N   ++ + S F NL ++    + +  + 
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 513 DGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLT 572
                +D   L  +  + +   +       ++  ++D+ +++L  +    L+      L+
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 573 ---ELNLSFNKLEG 583
               L L    L  
Sbjct: 197 SVRYLELRDTNLAR 210

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  164 bits (417), Expect = 4e-42
 Identities = 101/529 (19%), Positives = 175/529 (33%), Gaps = 59/529 (11%)

Query: 97  SHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSD 155
           S           NL   +P     L++   L LS N +   +  S F  + +L+ L+   
Sbjct: 3   SFDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGS 57

Query: 156 NQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQI--P 212
                ++    F NL ++  + L S K+   L  +    L +L  L L        +   
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 213 LALSKCKRLQLLNLGFKKLSG-AIPKEISNLTILRKISLRNNKLRGEIPHEIGYL--PNL 269
                 K L  L+L   ++    +      L  L+ I   +N++     HE+  L    L
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 270 ENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFS 329
               L  N+L   V           +  +L+   +             V+      N  S
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW-------TVDITGNFSNAIS 229

Query: 330 GTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISN 389
            +    +  A  ++    G ++      NT                G    S+ ++ +S+
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA--------------GLARSSVRHLDLSH 275

Query: 390 CNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLC 449
             +     ++   L +L +L+L  NK+       F  L  LQ L L +N L         
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 450 HLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSS 509
            L ++  + L  N  +         L  L++ DL  N LT++      ++ DI    LS 
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI--HFIPSIPDI---FLSG 390

Query: 510 NSLDGPLSLDIGNLRVVIGINLSRNNFSG-DIPSTIGDLKDLQNISLACNGLEGLIPESF 568
           N L     +++        I+LS N     DI   +  +  LQ + L  N       +  
Sbjct: 391 NKLVTLPKINLTANL----IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 569 GY----LTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQF 613
                 L +L L  N L+        +  F            GL +LQ 
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFE-----------GLSHLQV 484

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  161 bits (410), Expect = 3e-41
 Identities = 106/535 (19%), Positives = 183/535 (34%), Gaps = 61/535 (11%)

Query: 104 NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNKLSGD-IPPSIFT-MHKLKFLDFSDN 156
           N+  L+L       + P     L  L  L L    LS   +    F  +  L  LD S N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 157 QLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLH--YLKVLFLAKNMFHGQIPL 213
           Q+       +F  L+S+  I   S+++   +  +    L    L    LA N  + ++ +
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 214 ALSKC-KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENL 272
              KC    + + L    +SG       N   +      +N +       +    ++   
Sbjct: 193 DWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 273 VLGFNNLVGVVPAAIFNM--STVKKIYLLDNSLLGSFSLGIDL--SLPNVERLNLGLNRF 328
             GF+N+          +  S+V+ + L    +   FSL   +  +L +++ LNL  N+ 
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV---FSLNSRVFETLKDLKVLNLAYNKI 302

Query: 329 SGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYIS 388
           +            L  L+               L+ N L  +  ++   L   +  I + 
Sbjct: 303 NKIADEAFYGLDNLQVLN---------------LSYNLLGELYSSNFYGLP-KVAYIDLQ 346

Query: 389 NCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQL 448
             +I     Q    L  L  LDL  N LT     T   +  +  ++L  NKL  ++P   
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKIN 400

Query: 449 CHLARLNTLGLAGNKFSG-SIPSCLGNLTSLRSPDLGSNRLTSVLPS-TFWNLKDILFFD 506
                 N + L+ N+     I   L  +  L+   L  NR +S     T      +    
Sbjct: 401 L---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 507 LSSNSLDGPLSLDI-----GNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLE 561
           L  N L      ++       L  +  + L+ N  +   P     L  L+ +SL  N L 
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 562 GLIPESF-GYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPK 615
            L        L  L++S N+L    P    F + +      N+ +C      F  
Sbjct: 518 VLSHNDLPANLEILDISRNQL--LAPNPDVFVSLSVLDITHNKFICECELSTFIN 570

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  120 bits (302), Expect = 5e-28
 Identities = 94/439 (21%), Positives = 150/439 (34%), Gaps = 60/439 (13%)

Query: 103 LNISSLNLQGTIPPQLGNLS------SLTTLNLSHNKLSGDIP------------PSIFT 144
            ++++ +L   +    G          L  L++S N  + DI              S+  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 145 MHKLKFLDFSDNQLSGSLSSVTF---NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLF 201
            H +    F  + +       TF     SSV  + L    +   L   +   L  LKVL 
Sbjct: 239 AHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLN 296

Query: 202 LAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPH 261
           LA N  +     A      LQ+LNL +  L          L  +  I L+ N +      
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 262 EIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERL 321
              +L  L+ L L  N L       I  + ++  I+L  N L+    + +         +
Sbjct: 357 TFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTA-----NLI 406

Query: 322 NLGLNRFSG-TIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSM 380
           +L  NR     I  F+     L  L +  N FS    +    + NP              
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENP-------------- 451

Query: 381 SLENIYISNCNIGGSI-----PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL 435
           SLE +++    +  +        +   LS+L +L L  N L    P  F  L  L+GL L
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511

Query: 436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP-S 494
             N+L     + L   A L  L ++ N+     P       SL   D+  N+       S
Sbjct: 512 NSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFICECELS 566

Query: 495 TFWNLKDILFFDLSSNSLD 513
           TF N  +     ++    D
Sbjct: 567 TFINWLNHTNVTIAGPPAD 585

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (385), Expect = 2e-40
 Identities = 72/371 (19%), Positives = 148/371 (39%), Gaps = 45/371 (12%)

Query: 215 LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
            +         L    ++  +      L  + K+ +   K+   I   I YL NLE L L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNL 73

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSL--LGSFSLGIDLSLPNVERLNLGLNRFSGTI 332
             N +  + P  + N+  +  +Y+  N +  + +       +L N+  L L  +  S   
Sbjct: 74  NGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ-----NLTNLRELYLNEDNISD-- 124

Query: 333 PSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNI 392
            S + N +K+  L++G N     +                  + N++  L  + ++   +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLSP----------------LSNMT-GLNYLTVTESKV 167

Query: 393 GGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLA 452
               P  I+NL++L  L L  N++    P     L  L       N++    P  + ++ 
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 453 RLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
           RLN+L +  NK +   P  L NL+ L   ++G+N+++ +  +   +L  +   ++ SN +
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277

Query: 513 DGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP-ESFGYL 571
                  + NL  +  + L+ N    +    IG L +L  + L+ N +  + P  S   +
Sbjct: 278 SDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKM 335

Query: 572 TELNLSFNKLE 582
              + +   ++
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (373), Expect = 5e-39
 Identities = 79/412 (19%), Positives = 157/412 (38%), Gaps = 69/412 (16%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG 160
             L      +    P    +L+      L    ++  +         +  L  +  +++ 
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVA- 57

Query: 161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
           S+  +                           YL  L+ L L  N      PL  S   +
Sbjct: 58  SIQGI--------------------------EYLTNLEYLNLNGNQITDISPL--SNLVK 89

Query: 221 LQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLV 280
           L  L +G  K++      + NLT LR++ L  + +    P  +  L  + +L LG N+ +
Sbjct: 90  LTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL 145

Query: 281 GVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNAS 340
               + + NM+ +  + + ++ +     +    +L ++  L+L  N+     P  + + +
Sbjct: 146 SD-LSPLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSLSLNYNQIEDISP--LASLT 199

Query: 341 KLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI 400
            L Y     N  + I P                 + N++  L ++ I N  I    P  +
Sbjct: 200 SLHYFTAYVNQITDITP-----------------VANMT-RLNSLKIGNNKITDLSP--L 239

Query: 401 SNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA 460
           +NLS L  L++  N+++  I      L KL+ L +  N++  S    L +L++LN+L L 
Sbjct: 240 ANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLN 295

Query: 461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
            N+        +G LT+L +  L  N +T + P    +L  +   D ++  +
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (334), Expect = 7e-34
 Identities = 75/366 (20%), Positives = 161/366 (43%), Gaps = 43/366 (11%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
                +   ++   +      L S+T L ++  K++  I   I  +  L++L+ + NQ++
Sbjct: 24  GIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQIT 79

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCK 219
             +S ++ NL  + ++ + ++K++      + N L  L+ L+L ++      PL  +   
Sbjct: 80  -DISPLS-NLVKLTNLYIGTNKITD--ISALQN-LTNLRELYLNEDNISDISPL--ANLT 132

Query: 220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNL 279
           ++  LNLG           +SN+T L  +++  +K++   P  I  L +L +L L +N +
Sbjct: 133 KMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189

Query: 280 VGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA 339
             + P  + +++++       N +     +    ++  +  L +G N+ +   P  + N 
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDITPVA---NMTRLNSLKIGNNKITDLSP--LANL 242

Query: 340 SKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQL 399
           S+L +L++GTN  S I                  ++ +L+  L+ + + +  I  S   +
Sbjct: 243 SQLTWLEIGTNQISDI-----------------NAVKDLT-KLKMLNVGSNQI--SDISV 282

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
           ++NLS L  L L  N+L        G L  L  L+L  N +    P  L  L+++++   
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340

Query: 460 AGNKFS 465
           A     
Sbjct: 341 ANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (312), Expect = 6e-31
 Identities = 70/344 (20%), Positives = 134/344 (38%), Gaps = 41/344 (11%)

Query: 245 LRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLL 304
              ++     +    P     L      VL   ++  VV      + ++ K+ +    + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 305 GSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTG 364
               +     L N+E LNL  N+ +   P  ++N  KL  L +GTN  + I         
Sbjct: 58  SIQGIE---YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--------- 103

Query: 365 NPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTF 424
                   +++ NL+ +L  +Y++  NI    P  ++NL+ +  L+L  N     +    
Sbjct: 104 --------SALQNLT-NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PL 151

Query: 425 GRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLG 484
             +  L  L +  +K+    P  + +L  L +L L  N+     P  L +LTSL      
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207

Query: 485 SNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTI 544
            N++T + P    N+  +    + +N +     L   NL  +  + +  N  S    + +
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISD--INAV 261

Query: 545 GDLKDLQNISLACNGLEGLIP-ESFGYLTELNLSFNKLEGEIPR 587
            DL  L+ +++  N +  +    +   L  L L+ N+L  E   
Sbjct: 262 KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME 305

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  145 bits (367), Expect = 3e-37
 Identities = 87/487 (17%), Positives = 167/487 (34%), Gaps = 80/487 (16%)

Query: 114 IPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVL 173
           I P+  + + L       + L+ ++P     +        + ++   +          + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 174 DIRLDSDKLSG------------ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRL 221
             RL                    LP    +    L+ L  + N    ++P      K L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPH----LESLVASCNSLT-ELPELPQSLKSL 116

Query: 222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVG 281
            + N   K LS   P        L  + + NN+L  ++P E+     L+ + +  N+L  
Sbjct: 117 LVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK- 166

Query: 282 VVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASK 341
            +P    ++   + I   +N L     L    +LP +  +    N     +P    +   
Sbjct: 167 KLPDLPPSL---EFIAAGNNQLEELPELQ---NLPFLTAIYADNNSLK-KLPDLPLS--- 216

Query: 342 LVYLDMGTNSFSGI--IPN-----TIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGG 394
           L  +  G N    +  + N     TI    N L   LP    +L    E + + +  +  
Sbjct: 217 LESIVAGNNILEELPELQNLPFLTTIYADNNLL-KTLPDLPPSL----EALNVRDNYLT- 270

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
            +P+L  +L+ L + +   + L+   P        L  L    N++  S+ D    L  L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEEL 322

Query: 455 NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDG 514
           N   ++ NK    +P+    L  L       N L   +P    NLK +    +  N L  
Sbjct: 323 N---VSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQNLKQL---HVEYNPLRE 371

Query: 515 PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTEL 574
                  ++      +L  N+   ++P    +LK L    +  N L    P+    + +L
Sbjct: 372 -FPDIPESVE-----DLRMNSHLAEVPELPQNLKQL---HVETNPLREF-PDIPESVEDL 421

Query: 575 NLSFNKL 581
            ++  ++
Sbjct: 422 RMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (324), Expect = 9e-32
 Identities = 78/432 (18%), Positives = 146/432 (33%), Gaps = 73/432 (16%)

Query: 99  RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQL 158
           +   L +++L L  ++P    +L    +L  S N L+ ++P    ++  L   + +   L
Sbjct: 72  QAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 159 SGSLSSVT---------------FNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLA 203
           S     +                 N S +  I +D++ L  +LP    +    L+ +   
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAG 181

Query: 204 KNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI 263
            N    ++P  L     L  +      L   +P    +L  +      NN L  E   E+
Sbjct: 182 NNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNIL--EELPEL 233

Query: 264 GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNL 323
             LP L  +    N L   +P    ++   + + + DN L       +     ++  L++
Sbjct: 234 QNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLTD-----LPELPQSLTFLDV 284

Query: 324 GLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLT-----GNPLDGVLPTSIGNL 378
             N FS  +     N   L YL+  +N    +      L       N L   LP     L
Sbjct: 285 SENIFS-GLSELPPN---LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL 339

Query: 379 SMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFN 438
               E +  S  ++   +P+L  NL  L    +E N L    P     ++ L+      N
Sbjct: 340 ----ERLIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR-----MN 385

Query: 439 KLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWN 498
                +P+   +L +L+   +  N      P    ++  L    + S R+          
Sbjct: 386 SHLAEVPELPQNLKQLH---VETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHET 438

Query: 499 LKDILFFDLSSN 510
              +       +
Sbjct: 439 TDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (261), Expect = 8e-24
 Identities = 64/356 (17%), Positives = 124/356 (34%), Gaps = 55/356 (15%)

Query: 116 PQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDI 175
           P+L N S L  +++ +N L   +P        L+F+   +NQL   L  +  NL  +  I
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELPELQ-NLPFLTAI 200

Query: 176 RLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAI 235
             D++ L  +LP    +    L+ +    N+        L     L  +      L   +
Sbjct: 201 YADNNSLK-KLPDLPLS----LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TL 252

Query: 236 PKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKK 295
           P    +L  L   ++R+N L  ++P     L  L+     F+ L  + P        +  
Sbjct: 253 PDLPPSLEAL---NVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYY 301

Query: 296 IYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI 355
           +    N +     L      P++E LN+  N+    +P+       L  L    N  + +
Sbjct: 302 LNASSNEIRSLCDL-----PPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEV 352

Query: 356 IPNTIG------LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLL 409
            P          +  NPL    P    ++    E++ +++      + ++     NL  L
Sbjct: 353 -PELPQNLKQLHVEYNPLR-EFPDIPESV----EDLRMNS-----HLAEVPELPQNLKQL 401

Query: 410 DLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS 465
            +E N L    P      + ++ L +   ++            +L       +   
Sbjct: 402 HVETNPLR-EFPDI---PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (261), Expect = 9e-24
 Identities = 67/349 (19%), Positives = 109/349 (31%), Gaps = 60/349 (17%)

Query: 235 IPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVK 294
           I     + T L++    ++ L  E+P E   + +       ++      P        + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 295 KIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSG 354
              L D                    L L     S ++P    +   L  L    NS + 
Sbjct: 62  VSRLRDCLD------------RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT- 104

Query: 355 IIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGN 414
                           LP    +L  SL     +   +    P L         L +  N
Sbjct: 105 ---------------ELPELPQSLK-SLLVDNNNLKALSDLPPLLEY-------LGVSNN 141

Query: 415 KLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGN 474
           +L   +P        L+ + +  N L   +PD    L  +       N+    +P  L N
Sbjct: 142 QLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIA---AGNNQLE-ELPE-LQN 193

Query: 475 LTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRN 534
           L  L +    +N L   LP    +L+ I      +N L+     ++ NL  +  I    N
Sbjct: 194 LPFLTAIYADNNSLKK-LPDLPLSLESI---VAGNNILEELP--ELQNLPFLTTIYADNN 247

Query: 535 NFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEG 583
                +P     L+ L    +  N L  L PE    LT L++S N   G
Sbjct: 248 LLK-TLPDLPPSLEALN---VRDNYLTDL-PELPQSLTFLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.7 bits (236), Expect = 1e-20
 Identities = 56/340 (16%), Positives = 106/340 (31%), Gaps = 63/340 (18%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG 160
             +   +  L     P+L NL  LT +   +N L   +P        L+ +   +N L  
Sbjct: 176 EFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE- 228

Query: 161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
            L  +  NL  +  I  D++ L   LP    +    L+ L +  N     +P        
Sbjct: 229 ELPELQ-NLPFLTTIYADNNLLK-TLPDLPPS----LEALNVRDNYLT-DLPELPQSLTF 281

Query: 221 LQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLV 280
           L +    F  L     +   NL  L   +  +N++R  +       P+LE L +  N L+
Sbjct: 282 LDVSENIFSGL----SELPPNLYYL---NASSNEIR-SLCDL---PPSLEELNVSNNKLI 330

Query: 281 GVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNAS 340
                                         +    P +ERL    N  +  +P    N  
Sbjct: 331 E-----------------------------LPALPPRLERLIASFNHLA-EVPELPQN-- 358

Query: 341 KLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI 400
            L  L +  N      P+      +         +  L  +L+ +++    +    P + 
Sbjct: 359 -LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP 415

Query: 401 SNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKL 440
            ++ +L    +   ++            KL+      +  
Sbjct: 416 ESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  137 bits (348), Expect = 6e-36
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 25/188 (13%)

Query: 662 LRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKS-FEA 720
           L+RFS ++L  A++ FS +N++G G FG VYKGRL DG  VA+K   +      +  F+ 
Sbjct: 17  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQT 76

Query: 721 ECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFD---KLNI 766
           E E++    HRN ++    C     + L            CL     S    D   +  I
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136

Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
            +  A  L YLH      +IH D+K  N+           DFG+ +L+    + + T   
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVR 196

Query: 817 VTIGYMAP 824
            TIG++AP
Sbjct: 197 GTIGHIAP 204

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  133 bits (337), Expect = 2e-34
 Identities = 57/197 (28%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 653 SIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA 712
           S          R    DL  AT  F  + LIG G FG VYKG L DG +VA+K      +
Sbjct: 17  SSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS 76

Query: 713 MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCSLNIF 761
             ++ FE E E +   RH + V  I  C   +   L             L+ ++      
Sbjct: 77  QGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSM 136

Query: 762 D---KLNIMIDVASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRL-LTGD 807
               +L I I  A  L YL   H+  +IH D+K  N          + DFGI +     D
Sbjct: 137 SWEQRLEICIGAARGLHYL---HTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELD 193

Query: 808 RSMIQTETLVTIGYMAP 824
           ++ + T    T+GY+ P
Sbjct: 194 QTHLSTVVKGTLGYIDP 210

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  131 bits (331), Expect = 1e-33
 Identities = 53/337 (15%), Positives = 109/337 (32%), Gaps = 41/337 (12%)

Query: 260 PHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVE 319
            H   +    ENL    +  +      +      ++ Y  D +   S     + + P +E
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQW---QRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 320 RLNLGLNRFSGTIPSFITNAS--KLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGN 377
                  +        + +A+    V L++ +                      P     
Sbjct: 62  TRTGRALK---ATADLLEDATQPGRVALELRSVPLP----------------QFPDQAFR 102

Query: 378 LSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPF 437
           LS  L+++ I    +   +P  +   + L  L L  N L  ++P +   L +L+ L +  
Sbjct: 103 LS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 438 NKLAGSIPDQLC---------HLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRL 488
                 +P+ L           L  L +L L       S+P+ + NL +L+S  + ++ L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

Query: 489 TSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLK 548
           ++ L     +L  +   DL   +         G    +  + L   +    +P  I  L 
Sbjct: 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 549 DLQNISLACNGLEGLIPESFGYLT---ELNLSFNKLE 582
            L+ + L        +P     L     + +  +   
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (329), Expect = 2e-33
 Identities = 56/320 (17%), Positives = 103/320 (32%), Gaps = 22/320 (6%)

Query: 197 LKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLR 256
            + L+   +         LS+ +R    +              +N    +  +     L+
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 257 GEIPHEIGYL--PNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLG-SFSLGIDL 313
                 +     P    L L    L    P   F +S ++ + +    L+    ++    
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQ--- 124

Query: 314 SLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPT 373
               +E L L  N     +P+ I + ++L  L +        +P  +             
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA------STDASG 177

Query: 374 SIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGL 433
               L  +L+++ +    I  S+P  I+NL NL  L +  + L+ ++      L KL+ L
Sbjct: 178 EHQGLV-NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 434 YLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP 493
            L       + P      A L  L L       ++P  +  LT L   DL      S LP
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 494 STFWNLKDILFFDLSSNSLD 513
           S    L       +  +   
Sbjct: 295 SLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  128 bits (324), Expect = 1e-32
 Identities = 64/385 (16%), Positives = 117/385 (30%), Gaps = 71/385 (18%)

Query: 112 GTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSS 171
           G+      + S    L    +         +    +    D +    +   +    N ++
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57

Query: 172 VLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQL--LNLGFK 229
                        ++       L                    L    +     L L   
Sbjct: 58  P------------QIETRTGRALKAT--------------ADLLEDATQPGRVALELRSV 91

Query: 230 KLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFN 289
            L    P +   L+ L+ +++    L  E+P  +     LE L L  N L   +PA+I +
Sbjct: 92  PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS 148

Query: 290 MSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGT 349
           ++ ++++ +     L          LP      L     S            L  L +  
Sbjct: 149 LNRLRELSIRACPELTE--------LPE----PLA----STDASGEHQGLVNLQSLRLEW 192

Query: 350 NSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLL 409
                                LP SI NL  +L+++ I N  +  ++   I +L  L  L
Sbjct: 193 TGIR----------------SLPASIANLQ-NLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 410 DLEGNKLTGSIPVTFGRLQKLQGLYLP-FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSI 468
           DL G     + P  FG    L+ L L   + L  ++P  +  L +L  L L G      +
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 469 PSCLGNLTSLRSPDLGSNRLTSVLP 493
           PS +  L +     +  +    +  
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (322), Expect = 2e-32
 Identities = 52/378 (13%), Positives = 102/378 (26%), Gaps = 69/378 (18%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSL 162
           L              L         + +    +     S    +  +    +   L    
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRALK--- 69

Query: 163 SSVTFNLSSVLDIRLDSDKLSGELPVNICN-YLHYLKVLFLAKNMFHGQIPLALSKCKRL 221
                                      + +        L L       Q P    +   L
Sbjct: 70  ----------------------ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL 106

Query: 222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVG 281
           Q + +    L   +P  +     L  ++L  N LR  +P  I  L  L  L +     + 
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 282 VVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASK 341
            +P  + +     +                   L N++ L L       ++P+ I N   
Sbjct: 165 ELPEPLASTDASGEHQ----------------GLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 342 LVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLIS 401
           L  L +  +  S                 L  +I +L   LE + +  C    + P +  
Sbjct: 208 LKSLKIRNSPLSA----------------LGPAIHHLP-KLEELDLRGCTALRNYPPIFG 250

Query: 402 NLSNLLLLDLEG-NKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA 460
             + L  L L+  + L  ++P+   RL +L+ L L        +P  +  L     + + 
Sbjct: 251 GRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 461 GNKFSGSIPSCLGNLTSL 478
            +  +           + 
Sbjct: 310 PHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 21/146 (14%), Positives = 37/146 (25%), Gaps = 29/146 (19%)

Query: 466 GSIPSCLGNLTSLRSPDL-GSNRLTSVLPSTFWNLKDILFFDLSSNSLDG---------- 514
           GS      + +   +    GS  L           +     D +                
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRP-YHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 515 -----------PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGL 563
                         L+       + + L         P     L  LQ++++   GL  L
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL 119

Query: 564 IPESFGYLT---ELNLSFNKLEGEIP 586
            P++         L L+ N L   +P
Sbjct: 120 -PDTMQQFAGLETLTLARNPLR-ALP 143

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (331), Expect = 4e-33
 Identities = 71/400 (17%), Positives = 144/400 (36%), Gaps = 35/400 (8%)

Query: 211 IPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLE 270
           I   L        +++  +        E   L   + ++ +N+ +R      +     +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 271 NLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSG 330
            L L    +  +   A     T++K+Y+  N++       +  ++P +  L L  N  S 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 331 TIPSFI-TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISN 389
           ++P  I  N  KL  L                ++ N L+ +   +    + SL+N+ +S+
Sbjct: 131 SLPRGIFHNTPKLTTLS---------------MSNNNLERIEDDTFQATT-SLQNLQLSS 174

Query: 390 CNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLC 449
             +   +   +S + +L   ++  N L+     T      ++ L    N +   +   + 
Sbjct: 175 NRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV- 224

Query: 450 HLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSS 509
               L  L L  N  +      L N   L   DL  N L  ++   F  ++ +    +S+
Sbjct: 225 -NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 510 NSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG 569
           N L   L+L    +  +  ++LS N+    +         L+N+ L  N +  L   +  
Sbjct: 282 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHH 339

Query: 570 YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLP 609
            L  L LS N  +        F N    +    ++ C + 
Sbjct: 340 TLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (321), Expect = 8e-32
 Identities = 68/414 (16%), Positives = 141/414 (34%), Gaps = 90/414 (21%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGS 161
           ++I           +   L++   +   ++ +   +P ++     +++ L+ +D Q+   
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-- 82

Query: 162 LSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRL 221
                                  E+      Y H ++ L++  N                
Sbjct: 83  -----------------------EIDTYAFAYAHTIQKLYMGFNAIR------------- 106

Query: 222 QLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFNNL 279
                        +P  +  N+ +L  + L  N L   +P  I    P L  L +  NNL
Sbjct: 107 ------------YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153

Query: 280 VGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA 339
             +        ++++ + L  N L     L +   +P++   N+  N       S +   
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLFHANVSYNLL-----STLAIP 204

Query: 340 SKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQL 399
             +  LD   NS + +                      +++ L  + + + N+      L
Sbjct: 205 IAVEELDASHNSINVVRG-------------------PVNVELTILKLQHNNL-TDTAWL 244

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
             N   L+ +DL  N+L   +   F ++Q+L+ LY+  N+L  ++      +  L  L L
Sbjct: 245 -LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           + N     +         L +  L  N + ++  ST   LK++    LS N  D
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 6e-28
 Identities = 71/402 (17%), Positives = 131/402 (32%), Gaps = 70/402 (17%)

Query: 71  PTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQG----TIPPQ-LGNLSSLT 125
            +NL       +  + +            +T  N   +  +      +P   L +   + 
Sbjct: 14  DSNLQYDCVFYDVHI-DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 126 TLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTF-NLSSVLDIRLDSDKLS 183
            LNL+  ++  +I    F   H ++ L    N +   L    F N+  +  + L+ + LS
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 184 GELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLT 243
             LP  I +    L  L ++ N               LQ L L   +L+  +   +S + 
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186

Query: 244 ILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL 303
            L   ++  N L       +     +E L    N++  VV   +                
Sbjct: 187 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVN--------------- 225

Query: 304 LGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLT 363
                         +  L L  N  +        N   LV +D               L+
Sbjct: 226 ------------VELTILKLQHNNLT-DTAWL-LNYPGLVEVD---------------LS 256

Query: 364 GNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVT 423
            N L+ ++      +   LE +YISN  +  ++      +  L +LDL  N L   +   
Sbjct: 257 YNELEKIMYHPFVKMQ-RLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERN 313

Query: 424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS 465
             +  +L+ LYL  N +  ++         L  L L+ N + 
Sbjct: 314 QPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 26/199 (13%), Positives = 60/199 (30%), Gaps = 7/199 (3%)

Query: 419 SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSL 478
            I            +++           +   L     +    +       + L +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 479 RSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG 538
              +L   ++  +    F     I    +  N++         N+ ++  + L RN+ S 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 539 DIPSTIGDLKDLQNISLACNGLEGLIPESFGYLT---ELNLSFNKLEGEIPRGGPFANFT 595
                  +   L  +S++ N LE +  ++F   T    L LS N+L   +       +  
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL-IPSLF 189

Query: 596 AKSFMGN--EKLCGLPNLQ 612
             +   N    L     ++
Sbjct: 190 HANVSYNLLSTLAIPIAVE 208

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 3/150 (2%)

Query: 436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPST 495
           P       I   L +      + +               L + +     ++ +  +  + 
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 496 FWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISL 555
             + + +   +L+   ++   +        +  + +  N      P    ++  L  + L
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 556 ACNGLEGLIPESFGYLT---ELNLSFNKLE 582
             N L  L    F        L++S N LE
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 2e-32
 Identities = 71/517 (13%), Positives = 161/517 (31%), Gaps = 48/517 (9%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
           N +R     ++  +L+  +     +  ++  L+LS N LS      +    KL+ L+ S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 156 NQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
           N L      +  +LS++  + L+++ +  EL V        ++ L  A N       ++ 
Sbjct: 68  NVLY-ETLDLE-SLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISR---VSC 116

Query: 216 SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG-EIPHEIGYLPNLENLVL 274
           S+ +  + + L   K++     +    + ++ + L+ N++              LE+L L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLS-LPNVERLNLGLNRFSGTIP 333
            +N +   V   +   + +K + L  N L     +G +      V  ++L  N+    I 
Sbjct: 177 QYNFIY-DVKGQVV-FAKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 334 SFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIG 393
             +  +  L + D               L GN           + +  ++ +      + 
Sbjct: 231 KALRFSQNLEHFD---------------LRGNGFHCGTLRDFFSKNQRVQTVAKQ--TVK 273

Query: 394 GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGS----IPDQLC 449
               Q     +   L                 RL  L+          GS    +  +  
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 450 HLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSS 509
           + AR   +     ++   I        +  + +     L   + +      ++      +
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 510 NSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG 569
                          + +   + +      +         +++  +  +    L  E   
Sbjct: 394 VGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEE--- 450

Query: 570 YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLC 606
                N    KL GE       AN T +  +  E+  
Sbjct: 451 -----NARLKKLNGEADLALASANATLQELVVREQNL 482

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (317), Expect = 1e-30
 Identities = 61/368 (16%), Positives = 117/368 (31%), Gaps = 27/368 (7%)

Query: 234 AIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTV 293
           AI +   N    +   + ++ L+  +        N++ L L  N L  +  A +   + +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 294 KKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFS 353
           + + L  N L  +  L    SL  +  L+L  N         +     +  L    N+ S
Sbjct: 61  ELLNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS 112

Query: 354 GIIPNT------IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGG-SIPQLISNLSNL 406
            +  +       I L  N +  +     G  S  ++ + +    I   +  +L ++   L
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 407 LLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSG 466
             L+L+ N +            KL+ L L  NKLA  +  +    A +  + L  NK   
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 467 SIPSCLGNLTSLRSPDLGSNRLTSV-LPSTFWNLKDILFFDLSSNS-LDGPLSLDIGNLR 524
            I   L    +L   DL  N      L   F   + +      +   L G    +     
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 525 VVIGINLSRNNFSGDIPSTIG--DLKDLQNISLACNGLEGLIPESFGY--LTELNLSFNK 580
           +         +        +     K+   +S   +  E L  E        E++    +
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 581 LEGEIPRG 588
               +   
Sbjct: 348 YR-TVIDQ 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (332), Expect = 4e-32
 Identities = 76/406 (18%), Positives = 131/406 (32%), Gaps = 95/406 (23%)

Query: 121 LSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSD 180
            +    LN+  + L+  +P  +     +  L   DN L+                     
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT--------------------- 74

Query: 181 KLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEIS 240
                LP         L+ L ++ N     +P+       L + +     L    P   S
Sbjct: 75  ----SLPALPPE----LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PALPS 121

Query: 241 NLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLD 300
            L  L    +  N+L   +P        L+ L +  N L   +PA    +    K++  +
Sbjct: 122 GLCKL---WIFGNQLT-SLPVLPP---GLQELSVSDNQL-ASLPALPSEL---CKLWAYN 170

Query: 301 NSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTI 360
           N L       + +    ++ L++  N+ + ++P+  +    L  L    N  +       
Sbjct: 171 NQL-----TSLPMLPSGLQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT------- 214

Query: 361 GLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSI 420
                     LP         L+ + +S   +  S+P L S L     L + GN+LT S+
Sbjct: 215 ---------SLPALPSG----LKELIVSGNRL-TSLPVLPSELKE---LMVSGNRLT-SL 256

Query: 421 PVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRS 480
           P+    L     L +  N+L   +P+ L HL+   T+ L GN  S      L  +TS   
Sbjct: 257 PMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA-- 310

Query: 481 PDLGSNRLTSV------LPSTFWNLKDILFFDLSSNSLDGPLSLDI 520
               S  +          P     L       L       P   D 
Sbjct: 311 -PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  130 bits (329), Expect = 1e-31
 Identities = 69/340 (20%), Positives = 130/340 (38%), Gaps = 43/340 (12%)

Query: 246 RKISLRNNKLRGEIPHEIG--YLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL 303
           R      ++ R  +  ++          L +G + L   +P  +     +  + + DN+L
Sbjct: 17  RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNL 73

Query: 304 LGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPN--TIG 361
                  +    P +  L +  N+ + ++P       +L            +      + 
Sbjct: 74  TS-----LPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLW 127

Query: 362 LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP 421
           + GN L   LP     L    + + +S+  +  S+P L S L  L   +   N+LT S+P
Sbjct: 128 IFGNQL-TSLPVLPPGL----QELSVSDNQLA-SLPALPSELCKLWAYN---NQLT-SLP 177

Query: 422 VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSP 481
           +    LQ+L    +  N+LA S+P     L +L       N+ + S+P+    L  L   
Sbjct: 178 MLPSGLQEL---SVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLPALPSGLKEL--- 226

Query: 482 DLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIP 541
            +  NRLTS LP     LK++    +S N L   L +    L     +++ RN  +  +P
Sbjct: 227 IVSGNRLTS-LPVLPSELKEL---MVSGNRLTS-LPMLPSGLLS---LSVYRNQLT-RLP 277

Query: 542 STIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKL 581
            ++  L     ++L  N L     ++   +T        +
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (270), Expect = 2e-24
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 48/243 (19%)

Query: 362 LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP 421
           +  + L   LP  +      +  + I + N+  S+P L   L  L   ++ GN+LT S+P
Sbjct: 47  VGESGL-TTLPDCLPA---HITTLVIPDNNLT-SLPALPPELRTL---EVSGNQLT-SLP 97

Query: 422 VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSP 481
           V    L +L     P   L    P     L +L    + GN+ + S+P     L  L   
Sbjct: 98  VLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLT-SLPVLPPGLQEL--- 146

Query: 482 DLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIP 541
            +  N+L S LP+    L  +      +N L   L +    L+    +++S N  +  +P
Sbjct: 147 SVSDNQLAS-LPALPSELCKL---WAYNNQLTS-LPMLPSGLQE---LSVSDNQLA-SLP 197

Query: 542 STIGDLKDL-----------------QNISLACNGLEGLIPESFGYLTELNLSFNKLEGE 584
           +   +L  L                 + + ++ N L  L P     L EL +S N+L   
Sbjct: 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL-PVLPSELKELMVSGNRLT-S 255

Query: 585 IPR 587
           +P 
Sbjct: 256 LPM 258

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (266), Expect = 6e-24
 Identities = 67/276 (24%), Positives = 109/276 (39%), Gaps = 45/276 (16%)

Query: 317 NVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG------LTGNPLDGV 370
               LN+G +  + T+P  +     +  L +  N+ +  +P          ++GN L   
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT-S 95

Query: 371 LPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKL 430
           LP     L   L             +P L S L  L    + GN+LT S+PV    LQ+L
Sbjct: 96  LPVLPPGLL-ELSIFSNPLT----HLPALPSGLCKL---WIFGNQLT-SLPVLPPGLQEL 146

Query: 431 QGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS 490
               +  N+LA S+P     L +L       N+ + S+P     L  L    +  N+L S
Sbjct: 147 ---SVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSGLQEL---SVSDNQLAS 195

Query: 491 VLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDL 550
            LP+    L  +      +N L   L      L+    + +S N  +  +P    +LK+L
Sbjct: 196 -LPTLPSELYKL---WAYNNRLT-SLPALPSGLKE---LIVSGNRLT-SLPVLPSELKEL 246

Query: 551 QNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIP 586
               ++ N L  L P     L  L++  N+L   +P
Sbjct: 247 ---MVSGNRLTSL-PMLPSGLLSLSVYRNQLT-RLP 277

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 5e-19
 Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 25/184 (13%)

Query: 403 LSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGN 462
            +   +L++  + LT ++P        +  L +P N L  S+P     L  L    ++GN
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91

Query: 463 KFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGN 522
           + + S+P     L  L         L ++       L  +    +  N L   L +    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPS----GLCKL---WIFGNQLTS-LPVLPPG 142

Query: 523 LRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLE 582
           L+    +++S N  +  +P+   +L  L       N L  L P     L EL++S N+L 
Sbjct: 143 LQE---LSVSDNQLA-SLPALPSELCKLW---AYNNQLTSL-PMLPSGLQELSVSDNQLA 194

Query: 583 GEIP 586
             +P
Sbjct: 195 -SLP 197

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 28/237 (11%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG 160
             L   +  L  ++P     L     L++S N+L+  +P       +L  L   +N+L+ 
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLP---SELYKLWAYNNRLT- 214

Query: 161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
              S+    S + ++ +  ++L+  LPV        LK L ++ N     +P+  S    
Sbjct: 215 ---SLPALPSGLKELIVSGNRLT-SLPVLPSE----LKELMVSGNRL-TSLPMLPSG--- 262

Query: 221 LQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN--- 277
           L  L++   +L+  +P+ + +L+    ++L  N L       +  + +            
Sbjct: 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 278 NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSL---PNVERLNLGLNRFSGT 331
                 P     +      +L+                    N +  +L L+R S T
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  127 bits (320), Expect = 1e-30
 Identities = 74/488 (15%), Positives = 166/488 (34%), Gaps = 55/488 (11%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGS 161
           ++I           +   L++   +   ++ +   +P ++     +++ L+ +D Q+   
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-E 89

Query: 162 LSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
           + +  F    ++  + +  + +   LP ++   +  L VL L +N              +
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 221 LQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNL 279
           L  L++    L   I  +     T L+ + L +N+L   +   +  +P+L +  + +N L
Sbjct: 149 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL 204

Query: 280 VGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA 339
                + +     V+++    NS +      +      +  L L  N  +        N 
Sbjct: 205 -----STLAIPIAVEELDASHNS-INVVRGPV---NVELTILKLQHNNLT-DTAWL-LNY 253

Query: 340 SKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQL 399
             LV +D+  N    I+ +                   +   LE +YISN  +  ++   
Sbjct: 254 PGLVEVDLSYNELEKIMYHP---------------FVKMQ-RLERLYISNNRL-VALNLY 296

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
              +  L +LDL  N L   +     +  +L+ LYL  N +  ++         L  L L
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTL 352

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLD 519
           + N +  +    L    ++  P +        +      L+  L    S       L   
Sbjct: 353 SHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDY---QLEHGLCCKESDKPYLDRLLQY 407

Query: 520 IGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFN 579
           I    VV  +  ++   S            + ++    + +            +L    N
Sbjct: 408 IALTSVVEKVQRAQGRCSA--------TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVN 459

Query: 580 KLEGEIPR 587
           +L  E+ +
Sbjct: 460 ELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (316), Expect = 3e-30
 Identities = 72/401 (17%), Positives = 147/401 (36%), Gaps = 37/401 (9%)

Query: 211 IPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNL 269
           I   L        +++  +        E   L   + ++ +N+ +R ++P  +      +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 270 ENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFS 329
           E L L    +  +   A     T++K+Y+  N++       +  ++P +  L L  N  S
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 330 GTIPSFI-TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYIS 388
            ++P  I  N  KL  L                ++ N L+ +   +    + SL+N+ +S
Sbjct: 137 -SLPRGIFHNTPKLTTLS---------------MSNNNLERIEDDTFQATT-SLQNLQLS 179

Query: 389 NCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQL 448
           +  +   +   +S + +L   ++  N L+     T      ++ L    N +   +   +
Sbjct: 180 SNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV 230

Query: 449 CHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLS 508
                L  L L  N  +      L N   L   DL  N L  ++   F  ++ +    +S
Sbjct: 231 N--VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 509 SNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF 568
           +N L   L+L    +  +  ++LS N+    +         L+N+ L  N +  L   + 
Sbjct: 287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTH 344

Query: 569 GYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLP 609
             L  L LS N  +        F N    +    ++ C + 
Sbjct: 345 HTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHCKID 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.4 bits (193), Expect = 4e-15
 Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 6/191 (3%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
            I   +        + ++              L   + +    + +       L    ++
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 455 NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN---S 511
             L L   +             +++   +G N +  + P  F N+  +    L  N   S
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 512 LDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYL 571
           L   +  +   L     +++S NN       T      LQN+ L+ N L  +       L
Sbjct: 138 LPRGIFHNTPKLTT---LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194

Query: 572 TELNLSFNKLE 582
              N+S+N L 
Sbjct: 195 FHANVSYNLLS 205

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  122 bits (307), Expect = 2e-30
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 31/171 (18%)

Query: 680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFH--QNCAMALKSFEAECEVMKNIRHRNHVKRI 737
             LIG G FG VY GR H   EVAI++    ++    LK+F+ E    +  RH N V  +
Sbjct: 38  GELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFM 95

Query: 738 SSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVI 786
            +C +    A+             +      L++     I  ++   + YL   H+  ++
Sbjct: 96  GACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYL---HAKGIL 152

Query: 787 HCDLKPKNVF---------DFGIGRLLTGDRSMIQTETLV----TIGYMAP 824
           H DLK KNVF         DFG+  +    ++  + + L      + ++AP
Sbjct: 153 HKDLKSKNVFYDNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAP 203

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  120 bits (303), Expect = 4e-30
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 28/175 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRN 732
              + +  IG GSFG+V++   H G +VA+K+  +    A  +  F  E  +MK +RH N
Sbjct: 37  CDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPN 95

Query: 733 HVKRISSCSNEDFKAL-----------DCLHSTNC--SLNIFDKLNIMIDVASALEYLHF 779
            V  + + +     ++             LH +     L+   +L++  DVA  + YLH 
Sbjct: 96  IVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH- 154

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           + + P++H +LK  N+           DFG+ RL        ++    T  +MAP
Sbjct: 155 NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAA-GTPEWMAP 208

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  123 bits (311), Expect = 7e-30
 Identities = 79/479 (16%), Positives = 168/479 (35%), Gaps = 21/479 (4%)

Query: 125 TTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSG 184
             ++ S N L   +P  +    K   L+ S N +S   +S   +LS +  + +  +++  
Sbjct: 3   FLVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 185 ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKL-SGAIPKEISNLT 243
            L +++  +   L+ L L+ N       ++      L+ L+L F    +  I KE  N++
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 244 ILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKK--IYLLDN 301
            L+ + L    L       I +L   + L++                   +   I    N
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 302 SLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG 361
                       ++ N+E  N+           F++  +KL      +N     I  T  
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 362 LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP 421
                L  V  T++   S  + N+ +             ++L  L +  +  +       
Sbjct: 236 SFIRILQLVWHTTVWYFS--ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 422 VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSP 481
             +     +       +            ++    L  + N  + ++    G+LT L + 
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 482 DLGSNRLTSV--LPSTFWNLKDILFFDLSSNSLDGPLSLDI-GNLRVVIGINLSRNNFSG 538
            L  N+L  +  +      +K +   D+S NS+            + ++ +N+S N  + 
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 539 DIPSTIGDLKDLQNISLACNGLEGLIPESFG--YLTELNLSFNKLEGEIPRGGPFANFT 595
            I   +     ++ + L  N ++ +  +      L ELN++ N+L+  +P  G F   T
Sbjct: 414 TIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPD-GIFDRLT 468

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (296), Expect = 5e-28
 Identities = 78/416 (18%), Positives = 139/416 (33%), Gaps = 42/416 (10%)

Query: 119 GNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQL-SGSLSSVTFNLSSVLDIR 176
               +L  L+LS N          F  M +LKFL  S   L   S+  +     S + + 
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 177 LDSDKLSGELPVNICN-YLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAI 235
           L       E P  + +     L ++F     FH  + +++     L+L N+         
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 236 PKEISNLT------ILRKISLRNNKLRGEIPHEIG---YLPNLENLVLGFNNLVGVVPAA 286
              +S L        L  ++L N +        I    +   +    +    L G +   
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 287 IFNMSTVK----KIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKL 342
            F+ S        I+ + + + G     I     N+   N  ++          +  S  
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 343 VYLDMGTNSFSGIIPNTI-GLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLIS 401
           ++LD   N  +  +      LT                  LE + +    +   + ++  
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLT-----------------ELETLILQMNQLK-ELSKIAE 368

Query: 402 ---NLSNLLLLDLEGNKLTGSIP-VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTL 457
               + +L  LD+  N ++           + L  L +  N L  +I   L    R+  L
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVL 426

Query: 458 GLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
            L  NK   SIP  +  L +L+  ++ SN+L SV    F  L  +    L +N  D
Sbjct: 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.3 bits (198), Expect = 8e-16
 Identities = 37/188 (19%), Positives = 84/188 (44%), Gaps = 13/188 (6%)

Query: 98  HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIF-TMHKLKFLDFSDN 156
             +   N +    +         +S    L+ S+N L+ D        + +L+ L    N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMN 358

Query: 157 QLS--GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLA 214
           QL     ++ +T  + S+  + +  + +S +     C++   L  L ++ N     +   
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDT 414

Query: 215 LSKC--KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNLEN 271
           + +C   R+++L+L   K+  +IPK++  L  L+++++ +N+L+  +P  I   L +L+ 
Sbjct: 415 IFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472

Query: 272 LVLGFNNL 279
           + L  N  
Sbjct: 473 IWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 8e-12
 Identities = 43/240 (17%), Positives = 94/240 (39%), Gaps = 10/240 (4%)

Query: 70  DPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLG---NLSSLTT 126
             T +   + ++            + +   + AL+I  +       PQ       S++  
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 127 LNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSG-E 185
            N + +            +     LDFS+N L+ ++     +L+ +  + L  ++L    
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 186 LPVNICNYLHYLKVLFLAKNMF-HGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLT 243
               +   +  L+ L +++N   + +     S  K L  LN+    L+  I + +   + 
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424

Query: 244 ILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL 303
           +L    L +NK++  IP ++  L  L+ L +  N L  V       +++++KI+L  N  
Sbjct: 425 VL---DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 6e-29
 Identities = 54/305 (17%), Positives = 106/305 (34%), Gaps = 33/305 (10%)

Query: 234 AIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTV 293
           AI +   N    +   + ++ L+  +        N++ L L  N L  +  A +   + +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 294 KKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFS 353
           + + L  N L  +  L    SL  +  L+L  N         +     +  L    N+ S
Sbjct: 61  ELLNLSSNVLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 354 GIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEG 413
            +                  S G      +NIY++N  I           S +  LDL+ 
Sbjct: 113 RV----------------SCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 414 NKLTG-SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCL 472
           N++   +          L+ L L +N +   +  Q+   A+L TL L+ NK +  +    
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEF 210

Query: 473 GNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLS 532
            +   +    L +N+L   +       +++  FDL  N      +L     +      ++
Sbjct: 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVA 268

Query: 533 RNNFS 537
           +    
Sbjct: 269 KQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (270), Expect = 1e-25
 Identities = 50/312 (16%), Positives = 103/312 (33%), Gaps = 37/312 (11%)

Query: 311 IDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGV 370
           I  +    +   +  +     + S   +A  +  LD               L+GNPL  +
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELD---------------LSGNPLSQI 49

Query: 371 LPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKL 430
               +   +  LE + +S+  +  ++   + +LS L  LDL  N +             +
Sbjct: 50  SAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSI 101

Query: 431 QGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS 490
           + L+   N ++  +            + LA NK +       G  + ++  DL  N + +
Sbjct: 102 ETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 491 V-LPSTFWNLKDILFFDLSSNSLDG-PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLK 548
           V       +   +   +L  N +      +    L+    ++LS N  +  +        
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT---LDLSSNKLA-FMGPEFQSAA 214

Query: 549 DLQNISLACNGLEGLIPESFGY---LTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKL 605
            +  ISL  N L   I ++  +   L   +L  N       R   F+       +  + +
Sbjct: 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTV 272

Query: 606 CGLPNLQFPKCK 617
             L      +C 
Sbjct: 273 KKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 6e-25
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 13/214 (6%)

Query: 371 LPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKL 430
           +     N +   +   +++ ++  ++  L  +  N+  LDL GN L+           KL
Sbjct: 2   IHEIKQNGN-RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 431 QGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS 490
           + L L  N L     D L  L+ L TL L  N         L    S+ +    +N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 491 VLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG-DIPSTIGDLKD 549
           V  S     K+I    L++N +     LD G    V  ++L  N     +          
Sbjct: 114 VSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 550 LQNISLACNGLEGLIPESF-GYLTELNLSFNKLE 582
           L++++L  N +  +  +     L  L+LS NKL 
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (262), Expect = 1e-24
 Identities = 56/326 (17%), Positives = 110/326 (33%), Gaps = 31/326 (9%)

Query: 211 IPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLE 270
           I    ++ K  ++ +   K+   ++ +   N+  L    L  N L      ++     LE
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKEL---DLSGNPLSQISAADLAPFTKLE 61

Query: 271 NLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSG 330
            L L  N L       + ++ST++ + L +N +     L      P++E L+   N  S 
Sbjct: 62  LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ---ELL---VGPSIETLHAANNNIS- 112

Query: 331 TIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGV-LPTSIGNLSM 380
            +    +       + +  N  + +     G         L  N +D V       +   
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD- 169

Query: 381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKL 440
           +LE++ +    I   +   +   + L  LDL  NKL   +   F     +  + L  NKL
Sbjct: 170 TLEHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 441 AGSIPDQLCHLARLNTLGLAGNKFS-GSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNL 499
              I   L     L    L GN F  G++         +++    + +  +        +
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 500 KDILFFD-LSSNSLDGPLSLDIGNLR 524
             +  +       L  P +  +  L 
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 1e-24
 Identities = 64/365 (17%), Positives = 117/365 (32%), Gaps = 82/365 (22%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFS 154
           N +R     ++  +L+  +     +  ++  L+LS N LS  I  +      KL+ L+ S
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 155 DNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLA 214
            N L      +  +LS+                         L+ L L  N         
Sbjct: 67  SNVLY-ETLDLE-SLST-------------------------LRTLDLNNNYVQ-----E 94

Query: 215 LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
           L     ++ L+     +S  +          + I L NNK+      + G    ++ L L
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPS 334
             N +  V  A +                          S   +E LNL  N     +  
Sbjct: 152 KLNEIDTVNFAELAA------------------------SSDTLEHLNLQYNFIY-DVKG 186

Query: 335 FITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGG 394
            +   +KL  LD+ +N  +                 +     + +  +  I + N  +  
Sbjct: 187 QV-VFAKLKTLDLSSNKLA----------------FMGPEFQSAA-GVTWISLRNNKL-V 227

Query: 395 SIPQLISNLSNLLLLDLEGNKLT-GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLAR 453
            I + +    NL   DL GN    G++   F + Q++Q +     K      ++ C +  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 454 LNTLG 458
           L   G
Sbjct: 288 LGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 33/255 (12%)

Query: 332 IPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCN 391
           I     N ++                    +T + L   L +   +   +++ + +S   
Sbjct: 2   IHEIKQNGNRYKIEK---------------VTDSSLKQALASLRQSAW-NVKELDLSGNP 45

Query: 392 IGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHL 451
           +       ++  + L LL+L  N L          L  L+ L L  N +      +L   
Sbjct: 46  LSQISAADLAPFTKLELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVG 98

Query: 452 ARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNS 511
             + TL  A N  S    S      ++    L +N++T +          + + DL  N 
Sbjct: 99  PSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 512 LDG-PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY 570
           +D    +    +   +  +NL  N    D+   +     L+ + L+ N L   +   F  
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQS 212

Query: 571 ---LTELNLSFNKLE 582
              +T ++L  NKL 
Sbjct: 213 AAGVTWISLRNNKLV 227

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  115 bits (290), Expect = 9e-29
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 39/178 (21%)

Query: 680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFH----QNCAMALKSFEAECEVMKNIRHRNHVK 735
           E +IG+G FG VY+     G EVA+K       ++ +  +++   E ++   ++H N + 
Sbjct: 12  EEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIA 70

Query: 736 RISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
               C  E    L             L       +I   +N  + +A  + YLH     P
Sbjct: 71  LRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDI--LVNWAVQIARGMNYLHDEAIVP 128

Query: 785 VIHCDLKPKNVF------------------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           +IH DLK  N+                   DFG+ R       M          +MAP
Sbjct: 129 IIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAG---AYAWMAP 183

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  116 bits (292), Expect = 1e-28
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 37/196 (18%)

Query: 665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEV 724
              ++L+  +       +   G FG V+K +      VA+K+F        +S++ E EV
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQ-LLNEYVAVKIFPIQ---DKQSWQNEYEV 69

Query: 725 --MKNIRHRNHVKRISSCSNEDFKALDCL-------------HSTNCSLNIFDKLNIMID 769
             +  ++H N ++ I +        +D                     ++  +  +I   
Sbjct: 70  YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAET 129

Query: 770 VASALEYLH-------FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ 812
           +A  L YLH         H   + H D+K KNV           DFG+       +S   
Sbjct: 130 MARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGD 189

Query: 813 TETLV-TIGYMAPGLL 827
           T   V T  YMAP +L
Sbjct: 190 THGQVGTRRYMAPEVL 205

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 67/349 (19%), Positives = 137/349 (39%), Gaps = 31/349 (8%)

Query: 97  SHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSD 155
           S +  A+          +P  +   +    L+L  N++   +    F     L+ L+ ++
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNE 65

Query: 156 NQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLA 214
           N +S ++    F NL ++  + L S++L   +P+ +   L  L  L +++N     +   
Sbjct: 66  NIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 215 LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLV 273
                 L+ L +G   L     +  S L  L +++L    L   IP E   +L  L  L 
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR 182

Query: 274 LGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIP 333
           L   N+  +   +   +  +K + +     L + +    L   N+  L++     +  +P
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLT-AVP 240

Query: 334 SF-ITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNI 392
              + +   L +L+               L+ NP+  +  + +  L   L+ I +    +
Sbjct: 241 YLAVRHLVYLRFLN---------------LSYNPISTIEGSMLHELL-RLQEIQLVGGQL 284

Query: 393 GGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKL 440
               P     L+ L +L++ GN+LT ++    F  +  L+ L L  N L
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (290), Expect = 2e-27
 Identities = 67/340 (19%), Positives = 117/340 (34%), Gaps = 25/340 (7%)

Query: 246 RKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLG 305
           R +     +    +P  I        L LG N +  +      +   ++++ L +N +  
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-S 69

Query: 306 SFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGN 365
           +   G   +L N+  L L  NR         T  S L  LD+  N    ++         
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--FQDL 127

Query: 366 PLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TF 424
                          +L+++ + + ++     +  S L++L  L LE   LT SIP    
Sbjct: 128 Y--------------NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEAL 172

Query: 425 GRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLG 484
             L  L  L L    +          L RL  L ++   +  ++        +L S  + 
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 485 SNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTI 544
              LT+V      +L  + F +LS N +       +  L  +  I L     +   P   
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 545 GDLKDLQNISLACNGLEGLIPESFGY---LTELNLSFNKL 581
             L  L+ ++++ N L  L    F     L  L L  N L
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 8e-25
 Identities = 51/287 (17%), Positives = 98/287 (34%), Gaps = 27/287 (9%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT-IGLTGNPLDGVLPTS 374
                L+LG NR          +   L  L++  N  S + P     L            
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF----------- 80

Query: 375 IGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLY 434
                 +L  + + +  +      + + LSNL  LD+  NK+   +   F  L  L+ L 
Sbjct: 81  ------NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134

Query: 435 LPFNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVL 492
           +  N L   I  +    L  L  L L     + SIP+  L +L  L    L    + ++ 
Sbjct: 135 VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIR 192

Query: 493 PSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQN 552
             +F  L  +   ++S       ++ +      +  ++++  N +      +  L  L+ 
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 553 ISLACNGLEGLIPESF---GYLTELNLSFNKLEGEIPRGGPFANFTA 596
           ++L+ N +  +          L E+ L   +L   +     F     
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEP-YAFRGLNY 297

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 6e-13
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 29/182 (15%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG 160
             L +  LN+          L  L  L +SH      + P+      L  L  +   L+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
                                    +P     +L YL+ L L+ N         L +  R
Sbjct: 238 ------------------------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 221 LQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFNN 278
           LQ + L   +L+  +       L  LR +++  N+L   +   +   + NLE L+L  N 
Sbjct: 274 LQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNP 331

Query: 279 LV 280
           L 
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 470 SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGI 529
            C     ++        R  +V        + +   DL  N +      +  +   +  +
Sbjct: 8   ECSAQDRAV---LCHRKRFVAVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEEL 61

Query: 530 NLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY---LTELNLSFNKLEGEIP 586
            L+ N  S   P    +L +L+ + L  N L+ +    F     LT+L++S NK+   + 
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILL 120

Query: 587 RG 588
             
Sbjct: 121 DY 122

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  114 bits (288), Expect = 2e-28
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 41/184 (22%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC-------AMALKSFEAECEVMK 726
            +   E  IG G FG V+KGR + D   VAIK                 + F+ E  +M 
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 727 NIRHRNHVKRISSCSNE-----------DFKALDCLHSTNCSLNIFDKLNIMIDVASALE 775
           N+ H N VK      N            D      L      +    KL +M+D+A  +E
Sbjct: 79  NLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHR--LLDKAHPIKWSVKLRLMLDIALGIE 136

Query: 776 YLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLLTGDRSMIQTETLVTIG 820
           Y+  + + P++H DL+  N+F               DFG+ +      S+  +  L    
Sbjct: 137 YMQ-NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSV--HSV--SGLLGNFQ 191

Query: 821 YMAP 824
           +MAP
Sbjct: 192 WMAP 195

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  113 bits (285), Expect = 6e-28
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRN 732
            + +    IG GSFG+VYKG+ H   +VA+K+ +        L++F+ E  V++  RH N
Sbjct: 24  GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 81

Query: 733 HVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
            +  +   +                   LH++     +   ++I    A  ++YL   H+
Sbjct: 82  ILLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYL---HA 138

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
             +IH DLK  N+F          DFG+    +      Q E L  +I +MAP
Sbjct: 139 KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  112 bits (283), Expect = 7e-28
 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 34/174 (19%)

Query: 680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRI 737
              +     G ++KGR   G ++ +KV           + F  EC  ++   H N +  +
Sbjct: 15  LTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVL 73

Query: 738 SSCSNEDFKAL-------------DCLHS-TNCSLNIFDKLNIMIDVASALEYLHFSHST 783
            +C +                   + LH  TN  ++    +   +D+A  + +LH +   
Sbjct: 74  GACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEP 132

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            +    L  ++V              +        S      +    ++AP  L
Sbjct: 133 LIPRHALNSRSVMIDEDMTARISMADVK------FSFQSPGRMYAPAWVAPEAL 180

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  113 bits (284), Expect = 2e-27
 Identities = 48/199 (24%), Positives = 69/199 (34%), Gaps = 43/199 (21%)

Query: 665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEV 724
            +  +     +      LIG G +G+VYKG L     VA+KVF        ++F  E  +
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLD-ERPVAVKVFSFA---NRQNFINEKNI 58

Query: 725 MK--NIRHRNHVKRISSCSNEDFKALD--CL------------HSTNCSLNIFDKLNIMI 768
            +   + H N  + I               L            + +  + +      +  
Sbjct: 59  YRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAH 118

Query: 769 DVASALEYLH-----FSHSTPVI-HCDLKPKNVF----------DFGIGRLLTGDRSMIQ 812
            V   L YLH       H  P I H DL  +NV           DFG+   LTG+R +  
Sbjct: 119 SVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRP 178

Query: 813 TETLV-------TIGYMAP 824
            E          TI YMAP
Sbjct: 179 GEEDNAAISEVGTIRYMAP 197

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  110 bits (278), Expect = 8e-27
 Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 38/197 (19%)

Query: 662 LRRFSYQDLFRATEKFSKE------NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMA- 714
              FS+ +L   T  F +       N +G G FG VYKG + +   VA+K       +  
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 70

Query: 715 ---LKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCS--L 758
               + F+ E +VM   +H N V+ +   S+ D   L           D L   + +  L
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPL 130

Query: 759 NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGD 807
           +   +  I    A+ + +L   H    IH D+K  N+           DFG+ R      
Sbjct: 131 SWHMRCKIAQGAANGINFL---HENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFA 187

Query: 808 RSMIQTETLVTIGYMAP 824
           ++++ +  + T  YMAP
Sbjct: 188 QTVMTSRIVGTTAYMAP 204

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  110 bits (276), Expect = 1e-26
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 29/172 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           ++   E ++G G+FG V K +     +VAIK          K+F  E   +  + H N V
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIES--ESERKAFIVELRQLSRVNHPNIV 64

Query: 735 KRISSCSNE--------DFKAL-DCLHSTN--CSLNIFDKLNIMIDVASALEYLHFSHST 783
           K   +C N         +  +L + LH             ++  +  +  + YLH     
Sbjct: 65  KLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPK 124

Query: 784 PVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            +IH DLKP N+            DFG    +     M  T    +  +MAP
Sbjct: 125 ALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT--HM--TNNKGSAAWMAP 172

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (281), Expect = 3e-26
 Identities = 88/444 (19%), Positives = 162/444 (36%), Gaps = 64/444 (14%)

Query: 92  TCNVNSHRVTALNISSLNLQG--TIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKL 148
            C+V  +        +  L     +P        +  ++LS N ++ ++  + F+ +  L
Sbjct: 7   ECSVIGYNA---ICINRGLHQVPELPA------HVNYVDLSLNSIA-ELNETSFSRLQDL 56

Query: 149 KFLDFSDNQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMF 207
           +FL          + + TF  LSS++ ++LD ++   +L     N L  L+VL L +   
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNL 115

Query: 208 HGQI--PLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEIG 264
            G +           L++L L    +    P     N+     + L  NK++  I  E  
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDL 174

Query: 265 Y-----------LPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDL 313
                       L ++    +    L        F  +++  + L  N    S +     
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 314 SLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPN---TIGLTGNPLDGV 370
           ++   +  +L L+       SF     K    D    +F G+  +   T  L+ + +  +
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFK----DPDNFTFKGLEASGVKTCDLSKSKIFAL 290

Query: 371 LPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQK 429
           L +   + +  LE + ++   I          L++LL L+L  N L  SI    F  L K
Sbjct: 291 LKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDK 348

Query: 430 LQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLT 489
           L+ L L +N +  ++ DQ                F G        L +L+   L +N+L 
Sbjct: 349 LEVLDLSYNHI-RALGDQS---------------FLG--------LPNLKELALDTNQLK 384

Query: 490 SVLPSTFWNLKDILFFDLSSNSLD 513
           SV    F  L  +    L +N  D
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.0 bits (239), Expect = 5e-21
 Identities = 66/402 (16%), Positives = 125/402 (31%), Gaps = 78/402 (19%)

Query: 221 LQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFNNL 279
           +  ++L    ++       S L  L+ + +        I +     L +L  L L +N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 280 VGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRF-SGTIPSFI-T 337
           +  +    FN                         L N+E L L         +      
Sbjct: 92  L-QLETGAFN------------------------GLANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 338 NASKLVYLDMGTNSFSGIIPN----------TIGLTGNPLDGVLPTSIGNLSMSLENIYI 387
             + L  L +  N+   I P            + LT N +  +    + N          
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-------- 178

Query: 388 SNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQ 447
                       +  LS++ L D+    L         +   +  L L  N    S+  +
Sbjct: 179 -------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 448 LCHLARLNTL-------------GLAGNKFSGSIPSCLGNL--TSLRSPDLGSNRLTSVL 492
                    +                   F          L  + +++ DL  +++ ++L
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291

Query: 493 PSTFWNLKDILFFDLSSNSLDGPLSLDIG---NLRVVIGINLSRNNFSGDIPSTIGDLKD 549
            S F +  D+    L+ N ++    +D      L  ++ +NLS+N           +L  
Sbjct: 292 KSVFSHFTDLEQLTLAQNEIN---KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 550 LQNISLACNGLEGLIPESFGYLT---ELNLSFNKLEGEIPRG 588
           L+ + L+ N +  L  +SF  L    EL L  N+L+  +P G
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 56/319 (17%), Positives = 114/319 (35%), Gaps = 53/319 (16%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIP----------NTIGLTGN 365
            +V  ++L LN  +    +  +    L +L +   +   +I             + L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 366 PLDGVLPTSIGNLSMSLENIYISNCNIGGSI--PQLISNLSNLLLLDLEGNKLTGSIPVT 423
               +   +   L+ +LE + ++ CN+ G++        L++L +L L  N +    P +
Sbjct: 90  QFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 424 -FGRLQKLQGLYLPFNKLAGSIPD-----------QLCHLARLNTLGLAGNKFSGSIPSC 471
            F  +++   L L FNK+  SI +            L  L+ +    +            
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 472 LGNLTSLRSPDLGSNRLTSVLPSTFWNL-------------KDILFFDLSSNSLDGP--- 515
               TS+ + DL  N     +   F++                 +       +   P   
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 516 --LSLDIGNLRVVIGINLSRNNFSGDIPSTI-GDLKDLQNISLACNGLEGLIPESF---G 569
               L+   ++     +LS++     +  ++     DL+ ++LA N +  +   +F    
Sbjct: 268 TFKGLEASGVKTC---DLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323

Query: 570 YLTELNLSFNKLEGEIPRG 588
           +L +LNLS N L G I   
Sbjct: 324 HLLKLNLSQNFL-GSIDSR 341

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 29/132 (21%)

Query: 467 SIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVV 526
            +P    ++  +   DL  N +  +  ++F  L+D+ F  +   +    +          
Sbjct: 24  QVPELPAHVNYV---DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR--------- 71

Query: 527 IGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNLSFNKLEG 583
                          +T   L  L  + L  N    L   +F     L  L L+   L+G
Sbjct: 72  --------------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG 117

Query: 584 EIPRGGPFANFT 595
            +  G  F   T
Sbjct: 118 AVLSGNFFKPLT 129

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  108 bits (272), Expect = 3e-25
 Identities = 75/418 (17%), Positives = 157/418 (37%), Gaps = 51/418 (12%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSL 162
              ++  +Q T       L++LT+L+  ++ ++ D+   I  +  L  L  + N ++ +L
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNIT-TL 79

Query: 163 SSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQ 222
                  +++  +  DS+KL+  L V     L  L  L    N       L +S+   L 
Sbjct: 80  D--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKL---TKLDVSQNPLLT 130

Query: 223 LLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV 282
            LN     L+     ++S+ T L ++    NK   ++   +     L  L   FN +  +
Sbjct: 131 YLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL 185

Query: 283 VPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLS-LPNVERLNLGLNRFSGTIPSFITNASK 341
               +     + ++    N++       +DL+    +  L+   N+ +  I   +T  ++
Sbjct: 186 ---DVSQNKLLNRLNCDTNNITK-----LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQ 234

Query: 342 LVYLDMGTNSFSGIIPN------TIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGS 395
           L Y D   N  + +  +      T+      L  +    + + +  L       C     
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI---DLTHNT-QLIYFQAEGCRKIKE 290

Query: 396 IPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLN 455
           +   +++ + L LLD +   +T  +     +  KL  LYL   +L   +   + H  +L 
Sbjct: 291 LD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLK 342

Query: 456 TLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           +L            S +G + +L +      +  ++   T  N    L   +S + LD
Sbjct: 343 SLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNS--LTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 55/348 (15%), Positives = 114/348 (32%), Gaps = 37/348 (10%)

Query: 239 ISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYL 298
              L  L  +   N+ +  ++   I  L  L  L+   NN+  +    +   + +  +  
Sbjct: 38  EEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLAC 92

Query: 299 LDNSLLGSFSLGIDLS-LPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI-I 356
             N L       +D++ L  +  LN   N+ +  +   ++    L YL+   N+ + I +
Sbjct: 93  DSNKLTN-----LDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLTEIDV 144

Query: 357 PNTIGLTGNPLDGVLPTSIGNLSM--SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGN 414
            +   LT          +  +++    L  +  S   I   +   +S    L  L+ + N
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTN 201

Query: 415 KLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGN 474
            +T    +   +  +L  L    NKL   I   +  L +L     + N  +    S L  
Sbjct: 202 NITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255

Query: 475 LTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRN 534
           LT+L         L  +  +    L                  LD+ +   +  ++    
Sbjct: 256 LTTL---HCIQTDLLEIDLTHNTQLIYFQAEGCRKIK-----ELDVTHNTQLYLLDCQAA 307

Query: 535 NFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLE 582
             + ++   +     L  + L    L  L       L  L+     ++
Sbjct: 308 GIT-ELD--LSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 56/339 (16%), Positives = 110/339 (32%), Gaps = 50/339 (14%)

Query: 267 PNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL-----------LGSFSLG----- 310
            N  + V     +      +   ++T+  +   ++S+           L           
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT 77

Query: 311 -IDLS-LPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPN------TIGL 362
            +DLS   N+  L    N+ +  +   +T  +KL YL+  TN  + +  +       +  
Sbjct: 78  TLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNC 134

Query: 363 TGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV 422
             N L  +    + + +  L  +          +   ++  + L  LD   NK+T    +
Sbjct: 135 ARNTLTEI---DVSHNT-QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---L 185

Query: 423 TFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPD 482
              + + L  L    N +   +   L    +L  L  + NK +  I   +  LT L   D
Sbjct: 186 DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFD 239

Query: 483 LGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
              N LT +  ST   L  +         L     +D+ +   +I           ++  
Sbjct: 240 CSVNPLTELDVSTLSKLTTL---HCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELD- 292

Query: 543 TIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKL 581
            +     L  +     G+  L       L  L L+  +L
Sbjct: 293 -VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 42/289 (14%)

Query: 294 KKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFS 353
                    +  + ++  +  L  +  L+   +  +    + I   + L  L   +N+ +
Sbjct: 21  ASEVAAAFEMQATDTISEE-QLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 354 GIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEG 413
            +                   +   + +L  +   +  +  ++   ++ L+ L  L+ + 
Sbjct: 78  TL------------------DLSQNT-NLTYLACDSNKLT-NLD--VTPLTKLTYLNCDT 115

Query: 414 NKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLG 473
           NKLT    +   +   L  L    N L   I   + H  +L  L    NK    +   + 
Sbjct: 116 NKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VT 167

Query: 474 NLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSR 533
             T L + D   N++T +        K +   +  +N++     LD+     +  ++ S 
Sbjct: 168 PQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSS 221

Query: 534 NNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLE 582
           N  + +I   +  L  L     + N L  L   +   LT L+     L 
Sbjct: 222 NKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.1 bits (185), Expect = 3e-14
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 16/201 (7%)

Query: 382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLA 441
             +   +   +  +       L+ L  LD   + +T  +     +L  L  L    N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT 77

Query: 442 GSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKD 501
            ++   L     L  L    NK + ++   +  LT L   +  +N+LT +          
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPL 128

Query: 502 ILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLE 561
           + + + + N+L     +D+ +   +  ++   N     +   +     L  +  + N + 
Sbjct: 129 LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 562 GLIPESFGYLTELNLSFNKLE 582
            L       L  LN   N + 
Sbjct: 184 ELDVSQNKLLNRLNCDTNNIT 204

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  104 bits (262), Expect = 8e-25
 Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 41/180 (22%)

Query: 680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEV--MKNIRHRNHVKRI 737
              +G G +G V++G    G  VA+K+F        KS+  E E+     +RH N +  I
Sbjct: 13  LECVGKGRYGEVWRGSWQ-GENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFI 68

Query: 738 SSCSNEDFKALDC---------------LHSTNCSLNIFDKLNIMIDVASALEYLH---- 778
           +S       +                  L  T  +L+    L I++ +AS L +LH    
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIF 126

Query: 779 -FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG---YMAP 824
                  + H DLK KN+           D G+  + +   + +       +G   YMAP
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAP 186

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  103 bits (260), Expect = 2e-24
 Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 38/185 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
                  ++G G FG   K    + G  + +K   +      ++F  E +VM+ + H N 
Sbjct: 10  SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNV 69

Query: 734 VKRISSCSNED-------FKA----LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
           +K I     +        +         + S +       +++   D+AS + YL   HS
Sbjct: 70  LKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYL---HS 126

Query: 783 TPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLV-------------TI 819
             +IH DL   N          V DFG+ RL+  +++  +    +               
Sbjct: 127 MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNP 186

Query: 820 GYMAP 824
            +MAP
Sbjct: 187 YWMAP 191

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  102 bits (255), Expect = 1e-23
 Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 41/185 (22%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEV--MKNIRHRN 732
           ++      IG G +G V+ G+   G +VA+KVF         S+  E E+     +RH N
Sbjct: 37  KQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHEN 92

Query: 733 HVKRISSCSNEDFKALDC---------------LHSTNCSLNIFDKLNIMIDVASALEYL 777
            +  I++                          L ST  +L+    L +     S L +L
Sbjct: 93  ILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHL 150

Query: 778 H-----FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG-- 820
           H           + H DLK KN+           D G+      D + +       +G  
Sbjct: 151 HTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTK 210

Query: 821 -YMAP 824
            YM P
Sbjct: 211 RYMPP 215

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  102 bits (255), Expect = 1e-23
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 41/180 (22%)

Query: 680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEV--MKNIRHRNHVKRI 737
           +  IG G FG V++G+   G EVA+K+F        +S+  E E+     +RH N +  I
Sbjct: 47  QESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFI 102

Query: 738 SSCSNEDFKALDC---------------LHSTNCSLNIFDKLNIMIDVASALEYLH---- 778
           ++ + ++                     L+    ++     + + +  AS L +LH    
Sbjct: 103 AADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVE--GMIKLALSTASGLAHLHMEIV 160

Query: 779 -FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG---YMAP 824
                  + H DLK KN+           D G+          I       +G   YMAP
Sbjct: 161 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP 220

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (255), Expect = 1e-22
 Identities = 83/525 (15%), Positives = 177/525 (33%), Gaps = 57/525 (10%)

Query: 84  SVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIF 143
           ++   +G     ++   + ++ S+ NL   +P           L+LS N +S ++     
Sbjct: 17  ALALIVGSMTPFSNELESMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSIS-ELRMPDI 72

Query: 144 T-MHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFL 202
           + + +L+ L  S N++                           L  ++  +   L+ L +
Sbjct: 73  SFLSELRVLRLSHNRIR-------------------------SLDFHVFLFNQDLEYLDV 107

Query: 203 AKNMFHGQIPLALSKCKRLQLLNLGFKKL-SGAIPKEISNLTILRKISLRNNKLRGEIPH 261
           + N       ++      L+ L+L F       + KE  NLT L  + L   K R     
Sbjct: 108 SHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 262 EIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERL 321
            + +L     L+   +  +         +     ++L+ +     FS+ +++S+  +  L
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS-LFSVQVNMSVNALGHL 223

Query: 322 NLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMS 381
            L   + +      +      +       + +      I  T      +           
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL---QHIETTWKCSVKLFQF---FWPRP 277

Query: 382 LENIYISNCNIGGSIPQLI-----SNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
           +E + I N  I   I +       + L +L++  ++      S    +    ++    L 
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTF 496
            +             +    L    N F+ S+      L  L++  L  N L +      
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 497 W--NLKDILFFDLSSNSL-DGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNI 553
              N+  +   D+S NSL              ++ +NLS N  +G +   +     ++ +
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVL 455

Query: 554 SLACNGLEGLIPESF---GYLTELNLSFNKLEGEIPRGGPFANFT 595
            L  N +  + P+       L ELN++ N+L+  +P  G F   T
Sbjct: 456 DLHNNRIMSI-PKDVTHLQALQELNVASNQLK-SVPD-GVFDRLT 497

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  100 bits (251), Expect = 3e-22
 Identities = 75/431 (17%), Positives = 149/431 (34%), Gaps = 41/431 (9%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQL- 158
             L++S   LQ  I      ++SL  L+LS N          F  + KL FL  S  +  
Sbjct: 103 EYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 159 SGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICN-YLHYLKVLFLAKNMFHGQIPLALSK 217
              L  V     S + + L S  + G    ++       L ++F   ++F  Q+ ++++ 
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 218 CKRLQLLNLGFKKLSGA----IPKEISNLTILRKISLRNNKLRGEIPHEIG---YLPNLE 270
              LQL N+     +         E++    L  ++L++ +   +   ++    +   +E
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 271 NLVLGFNNLVGVVPAAIFNMSTVK----KIYLLDNSLLGSFSLGIDLSLPNVERLNLGLN 326
            L +    +   +    F  S        I  + N +       +      +    L ++
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 327 RFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIY 386
                      + S   +L+   N F+  +                         L+ + 
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR----------------LQTLI 383

Query: 387 ISNCNIGGSIPQLISNLSNLLLLDLEGNKLT----GSIPVTFGRLQKLQGLYLPFNKLAG 442
           +    +  +  ++     N+  L+     L      +   T    + +  L L  N L G
Sbjct: 384 LQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442

Query: 443 SIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDI 502
           S+   L    ++  L L  N+   SIP  + +L +L+  ++ SN+L SV    F  L  +
Sbjct: 443 SVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499

Query: 503 LFFDLSSNSLD 513
            +  L  N  D
Sbjct: 500 QYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 91/502 (18%), Positives = 162/502 (32%), Gaps = 70/502 (13%)

Query: 100 VTALNISSLNLQGTIPPQ-LGNLSSLTTLNLSHNKLSGDIPPSIF-TMHKLKFLDFSDNQ 157
             AL++S  ++   +    +  LS L  L LSHN++   +   +F     L++LD S N+
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 158 LSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLA--L 215
           L  ++S                           C  +  L+ L L+ N F   +P+    
Sbjct: 112 LQ-NIS---------------------------CCPMASLRHLDLSFNDFD-VLPVCKEF 142

Query: 216 SKCKRLQLLNLGFKKLSGAIPKEISNL-TILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
               +L  L L   K        +++L      + L +  ++G     +    N   L L
Sbjct: 143 GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHL 201

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSL----LGSFSLGIDLSLPNVERLNLGLNRFSG 330
            F+           +++ +  + L +  L           +         LN+ L     
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 331 TIPSFI-----TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENI 385
           T    +          + YL++   + +  I           D    T       SL   
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERI-----------DREEFTYSETALKSLMIE 310

Query: 386 YISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP 445
           ++ N     S   L S  + + +  L  +       V          L    N    S+ 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 446 DQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNL----KD 501
                L RL TL L  N    +         ++ S +     L S+    +       + 
Sbjct: 371 QGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429

Query: 502 ILFFDLSSNSL-DGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGL 560
           IL  +LSSN L           ++V   ++L  N     IP  +  L+ LQ +++A N L
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPPKVKV---LDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

Query: 561 EGLIPESFGY---LTELNLSFN 579
           + +    F     L  + L  N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIF-TMHKLKFLDFSDNQL 158
           +    +S  +          + SS T LN + N  + D       T+ +L+ L    N L
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGL 389

Query: 159 SGSLSSVTFNLSSVLDIRLDS---DKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
             +   V     ++  +       + L+       C +   + VL L+ NM  G +   L
Sbjct: 390 K-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 216 SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVL 274
               ++++L+L   ++  +IPK++++L  L+++++ +N+L+  +P  +   L +L+ + L
Sbjct: 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504

Query: 275 GFNN 278
             N 
Sbjct: 505 HDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 42/282 (14%), Positives = 97/282 (34%), Gaps = 7/282 (2%)

Query: 23  ITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQALLALKAHISYDPTNLLAQNSTSN 82
           +   N       L+       ++ V      TT + ++   +         L   N T  
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 83  TSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSI 142
             +              +   ++ +     +        + +    LS +          
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 143 FTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKL-SGELPVNICNYLHYLKVLF 201
            +     FL+F+ N  + S+      L  +  + L  + L +      +   +  L+ L 
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 202 LAKNMF-HGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEI 259
           ++ N           +  + + +LNL    L+G++ + +   + +L    L NN++   I
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL---DLHNNRIM-SI 465

Query: 260 PHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDN 301
           P ++ +L  L+ L +  N L  V       +++++ I+L DN
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 61/275 (22%), Positives = 92/275 (33%), Gaps = 33/275 (12%)

Query: 245 LRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL- 303
             K+      LR E+P  I    N   L L  N +  +   +  ++  ++ + L  N + 
Sbjct: 45  FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 304 ---LGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT- 359
              +G+F+      L N+  L L  NR +          SKL  L +  N    I     
Sbjct: 102 TIEIGAFN-----GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156

Query: 360 IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGNKLTG 418
             +                  SL  + +        I +     LSNL  L+L    L  
Sbjct: 157 NRIP-----------------SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198

Query: 419 SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSL 478
            IP     L KL  L L  N L+   P     L  L  L +  ++      +   NL SL
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 479 RSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
              +L  N LT +    F  L  +    L  N  +
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 7e-21
 Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 42/281 (14%)

Query: 85  VCNWIGITCNVNSHRVTAL------NISSLNLQG----TIPP-QLGNLSSLTTLNLSHNK 133
            C+            +  +      N   LNL       I      +L  L  L LS N 
Sbjct: 40  SCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 134 LSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICN 192
           +   I    F  +  L  L+  DN+L+ ++ +  F                         
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAF------------------------V 133

Query: 193 YLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLR 251
           YL  LK L+L  N        A ++   L+ L+LG  K    I +     L+ LR ++L 
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 252 NNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGI 311
              LR EIP+ +  L  L+ L L  N+L  + P +   +  ++K++++ +  +       
Sbjct: 194 MCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNA 250

Query: 312 DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSF 352
             +L ++  +NL  N  +       T    L  + +  N +
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 11/218 (5%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
            +S +   + +    I         +L +L +L L  N +       F  L  L  L L 
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 437 FNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGS-NRLTSVLPS 494
            N+L  +IP+    +L++L  L L  N            + SLR  DLG   RL+ +   
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 495 TFWNLKDILFFDLSSNSLDG-PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNI 553
            F  L ++ + +L+  +L   P    +  L     ++LS N+ S   P +   L  LQ +
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDE---LDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 554 SLACNGLEGLIPESF---GYLTELNLSFNKLEGEIPRG 588
            +  + ++ +   +F     L E+NL+ N L   +P  
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD 273

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 56/246 (22%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT-IGLTGNPLDGVLPTS 374
            N   LNL  N+      +   +   L  L +  N    I      GL            
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA----------- 112

Query: 375 IGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGL 433
                 +L  + + +  +          LS L  L L  N +  SIP   F R+  L+ L
Sbjct: 113 ------NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL 165

Query: 434 YLP-FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVL 492
            L    +L+         L+ L  L LA       IP+ L  L  L   DL  N L+++ 
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIR 223

Query: 493 PSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQN 552
           P +F  L  +    +  + +         NL+ ++ INL+ NN +         L  L+ 
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

Query: 553 ISLACN 558
           I L  N
Sbjct: 284 IHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 18/210 (8%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
            +P  IS  +N  LL+L  N++      +F  L+ L+ L L  N +          LA L
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 455 NTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSS-NSL 512
           NTL L  N+ + +IP+     L+ L+   L +N + S+    F  +  +   DL     L
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 513 DGPLSLDIG---NLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF- 568
                +  G    L  +  +NL+  N   +IP  +  L  L  + L+ N L  + P SF 
Sbjct: 174 S---YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 569 --GYLTELNLSFNKLEGEIPRGGPFANFTA 596
              +L +L +  ++++  I R   F N  +
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIER-NAFDNLQS 256

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 104 NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSD-N 156
           N+++L L      TIP      LS L  L L +N +   IP   F  +  L+ LD  +  
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171

Query: 157 QLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
           +LS  +S   F  LS++  + L    L     +     L  L  L L+ N      P + 
Sbjct: 172 RLS-YISEGAFEGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 216 SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVL 274
                LQ L +   ++         NL  L +I+L +N L   +PH++   L +LE + L
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHL 286

Query: 275 GFNNLV 280
             N   
Sbjct: 287 HHNPWN 292

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 52/298 (17%)

Query: 246 RKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL-L 304
            +I   +  L   +P  I    +   L L  N L  +       ++ + K+ L  N L  
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 305 GSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTG 364
                  D    +++ L+L  N    T+ S      +L +LD   ++   +         
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE------- 118

Query: 365 NPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTF 424
                                             +  +L NL+ LD+       +    F
Sbjct: 119 --------------------------------FSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 425 GRLQKLQGLYLPFNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDL 483
             L  L+ L +  N    +        L  L  L L+  +     P+   +L+SL+  ++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 484 GSNRLTSVLPSTFWNLKDILFFDLSSNSL----DGPLSLDIGNLRVVIGINLSRNNFS 537
             N   S+    +  L  +   D S N +       L     +L     +NL++N+F+
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 52/272 (19%), Positives = 87/272 (31%), Gaps = 45/272 (16%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSI 375
            +  RL L  N+            ++L  L + +N  S     +    G           
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT--------- 78

Query: 376 GNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLY 434
                SL+ + +S   +  ++      L  L  LD + + L        F  L+ L  L 
Sbjct: 79  -----SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 435 LPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLP 493
           +       +       L+ L  L +AGN F  +        L +L   DL   +L  + P
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

Query: 494 STFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNI 553
           + F +L                      +L+V   +N+S NNF          L  LQ +
Sbjct: 193 TAFNSLS---------------------SLQV---LNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 554 SLACNGLEGLIPESF----GYLTELNLSFNKL 581
             + N +     +        L  LNL+ N  
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 39/223 (17%), Positives = 73/223 (32%), Gaps = 17/223 (7%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT--GSIPVTFGRLQKLQGLY 434
            +  S   + + +  +      +   L+ L  L L  N L+  G    +      L+ L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 435 LPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSC--LGNLTSLRSPDLGSNRLTSVL 492
           L FN +  ++      L +L  L    +     +       +L +L   D+         
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 493 PSTFWNLKDILFFDLSSNSLDGPLSLDI----GNLRVVIGINLSRNNFSGDIPSTIGDLK 548
              F  L  +    ++ NS       DI     NL     ++LS+       P+    L 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF---LDLSQCQLEQLSPTAFNSLS 199

Query: 549 DLQNISLACNGLEGLIPESFGY---LTELNLSFNKLEGEIPRG 588
            LQ ++++ N    L    +     L  L+ S N +     + 
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQ 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 55/261 (21%), Positives = 99/261 (37%), Gaps = 17/261 (6%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLS 159
           T +  +S  L  ++P  +   SS T L L  NKL   +P  +F  + +L  L  S N LS
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 160 -GSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPL-ALS 216
                S +    +S+  + L  + +   +  N    L  L+ L    +            
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 217 KCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVL 274
             + L  L++            I + L+ L  + +  N  +     +I   L NL  L L
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIP- 333
               L  + P A  ++S+++ + +  N+   S        L +++ L+  LN    T   
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240

Query: 334 -SFITNASKLVYLDMGTNSFS 353
                  S L +L++  N F+
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 42/212 (19%), Positives = 89/212 (41%), Gaps = 9/212 (4%)

Query: 98  HRVTALNISS--LNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
            ++T L++SS  L+ +G         +SL  L+LS N +   +  +   + +L+ LDF  
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110

Query: 156 NQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQI-PL 213
           + L        F +L +++ + +            I N L  L+VL +A N F     P 
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 214 ALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEIGYLPNLENL 272
             ++ + L  L+L   +L   +     ++L+ L+ +++ +N            L +L+ L
Sbjct: 170 IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 273 VLGFNNLVGVVPAAIFNMST-VKKIYLLDNSL 303
               N+++      + +  + +  + L  N  
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.1 bits (247), Expect = 5e-22
 Identities = 54/275 (19%), Positives = 92/275 (33%), Gaps = 33/275 (12%)

Query: 245 LRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL- 303
             K+      L  E+P  I    N   L L  NN+  +      ++  ++ + L  NS+ 
Sbjct: 56  FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 304 ---LGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT- 359
              +G+F+      L ++  L L  N  +          SKL  L +  N    I     
Sbjct: 113 QIEVGAFN-----GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 360 IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGNKLTG 418
             +                  SL  + +        I +     L NL  L+L    +  
Sbjct: 168 NRVP-----------------SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209

Query: 419 SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSL 478
            +P     L  L+ L +  N      P     L+ L  L +  ++ S    +    L SL
Sbjct: 210 DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 479 RSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
              +L  N L+S+    F  L+ ++   L  N  +
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 57/281 (20%), Positives = 100/281 (35%), Gaps = 42/281 (14%)

Query: 85  VCNWIGITCNVNSHRVTAL------NISSLNLQG----TIPP-QLGNLSSLTTLNLSHNK 133
            C+            ++ +      N   LNL       I      +L  L  L L  N 
Sbjct: 51  SCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 134 LSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICN 192
           +   I    F  +  L  L+  DN L+  + S  F                         
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAF------------------------E 144

Query: 193 YLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLR 251
           YL  L+ L+L  N        A ++   L  L+LG  K    I +     L  L+ ++L 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 252 NNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGI 311
              ++ ++P+ +  L  LE L +  N+   + P +   +S++KK++++++  +       
Sbjct: 205 MCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNA 261

Query: 312 DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSF 352
              L ++  LNL  N  S       T    LV L +  N +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 49/219 (22%), Positives = 83/219 (37%), Gaps = 13/219 (5%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYL 435
            +  +   + +   NI         +L +L +L L  N +   I V  F  L  L  L L
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130

Query: 436 PFNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGS-NRLTSVLP 493
             N L   IP     +L++L  L L  N            + SL   DLG   +L  +  
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 494 STFWNLKDILFFDLSSNSLDG-PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQN 552
             F  L ++ + +L   ++   P    +  L     + +S N+F    P +   L  L+ 
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEE---LEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 553 ISLACNGLEGLIPESF---GYLTELNLSFNKLEGEIPRG 588
           + +  + +  +   +F     L ELNL+ N L   +P  
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHD 284

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 53/224 (23%), Positives = 85/224 (37%), Gaps = 11/224 (4%)

Query: 362 LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP 421
           L  N +  +   +  +L   LE + +   +I        + L++L  L+L  N LT  IP
Sbjct: 82  LMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIP 139

Query: 422 V-TFGRLQKLQGLYLPFNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPS-CLGNLTSL 478
              F  L KL+ L+L  N +  SIP      +  L  L L   K    I       L +L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 479 RSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG 538
           +  +LG   +  +       L  +   ++S N            L  +  + +  +  S 
Sbjct: 199 KYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 539 DIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNLSFN 579
              +    L  L  ++LA N L  L  + F    YL EL+L  N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 104 NISSLNLQG---TIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLS 159
           N+  LNL        P L  L  L  L +S N    +I P  F  +  LK L   ++Q+S
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 160 GSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFH 208
             +    F  L+S++++ L  + LS  LP ++   L YL  L L  N ++
Sbjct: 256 -LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 56/296 (18%), Positives = 106/296 (35%), Gaps = 57/296 (19%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPN---------TIGLTGNP 366
           P+   L+L  N+ +        N   L  L +  N  S I P           + L+ N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 367 LDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGNKLTGSI--PVT 423
           L   LP     +  +L+ + +    I   + + + + L+ +++++L  N L  S      
Sbjct: 112 LK-ELPE---KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPD 482
           F  ++KL  + +    +  +IP  L     L  L L GNK +  + +  L  L +L    
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLG 222

Query: 483 LGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
           L  N +++V   +  N   +    L++N L                           +P 
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-------------------------KVPG 257

Query: 543 TIGDLKDLQNISLACNGLEGLIPESFGY---------LTELNLSFNKLE-GEIPRG 588
            + D K +Q + L  N +  +    F            + ++L  N ++  EI   
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 65/345 (18%), Positives = 124/345 (35%), Gaps = 54/345 (15%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLS 159
             +  S L L+  +P  L        L+L +NK++ +I    F  +  L  L   +N++S
Sbjct: 34  RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS 89

Query: 160 GSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC 218
             +S   F  L  +  + L  ++L  ELP  +      L+ L + +N          +  
Sbjct: 90  -KISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGL 144

Query: 219 KRLQLLNLGFKKL-SGAIPKEI-SNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGF 276
            ++ ++ LG   L S  I       +  L  I + +  +   IP   G  P+L  L L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDG 201

Query: 277 NNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI 336
           N +  V  A++  ++ + K+ L  NS + +   G   + P++  L+L  N+    +P  +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 337 TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSI 396
            +   +  + +  N+ S I  N     G                                
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPG-------------------------------- 287

Query: 397 PQLISNLSNLLLLDLEGNKLTGSI--PVTFGRLQKLQGLYLPFNK 439
               +  ++   + L  N +      P TF  +     + L   K
Sbjct: 288 --YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 26/255 (10%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
           +L      + + N  I         NL NL  L L  NK++   P  F  L KL+ LYL 
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVL--PS 494
            N+L   +P+++     L  L +  N+ +    S    L  +   +LG+N L S      
Sbjct: 109 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 495 TFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNIS 554
            F  +K + +  ++  ++    ++  G    +  ++L  N  +    +++  L +L  + 
Sbjct: 166 AFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 555 LACNGLEGLIPESF---GYLTELNLSFNKLEGEIPRG--------------GPFANFTAK 597
           L+ N +  +   S     +L EL+L+ NKL  ++P G                 +   + 
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 598 SFMGNEKLCGLPNLQ 612
            F          +  
Sbjct: 282 DFCPPGYNTKKASYS 296

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 14/199 (7%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
            +P+ +    +  LLDL+ NK+T      F  L+ L  L L  NK++   P     L +L
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 455 NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL-D 513
             L L+ N+    +P  +    +L+   +  N +T V  S F  L  ++  +L +N L  
Sbjct: 103 ERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 514 GPLSLDI-GNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---G 569
             +       ++ +  I ++  N +  IP   G    L  + L  N +  +   S     
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLN 216

Query: 570 YLTELNLSFNKLEGEIPRG 588
            L +L LSFN +   +  G
Sbjct: 217 NLAKLGLSFNSIS-AVDNG 234

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 9/186 (4%)

Query: 405 NLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKF 464
           +L ++      L   +P           L L  NK+         +L  L+TL L  NK 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 465 SGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLR 524
           S   P     L  L    L  N+L  +       L+++    +  N +          L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLN 145

Query: 525 VVIGINLSRNNFSGDI--PSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLE 582
            +I + L  N              +K L  I +A   +  +       LTEL+L  NK+ 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205

Query: 583 GEIPRG 588
            ++   
Sbjct: 206 -KVDAA 210

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.6 bits (240), Expect = 6e-21
 Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
           N S+S  + Y +                   L     N+    +      + +   L L 
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLN 67

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTF 496
              L+ S+PD L    ++  L +  N    S+P    +L  L   D   NRL++ LP   
Sbjct: 68  RLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNRLST-LPELP 119

Query: 497 WNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLA 556
            +LK +   D+ +N L   L      L     IN   N  +  +P     L+ L   S+ 
Sbjct: 120 ASLKHL---DVDNNQLTM-LPELPALLEY---INADNNQLT-MLPELPTSLEVL---SVR 168

Query: 557 CNGLEGLIPESFGYLTELNLSFNKLEGEIPRG 588
            N L  L PE    L  L++S N LE  +P  
Sbjct: 169 NNQLTFL-PELPESLEALDVSTNLLE-SLPAV 198

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.2 bits (226), Expect = 4e-19
 Identities = 49/282 (17%), Positives = 100/282 (35%), Gaps = 51/282 (18%)

Query: 311 IDLSLPNVERLNLGLNRFSGTIPS----FITNASKLVYLDMGTNSFSGIIPNTIGLTGNP 366
           + + LP     +L  N F  TI      + +   K     +   +             N 
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENR------------NE 48

Query: 367 LDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGR 426
              +L   + N       + ++  N+  S+P  +     + +L++  N L  S+P     
Sbjct: 49  AVSLLKECLIN---QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPAS 101

Query: 427 LQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSN 486
           L+ L       N+L+ ++P+    L  L+   +  N+ +  +P     L  +   +  +N
Sbjct: 102 LEYL---DACDNRLS-TLPELPASLKHLD---VDNNQLT-MLPELPALLEYI---NADNN 150

Query: 487 RLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGD 546
           +LT  LP    +L+ +    + +N L   L     +L     +++S N     +P+    
Sbjct: 151 QLTM-LPELPTSLEVL---SVRNNQL-TFLPELPESLEA---LDVSTNLLE-SLPAVPVR 201

Query: 547 LKDLQN----ISLACNGLEGLIPESFGYLT---ELNLSFNKL 581
               +          N +  + PE+   L     + L  N L
Sbjct: 202 NHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 1e-18
 Identities = 80/474 (16%), Positives = 145/474 (30%), Gaps = 89/474 (18%)

Query: 113 TIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT----MHKLKFLDFSDNQLSGSLSSVTFN 168
           +I   + N  SL+  N  +N +S       F+      K      + N+    L     N
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 169 LSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGF 228
             S L   L+   LS  LP N+   +    VL + +N     +P   +  + L   +   
Sbjct: 60  QFSELQ--LNRLNLS-SLPDNLPPQI---TVLEITQNALI-SLPELPASLEYLDACDNRL 112

Query: 229 KKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIF 288
             L    P+  ++L  L    + NN+L   +P        LE +    N L  ++P    
Sbjct: 113 STL----PELPASLKHLD---VDNNQLT-MLPELPA---LLEYINADNNQLT-MLPE--- 157

Query: 289 NMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMG 348
                                       ++E L++  N+ +  +P    +   L  LD  
Sbjct: 158 -------------------------LPTSLEVLSVRNNQLT-FLPELPES---LEALD-- 186

Query: 349 TNSFSGIIPNTIGLTGNPLDGVLPTSIG---NLSMSLENIYISNCNIGGSIPQLISNLSN 405
                        ++ N L+  LP       +   +          I   IP+ I +L  
Sbjct: 187 -------------VSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231

Query: 406 LLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS 465
              + LE N L+  I  +  +       + P      S+ D   +             F 
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFP 289

Query: 466 GSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRV 525
            +  S +  +      +  +N  ++ L      L D +    +S      ++  +  L  
Sbjct: 290 ENKQSDVSQIWHAFEHEEHANTFSAFL----DRLSDTVSARNTS-GFREQVAAWLEKLSA 344

Query: 526 VIGINLSRNNFSGDIPSTIGD-----LKDLQNISLACNGLEGLIPESFGYLTEL 574
              +       + D   +  D       +L+   L     EGL     G L  L
Sbjct: 345 SAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.9 bits (215), Expect = 7e-18
 Identities = 55/380 (14%), Positives = 108/380 (28%), Gaps = 72/380 (18%)

Query: 103 LNISSLNL-QGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGS 161
             +   N  +     +   ++  + L L+   LS  +P ++    ++  L+ + N L   
Sbjct: 39  QALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-- 93

Query: 162 LSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRL 221
                                   LP    +    L+ L    N     +P   +  K L
Sbjct: 94  -----------------------SLPELPAS----LEYLDACDNRLS-TLPELPASLKHL 125

Query: 222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVG 281
            + N     L    P+  + L  +   +  NN+L   +P       +LE L +  N L  
Sbjct: 126 DVDNNQLTML----PELPALLEYI---NADNNQLT-MLPELPT---SLEVLSVRNNQL-T 173

Query: 282 VVPAAIFNMSTVKKIYLLDNSL--LGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA 339
            +P    ++   + + +  N L  L +  +    S           NR +  IP  I + 
Sbjct: 174 FLPELPESL---EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL 229

Query: 340 SKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQL 399
                +                L  NPL         +   +  + +     I  S+   
Sbjct: 230 DPTCTII---------------LEDNPLS-SRIRESLSQQTAQPDYH--GPRIYFSMSDG 271

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
             N  +  L D        +      ++          N  + +  D+L           
Sbjct: 272 QQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTSG 330

Query: 460 AGNKFSGSIPSCLGNLTSLR 479
              + + +    L     LR
Sbjct: 331 FREQVA-AWLEKLSASAELR 349

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 31/183 (16%), Positives = 70/183 (38%), Gaps = 23/183 (12%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG 160
             L+     L  T+P    +L     L++ +N+L+  +P        L++++  +NQL+ 
Sbjct: 103 EYLDACDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELP---ALLEYINADNNQLT- 153

Query: 161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
            L  +  +L     + + +++L+  LP    +    L+ L ++ N+    +P    +   
Sbjct: 154 MLPELPTSLEV---LSVRNNQLT-FLPELPES----LEALDVSTNLLE-SLPAVPVRNHH 204

Query: 221 LQ----LLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGF 276
            +           +++  IP+ I +L     I L +N L   I   +       +     
Sbjct: 205 SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 277 NNL 279
              
Sbjct: 264 IYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.4 bits (146), Expect = 2e-09
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 451 LARLNTLGLAGNKFSGSIP-------SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDIL 503
           L   N   L+ N F  +I        S          P    N   S+L      +    
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFS 62

Query: 504 FFDLSSNSLDGPLSLDIG-NLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEG 562
              L+  +L   L  ++   + V   + +++N     +P     L+ L       N L  
Sbjct: 63  ELQLNRLNLSS-LPDNLPPQITV---LEITQNALI-SLPELPASLEYL---DACDNRLST 114

Query: 563 LIPESFGYLTELNLSFNKLE 582
           L PE    L  L++  N+L 
Sbjct: 115 L-PELPASLKHLDVDNNQLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 467 SIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLS-LDIGNLRV 525
           SI   + N  SL S +   N ++      F          L   + +  +S L    +  
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 526 VIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLE 582
              + L+R N S  +P  +     +  + +  N L  L PE    L  L+   N+L 
Sbjct: 61  FSELQLNRLNLS-SLPDNLP--PQITVLEITQNALISL-PELPASLEYLDACDNRLS 113

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 57/332 (17%), Positives = 116/332 (34%), Gaps = 35/332 (10%)

Query: 194 LHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNN 253
                +  +           A   C R  +       L+ +IP  ++    ++ + L NN
Sbjct: 6   WMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNN 62

Query: 254 KLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDL 313
           ++      ++    NL+ LVL  N +  +   +  ++ +++ + L  N  L + S     
Sbjct: 63  RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFK 121

Query: 314 SLPNVERLNLGLNRFSGTIP--SFITNASKLVYLDMGTNSFSGIIPNTI--GLTGNPLDG 369
            L ++  LNL  N +  T+   S  ++ +KL  L +G       I      GLT      
Sbjct: 122 PLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT------ 174

Query: 370 VLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQK 429
                       LE + I   ++    P+ + ++ N+  L L   +    + +       
Sbjct: 175 -----------FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 430 LQGLYL--------PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSP 481
           ++ L L         F++L+    + L        + +        +   L  ++ L   
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 482 DLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           +   N+L SV    F  L  +    L +N  D
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.6 bits (212), Expect = 6e-18
 Identities = 50/279 (17%), Positives = 91/279 (32%), Gaps = 41/279 (14%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT-IGLTGNPLDGVLPTS 374
             V+ L+L  NR +    S +     L  L + +N  + I  ++   L            
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG----------- 100

Query: 375 IGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP--VTFGRLQKLQG 432
                 SLE++ +S   +          LS+L  L+L GN    ++     F  L KLQ 
Sbjct: 101 ------SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153

Query: 433 LYLPFNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
           L +        I  +    L  L  L +  +      P  L ++ ++    L   +   +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 492 LPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQ 551
           L         +   +L    LD                    +  S    +++      +
Sbjct: 214 LEIFVDVTSSVECLELRDTDLD----------------TFHFSELSTGETNSLIKKFTFR 257

Query: 552 NISLACNGLEGLIPESFG--YLTELNLSFNKLEGEIPRG 588
           N+ +    L  ++        L EL  S N+L+  +P G
Sbjct: 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 58/307 (18%), Positives = 109/307 (35%), Gaps = 57/307 (18%)

Query: 92  TCNVNSHRVTAL------NISSLNLQG----TIPP-QLGNLSSLTTLNLSHNKLSGDIPP 140
            C  +S  + ++       + SL+L       I    L    +L  L L+ N ++  I  
Sbjct: 35  ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEE 93

Query: 141 SIFT-MHKLKFLDFSDNQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLK 198
             F+ +  L+ LD S N LS +LSS  F  LSS+  + L  +        ++ ++L  L+
Sbjct: 94  DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 199 VLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE 258
           +L +       +I                         K+ + LT L ++ +  + L+  
Sbjct: 153 ILRVGNMDTFTKIQ-----------------------RKDFAGLTFLEELEIDASDLQ-S 188

Query: 259 IPHEI-GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL----LGSFSLGIDL 313
              +    + N+ +L+L     + ++   +   S+V+ + L D  L        S G   
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 314 SLPNV---ERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPN---------TIG 361
           SL        + +        +   +   S L+ L+   N    +             I 
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

Query: 362 LTGNPLD 368
           L  NP D
Sbjct: 308 LHTNPWD 314

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 44/184 (23%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK---VFHQNCAMALKSFEAECEVMKNIRH 730
             F  E  IG G F  VY+   L DG+ VA+K   +F    A A      E +++K + H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 731 RNHVKRISSCSNEDFKALDCLH---------STNCSLNIFDK----------LNIMIDVA 771
            N +K  +S     F   + L+           +  +  F K              + + 
Sbjct: 92  PNVIKYYAS-----FIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLC 146

Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIG 820
           SALE++   HS  V+H D+KP NVF          D G+GR  +   +     +LV T  
Sbjct: 147 SALEHM---HSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLVGTPY 201

Query: 821 YMAP 824
           YM+P
Sbjct: 202 YMSP 205

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 45/185 (24%), Positives = 68/185 (36%), Gaps = 34/185 (18%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKV--FHQNCAMALKSFEAECEVMKNIRHR 731
           E +     IG GS+G   K R   DG  +  K   +        +   +E  +++ ++H 
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 732 NHVKRISS---------------CSNED-FKALDCLHSTNCSLNIFDKLNIMIDVASALE 775
           N V+                   C   D    +         L+    L +M  +  AL+
Sbjct: 66  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 125

Query: 776 YLHFSHSTP--VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYM 822
             H        V+H DLKP NVF          DFG+ R+L  D S    +T V T  YM
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF--AKTFVGTPYYM 183

Query: 823 APGLL 827
           +P  +
Sbjct: 184 SPEQM 188

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 40/187 (21%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
           + +     +G G F  V     LHDG   A+K    +     +  + E ++ +   H N 
Sbjct: 29  KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNI 88

Query: 734 VKRISSCSNED------------------FKALDCLHSTNCSLNIFDKLNIMIDVASALE 775
           ++ ++ C  E                   +  ++ L      L     L +++ +   LE
Sbjct: 89  LRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLE 148

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL----TGDRSMIQTETLV---- 817
            +   H+    H DLKP N+           D G          G R  +  +       
Sbjct: 149 AI---HAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRC 205

Query: 818 TIGYMAP 824
           TI Y AP
Sbjct: 206 TISYRAP 212

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 66/295 (22%), Positives = 98/295 (33%), Gaps = 56/295 (18%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNP 366
           P+   L+L  N  S            L  L +  N  S I               ++ N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 367 LDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSI--PVTF 424
           L  + P    NL  SL  + I +  I      + S L N+  +++ GN L  S   P  F
Sbjct: 114 LVEIPP----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 425 GRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDL 483
             L KL  L +   KL   IP  L     LN L L  NK   +I    L   + L    L
Sbjct: 170 DGL-KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 484 GSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPST 543
           G N++  +   +   L  +    L +N L                           +P+ 
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-------------------------RVPAG 259

Query: 544 IGDLKDLQNISLACNGLEGLIPESFG---------YLTELNLSFNKLE-GEIPRG 588
           + DLK LQ + L  N +  +    F          Y   ++L  N +   E+   
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 65/321 (20%), Positives = 121/321 (37%), Gaps = 53/321 (16%)

Query: 104 NISSLNLQG----TIPP-QLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQ 157
           + + L+LQ      +       L  L  L L +NK+S  I    F+ + KL+ L  S N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 158 LSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKN-MFHGQIPLALS 216
           L   +       SS++++R+  +++  ++P  + + L  +  + +  N + +        
Sbjct: 114 LV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 217 KCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVL 274
              +L  L +   KL+  IPK++   L  L    L +NK++  I  E       L  L L
Sbjct: 170 DGLKLNYLRISEAKLT-GIPKDLPETLNELH---LDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPS 334
           G N +  +                      GS S      LP +  L+L  N+ S  +P+
Sbjct: 225 GHNQIRMIEN--------------------GSLS-----FLPTLRELHLDNNKLS-RVPA 258

Query: 335 FITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGG 394
            + +   L  + + TN+ + +  N     G  +       I     SL N  +    +  
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI-----SLFNNPVPYWEVQ- 312

Query: 395 SIPQLISNLSNLLLLDLEGNK 415
             P     +++ L +     K
Sbjct: 313 --PATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 13/217 (5%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
            +S     + + N +I          L +L  L L  NK++      F  L+KLQ LY+ 
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVL--PS 494
            N L   IP  L   + L  L +  N+           L ++   ++G N L +    P 
Sbjct: 111 KNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 495 TFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNIS 554
            F  LK + +  +S   L     +       +  ++L  N         +     L  + 
Sbjct: 168 AFDGLK-LNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 555 LACNGLEGLIPESF---GYLTELNLSFNKLEGEIPRG 588
           L  N +  +   S      L EL+L  NKL   +P G
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 8/185 (4%)

Query: 405 NLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKF 464
           +L ++      L  ++P           L L  N ++    D    L  L  L L  NK 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 465 SGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLR 524
           S         L  L+   +  N L  + P+   +L ++    +  N +          LR
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLR 147

Query: 525 VVIGINLSRNNF-SGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEG 583
            +  I +  N   +        D   L  + ++   L G+  +    L EL+L  NK++ 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ- 206

Query: 584 EIPRG 588
            I   
Sbjct: 207 AIELE 211

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-------MHKLKFLDFSD 155
           L++ +  L   +P  L +L  L  + L  N ++  +  + F              +   +
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 156 NQLS-GSLSSVTF-NLSSVLDIRLDSDK 181
           N +    +   TF  ++  L I+  + K
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 45/217 (20%), Positives = 70/217 (32%), Gaps = 31/217 (14%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
            +  + + I++    I            NL +L L  N L       F  L  L+ L L 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 437 FNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPS 494
            N    S+       L RL+TL L        +       L +L+   L  N L ++   
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 495 TFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNIS 554
           TF +L ++    L  N +                 ++    F G        L  L  + 
Sbjct: 148 TFRDLGNLTHLFLHGNRIS----------------SVPERAFRG--------LHSLDRLL 183

Query: 555 LACNGLEGLIPESFGYLT---ELNLSFNKLEGEIPRG 588
           L  N +  + P +F  L     L L  N L   +P  
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 219

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 17/211 (8%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT---------IGLTGNP 366
              +R+ L  NR S    +       L  L + +N  + I             + L+ N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 367 LDGVLPTSI-GNLSMSLENIYISNCNIGGSIPQ-LISNLSNLLLLDLEGNKLTGSIPV-T 423
               +  +    L   L  +++  C +   +   L   L+ L  L L+ N L  ++P  T
Sbjct: 92  QLRSVDPATFHGLG-RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 424 FGRLQKLQGLYLPFNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPD 482
           F  L  L  L+L  N+++ S+P++    L  L+ L L  N+ +   P    +L  L +  
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 483 LGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           L +N L+++       L+ + +  L+ N   
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 53/207 (25%), Positives = 79/207 (38%), Gaps = 9/207 (4%)

Query: 104 NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQ 157
               + L G     +P        +LT L L  N L+  I  + FT +  L+ LD SDN 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 158 LSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALS 216
              S+   TF  L  +  + LD   L  EL   +   L  L+ L+L  N           
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 217 KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGF 276
               L  L L   ++S    +    L  L ++ L  N++    PH    L  L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 277 NNLVGVVPAAIFNMSTVKKIYLLDNSL 303
           NNL  +   A+  +  ++ + L DN  
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 45/186 (24%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 104 NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQ 157
           N++ L L       I       L+ L  L+LS N     + P+ F  + +L  L      
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 158 LSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALS 216
           L   L    F  L+++  + L  + L   LP +    L  L  LFL  N        A  
Sbjct: 117 LQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 217 KCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVL 274
               L  L L   +++  +      +L  L  + L  N L   +P E    L  L+ L L
Sbjct: 175 GLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRL 232

Query: 275 GFNNLV 280
             N  V
Sbjct: 233 NDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 12/238 (5%)

Query: 93  CNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFL 151
           C   +      +     LQ  +P  +   ++   + L  N++S  +P + F     L  L
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTIL 61

Query: 152 DFSDNQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQ 210
               N L+  + +  F  L+ +  + L  +     +     + L  L  L L +      
Sbjct: 62  WLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 211 IPLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEI-GYLPN 268
            P        LQ L L    L  A+P +   +L  L  + L  N++   +P      L +
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHS 178

Query: 269 LENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLN 326
           L+ L+L  N +  V P A  ++  +  +YL  N+ L +        L  ++ L L  N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 36/178 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKV--FHQNCAMALKSFEAECEVMKNIRHRN 732
             +S    IG G    V++         AIK     +     L S+  E   +  ++  +
Sbjct: 28  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 87

Query: 733 H--VKRISSCSNED--FKALDCLHSTNCSLNIFDKL------------NIMIDVASALEY 776
              ++       +   +  ++C    N  L     L            +   ++  A+  
Sbjct: 88  DKIIRLYDYEITDQYIYMVMEC---GNIDL--NSWLKKKKSIDPWERKSYWKNMLEAVHT 142

Query: 777 LHFSHSTPVIHCDLKPKNVF---------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           +H      ++H DLKP N           DFGI   +  D + +  ++ V T+ YM P
Sbjct: 143 IHQHG---IVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 197

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 43/201 (21%), Positives = 70/201 (34%), Gaps = 51/201 (25%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK-VFHQNCAMALKSFEAECEVMKNIR 729
           R    F     +G G FG V++ +   D    AIK +   N  +A +    E + +  + 
Sbjct: 2   RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE 61

Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNI----------FDKLN-------------- 765
           H   V+  ++   ++        S    L I           D +N              
Sbjct: 62  HPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCL 121

Query: 766 -IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE 814
            I + +A A+E+LH   S  ++H DLKP N+F          DFG+   +  D       
Sbjct: 122 HIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL 178

Query: 815 TLVTIG-----------YMAP 824
           T +              YM+P
Sbjct: 179 TPMPAYARHTGQVGTKLYMSP 199

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 87.8 bits (218), Expect = 8e-19
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 26/173 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKV--FHQNCAMALKSFEAECEVMKNIRHRN 732
             +S    IG G    V++         AIK     +     L S+  E   +  ++  +
Sbjct: 9   RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68

Query: 733 H--VKRISSCSNED--FKALDC----LHS---TNCSLNIFDKLNIMIDVASALEYLHFSH 781
              ++       +   +  ++C    L+S      S++ +++ +   ++  A+  +H  H
Sbjct: 69  DKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIH-QH 127

Query: 782 STPVIHCDLKPKNVF---------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              ++H DLKP N           DFGI   +  D + +  ++ V T+ YM P
Sbjct: 128 G--IVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 178

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 43/171 (25%), Positives = 66/171 (38%), Gaps = 25/171 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
            + +    IG G FG V+ G   +  +VAIK   +  AM+ + F  E EVM  + H   V
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLV 66

Query: 735 KRISSCSNED-------FKA----LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +    C  +        F       D L +          L + +DV   + YL  +   
Sbjct: 67  QLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC-- 124

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            VIH DL  +N            DFG+ R +  D+    T T   + + +P
Sbjct: 125 -VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 174

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+    +   +VA+K      +M++++F AE  VMK ++H   V
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLV 246

Query: 735 KRISSCSNEDF----------KALDCLHST-NCSLNIFDKLNIMIDVASALEYLHFSHST 783
           K  +  + E              LD L S       +   ++    +A  + ++   +  
Sbjct: 247 KLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN-- 304

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             IH DL+  N+           DFG+ R++  +    +      I + AP
Sbjct: 305 -YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 354

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 25/171 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E+ +    +G G FG V  G+     +VA+K+  +  +M+   F  E + M  + H   V
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG-SMSEDEFFQEAQTMMKLSHPKLV 66

Query: 735 KRISSCSNED-------FKA----LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           K    CS E        + +    L+ L S    L     L +  DV   + +L      
Sbjct: 67  KFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQ-- 124

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             IH DL  +N            DFG+ R +  D+ +    T   + + AP
Sbjct: 125 -FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAP 174

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 87.2 bits (216), Expect = 2e-18
 Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKV--FHQNCAMALKSFEAECEVMKNIRHRN 732
             +S    IG G    V++         AIK     +     L S+  E   +  ++  +
Sbjct: 56  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 115

Query: 733 H--VKRISSCSNED--FKALDC----LHS---TNCSLNIFDKLNIMIDVASALEYLHFSH 781
              ++       +   +  ++C    L+S      S++ +++ +   ++  A+  +H   
Sbjct: 116 DKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG 175

Query: 782 STPVIHCDLKPKNVF---------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              ++H DLKP N           DFGI   +  D + +  ++ V  + YM P
Sbjct: 176 ---IVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPP 225

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 25/171 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E       +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLV 71

Query: 735 KRISSCSNEDF----------KALDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHST 783
           +  +  + E              +D L + +   L I   L++   +A  + ++   +  
Sbjct: 72  RLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN-- 129

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             IH DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 130 -YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 179

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 85.9 bits (213), Expect = 3e-18
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 41/184 (22%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKV--FHQNCAMALKSFEAECEVMKNIRHR 731
           EK+ +   IG GSFG     +   DG +  IK     +  +   +    E  V+ N++H 
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 732 NHVKRISSCSNEDFKALDCLH-----STNCSLNIFDK------------LNIMIDVASAL 774
           N V+   S     F+    L+          L                 L+  + +  AL
Sbjct: 84  NIVQYRES-----FEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLAL 138

Query: 775 EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMA 823
           +++H      ++H D+K +N+F          DFGI R+L     +      + T  Y++
Sbjct: 139 KHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVEL--ARACIGTPYYLS 193

Query: 824 PGLL 827
           P + 
Sbjct: 194 PEIC 197

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 242

Query: 735 KRISSCSNEDF----------KALDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHST 783
           +  +  S E              LD L       L +   +++   +AS + Y+   +  
Sbjct: 243 QLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN-- 300

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             +H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 301 -YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 350

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 325

Query: 735 KRISSCSNEDF----------KALDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHST 783
           +  +  S E              LD L       L +   +++   +AS + Y+   +  
Sbjct: 326 QLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN-- 383

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             +H DL+  N+           DFG+ RL+  +    +      I + AP
Sbjct: 384 -YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 433

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 83.4 bits (207), Expect = 9e-18
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 25/171 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           +  +    +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V
Sbjct: 24  KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLV 82

Query: 735 KRISSCSNED-------FKA----LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +    C+ +        + A    L+ L            L +  DV  A+EYL      
Sbjct: 83  QLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ-- 140

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             +H DL  +N            DFG+ R +  D       +   + +  P
Sbjct: 141 -FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 190

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 46/205 (22%), Positives = 72/205 (35%), Gaps = 44/205 (21%)

Query: 653 SIRGGKSKTLRRFSYQDLFRAT---EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH 708
           S RG  S+TL+   Y      +   + F + + +G GS+G V+K R   DG   A+K   
Sbjct: 32  SFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSM 91

Query: 709 QNCAMALKSFEAECEV---MKNIRHRNHVKRISSCSNEDFKALDCLHSTN--CSLNIFDK 763
                         EV    K  +H   V+   +     ++    L+     C  ++   
Sbjct: 92  SPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQA-----WEEGGILYLQTELCGPSLQQH 146

Query: 764 L-------------NIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI 800
                           + D   AL +LH      ++H D+KP N+F          DFG+
Sbjct: 147 CEAWGASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGL 203

Query: 801 GRLLTGDRSMIQTETLV-TIGYMAP 824
              L    +    E       YMAP
Sbjct: 204 LVELG---TAGAGEVQEGDPRYMAP 225

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 31/172 (18%)

Query: 679 KENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRI 737
              ++G G++G VY GR L + + +AIK   +  +   +    E  + K+++H+N V+ +
Sbjct: 26  DRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYL 85

Query: 738 SSCSNEDF-----------KALDCLHSTNCSLNIFDKL--NIMIDVASALEYLHFSHSTP 784
            S S   F                L S    L   ++        +   L+YLH +    
Sbjct: 86  GSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ--- 142

Query: 785 VIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           ++H D+K  NV            DFG  + L G      TET   T+ YMAP
Sbjct: 143 IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC--TETFTGTLQYMAP 192

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 45/193 (23%), Positives = 67/193 (34%), Gaps = 50/193 (25%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRH 730
           R    F +  LIG G FG V+K +   DG    IK    N   A +    E + +  + H
Sbjct: 8   RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLDH 63

Query: 731 RNHVKRISS----CSNEDFKALDCLHSTNCSLNI---------------------FDK-- 763
            N V           + +  + +   S    L I                      DK  
Sbjct: 64  VNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVL 123

Query: 764 -LNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ 812
            L +   +   ++Y+   HS  +I+ DLKP N+F          DFG+   L  D     
Sbjct: 124 ALELFEQITKGVDYI---HSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKR-- 178

Query: 813 TETLV-TIGYMAP 824
                 T+ YM+P
Sbjct: 179 -TRSKGTLRYMSP 190

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 51/189 (26%)

Query: 674 TEKFSKEN-LIGVGSFGSVYKGR-LHDGIEVAIKVF--HQNCAMALKSFEAECEVMKNIR 729
             +F K +  IG GSF +VYKG      +EVA       +      + F+ E E++K ++
Sbjct: 24  DGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQ 83

Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNIF----------DKL------------NIM 767
           H N V+   S  +               + +             L            +  
Sbjct: 84  HPNIVRFYDSWESTV--------KGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWC 135

Query: 768 IDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETL 816
             +   L++LH + + P+IH DLK  N+F           D G+  L          + +
Sbjct: 136 RQILKGLQFLH-TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS----FAKAV 190

Query: 817 V-TIGYMAP 824
           + T  +MAP
Sbjct: 191 IGTPEFMAP 199

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 27/173 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
              + ++ +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N 
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNL 278

Query: 734 VKRISSCSNED-------FKALDCLHS-----TNCSLNIFDKLNIMIDVASALEYLHFSH 781
           V+ +  C+ E        F     L           ++    L +   ++SA+EYL   +
Sbjct: 279 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN 338

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               IH +L  +N            DFG+ RL+TGD           I + AP
Sbjct: 339 ---FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 388

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 35/180 (19%), Positives = 75/180 (41%), Gaps = 34/180 (18%)

Query: 676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHV 734
            F  ++++G G+ G++    + D  +VA+K     C       + E ++++    H N +
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC---FSFADREVQLLRESDEHPNVI 81

Query: 735 KRISSCSNEDFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
           +   +  +  F+ +          + +   + +    + + ++    S L +L   HS  
Sbjct: 82  RYFCTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHL---HSLN 138

Query: 785 VIHCDLKPKNVF---------------DFGIGRLLTGDR-SMIQTETLV-TIGYMAPGLL 827
           ++H DLKP N+                DFG+ + L   R S  +   +  T G++AP +L
Sbjct: 139 IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEML 198

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 52/201 (25%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRH 730
           R    F +  ++G G+FG V K R   D    AIK         L +  +E  ++ ++ H
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNH 61

Query: 731 RNHVKRISS-CSNEDFKALDCLHSTNCSLNI----------FDKL-------------NI 766
           +  V+  ++     +F           +L I          +D +              +
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRL 121

Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
              +  AL Y+H      +IH DLKP N+F          DFG+ + +     +++ ++ 
Sbjct: 122 FRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQ 178

Query: 817 VTIG-------------YMAP 824
              G             Y+A 
Sbjct: 179 NLPGSSDNLTSAIGTAMYVAT 199

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 27/173 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG-IEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
              + ++ +G G +G VY+G      + VA+K   ++  M ++ F  E  VMK I+H N 
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNL 71

Query: 734 VKRISSCSNED-------FKALDCLHS-----TNCSLNIFDKLNIMIDVASALEYLHFSH 781
           V+ +  C+ E        F     L           ++    L +   ++SA+EYL   +
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN 131

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               IH DL  +N            DFG+ RL+TGD           I + AP
Sbjct: 132 ---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 52/285 (18%), Positives = 92/285 (32%), Gaps = 32/285 (11%)

Query: 268 NLENLVLGFNNLVGVVPAA-IFNMSTVKKIYLLDNSLLGSFSLGI--DLSLPNVERLNLG 324
           +LE L+   +    +     I    ++K++ +    +      G    L +  ++ L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 325 LNRFSGTIPSFITNAS--KLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSL 382
               +GT P  +  A+   L  L++   S++              D  L      L   L
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWAT------------RDAWLAELQQWLKPGL 151

Query: 383 ENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVT----FGRLQKLQGLYLPFN 438
           + + I+  +      + +     L  LDL  N   G   +       +   LQ L L   
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 439 KLA---GSIPDQLCHLARLNTLGLAGNKFSGSIP-SCLGNLTSLRSPDLGSNRLTSVLPS 494
            +    G          +L  L L+ N    +         + L S +L    L  V   
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271

Query: 495 TFWNLKDILFFDLSSNSLDG-PLSLDIGNLRVVIGINLSRNNFSG 538
               L  +   DLS N LD  P   ++  +     ++L  N F  
Sbjct: 272 LPAKLSVL---DLSYNRLDRNPSPDELPQVGN---LSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 5e-16
 Identities = 51/333 (15%), Positives = 91/333 (27%), Gaps = 60/333 (18%)

Query: 185 ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTI 244
           EL     +  + LK +    ++      +     KRL +               +  ++ 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 245 LRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLL 304
           L++++L N ++ G  P  +      +  +L   N+                      +  
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-------------------ATRD 137

Query: 305 GSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTG 364
              +       P ++ L++            +     L  LD+  N   G       L  
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-- 195

Query: 365 NPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTF 424
                                           P     L  L L +      +G      
Sbjct: 196 -------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 425 GRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGLAGNKFSGSIPSCLG-NLTSLRSPD 482
               +LQGL L  N L  +     C   ++LN+L L+       +P  L   L+ L   D
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVL---D 280

Query: 483 LGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGP 515
           L  NRL      +   L  +    L  N     
Sbjct: 281 LSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.1 bits (187), Expect = 4e-15
 Identities = 56/290 (19%), Positives = 95/290 (32%), Gaps = 25/290 (8%)

Query: 58  QALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQ 117
             L A    +     +L       +T   +    T  + S  +  L + +  +   I   
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 118 ---LGNLSSLTTLNLSHNKLSGDIPPSIF--TMHKLKFLDFSDNQLSGSLSSVTFNLSSV 172
              +  +S L  L L + +++G  PP +   T   L  L+  +   +   + +   L   
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA-ELQQW 146

Query: 173 LDIRLDSDKLSG----ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC-------KRL 221
           L   L    ++                 L  L L+ N   G+  L  + C       + L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFNNLV 280
            L N G +  SG      +    L+ + L +N LR         +   L +L L F  L 
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 281 GVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSG 330
             VP  +   + +  + L  N L           LP V  L+L  N F  
Sbjct: 267 Q-VPKGLP--AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 8e-15
 Identities = 43/222 (19%), Positives = 80/222 (36%), Gaps = 17/222 (7%)

Query: 379 SMSLENIYISNCNIGGSIPQLIS---NLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL 435
           S+SL+ + +    I   I         +S L  L LE  ++TG+ P             L
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 436 PFNKLAGSIPD------QLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLT 489
               ++ +  D      Q      L  L +A           +    +L + DL  N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 490 -------SVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPS 542
                  ++ P  F  L+ +   +    +  G  S        + G++LS N+      +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 543 TIGD-LKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEG 583
              D    L +++L+  GL+ +       L+ L+LS+N+L+ 
Sbjct: 247 PSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 44/303 (14%), Positives = 72/303 (23%), Gaps = 57/303 (18%)

Query: 297 YLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPS---FITNASKLVYLDMGTNSFS 353
               ++          +   +++RL +   R    I      +   S L  L +     +
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 354 GIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLL----- 408
           G  P  +     P               L  + + N +        ++ L   L      
Sbjct: 109 GTAPPPLLEATGP--------------DLNILNLRNVSWAT-RDAWLAELQQWLKPGLKV 153

Query: 409 LDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSI-------PDQLCHLARLNTLGLAG 461
           L +                  L  L L  N   G         P +   L  L       
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP-STFWNLKDILFFDLSSNSLDGPLSLDI 520
              SG   +       L+  DL  N L       +      +   +LS   L        
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273

Query: 521 GNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNK 580
             L V   ++LS N      PS                      P+    +  L+L  N 
Sbjct: 274 AKLSV---LDLSYNRLDR-NPS----------------------PDELPQVGNLSLKGNP 307

Query: 581 LEG 583
              
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 49/331 (14%), Positives = 96/331 (29%), Gaps = 62/331 (18%)

Query: 117 QLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSL---SSVTFNLSSVL 173
             G  S    L     +        I     LK L     ++   +   +     +S + 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 174 DIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSG 233
           ++ L++ +++G  P  +                    +         L L N+ +     
Sbjct: 99  ELTLENLEVTGTAPPPL--------------------LEATGPDLNILNLRNVSWATRDA 138

Query: 234 AIPKEISNL-TILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMST 292
            + +    L   L+ +S+           ++   P L  L L  N  +G           
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG----------- 187

Query: 293 VKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSF 352
                  +  L+ +       +L  +   N G+   SG   +      +L  LD+  NS 
Sbjct: 188 -------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 353 SGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLE 412
                                        L ++ +S   +   +P+ +   + L +LDL 
Sbjct: 241 RDAAGAPSCD---------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLS 282

Query: 413 GNKLTGSIPVTFGRLQKLQGLYLPFNKLAGS 443
            N+L    P     L ++  L L  N    S
Sbjct: 283 YNRLD-RNPS-PDELPQVGNLSLKGNPFLDS 311

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 35/174 (20%)

Query: 680 ENLIGVGSFGSVYKGRLHDG---IEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVK 735
           +  +G G+FGSV +G        I+VAIKV  Q       +    E ++M  + +   V+
Sbjct: 15  DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 74

Query: 736 RISSCSNEDFKA----------LDCLHSTNCSLNIFDKLNIMIDVASALEYL---HFSHS 782
            I  C  E                 L      + + +   ++  V+  ++YL   +F   
Sbjct: 75  LIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF--- 131

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET--LVTIGYMAP 824
              +H DL  +NV           DFG+ + L  D S     +     + + AP
Sbjct: 132 ---VHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAP 182

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 33/180 (18%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH-----DGIEVAIKVFHQNCAMALKSFEAECEVMKNIR 729
                 + +G G+FGSV   R        G  VA+K    +     + F+ E +++K + 
Sbjct: 23  RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALH 82

Query: 730 HRNHVKRISSCSNEDFKA-------------LDCLHSTNCSLNIFDKLNIMIDVASALEY 776
               VK          ++              D L      L+    L     +   +EY
Sbjct: 83  SDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEY 142

Query: 777 LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS--MIQTETLVTIGYMAP 824
           L        +H DL  +N+           DFG+ +LL  D+   +++      I + AP
Sbjct: 143 LGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAP 199

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 46/217 (21%)

Query: 652 KSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQN 710
            S+ G   +    F  Q +     +     ++  G F  VY+ + +  G E A+K    N
Sbjct: 5   GSLGGASGRDQSDFVGQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN 64

Query: 711 CAMALKSFEAECEVMKNIR-HRNHVKRISS---------------------CSNEDFKAL 748
                ++   E   MK +  H N V+  S+                     C  +  + L
Sbjct: 65  EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFL 124

Query: 749 DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF 798
             + S    L+    L I      A++++H     P+IH DLK +N+           DF
Sbjct: 125 KKMESRG-PLSCDTVLKIFYQTCRAVQHMH-RQKPPIIHRDLKVENLLLSNQGTIKLCDF 182

Query: 799 GIGRLLTGDRSMIQTETLV-----------TIGYMAP 824
           G    ++       +               T  Y  P
Sbjct: 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTP 219

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 36/180 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG-----IEVAIKVFHQNC-AMALKSFEAECEVMKNI 728
            +  K  ++G G FG+V+KG          I V IKV        + ++       + ++
Sbjct: 13  TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL 72

Query: 729 RHRNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYL- 777
            H + V+ +  C                 LD +     +L     LN  + +A  + YL 
Sbjct: 73  DHAHIVRLLGLCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE 132

Query: 778 --HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYMAP 824
                     +H +L  +NV           DFG+  LL  D   +        I +MA 
Sbjct: 133 EHGM------VHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMAL 186

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 78.8 bits (195), Expect = 7e-16
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 36/180 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG-----IEVAIKVFHQNC-AMALKSFEAECEVMKNI 728
            +F K  ++G G+FG+VYKG          I VAIK   +     A K    E  VM ++
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74

Query: 729 RHRNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYL- 777
            + +  + +  C                 LD +     ++     LN  + +A  + YL 
Sbjct: 75  DNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE 134

Query: 778 --HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYMAP 824
                     +H DL  +NV           DFG+ +LL  +      E   V I +MA 
Sbjct: 135 DRRL------VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 188

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 79.2 bits (196), Expect = 8e-16
 Identities = 41/156 (26%), Positives = 58/156 (37%), Gaps = 26/156 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRN 732
           E       IG G+FG V+ GRL  D   VA+K   +         F  E  ++K   H N
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173

Query: 733 HVKRISSCSNED-------FKA----LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            V+ I  C+ +               L  L +    L +   L ++ D A+ +EYL    
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYL---E 230

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGD 807
           S   IH DL  +N            DFG+ R     
Sbjct: 231 SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADG 266

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 46/173 (26%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD--------GIEVAIKVFHQNCAMALKSFEAECEVMK 726
           E       +G G+F  ++KG   +          EV +KV  +      +SF     +M 
Sbjct: 8   EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMS 67

Query: 727 NIRHRNHVKRISSCSNED-------FKA----LDCLHSTNCSLNIFDKLNIMIDVASALE 775
            + H++ V     C   D       F         L      +NI  KL +   +A+A+ 
Sbjct: 68  KLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMH 127

Query: 776 YL---HFSHSTPVIHCDLKPKNVF------------------DFGIGRLLTGD 807
           +L           IH ++  KN+                   D GI   +   
Sbjct: 128 FLEENTL------IHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPK 174

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 34/181 (18%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH-----DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI 728
               +   +G G FG V   R        G +VA+K          +   + E E+++N+
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL 80

Query: 729 RHRNHVKRISSCSNEDFKA-------------LDCLHSTNCSLNIFDKLNIMIDVASALE 775
            H N VK    C+ +                  + L      +N+  +L   + +   ++
Sbjct: 81  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMD 140

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS--MIQTETLVTIGYMA 823
           YL        +H DL  +NV           DFG+ + +  D+    ++ +    + + A
Sbjct: 141 YLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYA 197

Query: 824 P 824
           P
Sbjct: 198 P 198

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 44/181 (24%)

Query: 665 FSYQDLFRATEKFSKE---------NLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNC 711
            +Y++  RA   F++E          +IG G  G V  GRL       + VAIK      
Sbjct: 30  HTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY 89

Query: 712 -AMALKSFEAECEVMKNIRHRNHVKRISSCSNED-------FKALDCLHS----TNCSLN 759
                + F +E  +M    H N ++     +          +     L +     +    
Sbjct: 90  TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFT 149

Query: 760 IFDKLNIMIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG 806
           I   + ++  V + + YL    +      +H DL  +NV           DFG+ R+L  
Sbjct: 150 IMQLVGMLRGVGAGMRYLSDLGY------VHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203

Query: 807 D 807
           D
Sbjct: 204 D 204

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 49/176 (27%)

Query: 682 LIGVGSFGSVYKG---RLHDGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHRNHVKRI 737
            I  G  G +Y      + +G  V +K       A A     AE + +  + H + V+  
Sbjct: 87  CIAHGGLGWIYLALDRNV-NGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIF 145

Query: 738 SSCSNEDFKALDCLHSTNCS-------------------LNIFDKLNIMIDVASALEYLH 778
                 +F      H                        L + + +  ++++  AL YLH
Sbjct: 146 ------NFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLH 199

Query: 779 FSHSTPVIHCDLKPKNVF---------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              S  +++ DLKP+N+          D G    +           L  T G+ AP
Sbjct: 200 ---SIGLVYNDLKPENIMLTEEQLKLIDLGAVSRIN------SFGYLYGTPGFQAP 246

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 33/180 (18%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH-----DGIEVAIKVFHQNCAMALKSFEAECEVMKNIR 729
                   +G G+FGSV   R        G  VA+K    +    L+ FE E E++K+++
Sbjct: 10  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ 69

Query: 730 HRNHVKRISSCSNEDFKA-------------LDCLHSTNCSLNIFDKLNIMIDVASALEY 776
           H N VK    C +   +               D L      ++    L     +   +EY
Sbjct: 70  HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEY 129

Query: 777 LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS--MIQTETLVTIGYMAP 824
           L        IH DL  +N+           DFG+ ++L  D+    ++      I + AP
Sbjct: 130 LGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAP 186

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 79.6 bits (196), Expect = 1e-15
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 35/174 (20%)

Query: 680 ENLIGVGSFGSVYKGRLHDG---IEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVK 735
           +  +G G+FGSV +G        I+VAIKV  Q       +    E ++M  + +   V+
Sbjct: 341 DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 400

Query: 736 RISSCSNEDFK----------ALDCLHSTNCSLNIFDKLNIMIDVASALEYL---HFSHS 782
            I  C  E                 L      + + +   ++  V+  ++YL   +F   
Sbjct: 401 LIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF--- 457

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET--LVTIGYMAP 824
              +H +L  +NV           DFG+ + L  D S     +     + + AP
Sbjct: 458 ---VHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAP 508

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 77.5 bits (191), Expect = 2e-15
 Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 40/183 (21%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHRN 732
             +   +++G G+  +V++GR    G   AIKVF+  +    +     E EV+K + H+N
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 733 HVKRISS---------------CSN-EDFKALDCLHSTNCSLNIFDKLNIMIDVASALEY 776
            VK  +                C     +  L+   S    L   + L ++ DV   + +
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGGMNH 127

Query: 777 LHFSHSTPVIHCDLKPKNVF--------------DFGIGRLLTGDRSMIQTETLV-TIGY 821
           L   +   ++H ++KP N+               DFG  R L  D       +L  T  Y
Sbjct: 128 LR-ENG--IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF---VSLYGTEEY 181

Query: 822 MAP 824
           + P
Sbjct: 182 LHP 184

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 48/198 (24%)

Query: 669 DLFRATEKFSKE---------NLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNC-AMA 714
           +L +A +               +IG G FG VY G L D     I  A+K  ++      
Sbjct: 10  ELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE 69

Query: 715 LKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA------------LDCLHSTNCSLNIFD 762
           +  F  E  +MK+  H N +  +  C   +                + + +   +  + D
Sbjct: 70  VSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKD 129

Query: 763 KLNIMIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD-- 807
            +   + VA  ++YL    F      +H DL  +N            DFG+ R +     
Sbjct: 130 LIGFGLQVAKGMKYLASKKF------VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEY 183

Query: 808 -RSMIQTETLVTIGYMAP 824
                +T   + + +MA 
Sbjct: 184 YSVHNKTGAKLPVKWMAL 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 48/237 (20%), Positives = 85/237 (35%), Gaps = 24/237 (10%)

Query: 84  SVCNWIGITCNVNSHRVTAL------NISSLNLQG----TIPP-QLGNLSSLTTLNLSHN 132
            V     IT          +      +  +L+L       +      +   L  L+LS  
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 133 KLSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNI 190
           ++   I    +  +  L  L  + N +  SL+   F  LSS+  +      L+  L    
Sbjct: 63  EIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFP 119

Query: 191 CNYLHYLKVLFLAKNMFHG-QIPLALSKCKRLQLLNLGFKKLSGAIPKEI----SNLTIL 245
             +L  LK L +A N+    ++P   S    L+ L+L   K+  +I          + +L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178

Query: 246 R-KISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDN 301
              + L  N +   I         L+ L L  N L  V       +++++KI+L  N
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 28/210 (13%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLC-HLAR 453
            IP  +    +   LDL  N L      +F    +LQ L L   ++  +I D     L+ 
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 454 LNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
           L+TL L GN    S+       L+SL+        L S+      +LK +   +++ N +
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 513 -----DGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQN-------ISLACNGL 560
                    S ++ NL     ++LS N     I     DL+ L         + L+ N +
Sbjct: 137 QSFKLPEYFS-NLTNLEH---LDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSLDLSLNPM 189

Query: 561 EGLIPESFGY--LTELNLSFNKLEGEIPRG 588
             + P +F    L EL L  N+L+  +P G
Sbjct: 190 NFIQPGAFKEIRLKELALDTNQLK-SVPDG 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 22/215 (10%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIP---------NTIGLTGNP 366
            + + L+L  N           +  +L  LD+       I           +T+ LTGNP
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 367 LDGVLPTSIGNLSMSLENIYISNCNIGGSIP-QLISNLSNLLLLDLEGNKLTGSIPV--T 423
           +  +   +   LS SL+ +     N+  S+    I +L  L  L++  N +  S  +   
Sbjct: 88  IQSLALGAFSGLS-SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEY 144

Query: 424 FGRLQKLQGLYLPFNKLAGSIP----DQLCHLARLN-TLGLAGNKFSGSIPSCLGNLTSL 478
           F  L  L+ L L  NK+  SI       L  +  LN +L L+ N  +  I         L
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 479 RSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           +   L +N+L SV    F  L  +    L +N  D
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 21/222 (9%)

Query: 197 LKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKL 255
            K L L+ N        +      LQ+L+L   ++   I      +L+ L  + L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 256 RGEIPHEI-GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLS 314
           +  +       L +L+ LV    NL  +    I ++ T+K++ +  N +          +
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 315 LPNVERLNLGLNRFSGTIPSFI-TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPT 373
           L N+E L+L  N+   +I         ++  L++           ++ L+ NP++ + P 
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL-----------SLDLSLNPMNFIQPG 195

Query: 374 SIGNLSMSLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGN 414
           +   +   L+ + +    +  S+P  I   L++L  + L  N
Sbjct: 196 AFKEI--RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 38/180 (21%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNCAMALKS-FEAECEVMKNIR 729
           E      ++G G FG VY+G   +     I VA+K   ++C +  K  F +E  +MKN+ 
Sbjct: 12  EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLD 71

Query: 730 HRNHVKRISSCSNE------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYL 777
           H + VK I     E            +      L     SL +   +   + +  A+ YL
Sbjct: 72  HPHIVKLIGIIEEEPTWIIMELYPYGEL--GHYLERNKNSLKVLTLVLYSLQICKAMAYL 129

Query: 778 ---HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
              +       +H D+  +N+           DFG+ R +  +     + T + I +M+P
Sbjct: 130 ESINC------VHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSP 183

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 34/178 (19%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNCAMALKS-FEAECEVMKNIR 729
           E+      IG G FG V++G         + VAIK      + +++  F  E   M+   
Sbjct: 15  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 74

Query: 730 HRNHVKRISSCSNE------DFKALDCLHS---TNC-SLNIFDKLNIMIDVASALEYL-- 777
           H + VK I   +        +   L  L S       SL++   +     +++AL YL  
Sbjct: 75  HPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLES 134

Query: 778 -HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             F      +H D+  +NV           DFG+ R +        ++  + I +MAP
Sbjct: 135 KRF------VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAP 186

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 39/186 (20%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNC-AMALKSFEAECEVMK 726
                   + +IG G FG VY G   D     I+ AIK   +      +++F  E  +M+
Sbjct: 18  HERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMR 77

Query: 727 NIRHRNHVKRISSCSNEDFKA------------LDCLHSTNCSLNIFDKLNIMIDVASAL 774
            + H N +  I      +               L  + S   +  + D ++  + VA  +
Sbjct: 78  GLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGM 137

Query: 775 EYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD---RSMIQTETLVT 818
           EYL    F      +H DL  +N            DFG+ R +               + 
Sbjct: 138 EYLAEQKF------VHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLP 191

Query: 819 IGYMAP 824
           + + A 
Sbjct: 192 VKWTAL 197

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 33/180 (18%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH-----DGIEVAIKVFHQNCAMALKSFEAECEVMKNIR 729
                   +G G+FGSV   R        G  VA+K    +    L+ FE E E++K+++
Sbjct: 41  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ 100

Query: 730 HRNHVKRISSCSNEDFKA-------------LDCLHSTNCSLNIFDKLNIMIDVASALEY 776
           H N VK    C +   +               D L      ++    L     +   +EY
Sbjct: 101 HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEY 160

Query: 777 LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS--MIQTETLVTIGYMAP 824
           L        IH DL  +N+           DFG+ ++L  D+    ++      I + AP
Sbjct: 161 LGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAP 217

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 57/309 (18%), Positives = 107/309 (34%), Gaps = 42/309 (13%)

Query: 239 ISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYL 298
              L    KI+   + +   +      L  +  L      +  +    +  ++ +  + L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLEL 70

Query: 299 LDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPN 358
            DN +     L    +L  +  L L  N       S I     +  LD+ +   + + P 
Sbjct: 71  KDNQITDLAPLK---NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 359 TIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG 418
                           +  LS +L+ +Y+    I    P  ++ L+NL  L +   +++ 
Sbjct: 125 ----------------LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165

Query: 419 SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSL 478
             P     L KL  L    NK++  I   L  L  L  + L  N+ S   P  L N ++L
Sbjct: 166 LTP--LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 479 RSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG 538
               L +  +T+       NL       +  N + GP    I    +      +  N + 
Sbjct: 220 FIVTLTNQTITNQPVFYNNNL-------VVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272

Query: 539 DIPSTIGDL 547
           ++ S I ++
Sbjct: 273 NLTSFINNV 281

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 49/268 (18%), Positives = 101/268 (37%), Gaps = 34/268 (12%)

Query: 312 DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVL 371
           D +L N  ++  G +  + T+     +   +  L       + I                
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG-------------- 58

Query: 372 PTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQ 431
              +  L+ +L  + + +  I   +  L  NL+ +  L+L GN L  ++      LQ ++
Sbjct: 59  ---VQYLN-NLIGLELKDNQIT-DLAPL-KNLTKITELELSGNPLK-NVS-AIAGLQSIK 110

Query: 432 GLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
            L L   ++    P  L  L+ L  L L  N+ + +I   L  LT+L+   +G+ +++ +
Sbjct: 111 TLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL 166

Query: 492 LPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQ 551
             +   NL  +       N +     L   +L  +I ++L  N  S D+   + +  +L 
Sbjct: 167 --TPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQIS-DVSP-LANTSNLF 220

Query: 552 NISLACNGLEGLIPESFGYLTELNLSFN 579
            ++L    +          L   N+   
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 50/289 (17%), Positives = 123/289 (42%), Gaps = 23/289 (7%)

Query: 118 LGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL 177
              L++   +    + ++  +  +      +  L      ++ ++  V   L++++ + L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVT-TIEGVQ-YLNNLIGLEL 70

Query: 178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPK 237
             ++++    +     L  +  L L+ N     +  A++  + ++ L+L   +++   P 
Sbjct: 71  KDNQITD---LAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP- 124

Query: 238 EISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIY 297
            ++ L+ L+ + L  N++   I   +  L NL+ L +G   +  + P  + N+S +  + 
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 298 LLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIP 357
             DN +     L    SLPN+  ++L  N+ S   P  + N S L  + +   + +    
Sbjct: 180 ADDNKISDISPLA---SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 358 --NTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLS 404
             N   +  N + G     I   ++S +N   ++ N+  ++   I+N+S
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATIS-DNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 42/203 (20%), Positives = 88/203 (43%), Gaps = 15/203 (7%)

Query: 381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKL 440
           +   I     N+  ++    ++L  +  L   G  +T +I      L  L GL L  N++
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 441 AGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLK 500
              +   L +L ++  L L+GN    ++ + +  L S+++ DL S ++T V  +    L 
Sbjct: 76  T-DLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDV--TPLAGLS 129

Query: 501 DILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGL 560
           ++    L  N +   +S  +  L  +  +++     S D+ + + +L  L  +    N +
Sbjct: 130 NLQVLYLDLNQITN-IS-PLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKI 185

Query: 561 EGLIP-ESFGYLTELNLSFNKLE 582
             + P  S   L E++L  N++ 
Sbjct: 186 SDISPLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 25/254 (9%)

Query: 194 LHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNN 253
           L     +   K+     +    +    +  L+     ++    + +  L  L  + L++N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 254 KLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDL 313
           ++  ++   +  L  +  L L  N L  V    I  + ++K + L    +     L    
Sbjct: 74  QIT-DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLA--- 126

Query: 314 SLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIP-------NTIGLTGNP 366
            L N++ L L LN+ +   P  +   + L YL +G    S + P        T+    N 
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 367 LDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGR 426
           +  + P  + +L  +L  +++ N  I    P  ++N SNL ++ L    +T         
Sbjct: 185 ISDISP--LASLP-NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 427 LQKLQGLYLPFNKL 440
           L     +  P    
Sbjct: 240 LVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 54/283 (19%), Positives = 104/283 (36%), Gaps = 44/283 (15%)

Query: 99  RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQL 158
            +T L+     +  TI   +  L++L  L L  N+++ D+ P +  + K+  L+ S N L
Sbjct: 42  GITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPL 97

Query: 159 SGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC 218
                    N+S++                     L  +K L L         P  L+  
Sbjct: 98  K--------NVSAI-------------------AGLQSIKTLDLTSTQITDVTP--LAGL 128

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN 278
             LQ+L L   +++   P  ++ LT L+ +S+ N ++    P  +  L  L  L    N 
Sbjct: 129 SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN 338
           +  + P  + ++  + +++L +N +     L    +  N+  + L     +     +  N
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 339 ASKL--VYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLS 379
                 V    G       I +        L   L + I N+S
Sbjct: 240 LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 35/184 (19%)

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
              L+N + +    + +T    VT   L  +  L      +  +I   + +L  L  L L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLD 519
             N+ +    + L NLT +   +L  N L +V  S    L+ I   DL+S  +      D
Sbjct: 71  KDNQITD--LAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQI-----TD 121

Query: 520 IGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP-ESFGYLTELNLSF 578
           +  L                       L +LQ + L  N +  + P      L  L++  
Sbjct: 122 VTPL---------------------AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 160

Query: 579 NKLE 582
            ++ 
Sbjct: 161 AQVS 164

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 36/190 (18%), Positives = 61/190 (32%), Gaps = 60/190 (31%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA-ECEVMKNIRHR 731
               + +  +G GSFG V++ +    G + A+K       + L+ F   E      +   
Sbjct: 57  VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKK------VRLEVFRVEELVACAGLSSP 110

Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIF----------DKL------------NIMID 769
             V    +                  +NIF            +              +  
Sbjct: 111 RIVPLYGAVREGP------------WVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQ 158

Query: 770 VASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGD---RSMIQTET 815
               LEYL   H+  ++H D+K  NV            DFG    L  D   +S++  + 
Sbjct: 159 ALEGLEYL---HTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDY 215

Query: 816 LV-TIGYMAP 824
           +  T  +MAP
Sbjct: 216 IPGTETHMAP 225

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 46/200 (23%)

Query: 665 FSYQDLFRATEKFSKE---------NLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNC 711
            +++D  +   +F+KE          ++G G FG V  GRL       I VAIK      
Sbjct: 26  HTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY 85

Query: 712 -AMALKSFEAECEVMKNIRHRNHVKRISSCSNED----------FKALDC-LHSTNCSLN 759
                + F  E  +M    H N ++     +               +LD  L   +    
Sbjct: 86  TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145

Query: 760 IFDKLNIMIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG 806
           +   + ++  +AS ++YL    +      +H DL  +N+           DFG+GR+L  
Sbjct: 146 VIQLVGMLRGIASGMKYLSDMGY------VHRDLAARNILINSNLVCKVSDFGLGRVLED 199

Query: 807 DRSMIQTET--LVTIGYMAP 824
           D     T     + I + +P
Sbjct: 200 DPEAAYTTRGGKIPIRWTSP 219

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 75.7 bits (187), Expect = 5e-15
 Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 30/160 (18%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNC---AMALKSFEAECEVMKN 727
           +       +G GSFG V +G         + VA+K    +      A+  F  E   M +
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 77

Query: 728 IRHRNHVKRISSCSNEDFK----------ALDCLHSTNCSLNIFDKLNIMIDVASALEYL 777
           + HRN ++          K           LD L        +       + VA  + YL
Sbjct: 78  LDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL 137

Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD 807
                   IH DL  +N+           DFG+ R L  +
Sbjct: 138 ESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQN 174

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 40/183 (21%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHRN 732
             +   +++G G+  +V++GR    G   AIKVF+  +    +     E EV+K + H+N
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 733 HVKRISS---------------CSN-EDFKALDCLHSTNCSLNIFDKLNIMIDVASALEY 776
            VK  +                C     +  L+   S    L   + L ++ DV   + +
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGGMNH 127

Query: 777 LHFSHSTPVIHCDLKPKNVF--------------DFGIGRLLTGDRSMIQTETLV-TIGY 821
           L  +    ++H ++KP N+               DFG  R L  D       +L  T  Y
Sbjct: 128 LRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF---VSLYGTEEY 181

Query: 822 MAP 824
           + P
Sbjct: 182 LHP 184

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 33/156 (21%)

Query: 679 KENLIGVGSFGSVYKGRLHDG---IEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNH 733
           ++  +G G+FG+V KG          VA+K+               AE  VM+ + +   
Sbjct: 21  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 80

Query: 734 VKRISSCSNE------DFKALDCLHS---TNCSLNIFDKLNIMIDVASALEYL---HFSH 781
           V+ I  C  E      +   L  L+     N  +   + + ++  V+  ++YL   +F  
Sbjct: 81  VRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNF-- 138

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGD 807
               +H DL  +NV           DFG+ + L  D
Sbjct: 139 ----VHRDLAARNVLLVTQHYAKISDFGLSKALRAD 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 26/199 (13%)

Query: 312 DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVL 371
           D +        LG +  +    +     + L Y+ +   + + +                
Sbjct: 19  DSTFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDL---------------- 59

Query: 372 PTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQ 431
            T I     +++++ I+N +     P  IS LSNL  L + G  +T         L  L 
Sbjct: 60  -TGIEYAH-NIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115

Query: 432 GLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
            L +  +    SI  ++  L ++N++ L+ N     I   L  L  L+S ++  + +   
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY 174

Query: 492 LPSTFWNLKDILFFDLSSN 510
                 +   +      S 
Sbjct: 175 RG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 30/186 (16%)

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
            + +++L  + L    +T    + +     ++ L +         P  +  L+ L  L +
Sbjct: 40  EAQMNSLTYITLANINVTDLTGIEY--AHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLD 519
            G   +      L  LTSL   D+  +     + +    L                    
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP------------------- 136

Query: 520 IGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP-ESFGYLTELNLSF 578
              +     I+LS N    DI   +  L +L+++++  +G+      E F  L +L    
Sbjct: 137 --KVNS---IDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190

Query: 579 NKLEGE 584
             + G+
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 28/179 (15%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG 160
            A     L    T       ++SLT + L++  ++ D+   I   H +K L  ++   + 
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHAT- 79

Query: 161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
           + + ++  LS++  +R+    ++ +   N+   L  L +L ++ +     I   ++   +
Sbjct: 80  NYNPIS-GLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 221 LQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNL 279
           +  ++L +      I   +  L  L+ ++++ + +       I   P L  L      +
Sbjct: 138 VNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 22/159 (13%), Positives = 58/159 (36%), Gaps = 8/159 (5%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
           +T + ++++N+       +    ++  L +++   + +  P I  +  L+ L      ++
Sbjct: 46  LTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKDVT 101

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCK 219
                    L+S+  + +        +   I   L  +  + L+ N     I   L    
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDIM-PLKTLP 159

Query: 220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE 258
            L+ LN+ F  +       I +   L ++   +  + G+
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 29/182 (15%), Positives = 71/182 (39%), Gaps = 11/182 (6%)

Query: 120 NLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDS 179
              +     L  +  + +I  +   M+ L ++  ++  ++  L+ +     ++ D+ +++
Sbjct: 21  TFKAYLNGLLGQSSTA-NITEA--QMNSLTYITLANINVT-DLTGIE-YAHNIKDLTINN 75

Query: 180 DKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI 239
              +   P+   + L  L+ L +            LS    L LL++       +I  +I
Sbjct: 76  IHATNYNPI---SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 240 SNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLL 299
           + L  +  I L  N    +I   +  LP L++L + F+ +       I +   + ++Y  
Sbjct: 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 300 DN 301
             
Sbjct: 190 SQ 191

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 9e-15
 Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 27/235 (11%)

Query: 215 LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
                     NL  K ++ A+    + L  + +I   N+ ++  +   I YLPN+  L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 72

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPS 334
             N L  + P  + N+  +  ++L +N +    SL     L  ++ L+L  N  S  I +
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLK---DLKKLKSLSLEHNGIS-DI-N 125

Query: 335 FITNASKLVYLDMGTNSFSGIIP-------NTIGLTGNPLDGVLPTSIGNLSM--SLENI 385
            + +  +L  L +G N  + I         +T+ L  N +     + I  L+    L+N+
Sbjct: 126 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI-----SDIVPLAGLTKLQNL 180

Query: 386 YISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKL 440
           Y+S  +I   +  L + L NL +L+L   +           L     +      L
Sbjct: 181 YLSKNHIS-DLRAL-AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.8 bits (183), Expect = 6e-14
 Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 25/234 (10%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
           +  +  ++ +++ ++   +  L ++T L L+ NKL+ DI P +  +  L +L   +N++ 
Sbjct: 45  IDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK 100

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICN--YLHYLKVLFLAKNMFHGQI--PLAL 215
             LSS+  +L  +  + L+ + +S     +I    +L  L+ L+L  N    +I     L
Sbjct: 101 -DLSSLK-DLKKLKSLSLEHNGIS-----DINGLVHLPQLESLYLGNN----KITDITVL 149

Query: 216 SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG 275
           S+  +L  L+L   ++S  +P  ++ LT L+ + L  N +  ++   +  L NL+ L L 
Sbjct: 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF 205

Query: 276 FNNLVGVVPAAIFNMSTVKKIYLLDNSL--LGSFSLGIDLSLPNVERLNLGLNR 327
               +        N+     +   D SL      S   D   PNV+        
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 51/274 (18%), Positives = 97/274 (35%), Gaps = 37/274 (13%)

Query: 312 DLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVL 371
           D +     + NL     +  +       + +  +    +    +                
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV---------------- 58

Query: 372 PTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQ 431
              I  L  ++  ++++   +   I  L +NL NL  L L+ NK+   +  +   L+KL+
Sbjct: 59  -QGIQYLP-NVTKLFLNGNKLT-DIKPL-TNLKNLGWLFLDENKIK-DLS-SLKDLKKLK 112

Query: 432 GLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
            L L  N ++  I   L HL +L +L L  NK +    + L  LT L +  L  N+++ +
Sbjct: 113 SLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI 168

Query: 492 LPSTFWNLKDILFFDLSSNSLD--GPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKD 549
                  L  +    LS N +     L+  + NL V   + L          +   +L  
Sbjct: 169 --VPLAGLTKLQNLYLSKNHISDLRALA-GLKNLDV---LELFSQECLNKPINHQSNLVV 222

Query: 550 LQNISLACNGLEGLIPES-FGYLTELNLSFNKLE 582
              +      L      S  G   + N+ ++  E
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 51/294 (17%), Positives = 103/294 (35%), Gaps = 28/294 (9%)

Query: 118 LGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL 177
               +     NL    ++  +  +      +  +  +++ +  S+  +   L +V  + L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIK-SVQGIQ-YLPNVTKLFL 72

Query: 178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPK 237
           + +KL+   P+     L  L  LFL +N     +  +L   K+L+ L+L    +S     
Sbjct: 73  NGNKLTDIKPL---TNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDING- 126

Query: 238 EISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIY 297
            + +L  L  + L NNK+       +  L  L+ L L  N +  +VP  +  ++ ++ +Y
Sbjct: 127 -LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181

Query: 298 LLDNSLLGSFSLGIDLS----LPNVERLNLGLNRFSGTIPSFITNASKLVYLDM--GTNS 351
           L  N +        DL     L N++ L L          +  +N      +    G+  
Sbjct: 182 LSKNHI-------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 352 FSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSN 405
              II +        +   LP     +S                  ++   L  
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 5e-09
 Identities = 46/258 (17%), Positives = 96/258 (37%), Gaps = 18/258 (6%)

Query: 104 NISSLNLQG----TIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
           N+  L L       +   L +L  L +L+L HN +S DI   +  + +L+ L   +N+++
Sbjct: 88  NLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT 144

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIP--LALSK 217
             ++ ++  L+ +  + L+ +++S    +     L  L+ L+L+KN     I    AL+ 
Sbjct: 145 -DITVLS-RLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKN----HISDLRALAG 195

Query: 218 CKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN 277
            K L +L L  ++         SNL +   +   +  L               N+     
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 255

Query: 278 NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFIT 337
                V    +   T+ K     +  +      +     +V+   +     +GT  +   
Sbjct: 256 EFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPK 315

Query: 338 NASKLVYLDMGTNSFSGI 355
             +K  Y+  G  +    
Sbjct: 316 PPTKQGYVFKGWYTEKNG 333

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 77.4 bits (190), Expect = 9e-15
 Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 41/191 (21%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALK-SFEAECEVMKNIR 729
           +    +  +  +G G FG V +      G +VAIK   Q  +   +  +  E ++MK + 
Sbjct: 11  QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLN 70

Query: 730 HRNHVK---------RISS----------CSNEDFKALDCLHSTNCSLNIFDKLNIMIDV 770
           H N V          +++           C   D +         C L       ++ D+
Sbjct: 71  HPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDI 130

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDRSMIQTETLV 817
           +SAL YLH +    +IH DLKP+N+              D G  + L            V
Sbjct: 131 SSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELC---TEFV 184

Query: 818 -TIGYMAPGLL 827
            T+ Y+AP LL
Sbjct: 185 GTLQYLAPELL 195

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 38/180 (21%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNCAMALKS-FEAECEVMKNIR 729
           E+      IG G FG V++G         + VAIK      + +++  F  E   M+   
Sbjct: 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 449

Query: 730 HRNHVKRISSCSNE------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYL 777
           H + VK I   +              +      L     SL++   +     +++AL YL
Sbjct: 450 HPHIVKLIGVITENPVWIIMELCTLGEL--RSFLQVRKFSLDLASLILYAYQLSTALAYL 507

Query: 778 ---HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               F      +H D+  +NV           DFG+ R +        ++  + I +MAP
Sbjct: 508 ESKRF------VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAP 561

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 33/181 (18%), Positives = 59/181 (32%), Gaps = 36/181 (19%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-----GIEVAIKVFHQNC-AMALKSFEAECEVMKNI 728
               K   +G G FG V            G  VA+K    +        ++ E ++++ +
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL 90

Query: 729 RHRNHVKRISSCSNEDFKA-------------LDCLHSTNCSLNIFDKLNIMIDVASALE 775
            H + +K    C +    +              D L   +  L     L     +   + 
Sbjct: 91  YHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLA--QLLLFAQQICEGMA 148

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS--MIQTETLVTIGYMA 823
           YLH  H    IH DL  +NV           DFG+ + +        ++ +    + + A
Sbjct: 149 YLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA 205

Query: 824 P 824
           P
Sbjct: 206 P 206

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 54/236 (22%)

Query: 617 KRRTRRKSKKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQ-------- 668
               RR S    +L+    P    +     L+       G ++   +  +          
Sbjct: 13  HHGRRRASVAAGILVPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALN 72

Query: 669 -DLFRATEKFSKE---------NLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNC-AM 713
            +L +A +               +IG G FG VY G L D     I  A+K  ++     
Sbjct: 73  PELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG 132

Query: 714 ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA------------LDCLHSTNCSLNIF 761
            +  F  E  +MK+  H N +  +  C   +                + + +   +  + 
Sbjct: 133 EVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVK 192

Query: 762 DKLNIMIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLL 804
           D +   + VA  +++L    F      +H DL  +N            DFG+ R +
Sbjct: 193 DLIGFGLQVAKGMKFLASKKF------VHRDLAARNCMLDEKFTVKVADFGLARDM 242

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 75/234 (32%)

Query: 648 ALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKV 706
             + +S  G + +TL R                 ++G     +  +      G    + V
Sbjct: 66  PFRVESELGERPRTLVR---------------GTVLGQEDPYAYLEATDQETGESFEVHV 110

Query: 707 FH---QNCAMALKSFEAECEVMKNIRHRNHVKRIS------------------------- 738
            +   +  + A+K  + E   ++ +R   + K+                           
Sbjct: 111 PYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRL 170

Query: 739 -----------------SCSNED-FKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
                              + +   + L    ST+ SL    +L + + V   L  LH  
Sbjct: 171 DERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH-- 228

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               ++H  L+P ++            F                        A 
Sbjct: 229 -HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAE 281

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 45/181 (24%)

Query: 666 SYQDLFRATEKFSKE---------NLIGVGSFGSVYKGRLHDG-----IEVAIKVFHQNC 711
              D  +A  KF+ E          +IG G FG VYKG L        + VAIK      
Sbjct: 26  MGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY 85

Query: 712 AMALKS-FEAECEVMKNIRHRNHVKRISSCSNED-------FKALDCLHS----TNCSLN 759
               +  F  E  +M    H N ++     S          +     L       +   +
Sbjct: 86  TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFS 145

Query: 760 IFDKLNIMIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG 806
           +   + ++  +A+ ++YL   ++      +H DL  +N+           DFG+ R+L  
Sbjct: 146 VLQLVGMLRGIAAGMKYLANMNY------VHRDLAARNILVNSNLVCKVSDFGLSRVLED 199

Query: 807 D 807
           D
Sbjct: 200 D 200

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 36/180 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG-----IEVAIKVFHQNC-AMALKSFEAECEVMKNI 728
            +F K  ++G G+FG+VYKG          I VAIK   +     A K    E  VM ++
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74

Query: 729 RHRNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYL- 777
            + +  + +  C                 LD +     ++     LN  + +A  + YL 
Sbjct: 75  DNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE 134

Query: 778 --HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE-TLVTIGYMAP 824
                     +H DL  +NV           DFG+ +LL  +      E   V I +MA 
Sbjct: 135 DRRL------VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 188

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 47/186 (25%)

Query: 680 ENLIGVGSFGSVYKGRLHDG----IEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNH 733
             ++G G FGSV +G L       ++VA+K    + +    ++ F +E   MK+  H N 
Sbjct: 39  GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNV 98

Query: 734 VKRISSCSNEDFKALDCL---------------------HSTNCSLNIFDKLNIMIDVAS 772
           ++ +  C     + +                         +    + +   L  M+D+A 
Sbjct: 99  IRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIAL 158

Query: 773 ALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQTETLVT 818
            +EYL   +F      +H DL  +N            DFG+ + + +GD         + 
Sbjct: 159 GMEYLSNRNF------LHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMP 212

Query: 819 IGYMAP 824
           + ++A 
Sbjct: 213 VKWIAI 218

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 44/269 (16%), Positives = 68/269 (25%), Gaps = 47/269 (17%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSI 375
            N   L   L +         +    L  +++  N    +I                   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE--------------ADVF 75

Query: 376 GNLSMSLENIYISNCNIGGSIP-QLISNLSNLLLLDLEGNKLTGSIP-VTFGRLQKLQGL 433
            NL   L  I I   N    I  +   NL NL  L +    +   +P V      +   L
Sbjct: 76  SNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLL 133

Query: 434 YLPFNKLAGSIPDQ-LCHL-ARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
            +  N    +I       L      L L  N       S              +N L  +
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 492 LPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQ 551
               F      +  D+S   +                 +L               LK L+
Sbjct: 194 PNDVFHGASGPVILDISRTRIH----------------SLPSYGLEN--------LKKLR 229

Query: 552 NISLACNGLEGLIP-ESFGYLTELNLSFN 579
             S     L+ L   E    L E +L++ 
Sbjct: 230 ARST--YNLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 40/261 (15%), Positives = 83/261 (31%), Gaps = 27/261 (10%)

Query: 85  VCNWIGITCNVNSHRVTAL------NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNK 133
           +C+           +VT +      N   L         I          L  + +S N 
Sbjct: 6   ICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 134 LSGDIPPSIFT-MHKLKFLDFSD-NQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNI 190
           +   I   +F+ + KL  +     N L   ++   F NL ++  + + +  +   LP   
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVH 123

Query: 191 CNYLHYLKVLFLAKNMFHGQIPLALSK--CKRLQLLNLGFKKLSGAIPKEISNLTILRKI 248
             +     +L +  N+    I             +L L    +   I     N T L ++
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 249 SL-RNNKLRGEIPHEI-GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGS 306
           +L  NN L  E+P+++         L +    +  +    + N+  ++     +   L +
Sbjct: 183 NLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT 241

Query: 307 FSLGIDLSLPNVERLNLGLNR 327
                   L  +   +L    
Sbjct: 242 LE-----KLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 35/228 (15%), Positives = 68/228 (29%), Gaps = 17/228 (7%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQ-LCHLAR 453
            IP  +    N + L     KL       F     L+ + +  N +   I      +L +
Sbjct: 23  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 454 LNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
           L+ + +        I      NL +L+   + +  +  +      +    +  D+  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 513 -----DGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPES 567
                            +   + L++N       S     +  +      N LE L  + 
Sbjct: 141 IHTIERNSFVGLSFESVI---LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 568 F---GYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQ 612
           F        L++S  ++   +P  G   N           L  LP L+
Sbjct: 198 FHGASGPVILDISRTRIH-SLPSYG-LENLKKLRARSTYNLKKLPTLE 243

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 45/272 (16%), Positives = 84/272 (30%), Gaps = 35/272 (12%)

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLS 159
                    +   IP  L    +   L     KL   I    F+    L+ ++ S N + 
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 67

Query: 160 GSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC 218
             + +  F NL  + +IR++       +       L  L+ L ++       +P  + K 
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLP-DVHKI 125

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI--GYLPNLENLVLGF 276
             LQ + L                       +++N     I      G       L L  
Sbjct: 126 HSLQKVLL----------------------DIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 277 NNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI 336
           N +   +  + FN + + ++ L DN+ L      +         L++   R   ++PS+ 
Sbjct: 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 221

Query: 337 -TNASKLVYLDMGTNSFSGIIPNTIGLTGNPL 367
             N  KL             +   + L    L
Sbjct: 222 LENLKKLRARSTYNLKKLPTLEKLVALMEASL 253

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 15/172 (8%)

Query: 353 SGIIPNT--IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI-SNLSNLLLL 409
             +   T  + L+ N L  +          +L ++ +S+ ++   I       + NL  L
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYL 93

Query: 410 DLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIP-DQLCHLARLNTLGLAGNKFSGS 467
           DL  N L  ++    F  LQ L+ L L  N +   +  +    +A+L  L L+ N+ S  
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-R 150

Query: 468 IP----SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDI--LFFDLSSNSLD 513
            P         L  L   DL SN+L  +  +    L         L +N L+
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 31/184 (16%)

Query: 100 VTALNISSLNLQGTIPPQ--LGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDN 156
              L++S  NL   +  +     L++L +L LSHN L+  I    F  +  L++LD S N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 157 QLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
            L  +L    F +L ++  + L ++ +   +  N    +  L+ L+L++N          
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN---------- 146

Query: 216 SKCKRLQLLNLG-FKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
               ++    +   K  +         L  L  + L +NKL+     ++  LP      L
Sbjct: 147 ----QISRFPVELIKDGN--------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 275 GFNN 278
             +N
Sbjct: 195 YLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 43/223 (19%), Positives = 63/223 (28%), Gaps = 73/223 (32%)

Query: 267 PNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLN 326
                L L  NNL  +                                L N+  L L  N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPT------------------------RLTNLHSLLLSHN 74

Query: 327 RFSGTIPSFI-TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENI 385
             +  I S        L YLD               L+ N L      ++          
Sbjct: 75  HLN-FISSEAFVPVPNLRYLD---------------LSSNHL-----HTLD--------- 104

Query: 386 YISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSI 444
                        L S+L  L +L L  N +   +    F  + +LQ LYL  N+++   
Sbjct: 105 -----------EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 445 PDQ----LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDL 483
           P +       L +L  L L+ NK      + L  L +     L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 214 ALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEI-GYLPNLEN 271
             ++   L  L L    L+  I  E    +  LR + L +N L   +   +   L  LE 
Sbjct: 59  TPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEV 116

Query: 272 LVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL--LGSFSLGIDLSLPNVERLNLGLNRFS 329
           L+L  N++V V   A  +M+ ++K+YL  N +       +     LP +  L+L  N+  
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 330 GTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLD 368
               + +      V              N + L  NPL+
Sbjct: 177 KLPLTDLQKLPAWVK-------------NGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 456 TLGLAGNKFSGSIPS--CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN--- 510
            L L+ N  S  + +      LT+L S  L  N L  +    F  + ++ + DLSSN   
Sbjct: 43  LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 511 SLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY 570
           +LD  L  D+  L V   + L  N+      +   D+  LQ + L+ N +     E    
Sbjct: 102 TLDEFLFSDLQALEV---LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 571 ------LTELNLSFNKLEGEIPRG 588
                 L  L+LS NKL+ ++P  
Sbjct: 159 GNKLPKLMLLDLSSNKLK-KLPLT 181

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 47/173 (27%), Positives = 68/173 (39%), Gaps = 33/173 (19%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           ++      IG G FG V  G    G +VA+K    + A A ++F AE  VM  +RH N V
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND-ATA-QAFLAEASVMTQLRHSNLV 249

Query: 735 KRISSCSNED--------FKALDCLHS-----TNCSLNIFDKLNIMIDVASALEYLHFSH 781
           + +     E         + A   L           L     L   +DV  A+EYL  ++
Sbjct: 250 QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN 309

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               +H DL  +NV           DFG    LT + S  Q    + + + AP
Sbjct: 310 ---FVHRDLAARNVLVSEDNVAKVSDFG----LTKEASSTQDTGKLPVKWTAP 355

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
           +L      +++S   +       +   + L  L+L+  +LT  + V  G L  L  L L 
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLS 85

Query: 437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPST 495
            N+L  S+P     L  L  L ++ N+ + S+P   L  L  L+   L  N L ++ P  
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 496 FWNLKDILFFDLSSNSLDGPLSLDIG---NLRVVIGINLSRNNFSGDIPSTIGDLKDLQN 552
                 +    L++N+L     L  G    L  +  + L  N+    IP        L  
Sbjct: 144 LTPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPF 199

Query: 553 ISLACN 558
             L  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 46/197 (23%), Positives = 66/197 (33%), Gaps = 33/197 (16%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
           ++P  +    +  +L L  N L      T     +L  L L   +L   +      L  L
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVL 79

Query: 455 NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDG 514
            TL L+ N+   S+P     L +L   D+  NRLTS+       L ++    L  N L  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137

Query: 515 PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYL 571
                           L     +            L+ +SLA N L  L          L
Sbjct: 138 ---------------TLPPGLLTP--------TPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 572 TELNLSFNKLEGEIPRG 588
             L L  N L   IP+G
Sbjct: 175 DTLLLQENSLYT-IPKG 190

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 13/187 (6%)

Query: 120 NLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDS 179
            ++S   +N     L+  +PP +        L  S+N L     +     + +  + LD 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 180 DKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI 239
            +L+ +L V+    L  L  L L+ N     +PL       L +L++ F +L+ ++P   
Sbjct: 65  AELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 240 -SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFNNLVGVVPAAIF-NMSTVKKI 296
              L  L+++ L+ N+L+  +P  +    P LE L L  NNL   +PA +   +  +  +
Sbjct: 120 LRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177

Query: 297 YLLDNSL 303
            L +NSL
Sbjct: 178 LLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 51/249 (20%), Positives = 82/249 (32%), Gaps = 52/249 (20%)

Query: 240 SNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLL 299
           S +    +++     L   +P ++    +   L L  N L     A +   + + ++ L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 300 DNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT 359
              L     L +D +LP +  L+L  N+   ++P        L  LD+  N  + +    
Sbjct: 64  RAELT---KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-- 117

Query: 360 IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGS 419
                    G L                               L  L  L L+GN+L  +
Sbjct: 118 ---------GAL-----------------------------RGLGELQELYLKGNELK-T 138

Query: 420 IPV-TFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGLAGNKFSGSIPSCLGNLTS 477
           +P        KL+ L L  N L   +P  L   L  L+TL L  N    +IP        
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 478 LRSPDLGSN 486
           L    L  N
Sbjct: 197 LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 47/194 (24%), Positives = 70/194 (36%), Gaps = 40/194 (20%)

Query: 401 SNLSNLLLLDLEGNKLT---GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTL 457
           S +++ L ++ +   LT     +P           L+L  N L       L    RL  L
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKD------TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 458 GLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLS 517
            L   + +  +    G L  L + DL  N+L S LP     L  +   D+S N L     
Sbjct: 61  NLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT---- 113

Query: 518 LDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTEL 574
                       +L      G        L +LQ + L  N L+ L P        L +L
Sbjct: 114 ------------SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 575 NLSFNKLEGEIPRG 588
           +L+ N L  E+P G
Sbjct: 154 SLANNNLT-ELPAG 166

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 104 NISSLNLQG----TIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQL 158
            + +L+L      ++P     L +LT L++S N+L+  +P      + +L+ L    N+L
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 159 SGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKN 205
             +L          +  + L ++ L+ ELP  + N L  L  L L +N
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 31/146 (21%)

Query: 469 PSC-LGNLTSLRSPDLGSNRLTSV---------------------LPSTFWNLKDILFFD 506
           P C +  + S    +     LT++                       +T      +   +
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 507 LSSNSLDG-PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP 565
           L    L    +   +  L  +   +LS N     +P     L  L  + ++ N L  L  
Sbjct: 62  LDRAELTKLQVDGTLPVLGTL---DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 566 ESF---GYLTELNLSFNKLEGEIPRG 588
            +    G L EL L  N+L+  +P G
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPG 142

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 30/174 (17%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
                    IG GS G V   R  H G +VA+K+         +    E  +M++ +H N
Sbjct: 44  RLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN 103

Query: 733 HVKRISSCSNEDF-----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            V+   S    +               D +          ++  I     + L+ L + H
Sbjct: 104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV-----RLNEEQIATVCEAVLQALAYLH 158

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           +  VIH D+K  ++           DFG    ++ D    + ++LV T  +MAP
Sbjct: 159 AQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAP 210

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 30/174 (17%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            +K+++   IG G+ G+VY    +  G EVAI+  +       +    E  VM+  ++ N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 733 HVKRISSCSNEDF-----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            V  + S    D               D +  T       D+  I       L+ L F H
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET-----CMDEGQIAAVCRECLQALEFLH 133

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           S  VIH D+K  N+           DFG    +T ++S  +  T+V T  +MAP
Sbjct: 134 SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAP 185

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 29/151 (19%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           ++      IG G FG V  G    G +VA+K    + A A ++F AE  VM  +RH N V
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND-ATA-QAFLAEASVMTQLRHSNLV 77

Query: 735 KRISSCSNED--------FKALDCLHS-----TNCSLNIFDKLNIMIDVASALEYLHFSH 781
           + +     E         + A   L           L     L   +DV  A+EYL  ++
Sbjct: 78  QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN 137

Query: 782 STPVIHCDLKPKNVF----------DFGIGR 802
               +H DL  +NV           DFG+ +
Sbjct: 138 ---FVHRDLAARNVLVSEDNVAKVSDFGLTK 165

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 49/193 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVM-KNIRHRNH 733
                E ++G GS G+V       G  VA+K    +          E +++ ++  H N 
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNV 71

Query: 734 VKRISSCSNEDF----------------KALDCLHSTNCSLNIFDKLNIMIDVASALEYL 777
           ++   S + + F                ++ +           ++ ++++  +AS + +L
Sbjct: 72  IRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHL 131

Query: 778 HFSHSTPVIHCDLKPKNVF-----------------------DFGIGRLLTGDRSMIQTE 814
              HS  +IH DLKP+N+                        DFG+ + L   +S  +T 
Sbjct: 132 ---HSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTN 188

Query: 815 --TLV-TIGYMAP 824
                 T G+ AP
Sbjct: 189 LNNPSGTSGWRAP 201

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 48/184 (26%)

Query: 683 IGVGSFGSVYKGRLHDG----IEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKR 736
           +G G FGSV + +L       ++VA+K+   +      ++ F  E   MK   H +  K 
Sbjct: 31  LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKL 90

Query: 737 ISSCSNEDFKALDC-------------LHS---------TNCSLNIFDKLNIMIDVASAL 774
           +        K                 LH+            +L +   +  M+D+A  +
Sbjct: 91  VGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGM 150

Query: 775 EYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQTETLVTIG 820
           EYL   +F      IH DL  +N            DFG+ R + +GD       + + + 
Sbjct: 151 EYLSSRNF------IHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVK 204

Query: 821 YMAP 824
           ++A 
Sbjct: 205 WLAL 208

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 34/199 (17%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCH-LAR 453
           +IP  I   ++   LDL+ NKL+      F RL KL+ LYL  NKL  ++P  +   L  
Sbjct: 30  AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 454 LNTLGLAGNKFSGSIPSCL-GNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
           L TL +  NK   ++P  +   L +L    L  N+L S+ P  F +L  + +  L  N L
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 513 DGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---G 569
                            +L +  F          L  L+ + L  N L+ +   +F    
Sbjct: 146 Q----------------SLPKGVFDK--------LTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 570 YLTELNLSFNKLEGEIPRG 588
            L  L L  N+L+  +P G
Sbjct: 182 ELKTLKLDNNQLK-RVPEG 199

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 26/202 (12%)

Query: 317 NVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNT-IGLTGNPLDGVLPTSI 375
           + ++L+L  N+ S          +KL  L +  N    +       L             
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK------------ 85

Query: 376 GNLSMSLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGL 433
                +LE +++++  +  ++P  +   L NL  L L+ N+L  S+P   F  L KL  L
Sbjct: 86  -----NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138

Query: 434 YLPFNKLAGSIPDQLC-HLARLNTLGLAGNKFSGSIPSCL-GNLTSLRSPDLGSNRLTSV 491
            L +N+L  S+P  +   L  L  L L  N+    +P      LT L++  L +N+L  V
Sbjct: 139 SLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRV 196

Query: 492 LPSTFWNLKDILFFDLSSNSLD 513
               F +L+ +    L  N  D
Sbjct: 197 PEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 50/234 (21%)

Query: 86  CNWIGITCNVNSHRVTAL------NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNKL 134
           CN    + + +S ++TA+      +   L+LQ     ++P +    L+ L  L L+ NKL
Sbjct: 14  CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73

Query: 135 SGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNY 193
              +P  IF  +  L+ L  +DN+L                           LP+ + + 
Sbjct: 74  Q-TLPAGIFKELKNLETLWVTDNKLQ-------------------------ALPIGVFDQ 107

Query: 194 LHYLKVLFLAKNMFHGQI----PLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKI 248
           L  L  L L +N    Q+    P       +L  L+LG+ +L  ++PK +   LT L+++
Sbjct: 108 LVNLAELRLDRN----QLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162

Query: 249 SLRNNKLRGEIPHEI-GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDN 301
            L NN+L+  +P      L  L+ L L  N L  V   A  ++  +K + L +N
Sbjct: 163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 54/239 (22%)

Query: 229 KKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAI 287
           KKL+ AIP  I ++   L    L++NKL          L  L  L L  N L   +PA I
Sbjct: 26  KKLT-AIPSNIPADTKKLD---LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI 80

Query: 288 FN-MSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI-TNASKLVYL 345
           F  +  ++ +++ DN L  +  +G+   L N+  L L  N+   ++P  +  + +KL YL
Sbjct: 81  FKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138

Query: 346 DMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQ-LISNLS 404
            +G N                                            S+P+ +   L+
Sbjct: 139 SLGYNELQ-----------------------------------------SLPKGVFDKLT 157

Query: 405 NLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGN 462
           +L  L L  N+L   +P   F +L +L+ L L  N+L          L +L  L L  N
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 70.7 bits (174), Expect = 2e-13
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 33/170 (19%)

Query: 682 LIGVGSFGSVYKGRLHDGI---EVAIKVFHQNCAM---ALKSFEAECEVMKNIRHRNHVK 735
            +G G   +VY     D I   +VAIK            LK FE E      + H+N V 
Sbjct: 18  KLGGGGMSTVYLA--EDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVS 75

Query: 736 RISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPV 785
            I     +D             L     ++  L++   +N    +   +++   +H   +
Sbjct: 76  MIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKH---AHDMRI 132

Query: 786 IHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           +H D+KP+N          +FDFGI + L+ + S+ QT  ++ T+ Y +P
Sbjct: 133 VHRDIKPQNILIDSNKTLKIFDFGIAKALS-ETSLTQTNHVLGTVQYFSP 181

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 65/205 (31%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEV---MKN 727
           R T +F +   IG G FGSV+K     DG   AIK   +  A ++    A  EV      
Sbjct: 8   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 67

Query: 728 IRHRNHVKRISS-------------CSNEDFKALDCLHSTNCSLNIFDK---LNIMIDVA 771
            +H + V+  S+             C+       D +      ++ F +    ++++ V 
Sbjct: 68  GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSL--ADAISENYRIMSYFKEAELKDLLLQVG 125

Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF-----------------------------DFGIGR 802
             L Y+H      ++H D+KP N+F                             D G   
Sbjct: 126 RGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVT 182

Query: 803 LLTGDRSMIQTETLVTIG---YMAP 824
            ++  +           G   ++A 
Sbjct: 183 RISSPQVE--------EGDSRFLAN 199

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 35/197 (17%)

Query: 655 RGGKSKTLRRFSYQDLFRA---TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKV---F 707
            GG++ +L+     +LF      + FS    IG GSFG+VY  R + +   VAIK     
Sbjct: 31  AGGRAGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYS 90

Query: 708 HQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF----------KALDCLHSTNCS 757
            +      +    E   ++ +RH N ++       E             A D L      
Sbjct: 91  GKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKP 150

Query: 758 LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD 807
           L   +   +       L YL   HS  +IH D+K  N+           DFG   ++   
Sbjct: 151 LQEVEIAAVTHGALQGLAYL---HSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA 207

Query: 808 RSMIQTETLVTIGYMAP 824
            S + T       +MAP
Sbjct: 208 NSFVGTPY-----WMAP 219

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 70.8 bits (173), Expect = 4e-13
 Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 50/196 (25%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR------LHDGIEVAIKVFHQNCAMALKSFEAECEVMKN 727
           ++     +L+G G+F  VY+          +  +  +KV                E +K 
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123

Query: 728 IRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLN-----------------IMIDV 770
                 +K  S+   ++   L     +  +L   + +N                   + +
Sbjct: 124 SMQHMFMKFYSAHLFQNGSVLVGELYSYGTL--LNAINLYKNTPEKVMPQGLVISFAMRM 181

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF---------------------DFGIGRLLTGDRS 809
              +E +H      +IH D+KP N                       D G    +     
Sbjct: 182 LYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPK 238

Query: 810 MIQTETLV-TIGYMAP 824
                    T G+   
Sbjct: 239 GTIFTAKCETSGFQCV 254

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 70.5 bits (172), Expect = 5e-13
 Identities = 26/214 (12%), Positives = 45/214 (21%), Gaps = 63/214 (29%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQ---NCAMALKSFEAECEVM 725
           L +   K      + VG    V+  R +    + A+KVF     N    L+         
Sbjct: 57  LSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAA 116

Query: 726 KNIRHRNHVKRIS-----------------------------------------SCSNED 744
             +   +  +                                            S   E 
Sbjct: 117 ARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLEL 176

Query: 745 -FKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------- 796
            F  LD ++       I     +   +      L       ++H    P N+F       
Sbjct: 177 LFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKG---LVHGHFTPDNLFIMPDGRL 233

Query: 797 ---DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
              D      +              + Y     L
Sbjct: 234 MLGDVSALWKVGTRGPASSV----PVTYAPREFL 263

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 28/174 (16%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            E +     +G G+FG VYK +    G   A KV        L+ +  E E++    H  
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPY 77

Query: 733 HVKRISSCSNEDF-----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            VK + +  ++                  +   +  L       +   +  AL +LH   
Sbjct: 78  IVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKR 137

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              +IH DLK  NV           DFG+       +++ + ++ + T  +MAP
Sbjct: 138 ---IIHRDLKAGNVLMTLEGDIRLADFGVSAKNL--KTLQKRDSFIGTPYWMAP 186

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 69.1 bits (170), Expect = 8e-13
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 52/186 (27%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            + F    ++G G+F  V+  +    G   A+K   ++ A    S E E  V+K I+H N
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN 67

Query: 733 HVKRISSCSNEDFKALDCLH-----STNCSLNIFDKL------------NIMIDVASALE 775
            V        + +++    +      +   L  FD++             ++  V SA++
Sbjct: 68  IVTLE-----DIYESTTHYYLVMQLVSGGEL--FDRILERGVYTEKDASLVIQQVLSAVK 120

Query: 776 YLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLVTI--- 819
           YLH +    ++H DLKP+N             + DFG+ +       M Q   + T    
Sbjct: 121 YLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSK-------MEQNGIMSTACGT 170

Query: 820 -GYMAP 824
            GY+AP
Sbjct: 171 PGYVAP 176

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 69.3 bits (169), Expect = 1e-12
 Identities = 32/248 (12%), Positives = 67/248 (27%), Gaps = 69/248 (27%)

Query: 634 VLPLSTALIIAVPLALKYKSIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYK 693
           V   S  +  A    +       G+   +      +L        +  ++G     +  +
Sbjct: 36  VRTTSEYMQSAADSLVSTSLWNTGQPFRVES----ELGERPRTLVRGTVLGQEDPYAYLE 91

Query: 694 GR-LHDGIEVAIKVF----------------------------HQNCAMALKSFEAECEV 724
                 G    + V                             +Q  A     F    ++
Sbjct: 92  ATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151

Query: 725 MKNIRHRNHVK------------------RISSCSNEDFKALDCLHSTNCSLNIFDKLNI 766
           +K+ + +  ++                  R+ S      + L    ST+ SL    +L +
Sbjct: 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQL 211

Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETL 816
            + V   L  LH      ++H  L+P ++            F         R   +  + 
Sbjct: 212 TLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLV-----RDGARVVSS 263

Query: 817 VTIGYMAP 824
           V+ G+  P
Sbjct: 264 VSRGFEPP 271

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 35/173 (20%)

Query: 680 ENLIGVGSFGSVYKGRLHDGI---EVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNH 733
             L+G G  G VY+    D +    VA+K+  +  +   +     + E      ++  + 
Sbjct: 39  RRLVGRGGMGDVYEAE--DTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHV 96

Query: 734 VKRISSCSNEDFKA-----------LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
           V  I      D +            L  +      L     + I+  + SAL+    +H+
Sbjct: 97  V-PIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDA---AHA 152

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
               H D+KP+N+           DFGI    T D  + Q    V T+ YMAP
Sbjct: 153 AGATHRDVKPENILVSADDFAYLVDFGIASATT-DEKLTQLGNTVGTLYYMAP 204

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 44/174 (25%), Positives = 63/174 (36%), Gaps = 30/174 (17%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            E F     +G GS+GSVYK      G  VAIK         L+    E  +M+     +
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQV--PVESDLQEIIKEISIMQQCDSPH 85

Query: 733 HVKRISSCSNEDF-----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            VK   S                    D +   N       +  I   + S L+ L + H
Sbjct: 86  VVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRN---KTLTEDEIATILQSTLKGLEYLH 142

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
               IH D+K  N+           DFG+   LT   +M +  T++ T  +MAP
Sbjct: 143 FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAP 194

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 35/206 (16%), Positives = 72/206 (34%), Gaps = 17/206 (8%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQL-CHLA 452
            IP L     +   L L    L  +IP   F  L  +  +Y+  +     +      +L+
Sbjct: 25  RIPSL---PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 453 RLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILF-FDLSSN 510
           ++  + +   +    I    L  L  L+   + +  L      T     DI F  +++ N
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 511 SLDGPLSLDI--GNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLA-CNGLEGLIPES 567
                + ++   G     + + L  N F+  +     +   L  + L     L  +  ++
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 568 FG----YLTELNLSFNKLEGEIPRGG 589
           FG      + L++S   +   +P  G
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 47/241 (19%)

Query: 266 LPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGL 325
            P+ + L L   +L  +   A  N+  + +IY+  +  L         +L  V  + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 326 NRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENI 385
            R              L Y+D                        LP         L+ +
Sbjct: 90  TR-------------NLTYIDPDA--LKE----------------LP--------LLKFL 110

Query: 386 YISNCNIGGSIPQL--ISNLSNLLLLDLEGNKLTGSIPV-TFGRLQK-LQGLYLPFNKLA 441
            I N  +    P L  + +     +L++  N    SIPV  F  L      L L  N   
Sbjct: 111 GIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 442 GSIPDQLCHLARLNTLGLAGNKFSGSIPS-CLGNLTS-LRSPDLGSNRLTSVLPSTFWNL 499
            S+     +  +L+ + L  NK+   I     G + S     D+    +T++      +L
Sbjct: 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228

Query: 500 K 500
           K
Sbjct: 229 K 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 18/213 (8%)

Query: 92  TCNVNSHRVTAL-----NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNKLSGDIPPS 141
              V    +  +     +  +L L      TIP     NL +++ + +S +     +   
Sbjct: 15  DFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH 74

Query: 142 IFT-MHKLKFLDFSDNQLSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKV 199
            F  + K+  ++  + +    +       L  +  + + +  L     +          +
Sbjct: 75  SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134

Query: 200 LFLAKNMFHGQIPLAL--SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG 257
           L +  N +   IP+      C     L L     + ++     N T L  + L  NK   
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 258 EIPHEI--GYLPNLENLVLGFNNLVGVVPAAIF 288
            I  +   G       L +   ++   +P+   
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGL 225

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 47/183 (25%)

Query: 683 IGVGSFGSVYKGRLHDG------IEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVK 735
           +G G+FG VY+G++         ++VA+K   + C       F  E  ++    H+N V+
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97

Query: 736 RISSCSNE----------------DF-KALDCLHSTNCSLNIFDKLNIMIDVASALEYL- 777
            I                       F +      S   SL + D L++  D+A   +YL 
Sbjct: 98  CIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 157

Query: 778 --HFSHSTPVIHCDLKPKNVF-------------DFGIGRLL-TGDRSMIQTETLVTIGY 821
             HF      IH D+  +N               DFG+ R +            ++ + +
Sbjct: 158 ENHF------IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 211

Query: 822 MAP 824
           M P
Sbjct: 212 MPP 214

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 401 SNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLG 458
             L  L  ++   NK+T  I    F     +  + L  N+L  ++  ++   L  L TL 
Sbjct: 54  KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 459 LAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           L  N+ +  + +     L+S+R   L  N++T+V P  F  L  +   +L +N  +
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVT--FGRLQKLQGLYLPFNKLAGSIPDQLCHLA 452
            IP+ I        L L  N+ T  +  T  F +L +L+ +    NK+           +
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 453 RLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNS 511
            +N + L  N+   ++       L SL++  L SNR+T V   +F  L  +    L  N 
Sbjct: 82  GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 512 L 512
           +
Sbjct: 141 I 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 33/161 (20%)

Query: 122 SSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTFN-LSSVLDIRLDS 179
                L L++N+ +      IF  + +L+ ++FS+N+++  +    F   S V +I L S
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 180 DKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI 239
           ++L   +   +   L  LK L L  N              R+             +  + 
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSN--------------RIT-----------CVGNDS 124

Query: 240 -SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFNN 278
              L+ +R +SL +N++   +       L +L  L L   N
Sbjct: 125 FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 104 NISSLNLQG----TIPPQL-GNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQ 157
            ++ + L       +  ++   L SL TL L  N+++  +    F  +  ++ L   DNQ
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140

Query: 158 LSGSLSSVTF-NLSSVLDIRLDS 179
           ++ +++   F  L S+  + L +
Sbjct: 141 IT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 29/177 (16%), Positives = 49/177 (27%), Gaps = 56/177 (31%)

Query: 267 PNLENLVLGFNNLVGVVPAAIF-NMSTVKKIYLLDNSL----LGSFSLGIDLSLPNVERL 321
                L L  N    +    IF  +  ++KI   +N +     G+F          V  +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-----GASGVNEI 86

Query: 322 NLGLNRFSGTIPSFI-TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSM 380
            L  NR    +   +      L  L + +N  +                           
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT--------------------------- 118

Query: 381 SLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYL 435
                          +       LS++ LL L  N++T ++    F  L  L  L L
Sbjct: 119 --------------CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNL 160

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 401 SNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQL-CHLARLNTLG 458
           S    L  +DL  N+++  +    F  L+ L  L L  NK+   +P  L   L  L  L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 459 LAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           L  NK +  +      +L +L    L  N+L ++   TF  L+ I    L+ N   
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
            IP  +     +  + LE N +    P  F   +KL+ + L  N+++   PD    L  L
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 455 NTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
           N+L L GNK +  +P      L SL+   L +N++  +    F +L ++    L  N L
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 31/159 (19%)

Query: 122 SSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSD 180
            ++T + L  N +   IPP  F+   KL+ +D S+NQ+S                     
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS--------------------- 69

Query: 181 KLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI- 239
               EL  +    L  L  L L  N               LQLL L   K++  +  +  
Sbjct: 70  ----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAF 124

Query: 240 SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFN 277
            +L  L  +SL +NKL+  I       L  ++ + L  N
Sbjct: 125 QDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 22/150 (14%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTI-GLTGNPLDGVLPTS 374
             +  + L  N      P   +   KL  +D+  N  S + P+   GL            
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR----------- 80

Query: 375 IGNLSMSLENIYISNCNIGGSIPQ-LISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQG 432
                 SL ++ +    I   +P+ L   L +L LL L  NK+   + V  F  L  L  
Sbjct: 81  ------SLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNL 132

Query: 433 LYLPFNKLAGSIPDQLCHLARLNTLGLAGN 462
           L L  NKL          L  + T+ LA N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 10/130 (7%)

Query: 104 NISSLNLQG----TIPPQ-LGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQ 157
            I+ + L+      IPP        L  ++LS+N++S ++ P  F  +  L  L    N+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 158 LSGSLSSVTF-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALS 216
           ++  L    F  L S+  + L+++K++  L V+    LH L +L L  N          S
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 217 KCKRLQLLNL 226
             + +Q ++L
Sbjct: 150 PLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 198 KVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLR 256
             + L +N      P A S  K+L+ ++L   ++S  +  +    L  L  + L  NK+ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 257 GEIPHEI-GYLPNLENLVLGFNNLVGVVPAAIF-NMSTVKKIYLLDNSLLGSFSLGIDLS 314
            E+P  +   L +L+ L+L  N +   +    F ++  +  + L DN  L + + G    
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSP 150

Query: 315 LPNVERLNLGLN 326
           L  ++ ++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 456 TLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGP 515
            + L  N      P        LR  DL +N+++ + P  F  L+ +    L  N +   
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-- 93

Query: 516 LSLDIG---NLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLT 572
             L       L  +  + L+ N  +        DL +L  +SL  N L+ +   +F  L 
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 573 EL 574
            +
Sbjct: 153 AI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 18/117 (15%)

Query: 482 DLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIG------NLRVVIGINLSRNN 535
            L  N +  + P  F   K +   DLS+N +     L         +L     + L  N 
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNS---LVLYGNK 91

Query: 536 FSGDIPSTIGD-LKDLQNISLACNGLEGLIPESFGYLTELN---LSFNKLEGEIPRG 588
            + ++P ++ + L  LQ + L  N +  L  ++F  L  LN   L  NKL+  I +G
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKG 146

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 45/205 (21%)

Query: 656 GGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMAL 715
             K   +     +   +    ++   +IG GSFG V++ +L +  EVAIK   Q+     
Sbjct: 21  PNKVIKVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKN 80

Query: 716 KSFEAECEVMKNIRHRNHVK----RISSCSNEDFKAL--------DCLHSTNCSLNIFDK 763
           +    E ++M+ ++H N V       S+   +D   L        + ++        + K
Sbjct: 81  R----ELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRA---SRHYAK 133

Query: 764 LNIMIDVA----------SALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGR 802
           L   + +            +L Y+   HS  + H D+KP+N+            DFG  +
Sbjct: 134 LKQTMPMLLIKLYMYQLLRSLAYI---HSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAK 190

Query: 803 LLTGDRSMIQTETLVTIGYMAPGLL 827
           +L           + +  Y AP L+
Sbjct: 191 ILIAGEPN--VSYICSRYYRAPELI 213

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 46/191 (24%)

Query: 677 FSKENL-----IGVGSFGSVYKGRLHDGIE------VAIKVFHQNCAMALKS-FEAECEV 724
            ++E +     +G GSFG VY+G     ++      VAIK  ++  +M  +  F  E  V
Sbjct: 22  VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV 81

Query: 725 MKNIRHRNHVKRISSCSNED--------------------FKALDCLHSTNCSLNIFDKL 764
           MK     + V+ +   S                        +     +      ++   +
Sbjct: 82  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 141

Query: 765 NIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQT 813
            +  ++A  + YL   ++   +H DL  +N            DFG+ R +   D      
Sbjct: 142 QMAGEIADGMAYL---NANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGG 198

Query: 814 ETLVTIGYMAP 824
           + L+ + +M+P
Sbjct: 199 KGLLPVRWMSP 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 61/276 (22%), Positives = 97/276 (35%), Gaps = 57/276 (20%)

Query: 215 LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
                     NL  K ++ A+    + L  + +I   N+ ++  +   I YLPN+  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 75

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPS 334
             N L                I  L N             L N+  L L  N+      S
Sbjct: 76  NGNKL--------------TDIKPLAN-------------LKNLGWLFLDENKVKDL--S 106

Query: 335 FITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGG 394
            + +  KL  L +  N  S I                   + +L   LE++Y+ N  I  
Sbjct: 107 SLKDLKKLKSLSLEHNGISDING-----------------LVHLP-QLESLYLGNNKI-- 146

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL 454
           +   ++S L+ L  L LE N+++  I      L KLQ LYL  N ++  +   L  L  L
Sbjct: 147 TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNL 202

Query: 455 NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS 490
           + L L   +      +   NL    +       L +
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 15/201 (7%)

Query: 382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLA 441
                +   ++  ++ Q  + L+++  +    + +  S+      L  +  L+L  NKL 
Sbjct: 26  TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT 81

Query: 442 GSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKD 501
             I   L +L  L  L L  NK    + S L +L  L+S  L  N ++ +  +   +L  
Sbjct: 82  -DIKP-LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQ 135

Query: 502 ILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLE 561
           +    L +N +     L    L  +  ++L  N  S DI   +  L  LQN+ L+ N + 
Sbjct: 136 LESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS 191

Query: 562 GLIP-ESFGYLTELNLSFNKL 581
            L        L  L L   + 
Sbjct: 192 DLRALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 15/185 (8%)

Query: 400 ISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
               +  +  +L+   +T    VT   L  +  +    + +  S+   + +L  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 75

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLD 519
            GNK +  I   L NL +L    L  N++  +  S+  +LK +    L  N +     ++
Sbjct: 76  NGNKLT-DI-KPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS---DIN 128

Query: 520 -IGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP-ESFGYLTELNLS 577
            + +L  +  + L  N  + DI + +  L  L  +SL  N +  ++P      L  L LS
Sbjct: 129 GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 578 FNKLE 582
            N + 
Sbjct: 187 KNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 21/231 (9%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
           +  +  ++ +++ ++   +  L ++T L L+ NKL+ DI P +  +  L +L   +N++ 
Sbjct: 48  IDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK 103

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICN--YLHYLKVLFLAKNMFHGQIPLALSK 217
             LSS+  +L  +  + L+ + +S     +I    +L  L+ L+L  N     I   LS+
Sbjct: 104 -DLSSLK-DLKKLKSLSLEHNGIS-----DINGLVHLPQLESLYLGNNKIT-DIT-VLSR 154

Query: 218 CKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN 277
             +L  L+L   ++S  +P  ++ LT L+ + L  N +  ++   +  L NL+ L L   
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQ 210

Query: 278 NLVGVVPAAIFNMSTVKKIYLLDNSLLG--SFSLGIDLSLPNVERLNLGLN 326
             +        N+     +   D SL+     S   D   PNV+       
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 20/264 (7%)

Query: 118 LGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL 177
               +     NL    ++  +  +   ++ +  +  +++ +  S+  +   L +V  + L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQ-YLPNVTKLFL 75

Query: 178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPK 237
           + +KL+   P+     L  L  LFL +N     +  +L   K+L+ L+L    +S     
Sbjct: 76  NGNKLTDIKPL---ANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDING- 129

Query: 238 EISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIY 297
            + +L  L  + L NNK+       +  L  L+ L L  N +  +VP  +  ++ ++ +Y
Sbjct: 130 -LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184

Query: 298 LLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI-- 355
           L  N +     L     L N++ L L          +  +N      +     S      
Sbjct: 185 LSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 356 IPNTIGLTGNPLDGVLPTSIGNLS 379
           I +        +   LP     +S
Sbjct: 242 ISDDGDYEKPNVKWHLPEFTNEVS 265

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 67.8 bits (166), Expect = 6e-12
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 42/183 (22%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQN---CAMALKSFEAECEVMKNIR 729
           ++++  + ++G GSFG V   +    G E A+KV  +         +S   E +++K + 
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84

Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCS---LNIFDKL------------NIMIDVASAL 774
           H N +K       ED      L     +   L  FD++             I+  V S +
Sbjct: 85  HPNIMKLYEFF--EDKGYF-YLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGI 139

Query: 775 EYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLVTIGY 821
            Y+H +    ++H DLKP+N             + DFG+       + M   + + T  Y
Sbjct: 140 TYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKM--KDKIGTAYY 194

Query: 822 MAP 824
           +AP
Sbjct: 195 IAP 197

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 71/431 (16%), Positives = 140/431 (32%), Gaps = 85/431 (19%)

Query: 122 SSLTTLNLSHNKLSGD-IPPSIFTMHKLKFLDFSDNQLS----GSLSSVTFNLSSVLDIR 176
             + +L++   +LS       +  + + + +   D  L+      +SS      ++ ++ 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 177 LDSDKLSGELPVNICNYLHY----LKVLFLAKNMFHGQ----IPLALSKCKRLQLLNL-- 226
           L S++L       +   L      ++ L L      G     +   L     LQ L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 227 ------GFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYL----PNLENLVLGF 276
                 G + L   +   +     L K+ L    L       +  +    P+ + L +  
Sbjct: 123 NLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 277 NNL--VGV---VPAAIFNMSTVKKIYLLDNSL--LGSFSLGIDL-SLPNVERLNLGLNRF 328
           N++   GV         +   ++ + L    +       L   + S  ++  L LG N+ 
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 329 SGT-----IPSFITNASKLVYLDMGTNSF---------SGIIPNT----IGLTGNPL--D 368
                    P  +  +S+L  L +                +        + L GN L  +
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 369 GV--LPTSIGNLSMSLENIYISNCNIGG----SIPQLISNLSNLLLLDLEGNKLTGSIPV 422
           G   L  ++      LE++++ +C+           +++    LL L +  N+L  +   
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA--- 356

Query: 423 TFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS----GSIPSCLGNLTSL 478
                    G+      L   +         L  L LA    S     S+ + L    SL
Sbjct: 357 ---------GVRE----LCQGLGQPGSV---LRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 479 RSPDLGSNRLT 489
           R  DL +N L 
Sbjct: 401 RELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 6e-09
 Identities = 73/425 (17%), Positives = 138/425 (32%), Gaps = 79/425 (18%)

Query: 118 LGNLSSLTTLNLSHNKLSGDIPPSIFTM-----HKLKFLDFSDNQLS----GSLSSVTFN 168
           L    +L  LNL  N+L       +         K++ L   +  L+    G LSS    
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 169 LSSVLDIRLDSDKLSGELPVNICNYLHY----LKVLFLAKNMFHGQ----IPLALSKCKR 220
           L ++ ++ L  + L       +C  L      L+ L L            +   L     
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 221 LQLLNLGFKKLSGAIPKEIS-----NLTILRKISLRNNKLRGE----IPHEIGYLPNLEN 271
            + L +    ++ A  + +      +   L  + L +  +  +    +   +    +L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 272 LVLGFNNL--VGVV---PAAIFNMSTVKKIYLLDNSL--LGSFSLGIDL-SLPNVERLNL 323
           L LG N L  VG+    P  +   S ++ +++ +  +   G   L   L +  +++ L+L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 324 GLNRFSGT-----IPSFITNASKLVYLDMGTNSFS--GIIPNTIGLTGNPLDGVLPTSIG 376
             N            + +    +L  L + + SF+       +  L  N           
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR---------- 341

Query: 377 NLSMSLENIYISNCNIGGSIPQLIS-----NLSNLLLLDLEGNKLT----GSIPVTFGRL 427
                L  + ISN  +  +  + +        S L +L L    ++     S+  T    
Sbjct: 342 ----FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397

Query: 428 QKLQGLYLPFNK--------LAGSIPDQLCHLARLNTLGLAGNKFS----GSIPSCLGNL 475
             L+ L L  N         L  S+    C    L  L L    +S      + +   + 
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGC---LLEQLVLYDIYWSEEMEDRLQALEKDK 454

Query: 476 TSLRS 480
            SLR 
Sbjct: 455 PSLRV 459

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 68/410 (16%), Positives = 128/410 (31%), Gaps = 75/410 (18%)

Query: 245 LRKISLRNNKLRGE-IPHEIGYLPNLENLVLGFNNL----VGVVPAAIFNMSTVKKIYLL 299
           ++ + ++  +L        +  L   + + L    L       + +A+     + ++ L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 300 DNSL--LGSFSLGIDLSLPN--VERLNLGLNRFSGT----IPSFITNASKLVYLDMGTNS 351
            N L  +G   +   L  P+  +++L+L     +G     + S +     L  L +  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 352 FS---------GIIPNTIGLTGNPLDGVLPTSIGNLSM--------SLENIYISNCNIGG 394
                      G++     L    L+    ++     +          + + +SN +I  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 395 S-----IPQLISNLSNLLLLDLEGNKLT----GSIPVTFGRLQKLQGLYLPFNKLAGS-- 443
           +        L  +   L  L LE   +T      +         L+ L L  NKL     
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244

Query: 444 ---IPDQLCHLARLNTLGLAGNKFS----GSIPSCLGNLTSLRSPDLGSNR--------L 488
               P  L   +RL TL +     +    G +   L    SL+   L  N         L
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304

Query: 489 TSVLPSTFWNLKDILFFDLSSNSLDG----PLSLDIGNLRVVIGINLSRNNFSGDIPSTI 544
              L      L+ +    + S S         S  +   R ++ + +S N         +
Sbjct: 305 CETLLEPGCQLESL---WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 545 GD-LKD----LQNISLACNGL--EGLIP-----ESFGYLTELNLSFNKLE 582
              L      L+ + LA   +             +   L EL+LS N L 
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 41/245 (16%)

Query: 378 LSMSLENIYISNCNIG-GSIPQLISNLSNLLLLDLEGNKLT----GSIPVTFGRLQKLQG 432
           +S+ ++++ I    +      +L+  L    ++ L+   LT      I         L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 433 LYLPFNKLAGSIPDQLCHL-----ARLNTLGLAGNKFS----GSIPSCLGNLTSLRSPDL 483
           L L  N+L       +         ++  L L     +    G + S L  L +L+   L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 484 GSNRLT--------SVLPSTFWNLKDILFFDLSSNSLD----GPLSLDIGNLRVVIGINL 531
             N L           L      L+ +    L   SL      PL+  +        + +
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKL---QLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 532 SRNNFSGDIPSTIGD-LKD----LQNISLACNGLEGLIPESFGY-------LTELNLSFN 579
           S N+ +      +   LKD    L+ + L   G+                 L EL L  N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 580 KLEGE 584
           KL   
Sbjct: 238 KLGDV 242

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 51/187 (27%)

Query: 683 IGVGSFGSVYKGRLHDGIE------VAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           +G G+FG V+    H+ +       VA+K   +    A + F+ E E++  ++H++ V+ 
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108

Query: 737 ISSCSNED-------------------------FKALDCLHSTNCSLNIFDKLNIMIDVA 771
              C+                                         L +   L +   VA
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVA 168

Query: 772 SALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQTETLV 817
           + + YL   HF      +H DL  +N            DFG+ R + + D   +   T++
Sbjct: 169 AGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML 222

Query: 818 TIGYMAP 824
            I +M P
Sbjct: 223 PIRWMPP 229

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 65.7 bits (161), Expect = 9e-12
 Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 52/188 (27%)

Query: 683 IGVGSFGSVYKGRLHDG------IEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKR 736
           +G G+FG V+    ++       + VA+K        A K F+ E E++ N++H + VK 
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82

Query: 737 ISSCSNED--------------------------FKALDCLHSTNCSLNIFDKLNIMIDV 770
              C + D                                       L +   L+I   +
Sbjct: 83  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQI 142

Query: 771 ASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQTETL 816
           AS + YL   HF      +H DL  +N            DFG+ R + + D   +   T+
Sbjct: 143 ASGMVYLASQHF------VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTM 196

Query: 817 VTIGYMAP 824
           + I +M P
Sbjct: 197 LPIRWMPP 204

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 43/198 (21%)

Query: 658 KSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVF--HQNCAMA 714
            S       +Q  F           +G GSFG V K +      E A+KV          
Sbjct: 7   HSSGRENLYFQGTFAERYNIVCM--LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKD 64

Query: 715 LKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCS---LNIFDKL------- 764
             +   E E++K + H N +K       ED  +   +     +   L  FD++       
Sbjct: 65  TSTILREVELLKKLDHPNIMKLFEIL--EDSSSF-YIVGELYTGGEL--FDEIIKRKRFS 119

Query: 765 -----NIMIDVASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTG 806
                 I+  V S + Y+H  +   ++H DLKP+N             + DFG+      
Sbjct: 120 EHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176

Query: 807 DRSMIQTETLVTIGYMAP 824
           +  M   + + T  Y+AP
Sbjct: 177 NTKM--KDRIGTAYYIAP 192

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 29/173 (16%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
             SK  ++G G FG V+K      G+++A K+         +  + E  VM  + H N +
Sbjct: 90  TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLI 149

Query: 735 KRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +   +  +++   L           D +   + +L   D +  M  +   + ++H  +  
Sbjct: 150 QLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMY-- 207

Query: 784 PVIHCDLKPKN------------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            ++H DLKP+N            + DFG+ R       +       T  ++AP
Sbjct: 208 -ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL--KVNFGTPEFLAP 257

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 29/175 (16%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            + +     +G G+FG V++      G     K  +    +   + + E  +M  + H  
Sbjct: 50  YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK 109

Query: 733 HVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            +    +  ++    L           D + + +  ++  + +N M      L+++H   
Sbjct: 110 LINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS 169

Query: 782 STPVIHCDLKPKN------------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
              ++H D+KP+N            + DFG+   L  D  +    T  T  + AP
Sbjct: 170 ---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV--KVTTATAEFAAP 219

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 47/183 (25%)

Query: 683 IGVGSFGSVYKGRLHDG------IEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVK 735
           +G G+FG VY+G++         ++VA+K   + C       F  E  ++    H+N V+
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138

Query: 736 RISSCSNE----------------DF-KALDCLHSTNCSLNIFDKLNIMIDVASALEYL- 777
            I                       F +      S   SL + D L++  D+A   +YL 
Sbjct: 139 CIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 198

Query: 778 --HFSHSTPVIHCDLKPKNVF-------------DFGIGRLL-TGDRSMIQTETLVTIGY 821
             HF      IH D+  +N               DFG+ R +            ++ + +
Sbjct: 199 ENHF------IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKW 252

Query: 822 MAP 824
           M P
Sbjct: 253 MPP 255

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 39/183 (21%), Positives = 60/183 (32%), Gaps = 53/183 (28%)

Query: 682 LIGVGSFGSVYKGRLHDGI---EVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVK 735
           ++G G    V+     D     +VA+KV   + A        F  E +    + H   V 
Sbjct: 19  ILGFGGMSEVHLA--RDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIV- 75

Query: 736 RISSCSN-----EDFKALDCLH----------------STNCSLNIFDKLNIMIDVASAL 774
                       E       L                  T   +     + ++ D   AL
Sbjct: 76  ------AVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQAL 129

Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIG---Y 821
            +   SH   +IH D+KP N          V DFGI R +    + + T+T   IG   Y
Sbjct: 130 NF---SHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSV-TQTAAVIGTAQY 185

Query: 822 MAP 824
           ++P
Sbjct: 186 LSP 188

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 48/175 (27%), Positives = 66/175 (37%), Gaps = 31/175 (17%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHR 731
            E F+K   IG GSFG V+KG        VAIK+   +     ++  + E  V+      
Sbjct: 21  EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSP 80

Query: 732 NHVKRISSCSNEDF-----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
              K   S   +              ALD L          D+  I   +   L+ L + 
Sbjct: 81  YVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP-----GPLDETQIATILREILKGLDYL 135

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           HS   IH D+K  NV           DFG+   LT   + I+  T V T  +MAP
Sbjct: 136 HSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNTFVGTPFWMAP 188

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 53/192 (27%)

Query: 680 ENLIGVGSFGSVYKGRLHDG------IEVAIKVFHQNCAMALKS-FEAECEVMKNIRHRN 732
              +G   FG VYKG L           VAIK         L+  F  E  +   ++H N
Sbjct: 14  MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPN 73

Query: 733 HVKRISSCSNED--------------------------FKALDCLHSTNCSLNIFDKLNI 766
            V  +   + +                             + D   +   +L   D +++
Sbjct: 74  VVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHL 133

Query: 767 MIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDRSMIQ 812
           +  +A+ +EYL   H       +H DL  +NV           D G+ R +   D   + 
Sbjct: 134 VAQIAAGMEYLSSHHV------VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLL 187

Query: 813 TETLVTIGYMAP 824
             +L+ I +MAP
Sbjct: 188 GNSLLPIRWMAP 199

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 56/190 (29%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVF--HQNCAMALKSFEAECEVMKNIRH 730
           TE++     +G G+F  V +   +  G E A  +    +  A   +  E E  + + ++H
Sbjct: 10  TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH 69

Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSLNI----------FDKL------------NIMI 768
            N V+   S S E                +          F+ +            + + 
Sbjct: 70  PNIVRLHDSISEEGH------------HYLIFDLVTGGELFEDIVAREYYSEADASHCIQ 117

Query: 769 DVASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTET 815
            +  A+ + H      V+H +LKP+N             + DFG+   + G++       
Sbjct: 118 QILEAVLHCH-QMG--VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWF--G 172

Query: 816 LV-TIGYMAP 824
              T GY++P
Sbjct: 173 FAGTPGYLSP 182

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 52/193 (26%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKV-------------FHQNCAMALKSFE 719
            E + K   +G G++G V   +  +   E AIKV              ++N     +   
Sbjct: 35  GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIY 94

Query: 720 AECEVMKNIRHRNHVKRISSCSNEDFKALDCLH--STNCS-LNIFDKL------------ 764
            E  ++K++ H N +K      ++ +      +  +       +F+++            
Sbjct: 95  NEISLLKSLDHPNIIKLFDVFEDKKY-----FYLVTEFYEGGELFEQIINRHKFDECDAA 149

Query: 765 NIMIDVASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMI 811
           NIM  + S + YLH  +   ++H D+KP+N             + DFG+    + D  + 
Sbjct: 150 NIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKL- 205

Query: 812 QTETLVTIGYMAP 824
             + L T  Y+AP
Sbjct: 206 -RDRLGTAYYIAP 217

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 57/205 (27%)

Query: 658 KSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH--QNCAMA 714
            S       +Q  F           +G GSFG V K +      E A+KV +        
Sbjct: 7   HSSGRENLYFQGTFAERYNIVCM--LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKD 64

Query: 715 LKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNI----------FDKL 764
             +   E E++K + H N +K      +                 I          FD++
Sbjct: 65  TSTILREVELLKKLDHPNIMKLFEILEDSSS------------FYIVGELYTGGELFDEI 112

Query: 765 ------------NIMIDVASALEYLHFSHSTPVIHCDLKPKN-------------VFDFG 799
                        I+  V S + Y+H  +   ++H DLKP+N             + DFG
Sbjct: 113 IKRKRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFG 169

Query: 800 IGRLLTGDRSMIQTETLVTIGYMAP 824
           +      +  M   + + T  Y+AP
Sbjct: 170 LSTCFQQNTKM--KDRIGTAYYIAP 192

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 41/182 (22%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVF--HQNCAMALKSFEAECEVMKNIRH 730
           +E + +   +G G++G V   R     +E AIK+         +      E  V+K + H
Sbjct: 36  SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDH 95

Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCS---LNIFDKL------------NIMIDVASALE 775
            N +K       ED +    L         L  FD++             I+  V S + 
Sbjct: 96  PNIMKLYDFF--EDKRNY-YLVMECYKGGEL--FDEIIHRMKFNEVDAAVIIKQVLSGVT 150

Query: 776 YLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLVTIGYM 822
           YLH  +   ++H DLKP+N             + DFG+  +    + M   E L T  Y+
Sbjct: 151 YLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKM--KERLGTAYYI 205

Query: 823 AP 824
           AP
Sbjct: 206 AP 207

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 41/206 (19%)

Query: 653 SIRGGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKV----- 706
            I GG    L       LF    +  +   IG G F  V +      G + A+K+     
Sbjct: 4   GISGGGGGILDMADDDVLFEDVYELCEV--IGKGPFSVVRRCINRETGQQFAVKIVDVAK 61

Query: 707 FHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTN 755
           F  +  ++ +  + E  +   ++H + V+ + + S++    +             +    
Sbjct: 62  FTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRA 121

Query: 756 CSLNIF---DKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFG 799
            +  ++      + M  +  AL Y H ++   +IH D+KP  V               FG
Sbjct: 122 DAGFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFG 178

Query: 800 IGRLLTGDRSMIQTETLV-TIGYMAP 824
           +   L     +      V T  +MAP
Sbjct: 179 VAIQLGESGLVAG--GRVGTPHFMAP 202

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 53/176 (30%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKS---FEAECEVMKNIRH 730
            ++ +   +G G F   ++          A K+  ++  +          E  + +++ H
Sbjct: 41  RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAH 100

Query: 731 RNHVKRISSCSNEDFKALDCLHSTNC-----------SLNIFDKL------------NIM 767
           ++ V                    +            SL   +                +
Sbjct: 101 QHVVGFH-----------GFFEDNDFVFVVLELCRRRSL--LELHKRRKALTEPEARYYL 147

Query: 768 IDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT 813
             +    +YLH +    VIH DLK  N+F          DFG+   +  D    + 
Sbjct: 148 RQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKV 200

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 38/198 (19%)

Query: 658 KSKTLRRFSYQDLFRAT-EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA- 714
           +S    + S +  +  T E       IG G++GSV K      G  +A+K          
Sbjct: 4   ESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKE 63

Query: 715 LKSFEAECEV-MKNIRHRNHVK---------RISSC-------SNEDFKALDCLHSTNCS 757
            K    + +V M++      V+             C        ++ +K +  +      
Sbjct: 64  QKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIP 123

Query: 758 LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI-GRLLTG 806
             I  K  I +    AL +L  +    +IH D+KP N+           DFGI G+L   
Sbjct: 124 EEILGK--ITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGISGQL--- 176

Query: 807 DRSMIQTETLVTIGYMAP 824
             S+ +T       YMAP
Sbjct: 177 VDSIAKTRDAGCRPYMAP 194

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 55/177 (31%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH----QNCAMALKSFEAECEVMKNIR 729
            ++ +   +G G F   ++          A K+             K    E  + +++ 
Sbjct: 15  RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREK-MSMEISIHRSLA 73

Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNC-----------SLNIFDKL------------NI 766
           H++ V                    +            SL   +                
Sbjct: 74  HQHVVGFH-----------GFFEDNDFVFVVLELCRRRSL--LELHKRRKALTEPEARYY 120

Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT 813
           +  +    +YLH +    VIH DLK  N+F          DFG+   +  D    + 
Sbjct: 121 LRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKV 174

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 48/203 (23%), Positives = 73/203 (35%), Gaps = 45/203 (22%)

Query: 657 GKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMAL 715
             +++L       L      F    L+G G++G VYKGR +  G   AIKV      M +
Sbjct: 6   SPARSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKV------MDV 59

Query: 716 -----KSFEAECEVMKNI-RHRNHVK-----RISSCSNEDFK------------ALDCLH 752
                +  + E  ++K    HRN           +    D +              D + 
Sbjct: 60  TGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIK 119

Query: 753 STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR 802
           +T    N   +  I       L  L   H   VIH D+K +NV           DFG+  
Sbjct: 120 NTKG--NTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSA 177

Query: 803 LLTGDRSMIQTETLV-TIGYMAP 824
            L   R++ +  T + T  +MAP
Sbjct: 178 QLD--RTVGRRNTFIGTPYWMAP 198

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 42/194 (21%)

Query: 663 RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMALKSFEA 720
               +Q        F ++  +G G+FG V+       G+E  IK  +     + ++  EA
Sbjct: 12  ENLYFQGTIDDLFIFKRK--LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEA 69

Query: 721 ECEVMKNIRHRNHVKRISSCSNEDFKAL-------------DCLHSTNCSLNIF---DKL 764
           E EV+K++ H N +K       ED+  +             + + S              
Sbjct: 70  EIEVLKSLDHPNIIKIFEVF--EDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVA 127

Query: 765 NIMIDVASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMI 811
            +M  + +AL Y H  H   V+H DLKP+N             + DFG+  L   D    
Sbjct: 128 ELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS- 183

Query: 812 QTETLV-TIGYMAP 824
                  T  YMAP
Sbjct: 184 --TNAAGTALYMAP 195

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 674 TEKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            + +     +G G+FG V++      G   A K          ++   E + M  +RH  
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT 215

Query: 733 HVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            V    +  +++   +           + +   +  ++  + +  M  V   L ++H ++
Sbjct: 216 LVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN 275

Query: 782 STPVIHCDLKPKN------------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
               +H DLKP+N            + DFG+   L   +S+    T  T  + AP
Sbjct: 276 ---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV--KVTTGTAEFAAP 325

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 8e-11
 Identities = 48/344 (13%), Positives = 95/344 (27%), Gaps = 32/344 (9%)

Query: 1   YLYFLMAHYLFSGIESPYITKLITTSNLLSFHVPLTHCLLLYLVVAVAAASNITTDQQAL 60
           Y  +L+       +              + F  PLT    +  ++ +   + ++ + +  
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 61  LALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGN 120
                       +L A +                          +   +           
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQ---LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347

Query: 121 LSSLTTLNLSHNKLSG------------DIPP--------SIFTMHKLKFLDFSDNQLSG 160
              L    LS  K +             ++ P         I  M  L  L +    L  
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ- 406

Query: 161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKR 220
             S++            D           +      ++VL LA       +   L +   
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLL 464

Query: 221 LQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLV 280
           +  L+L   +L  A+P  ++ L  L  +   +N L   +   +  LP L+ L+L  N L 
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ 521

Query: 281 GV-VPAAIFNMSTVKKIYLLDNSL--LGSFSLGIDLSLPNVERL 321
                  + +   +  + L  NSL         +   LP+V  +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 37/256 (14%), Positives = 80/256 (31%), Gaps = 18/256 (7%)

Query: 218 CKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN 277
              L   +L  +          +     ++  L  ++       +      L    L   
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVE 359

Query: 278 NLVGVVPAAIFNMSTVKKIYL-----LDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTI 332
               V+ + + +   ++++       L   +L   +L   L      +    L       
Sbjct: 360 KST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418

Query: 333 PSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSM--SLENIYISNC 390
            +++ +      L+             + L    L     T + +L     + ++ +S+ 
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-----TVLCHLEQLLLVTHLDLSHN 473

Query: 391 NIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAG-SIPDQLC 449
            +  ++P  ++ L  L +L    N L  ++      L +LQ L L  N+L   +    L 
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 450 HLARLNTLGLAGNKFS 465
              RL  L L GN   
Sbjct: 531 SCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 15/163 (9%)

Query: 397 PQLISNLSNLLLLD--------LEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQL 448
            + +   S L  +D           +K      V       ++ L+L    L  ++   L
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHL 459

Query: 449 CHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLS 508
             L  +  L L+ N+   ++P  L  L  L       N L +V      NL  +    L 
Sbjct: 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLC 516

Query: 509 SNSLDGPLSLD-IGNLRVVIGINLSRNNFSGDIPSTIGDLKDL 550
           +N L    ++  + +   ++ +NL  N+           L ++
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 40/219 (18%), Positives = 68/219 (31%), Gaps = 27/219 (12%)

Query: 397 PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNT 456
            +  +    L   +L   K T  +       ++LQ L         +I   +  L  L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 457 LGLAGNKFSGSIPSCLGNLTSLRSPDLGSNR--LTSVLPSTFWNLKDILFFDLSSNSLDG 514
                  FS      L  +  +R+  L   R               D+    L+   L  
Sbjct: 401 EKETLQYFST-----LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455

Query: 515 PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP-ESFGYLTE 573
              L+   L +V  ++LS N     +P  +  L+ L+ +  + N LE +    +   L E
Sbjct: 456 LCHLE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQE 512

Query: 574 LNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQ 612
           L L  N+L+                    + L   P L 
Sbjct: 513 LLLCNNRLQ---------------QSAAIQPLVSCPRLV 536

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 28/201 (13%), Positives = 60/201 (29%), Gaps = 8/201 (3%)

Query: 384 NIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGS 443
                N  +     ++I   S+     +                ++L    L   K    
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-V 363

Query: 444 IPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDIL 503
           +  +L     L  L         +I   +  L  L          +++          + 
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423

Query: 504 FFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGL 563
                    +  L ++  ++RV+   +L+  + +  +   +  L  + ++ L+ N L  L
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVL---HLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRAL 478

Query: 564 IP--ESFGYLTELNLSFNKLE 582
            P   +   L  L  S N LE
Sbjct: 479 PPALAALRCLEVLQASDNALE 499

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 63.5 bits (155), Expect = 9e-11
 Identities = 38/197 (19%), Positives = 61/197 (30%), Gaps = 41/197 (20%)

Query: 667 YQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIK--VFHQNCAMALKSFEA---- 720
             +L      ++ +  I  GS+G+V  G   +GI VAIK      +    +         
Sbjct: 14  IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLC 73

Query: 721 -----ECEVMKNIRHRNHVK---RISSCSNEDFKAL-------DC-----LHSTNCSLNI 760
                E  ++ +  H N +                L              +H     ++ 
Sbjct: 74  KRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISP 133

Query: 761 FDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM 810
                 M  +   L  LH      V+H DL P N+           DF + R  T D + 
Sbjct: 134 QHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLADNNDITICDFNLAREDTADANK 190

Query: 811 IQTETLVTIGYMAPGLL 827
             T  +    Y AP L+
Sbjct: 191 --THYVTHRWYRAPELV 205

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 59/190 (31%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH----QNCAMALKSFEAECEVMKNIR 729
           E F   NL+G GSF  VY+   +H G+EVAIK+          M  +  + E ++   ++
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQR-VQNEVKIHCQLK 69

Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSLNI------------FDKL------------- 764
           H + +           +  +    +N    +               L             
Sbjct: 70  HPSIL-----------ELYNYFEDSN---YVYLVLEMCHNGEMNRYLKNRVKPFSENEAR 115

Query: 765 NIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE 814
           + M  + + + YLH      ++H DL   N+           DFG+   L        T 
Sbjct: 116 HFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYT- 171

Query: 815 TLVTIGYMAP 824
              T  Y++P
Sbjct: 172 LCGTPNYISP 181

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 54/187 (28%)

Query: 679 KENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKR 736
           +E+++G G+   V     L    E A+K+  +           E E++   + HRN ++ 
Sbjct: 17  QEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLEL 76

Query: 737 ISSCSNEDFKALDCLHSTNCSL--------NIFDKL------------NIMIDVASALEY 776
           I     E F+  D  +     L        +I   +             ++ DVASAL++
Sbjct: 77  I-----EFFEEEDRFY-----LVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDF 126

Query: 777 LHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLT--GDRSMIQTETLVTI-- 819
           LH      + H DLKP+N             + DF +G  +   GD S I T  L+T   
Sbjct: 127 LHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCG 183

Query: 820 --GYMAP 824
              YMAP
Sbjct: 184 SAEYMAP 190

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 53/187 (28%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            + ++ EN IG GS+G V         I  A K   +     +  F+ E E+MK++ H N
Sbjct: 8   NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPN 67

Query: 733 HVKRISSCSNEDFKALDCLHSTNCSLNI----------FDKL------------NIMIDV 770
            ++   +  +               + +          F+++             IM DV
Sbjct: 68  IIRLYETFEDNTD------------IYLVMELCTGGELFERVVHKRVFRESDAARIMKDV 115

Query: 771 ASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLV 817
            SA+ Y H  +   V H DLKP+N             + DFG+       + M     + 
Sbjct: 116 LSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM--RTKVG 170

Query: 818 TIGYMAP 824
           T  Y++P
Sbjct: 171 TPYYVSP 177

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 57/190 (30%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRH 730
           ++ +  +  +G G+F  V +      G+E A K+ +     A   +  E E  + + ++H
Sbjct: 5   SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64

Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSLNI----------FDKL------------NIMI 768
            N V+   S   E F              +          F+ +            + + 
Sbjct: 65  PNIVRLHDSIQEESF------------HYLVFDLVTGGELFEDIVAREFYSEADASHCIQ 112

Query: 769 DVASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTET 815
            +  ++ Y H +    ++H +LKP+N             + DFG+   +    +      
Sbjct: 113 QILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW---HG 166

Query: 816 LV-TIGYMAP 824
              T GY++P
Sbjct: 167 FAGTPGYLSP 176

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 66/208 (31%)

Query: 677 FSKENL-----IGVGSFGSVYKGRLHDGIE------VAIKVFHQNC-AMALKSFEAECEV 724
           + + N+     IG G+FG V++ R    +       VA+K+  +   A     F+ E  +
Sbjct: 44  YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL 103

Query: 725 MKNIRHRNHVKRISSCSNED----------------------------------FKALDC 750
           M    + N VK +  C+                                           
Sbjct: 104 MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARV 163

Query: 751 LHSTNCSLNIFDKLNIMIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------D 797
                  L+  ++L I   VA+ + YL    F      +H DL  +N            D
Sbjct: 164 SSPGPPPLSCAEQLCIARQVAAGMAYLSERKF------VHRDLATRNCLVGENMVVKIAD 217

Query: 798 FGIGR-LLTGDRSMIQTETLVTIGYMAP 824
           FG+ R + + D         + I +M P
Sbjct: 218 FGLSRNIYSADYYKADGNDAIPIRWMPP 245

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 55/207 (26%)

Query: 656 GGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQN--CA 712
           G +      F      + ++ +  +  +G G+F  V +      G+E A K+ +     A
Sbjct: 10  GQQMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA 69

Query: 713 MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNI----------FD 762
              +  E E  + + ++H N V+   S   E F              +          F+
Sbjct: 70  RDFQKLEREARICRKLQHPNIVRLHDSIQEESF------------HYLVFDLVTGGELFE 117

Query: 763 KL------------NIMIDVASALEYLHFSHSTPVIHCDLKPKN-------------VFD 797
            +            + +  +  ++ Y H +    ++H +LKP+N             + D
Sbjct: 118 DIVAREFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLAD 174

Query: 798 FGIGRLLTGDRSMIQTETLVTIGYMAP 824
           FG+   +    +        T GY++P
Sbjct: 175 FGLAIEVNDSEAW--HGFAGTPGYLSP 199

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 53/188 (28%)

Query: 683 IGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEA-----------------ECEVM 725
           +  G F  +      D    A+K + ++     + F                   E +++
Sbjct: 39  LNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 726 KNIRHRNHVKRISSCSNED--------------FKALDCLH----STNCSLNIFDKLNIM 767
            +I++   +      +N D               K  +       +  C + I     I+
Sbjct: 98  TDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCII 157

Query: 768 IDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV 817
             V ++  Y+H   +  + H D+KP N+           DFG    +   +     +   
Sbjct: 158 KSVLNSFSYIHNEKN--ICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKK----IKGSR 211

Query: 818 -TIGYMAP 824
            T  +M P
Sbjct: 212 GTYEFMPP 219

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 54/186 (29%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFE---AECEVMKNIRH 730
           E F     +G G FG+VY  R       +A+KV  +              E E+  ++RH
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 731 RNHVK---------RISSCSNEDFKALDCLHSTNCSLNIFDKL------------NIMID 769
            N ++         R+       +  L+  ++   ++  + +L              + +
Sbjct: 69  PNILRLYGYFHDATRV-------YLILE--YAPLGTV--YRELQKLSKFDEQRTATYITE 117

Query: 770 VASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-T 818
           +A+AL Y H      VIH D+KP+N+           DFG        R       L  T
Sbjct: 118 LANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR----RTDLCGT 170

Query: 819 IGYMAP 824
           + Y+ P
Sbjct: 171 LDYLPP 176

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 49/190 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECE-------VMK 726
           + +  + +IG G+   V          +VAIK       + L+  +   +        M 
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKR------INLEKCQTSMDELLKEIQAMS 68

Query: 727 NIRHRNHVKRISSCSNEDF-----------KALDCLHST----NCSLNIFDKLNIMI--- 768
              H N V   +S   +D              LD +            + D+  I     
Sbjct: 69  QCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILR 128

Query: 769 DVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVT 818
           +V   LEYLH +     IH D+K  N+           DFG+   L     + + +   T
Sbjct: 129 EVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 185

Query: 819 -IG---YMAP 824
            +G   +MAP
Sbjct: 186 FVGTPCWMAP 195

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 40/182 (21%), Positives = 66/182 (36%), Gaps = 46/182 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRN 732
           +   K+  +G GSF    K          A+K+  +       + + E   +K    H N
Sbjct: 11  DLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPN 67

Query: 733 HVKRISSCSNEDFKAL--DCLHSTNCS---LNIFDKL------------NIMIDVASALE 775
            VK      ++    L  +       +   L  F+++             IM  + SA+ 
Sbjct: 68  IVKLHEVFHDQLHTFLVMEL-----LNGGEL--FERIKKKKHFSETEASYIMRKLVSAVS 120

Query: 776 YLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLVTIGYM 822
           ++H      V+H DLKP+N             + DFG  RL   D   ++T    T+ Y 
Sbjct: 121 HMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKT-PCFTLHYA 176

Query: 823 AP 824
           AP
Sbjct: 177 AP 178

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 37/185 (20%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC------AMALKSFEAECE 723
           F++ EK+    L+G GS+G V K R    G  VAIK F ++        +A++    E +
Sbjct: 21  FQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMR----EIK 76

Query: 724 VMKNIRHRNHVKRISSCSNED-----FKALDC-----LHSTNCSLNIFDKLNIMIDVASA 773
           ++K +RH N V  +  C  +      F+ +D      L      L+       +  + + 
Sbjct: 77  LLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIING 136

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTETLVTIGYM 822
           + + H SH+  +IH D+KP+N+           DFG  R L          + + T  Y 
Sbjct: 137 IGFCH-SHN--IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY--DDEVATRWYR 191

Query: 823 APGLL 827
           AP LL
Sbjct: 192 APELL 196

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 47/212 (22%), Positives = 74/212 (34%), Gaps = 59/212 (27%)

Query: 660 KTLRRFSYQDLFRATEKFSKENL---------IGVGSFGSVYKGR-LHDGIEVAIKVFH- 708
              + F + DL    +    + L         +G G+ G V          +VAI++   
Sbjct: 111 SRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISK 170

Query: 709 -------QNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCS---L 758
                     A    + E E E++K + H   +K  +    ED+     +         L
Sbjct: 171 RKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDY----YIVLELMEGGEL 226

Query: 759 NIFDKL------------NIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------- 796
             FDK+                 +  A++YLH +    +IH DLKP+NV           
Sbjct: 227 --FDKVVGNKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLI 281

Query: 797 ---DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              DFG  ++L     M    TL  T  Y+AP
Sbjct: 282 KITDFGHSKILGETSLM---RTLCGTPTYLAP 310

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 56/200 (28%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD--------GIEVAIKVFHQNC-AMALKSFEAECEVM 725
           +K +    +G G FG V                + VA+K+   +     L    +E E+M
Sbjct: 81  DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM 140

Query: 726 KNI-RHRNHVKRISSCSNE----------------DF----------KALDCLHSTNCSL 758
           K I +H+N +  + +C+ +                ++           + D        +
Sbjct: 141 KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 200

Query: 759 NIFDKLNIMIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLL- 804
              D ++    +A  +EYL           IH DL  +NV           DFG+ R + 
Sbjct: 201 TFKDLVSCTYQLARGMEYLASQKC------IHRDLAARNVLVTENNVMKIADFGLARDIN 254

Query: 805 TGDRSMIQTETLVTIGYMAP 824
             D     T   + + +MAP
Sbjct: 255 NIDYYKKTTNGRLPVKWMAP 274

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 50/197 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIE------VAIKVFHQNC-AMALKSFEAECEVMKN 727
            + S    +G G+FG V +   +  I+      VA+K+   +      ++  +E +V+  
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 728 I-RHRNHVKRISSCSNED----------------------------FKALDCLHSTNCSL 758
           +  H N V  + +C+                                 +   +     +L
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL 142

Query: 759 NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGD 807
           ++ D L+    VA  + +L   +    IH DL  +N+           DFG+ R +    
Sbjct: 143 DLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199

Query: 808 RSMIQTETLVTIGYMAP 824
             +++    + + +MAP
Sbjct: 200 NYVVKGNARLPVKWMAP 216

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 402 NLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGL 459
           +L NL  L L  N+L  ++PV  F  L +L  L L  N+L   +P  +   L  L  L +
Sbjct: 62  SLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119

Query: 460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN 510
             NK +  +P  +  LT L    L  N+L S+    F  L  +    L  N
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 17/112 (15%)

Query: 409 LDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKL----AGSIPDQLCHLARLNTLGLAGNKF 464
           L L  N++T   P  F  L  L+ LYL  N+L     G + D    L +L  L L  N+ 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFD---SLTQLTVLDLGTNQL 100

Query: 465 SGSIPS----CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
           +  +PS     L +L  L    +  N+LT  LP     L  +    L  N L
Sbjct: 101 T-VLPSAVFDRLVHLKEL---FMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 31/181 (17%)

Query: 122 SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDK 181
            S TT++    + +  +P  I T    + L   DNQ++     V  +L ++ ++ L S++
Sbjct: 19  CSGTTVDCRSKRHAS-VPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75

Query: 182 LSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLG-FKKLSGAIPKEIS 240
           L   LPV + + L  L VL L  N              +L +L    F +L         
Sbjct: 76  LG-ALPVGVFDSLTQLTVLDLGTN--------------QLTVLPSAVFDRLV-------- 112

Query: 241 NLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLD 300
           +L  L    +  NKL  E+P  I  L +L +L L  N L  +   A   +S++   YL  
Sbjct: 113 HLKEL---FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

Query: 301 N 301
           N
Sbjct: 169 N 169

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 50/197 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD--------GIEVAIKVFHQNC-AMALKSFEAECEVM 725
           +K +    +G G+FG V                + VA+K+   +     L    +E E+M
Sbjct: 35  DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM 94

Query: 726 KNI-RHRNHVKRISSCSNE----------------DF----------KALDCLHSTNCSL 758
           K I +H+N +  + +C+ +                ++           + D        +
Sbjct: 95  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154

Query: 759 NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGD 807
              D ++    +A  +EYL        IH DL  +NV           DFG+ R +   D
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLARDINNID 211

Query: 808 RSMIQTETLVTIGYMAP 824
                T   + + +MAP
Sbjct: 212 YYKKTTNGRLPVKWMAP 228

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 409 LDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGLAGNKFSGS 467
           L L+GN+ T  +P      + L  + L  N+++ ++ +Q   ++ +L TL L+ N+    
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 468 IPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           IP      L SLR   L  N ++ V    F +L  +    + +N L 
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLCH-LA 452
            +P+ +SN  +L L+DL  N+++ ++   +F  + +L  L L +N+L   IP +    L 
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLK 102

Query: 453 RLNTLGLAGNKFSGSIPSCLG---NLTSLRSPDLGSN 486
            L  L L GN  S  +P   G   +L++L    +G+N
Sbjct: 103 SLRLLSLHGNDIS-VVPE--GAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 104 NISSLNLQG----TIPPQLGNLSSLTTLNLSHNKLSGDIPPSIF-TMHKLKFLDFSDNQL 158
           +++ L L G     +P +L N   LT ++LS+N++S  +    F  M +L  L  S N+L
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90

Query: 159 SGSLSSVTFN-LSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKN 205
              +   TF+ L S+  + L  + +S  +P    N L  L  L +  N
Sbjct: 91  R-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 55/200 (27%)

Query: 677 FSKENL-----IGVGSFGSVYKGRLHD--------GIEVAIKVFHQNCAM-ALKSFEAEC 722
             ++ L     +G G+FG V                 +VA+K+   +     L    +E 
Sbjct: 66  LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEM 125

Query: 723 EVMKNI-RHRNHVKRISSCSNED--------------------------FKALDCLHSTN 755
           E+MK I +H+N +  + +C+ +                             + +  H+  
Sbjct: 126 EMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 185

Query: 756 CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL- 804
             L+  D ++    VA  +EYL        IH DL  +NV           DFG+ R + 
Sbjct: 186 EQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLARDIH 242

Query: 805 TGDRSMIQTETLVTIGYMAP 824
             D     T   + + +MAP
Sbjct: 243 HIDYYKKTTNGRLPVKWMAP 262

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 52/194 (26%)

Query: 668 QDLFRATEKFSKE----NLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAEC 722
           Q L R + +F+        IGVGS+    +       +E A+K+  ++        E E 
Sbjct: 11  QQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS---KRDPTE-EI 66

Query: 723 EVM-KNIRHRNHVKRISSCSNEDFKAL--DCLHSTNCS---LNIFDKL------------ 764
           E++ +  +H N +       +  +  +  +           L   DK+            
Sbjct: 67  EILLRYGQHPNIITLKDVYDDGKYVYVVTEL-----MKGGEL--LDKILRQKFFSEREAS 119

Query: 765 NIMIDVASALEYLHFSHSTPVIHCDLKPKN--------------VFDFGIGRLLTGDRSM 810
            ++  +   +EYLH      V+H DLKP N              + DFG  + L  +  +
Sbjct: 120 AVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL 176

Query: 811 IQTETLVTIGYMAP 824
           + T    T  ++AP
Sbjct: 177 LMT-PCYTANFVAP 189

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 59.9 bits (146), Expect = 9e-10
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 30/175 (17%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            EK+     +G G FG V++            K             + E  ++   RHRN
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRN 62

Query: 733 HVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            +    S  + +   +           + ++++   LN  + ++ +  V  AL++LH  +
Sbjct: 63  ILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN 122

Query: 782 STPVIHCDLKPKN------------VFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
              + H D++P+N            + +FG  R L    +           Y AP
Sbjct: 123 ---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF--RLLFTAPEYYAP 172

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 41/246 (16%), Positives = 64/246 (26%), Gaps = 96/246 (39%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAI-----------------------KVF 707
           R    F     +G G FG V++ +   D    AI                       K+ 
Sbjct: 3   RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE 62

Query: 708 HQNCAMALKSFEAECEVMKNIRHRNH-----------------------VKRISSCSNED 744
           H        ++                                      ++R+   S ++
Sbjct: 63  HPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKN 122

Query: 745 FKALDCLHSTNCSLNI-------------------------FDKLNIMIDVASALEYLHF 779
                   S    L I                            L+I I +A A+E+LH 
Sbjct: 123 TVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHS 182

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-----------T 818
                ++H DLKP N+F          DFG+   +  D       T +           T
Sbjct: 183 KG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGT 239

Query: 819 IGYMAP 824
             YM+P
Sbjct: 240 KLYMSP 245

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 59.9 bits (146), Expect = 9e-10
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 60/205 (29%)

Query: 677 FSKENL-----IGVGSFGSVYKGRLHDG------IEVAIKVFHQNC-AMALKSFEAECEV 724
           F ++NL     +G G FG V K              VA+K+  +N     L+   +E  V
Sbjct: 20  FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNV 79

Query: 725 MKNIRHRNHVKRISSCSNED----------------------------------FKALDC 750
           +K + H + +K   +CS +                                     +   
Sbjct: 80  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSL 139

Query: 751 LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI 800
            H    +L + D ++    ++  ++YL       ++H DL  +N+           DFG+
Sbjct: 140 DHPDERALTMGDLISFAWQISQGMQYLAEMK---LVHRDLAARNILVAEGRKMKISDFGL 196

Query: 801 GRLL-TGDRSMIQTETLVTIGYMAP 824
            R +   D  + +++  + + +MA 
Sbjct: 197 SRDVYEEDSYVKRSQGRIPVKWMAI 221

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 36/196 (18%), Positives = 72/196 (36%), Gaps = 51/196 (26%)

Query: 677 FSKENL-----IGVGSFGSVYKGRLHDGIE------VAIKVFHQNC-AMALKSFEAECEV 724
           F + NL     +G G+FG V +       +      VA+K+      A   ++  +E ++
Sbjct: 43  FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 102

Query: 725 MKNI-RHRNHVKRISSCSNED------------------------FKALDCLHSTNCSLN 759
           M ++ +H N V  + +C++                           +        N + +
Sbjct: 103 MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTAS 162

Query: 760 IFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDR 808
             D L+    VA  + +L   +    IH D+  +NV           DFG+ R +     
Sbjct: 163 TRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN 219

Query: 809 SMIQTETLVTIGYMAP 824
            +++    + + +MAP
Sbjct: 220 YIVKGNARLPVKWMAP 235

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 49/196 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD------GIEVAIKVFHQNC-AMALKSFEAECEVMKN 727
           ++      +G G+FG V +              VA+K+  +       ++  +E +++ +
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 86

Query: 728 I-RHRNHVKRISSCSNED---------------------------FKALDCLHSTNCSLN 759
           I  H N V  + +C+                                 +         L 
Sbjct: 87  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 146

Query: 760 IFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL-TGDR 808
           +   +     VA  +E+L        IH DL  +N+           DFG+ R +     
Sbjct: 147 LEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 203

Query: 809 SMIQTETLVTIGYMAP 824
            + + +  + + +MAP
Sbjct: 204 YVRKGDARLPLKWMAP 219

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 10/116 (8%)

Query: 403 LSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGLA 460
           L+ L  L L  N+L  S+P+  F  L +L  LYL  N+L  S+P  +   L +L  L L 
Sbjct: 82  LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139

Query: 461 GNKFSGSIPSCLG---NLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
            N+   SIP+  G    LT+L++  L +N+L SV    F  L  +    L  N  D
Sbjct: 140 TNQLQ-SIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 383 ENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLA 441
           E + + +  +          L+ L  L+L+ N+L  ++    F  L +L  L L  N+LA
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 442 GSIPDQL-CHLARLNTLGLAGNKFSGSIPS----CLGNLTSLRSPDLGSNRLTSVLPSTF 496
            S+P  +  HL +L+ L L GN+   S+PS     L  L  L    L +N+L S+    F
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL---RLNTNQLQSIPAGAF 151

Query: 497 WNLKDILFFDLSSNSL 512
             L ++    LS+N L
Sbjct: 152 DKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 39/216 (18%)

Query: 90  GITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKL 148
           G TCN        ++    +L  ++P   G  +    L+L    L+  +  + F  + KL
Sbjct: 9   GCTCNEGK---KEVDCQGKSLD-SVPS--GIPADTEKLDLQSTGLA-TLSDATFRGLTKL 61

Query: 149 KFLDFSDNQLSGSLSSVTFN-LSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMF 207
            +L+   NQL  +LS+  F+ L+ +  + L +++L+  LP+ + ++L  L  L+L  N  
Sbjct: 62  TWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGN-- 117

Query: 208 HGQIPLALSKCKRLQLLNLG-FKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI-GY 265
                       +L+ L  G F +L+         L  L    L  N+L+  IP      
Sbjct: 118 ------------QLKSLPSGVFDRLT--------KLKEL---RLNTNQLQ-SIPAGAFDK 153

Query: 266 LPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDN 301
           L NL+ L L  N L  V   A   +  ++ I L  N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 52/213 (24%), Positives = 77/213 (36%), Gaps = 50/213 (23%)

Query: 229 KKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIF 288
           K L  ++P  I   T   K+ L++  L          L  L  L L +N L   + A +F
Sbjct: 24  KSLD-SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVF 79

Query: 289 N-MSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDM 347
           + ++ +  + L +N  L S  LG+   L  +++L LG N+            +KL  L +
Sbjct: 80  DDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138

Query: 348 GTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQ-LISNLSNL 406
            TN                                            SIP      L+NL
Sbjct: 139 NTNQLQ-----------------------------------------SIPAGAFDKLTNL 157

Query: 407 LLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFN 438
             L L  N+L  S+P   F RL KLQ + L  N
Sbjct: 158 QTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 457 LGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPL 516
           L L     +    +    LT L   +L  N+L ++    F +L ++    L++N L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA--- 96

Query: 517 SLDIG---NLRVVIGINLSRNNFSGDIPSTIGD-LKDLQNISLACNGLEGLIPESF---G 569
           SL +G   +L  +  + L  N     +PS + D L  L+ + L  N L+ +   +F    
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155

Query: 570 YLTELNLSFNKLEGEIPRG 588
            L  L+LS N+L+  +P G
Sbjct: 156 NLQTLSLSTNQLQS-VPHG 173

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 52/194 (26%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG---IEVAIKVFHQNC-AMALKSFEAECEVMKNI-R 729
                +++IG G+FG V K R+      ++ AIK   +       + F  E EV+  +  
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84

Query: 730 HRNHVKRISSCSNE----------------DF----------KALDCLHSTNCSLNIFDK 763
           H N +  + +C +                 DF           A    +ST  +L+    
Sbjct: 85  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 144

Query: 764 LNIMIDVASALEYL---HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM 810
           L+   DVA  ++YL    F      IH DL  +N+           DFG+ R    +  +
Sbjct: 145 LHFAADVARGMDYLSQKQF------IHRDLAARNILVGENYVAKIADFGLSR--GQEVYV 196

Query: 811 IQTETLVTIGYMAP 824
            +T   + + +MA 
Sbjct: 197 KKTMGRLPVRWMAI 210

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 37/181 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNC------AMALKSFEAECEVMKN 727
           EK+ K   IG GS+G V+K R    G  VAIK F ++        +AL+    E  ++K 
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALR----EIRMLKQ 58

Query: 728 IRHRNHVKRISSCSNED-----FKALDC-----LHSTNCSLNIFDKLNIMIDVASALEYL 777
           ++H N V  +     +      F+  D      L      +      +I      A+ + 
Sbjct: 59  LKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFC 118

Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTETLVTIGYMAPGL 826
           H  H+   IH D+KP+N+           DFG  RLLTG        + + T  Y +P L
Sbjct: 119 H-KHN--CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYY--DDEVATRWYRSPEL 173

Query: 827 L 827
           L
Sbjct: 174 L 174

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 68/198 (34%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH--------QNCAMALKSFEAECEV 724
            +++     +G G+ G V          +VAIK+             A    + E E E+
Sbjct: 9   RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEI 68

Query: 725 MKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNI------------FDKL-------- 764
           +K + H   +K               + +   + +             FDK+        
Sbjct: 69  LKKLNHPCIIK---------------IKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKE 113

Query: 765 ----NIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGD 807
                    +  A++YLH +    +IH DLKP+NV              DFG  ++L   
Sbjct: 114 ATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 170

Query: 808 RSMIQTETLV-TIGYMAP 824
             M    TL  T  Y+AP
Sbjct: 171 SLM---RTLCGTPTYLAP 185

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 55/187 (29%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
           ++ F  E+ +G G+   VY+ +        A+KV  +   +  K    E  V+  + H N
Sbjct: 52  SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKK--TVDKKIVRTEIGVLLRLSHPN 109

Query: 733 HVKRISSCSNEDFKALDCLHSTNCSLNI----------FDKL------------NIMIDV 770
            +K                      +++          FD++            + +  +
Sbjct: 110 IIKLKEIFETPT------------EISLVLELVTGGELFDRIVEKGYYSERDAADAVKQI 157

Query: 771 ASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLV 817
             A+ YLH +    ++H DLKP+N             + DFG+ +++     M       
Sbjct: 158 LEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLM--KTVCG 212

Query: 818 TIGYMAP 824
           T GY AP
Sbjct: 213 TPGYCAP 219

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 36/179 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA-LKSFEAECEV-MKNIRHR 731
           +       +G G++G V K R +  G  +A+K           K    + ++ M+ +   
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66

Query: 732 NHVK---------RISSC------SNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEY 776
             V           +  C      S + F             +I  K  I + +  ALE+
Sbjct: 67  FTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGK--IAVSIVKALEH 124

Query: 777 LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           LH   S  VIH D+KP NV           DFGI   L     + +         YMAP
Sbjct: 125 LHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLV--DDVAKD-IDAGCKPYMAP 178

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 29/173 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMA-LKSFEAECEVMKNIRHRN 732
           + F K + +G G+ G V+K      G+ +A K+ H     A       E +V+       
Sbjct: 33  DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 92

Query: 733 HVKRISSCSNE----------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
            V    +  ++          D  +LD +      +       + I V   L YL   H 
Sbjct: 93  IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK 152

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
             ++H D+KP N+           DFG+   L    SM    + V T  YM+P
Sbjct: 153 --IMHRDVKPSNILVNSRGEIKLCDFGVSGQLI--DSM--ANSFVGTRSYMSP 199

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 40/188 (21%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIR 729
                 ++   +IG GSFG VY+ +L D G  VAIK   Q+     +    E ++M+ + 
Sbjct: 50  RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLD 105

Query: 730 HRNHVK----RISSCSNEDF---------------KALDCLHSTNCSLNIFDKLNIMIDV 770
           H N V+      SS   +D                +          +L +      M  +
Sbjct: 106 HCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL 165

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLVTI 819
             +L Y+   HS  + H D+KP+N+            DFG  + L           + + 
Sbjct: 166 FRSLAYI---HSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPN--VSYICSR 220

Query: 820 GYMAPGLL 827
            Y AP L+
Sbjct: 221 YYRAPELI 228

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 42/192 (21%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR 729
            +  ++F  E + G G+FG+V  G+    G+ VAIK   Q+     +    E ++M+++ 
Sbjct: 19  RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNR----ELQIMQDLA 74

Query: 730 HRNHVKRIS------SCSNEDF-----------------KALDCLHSTNCSLNIFDKLNI 766
             +H   +       +    D                  +     +    +         
Sbjct: 75  VLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVF 134

Query: 767 MIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTET 815
           +  +  ++  LH   S  V H D+KP NV            DFG  + L+          
Sbjct: 135 LFQLIRSIGCLH-LPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPN--VAY 191

Query: 816 LVTIGYMAPGLL 827
           + +  Y AP L+
Sbjct: 192 ICSRYYRAPELI 203

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 56/187 (29%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH----QNCAMALKSFEAECEVMKNIR 729
           + F     +G G FG+VY  R   +   +A+KV      +   +       E E+  ++R
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVE-HQLRREIEIQSHLR 72

Query: 730 HRNHVK---------RISSCSNEDFKALDCLHSTNCSLNIFDKL------------NIMI 768
           H N ++         RI       +  L+   +    L  + +L              M 
Sbjct: 73  HPNILRMYNYFHDRKRI-------YLMLE--FAPRGEL--YKELQKHGRFDEQRSATFME 121

Query: 769 DVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV- 817
           ++A AL Y H      VIH D+KP+N+           DFG        R      T+  
Sbjct: 122 ELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR----RRTMCG 174

Query: 818 TIGYMAP 824
           T+ Y+ P
Sbjct: 175 TLDYLPP 181

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 66/201 (32%)

Query: 672 RATEKFSKE----NLIGVGSFGSVYKGR-LHDGIEVAIKVF---------HQNCAMALKS 717
            +T  F +      ++G G    V +        E A+K+           +      ++
Sbjct: 10  HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREA 69

Query: 718 FEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHSTNCSLNI----------FDKL-- 764
              E ++++ +  H N ++   +     F              +          FD L  
Sbjct: 70  TLKEVDILRKVSGHPNIIQLKDTYETNTF------------FFLVFDLMKKGELFDYLTE 117

Query: 765 ----------NIMIDVASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLL 804
                      IM  +   +  LH  +   ++H DLKP+N          + DFG    L
Sbjct: 118 KVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQL 174

Query: 805 TGDRSMIQTETLV-TIGYMAP 824
                +     +  T  Y+AP
Sbjct: 175 DPGEKL---REVCGTPSYLAP 192

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 20/141 (14%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC- 740
           IG G+FG +  G+ L+    VAIK+              E    K +   + + ++    
Sbjct: 17  IGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA--PQLHLEYRFYKQLGSGDGIPQVYYFG 74

Query: 741 SNEDFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDL 790
               + A+          D     + + ++   L I I + S +EY+H   S  +I+ D+
Sbjct: 75  PCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDV 131

Query: 791 KPKNVFDFGIGRLLTGDRSMI 811
           KP+N   F IGR     + +I
Sbjct: 132 KPEN---FLIGRPGNKTQQVI 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 409 LDLEGNKLTGSIPVT--FGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGLAGNKFS 465
           L L  N+L   I     FGRL  L  L L  N+L   I        + +  L L  NK  
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 466 GSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
             I +     L  L++ +L  N+++ V+P +F +L  +   +L+SN  +
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 402 NLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGL 459
            L +L+ L+L+ N+LT  I    F     +Q L L  NK+   I +++   L +L TL L
Sbjct: 52  RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109

Query: 460 AGNKFSGSIPSCLG---NLTSLRSPDLGSN 486
             N+ S  +    G   +L SL S +L SN
Sbjct: 110 YDNQIS-CVMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 120 NLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTF-NLSSVLDIRL 177
             S +  L L  NK+  +I   +F  +H+LK L+  DNQ+S  +   +F +L+S+  + L
Sbjct: 76  GASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNL 133

Query: 178 DS 179
            S
Sbjct: 134 AS 135

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 57.1 bits (139), Expect = 6e-09
 Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 44/184 (23%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECE----------- 723
           EK+     IG G++G VYK + + G   A+K             E E E           
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIR---------LEKEDEGIPSTTIREIS 52

Query: 724 VMKNIRHRNHVKRISSCSNED-----FKALDC-----LHSTNCSLNIFDKLNIMIDVASA 773
           ++K ++H N VK       +      F+ LD      L      L      + ++ + + 
Sbjct: 53  ILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNG 112

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMA 823
           + Y H      V+H DLKP+N+           DFG+ R   G      T  +VT+ Y A
Sbjct: 113 IAYCH-DRR--VLHRDLKPQNLLINREGELKIADFGLARAF-GIPVRKYTHEIVTLWYRA 168

Query: 824 PGLL 827
           P +L
Sbjct: 169 PDVL 172

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 39/202 (19%)

Query: 658 KSKTLRRFSYQDLFRAT----EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK----VFH 708
           KSK   +F   ++  +T    +++     IG G+ G V           VAIK     F 
Sbjct: 41  KSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF- 99

Query: 709 QNCAMALKSFEAECEVMKNIRHRNHVK----RISSCSNEDFKAL---DCLHSTNCSLNIF 761
           QN   A +++  E  +MK + H+N +          + E+F+ +     L   N    I 
Sbjct: 100 QNQTHAKRAYR-ELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ 158

Query: 762 DKLN------IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT 805
            +L+      ++  +   +++LH   S  +IH DLKP N+           DFG+ R   
Sbjct: 159 MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG 215

Query: 806 GDRSMIQTETLVTIGYMAPGLL 827
               M  T  +VT  Y AP ++
Sbjct: 216 TSFMM--TPYVVTRYYRAPEVI 235

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 48/190 (25%)

Query: 674 TEKFSKENLIGVG--SFGSVYKGR-LHDGIEVAIKVF---HQNCAMALKSFEAECEVMKN 727
              +    +IG G     +V   R    G  V ++       +  M +   + E  V K 
Sbjct: 24  GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEM-VTFLQGELHVSKL 82

Query: 728 IRHRNHVKRISSCSNEDF-----------KALDCLHSTNCSLNIFDKLN------IMIDV 770
             H N V   ++   ++             A D + +        D +N      I+  V
Sbjct: 83  FNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTH-----FMDGMNELAIAYILQGV 137

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD---RSMIQTETLV 817
             AL+Y+H       +H  +K  ++                  +      + ++      
Sbjct: 138 LKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKY 194

Query: 818 TIG---YMAP 824
           ++    +++P
Sbjct: 195 SVKVLPWLSP 204

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 60/194 (30%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH------QNCAMALKSFEAECEVMK 726
            + +     +G G F  V K R    G++ A K             ++ +  E E  ++K
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 727 NIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNI----------FDKL------------ 764
            I+H N +             L  ++     + +          FD L            
Sbjct: 70  EIQHPNVIT------------LHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEAT 117

Query: 765 NIMIDVASALEYLHFSHSTPVIHCDLKPKN--------------VFDFGIGRLLTGDRSM 810
             +  + + + YLH      + H DLKP+N              + DFG+   +      
Sbjct: 118 EFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF 174

Query: 811 IQTETLVTIGYMAP 824
                  T  ++AP
Sbjct: 175 --KNIFGTPEFVAP 186

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 56.4 bits (137), Expect = 9e-09
 Identities = 38/193 (19%), Positives = 58/193 (30%), Gaps = 58/193 (30%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH------QNCAMALKSFEAECEVMK 726
            + +     +G G F  V K R    G E A K             ++ +  E E  +++
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 727 NIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNI---------FDKL------------N 765
            IRH N +       N+    L           I         FD L             
Sbjct: 64  EIRHPNIITLHDIFENKTDVVL-----------ILELVSGGELFDFLAEKESLTEDEATQ 112

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKN--------------VFDFGIGRLLTGDRSMI 811
            +  +   + YLH      + H DLKP+N              + DFGI   +       
Sbjct: 113 FLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEF- 168

Query: 812 QTETLVTIGYMAP 824
                 T  ++AP
Sbjct: 169 -KNIFGTPEFVAP 180

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 41/198 (20%), Positives = 72/198 (36%), Gaps = 49/198 (24%)

Query: 672 RATEKFSKENL-IGVGSFGSVYKGRLHD---GIEVAIKVFHQNCAMALKSFEAECEV--M 725
           R  + F  E   +G G++G VYK +  D     + A+K           S  A  E+  +
Sbjct: 17  RVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI----SMSACREIALL 72

Query: 726 KNIRHRN--HVKRISSCSNE------------DFKALDCLHSTNCSLNIFDKLN------ 765
           + ++H N   ++++     +            D   +   H  + +     +L       
Sbjct: 73  RELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKS 132

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRLLTG-DRSM 810
           ++  +   + YLH +    V+H DLKP N+               D G  RL     + +
Sbjct: 133 LLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL 189

Query: 811 IQ-TETLVTIGYMAPGLL 827
                 +VT  Y AP LL
Sbjct: 190 ADLDPVVVTFWYRAPELL 207

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 46/188 (24%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECE-------- 723
              EK+ K   +G G++G VYK +   G  VA+K             +AE E        
Sbjct: 18  GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIR---------LDAEDEGIPSTAIR 68

Query: 724 ---VMKNIRHRNHVKRISSCSNED-----FKALDC-----LHSTNCSLNIFDKLNIMIDV 770
              ++K + H N V  I    +E      F+ ++      L      L        +  +
Sbjct: 69  EISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQL 128

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTETLVTI 819
              + + H  H   ++H DLKP+N+           DFG+ R      RS   T  +VT+
Sbjct: 129 LRGVAHCH-QHR--ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSY--THEVVTL 183

Query: 820 GYMAPGLL 827
            Y AP +L
Sbjct: 184 WYRAPDVL 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 1e-08
 Identities = 91/599 (15%), Positives = 164/599 (27%), Gaps = 165/599 (27%)

Query: 257 GEIPHEIGY---LP-NLENLVLGFN-NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGI 311
           GE  +   Y   L    +  V  F+   V  +P +I +   +  I +  +++ G+  L  
Sbjct: 12  GEHQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-F 68

Query: 312 DLSLPNVERLNLGLNRFSGTIP----SFITNASKLVYLD--MGTNSFSGIIPNTIGLTGN 365
              L   E     + +F   +      F+ +  K       M T  +            N
Sbjct: 69  WTLLSKQEE---MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDN 123

Query: 366 PL---DGVL-PTSIGNLSMSLENI----YISNCNIGGSIPQLISNLSNLLLLDLEGNKLT 417
            +     V        L  +L  +     +    + GS     + ++  + L     K+ 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVCLS---YKVQ 177

Query: 418 GSIP-----VTFGR-------LQKLQGLYLPFNKLAGSIPDQLCHL--------ARLNTL 457
             +      +           L+ LQ L    +    S  D   ++        A L  L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 458 GLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLS 517
            L    +     +CL  L  L   ++              N K    F+LS         
Sbjct: 238 -LKSKPY----ENCL--LV-LL--NV-------------QNAKAWNAFNLSC-------- 266

Query: 518 LDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP-ESFGYLTE-LN 575
                 ++++    +R     D  S         +ISL  +    L P E    L + L+
Sbjct: 267 ------KILL---TTRFKQVTDFLSA----ATTTHISLD-HHSMTLTPDEVKSLLLKYLD 312

Query: 576 LSFNKLEGEIPRGGPFA-NFTAKSFMGNEKLCGLPNLQFPKCKR--RTRRKS-------- 624
                L  E+    P   +  A+S    + L    N +   C +       S        
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 625 KKKMLLLVIVLPLSTALIIAVPLALKYKSIRGGKSKTLRRF----SYQDLFRATEKFSKE 680
            +KM   + V P S      +P            +  L          D+     K  K 
Sbjct: 371 YRKMFDRLSVFPPSA----HIP------------TILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
           +L+      S     +                + LK    + E    + HR+ V      
Sbjct: 415 SLVEKQPKESTI--SIPS------------IYLELK---VKLENEYAL-HRSIV------ 450

Query: 741 SNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFG 799
             + +       S +      D+        S + + H  +        L      DF 
Sbjct: 451 --DHYNIPKTFDSDDLIPPYLDQY-----FYSHIGH-HLKNIEHPERMTLFRMVFLDFR 501

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 102/602 (16%), Positives = 170/602 (28%), Gaps = 208/602 (34%)

Query: 3   Y-FLMAHYLF-----SGIESPYIT---KLITTSNLLS-FHVPLTHCLLLYLVVAVAAASN 52
           Y FLM+         S +   YI    +L   + + + ++V      L            
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----------K 139

Query: 53  ITTDQQALLALKAHISYDPTNL------------LAQNSTSNTSVCNWIGITCNVNSHRV 100
           +   +QALL L+        N+            +A        VC    + C ++   +
Sbjct: 140 L---RQALLELRPA-----KNVLIDGVLGSGKTWVA------LDVCLSYKVQCKMDFK-I 184

Query: 101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIF--TMHKLKFLDFSDNQL 158
             LN+ + N   T+   L  L      N +                  +L+ L       
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPY 243

Query: 159 SGSL--------SSV--TFNLSS-VL----DIRLDSDKLSGELPVNICNYLHYLKVL--- 200
              L        +     FNLS  +L      ++ +D LS     +I    H+   L   
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHIS-LDHHSMTLTPD 301

Query: 201 ----FLAK--NM--------FHGQIPLALSKCKRL---------QLLNLGFKKLSGAI-- 235
                L K  +              P  LS                 ++   KL+  I  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 236 ------PKEIS----NLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPA 285
                 P E       L++       +      IP  +        L L + +++     
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPP----SAH----IPTIL--------LSLIWFDVIKSDV- 404

Query: 286 AIFNMSTVKKIYLLDNSLL------GSFSL-GIDLSLPNVERLNLG-LNRFSGTIPSFIT 337
               M  V K  L   SL+       + S+  I L L  V+  N   L+R      S + 
Sbjct: 405 ----MVVVNK--LHKYSLVEKQPKESTISIPSIYLEL-KVKLENEYALHR------SIVD 451

Query: 338 NASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIY-ISNCNIGGSI 396
           + +     D               L    LD    + IG         + + N      +
Sbjct: 452 HYNIPKTFDSD------------DLIPPYLDQYFYSHIG---------HHLKNIEHPERM 490

Query: 397 PQLISNLSNLLLLDLE--GNKL---------TGSIPVTFGRLQKLQGLYLPFNKLAGSIP 445
                 L  ++ LD      K+         +GSI  T  +L+     Y P+      I 
Sbjct: 491 -----TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----YKPY------IC 535

Query: 446 DQLCHLARL-NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILF 504
           D      RL N +      F   +P    NL  + S        T +L        + +F
Sbjct: 536 DNDPKYERLVNAIL----DF---LPKIEENL--ICSKY------TDLLRIALMAEDEAIF 580

Query: 505 FD 506
            +
Sbjct: 581 EE 582

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 58/193 (30%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH------QNCAMALKSFEAECEVMK 726
            + +     +G G F  V K R    G+E A K             +  +  E E  +++
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR 70

Query: 727 NIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNI---------FDKL------------N 765
            + H N +       N     L           I         FD L            +
Sbjct: 71  QVLHPNIITLHDVYENRTDVVL-----------ILELVSGGELFDFLAQKESLSEEEATS 119

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKN--------------VFDFGIGRLLTGDRSMI 811
            +  +   + YLH      + H DLKP+N              + DFG+   +       
Sbjct: 120 FIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEF- 175

Query: 812 QTETLVTIGYMAP 824
                 T  ++AP
Sbjct: 176 -KNIFGTPEFVAP 187

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 409 LDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGLAGNKFSGS 467
           L+LE NKL       F +L +L  L L  N++  S+PD +   L +L  L L  NK   S
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-S 90

Query: 468 IPSCLG---NLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN 510
           +P+  G    LT L+   L +N+L SV    F  L  +    L +N
Sbjct: 91  LPN--GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 403 LSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGLA 460
           L+ L  L L  N++  S+P   F +L KL  LYL  NKL  S+P+ +   L +L  L L 
Sbjct: 51  LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108

Query: 461 GNKFSGSIPS-CLGNLTSLRSPDLGSN 486
            N+   S+P      LTSL+   L +N
Sbjct: 109 TNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 31/175 (17%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA-LKSFEAECEV-MKNIRHR 731
                   +G G+ G V+K R    G  +A+K   ++      K    + +V +K+    
Sbjct: 25  NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCP 84

Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDKL-----------NIMIDVASALEYLHFS 780
             V+   +           +           K             + + +  AL YL   
Sbjct: 85  YIVQCFGTFITNT-DVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEK 143

Query: 781 HSTPVIHCDLKPKNVF----------DFGI-GRLLTGDRSMIQTETLVTIGYMAP 824
           H   VIH D+KP N+           DFGI GRL        +  +     YMAP
Sbjct: 144 HG--VIHRDVKPSNILLDERGQIKLCDFGISGRL---VDDKAKDRSAGCAAYMAP 193

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 64/338 (18%), Positives = 103/338 (30%), Gaps = 87/338 (25%)

Query: 118 LGNLSSLTTLNLSHNKLSGD----IPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVL 173
           L    S+  + LS N +  +    +  +I +   L+  +FSD         +   L    
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-- 85

Query: 174 DIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMF--HGQIPLA--LSKCKRLQLLNL--- 226
                   L   L          L  + L+ N F    Q PL   LSK   L+ L L   
Sbjct: 86  --------LLQALLKC-----PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 227 -----GFKKLSGAIP-----KEISNLTILRKISLRNNKLRGE----IPHEIGYLPNLENL 272
                   K++ A+      K+  N   LR I    N+L                 L  +
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 273 VLGFNNL--VGVVPA---AIFNMSTVKKIYLLDNSL--LGSFSLGIDL-SLPNVERLNLG 324
            +  N +   G+       +     +K + L DN+   LGS +L I L S PN+  L L 
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252

Query: 325 LNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLEN 384
               S                  G  +      +      N                L+ 
Sbjct: 253 DCLLS----------------ARGAAAVV----DAFSKLENI--------------GLQT 278

Query: 385 IYISNCNIGGS-----IPQLISNLSNLLLLDLEGNKLT 417
           + +    I           +   + +LL L+L GN+ +
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 60/348 (17%), Positives = 106/348 (30%), Gaps = 73/348 (20%)

Query: 269 LENLVLGFNNL----VGVVPAAIFNMSTVKKIYLLDNSL--LGSFSLGIDL-SLPNVERL 321
           +E   L  + +       V A +    +VK+I L  N++    +  L  ++ S  ++E  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 322 NLG---LNRFSGTIP-------SFITNASKLVYLDMGTNSFS--GIIPNTIGLTGNPLDG 369
                   R    IP         +    KL  + +  N+F      P    L+ +    
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT--- 122

Query: 370 VLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQK 429
                       LE++Y+ N  +G   PQ  + ++  L       K   +          
Sbjct: 123 -----------PLEHLYLHNNGLG---PQAGAKIARALQELAVNKKAKNA--------PP 160

Query: 430 LQGLYLPFNKL----AGSIPDQLCHLARLNTLGLAGNKF-----SGSIPSCLGNLTSLRS 480
           L+ +    N+L                 L+T+ +  N          +   L     L+ 
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 481 PDLGSNRLT----SVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNF 536
            DL  N  T    S L     +  ++    L+   L        G   VV   +   N  
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS-----ARGAAAVVDAFSKLEN-- 273

Query: 537 SGDIPSTIGDLKDLQNISLACNGLEGL---IPESFGYLTELNLSFNKL 581
                  +  L  LQ   +  + +  L   I E    L  L L+ N+ 
Sbjct: 274 -----IGLQTL-RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 60/205 (29%)

Query: 677 FSKENL-----IGVGSFGSVYKGRLHDG------IEVAIKVFHQNC-AMALKSFEAECEV 724
           F +ENL     +G G+FG V     +        I+VA+K+  +   +   ++  +E ++
Sbjct: 42  FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKM 101

Query: 725 MKNI-RHRNHVKRISSCSNED---------------------------------FKALDC 750
           M  +  H N V  + +C+                                     +    
Sbjct: 102 MTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLE 161

Query: 751 LHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI 800
                  L   D L     VA  +E+L F      +H DL  +NV           DFG+
Sbjct: 162 EEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGL 218

Query: 801 GRLL-TGDRSMIQTETLVTIGYMAP 824
            R + +    +++    + + +MAP
Sbjct: 219 ARDIMSDSNYVVRGNARLPVKWMAP 243

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 30/199 (15%)

Query: 655 RGGKSKTLRRFSYQD-LFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK----VFH 708
           R  +          D  F   +++     IG G+ G V           VAIK     F 
Sbjct: 4   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF- 62

Query: 709 QNCAMALKSFEAECEVMKNIRHRNHVK----RISSCSNEDFKAL-DCLHSTNCSLNIFDK 763
           QN   A +++  E  +MK + H+N +          S E+F+ +   +   + +L    +
Sbjct: 63  QNQTHAKRAYR-ELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ 121

Query: 764 LNIMIDVASALEY-----LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR 808
           + +  +  S L Y     +   HS  +IH DLKP N+           DFG+ R      
Sbjct: 122 MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF 181

Query: 809 SMIQTETLVTIGYMAPGLL 827
            M  T  +VT  Y AP ++
Sbjct: 182 MM--TPYVVTRYYRAPEVI 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 35/188 (18%), Positives = 75/188 (39%), Gaps = 20/188 (10%)

Query: 118 LGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL 177
              L++    NL    ++ D+      +  ++  +  ++ +  SL+ +    +++ ++ L
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SLAGMQ-FFTNLKELHL 70

Query: 178 DSDKLSGELPVNICN--YLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAI 235
             +++S     ++     L  L+ L + +N       +  +   RL L N   +      
Sbjct: 71  SHNQIS-----DLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDS-- 123

Query: 236 PKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKK 295
              + +L  L  +S+RNNKL+  I   +G+L  LE L L  N +       +  +  V  
Sbjct: 124 ---LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 296 IYLLDNSL 303
           I L     
Sbjct: 177 IDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 34/227 (14%)

Query: 215 LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
                     NLG + ++  +      L+ ++  +  N+ ++  +   + +  NL+ L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHL 70

Query: 275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGID-LSLPNVERLNLGLNRFSGTIP 333
             N +  + P  + +++ ++++ +  N L       ++ +    + RL L  N    T  
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELRDT-- 121

Query: 334 SFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIG 393
             + +   L  L +  N    I                   +G LS  LE + +    I 
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSI-----------------VMLGFLS-KLEVLDLHGNEIT 163

Query: 394 GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKL 440
            +   L + L  +  +DL G K           L     +  P  + 
Sbjct: 164 -NTGGL-TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 16/213 (7%)

Query: 373 TSIGNLSM--SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKL 430
           T + +      ++N    N NI       +   +NL  L L  N+++  +      L KL
Sbjct: 32  TDLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS-DLS-PLKDLTKL 87

Query: 431 QGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS 490
           + L +  N+L          L+RL    L  N+        L +L +L    + +N+L S
Sbjct: 88  EELSVNRNRLKNLNGIPSACLSRLF---LDNNELRD--TDSLIHLKNLEILSIRNNKLKS 142

Query: 491 VLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDL 550
           +       L  +   DL  N +     L    L+ V  I+L+      +      +L   
Sbjct: 143 I--VMLGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

Query: 551 QNIS-LACNGLEGLIPESFGYLTELNLSFNKLE 582
             +       +      + G   +  + +    
Sbjct: 199 NTVKDPDGRWISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 38/205 (18%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
           V   N  + N+Q ++   +   ++L  L+LSHN++S D+ P +  + KL+ L  + N+L 
Sbjct: 43  VQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK 98

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCK 219
                                 L+G            L  LFL  N    +   +L   K
Sbjct: 99  ---------------------NLNGIPSAC-------LSRLFLDNNEL--RDTDSLIHLK 128

Query: 220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNL 279
            L++L++   KL   +   +  L+ L  + L  N++       +  L  +  + L     
Sbjct: 129 NLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184

Query: 280 VGVVPAAIFNMSTVKKIYLLDNSLL 304
           V         +     +   D   +
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWI 209

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 55.2 bits (134), Expect = 3e-08
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 47/186 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECE---------- 723
           +K+ K   IG G++G+V+K +       VA+K             + + E          
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVR---------LDDDDEGVPSSALREI 52

Query: 724 -VMKNIRHRNHVKRISSCSNED-----FKALDC-----LHSTNCSLNIFDKLNIMIDVAS 772
            ++K ++H+N V+      ++      F+  D        S N  L+     + +  +  
Sbjct: 53  CLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLK 112

Query: 773 ALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTETLVTIGY 821
            L + H S +  V+H DLKP+N+           +FG+ R      R    +  +VT+ Y
Sbjct: 113 GLGFCH-SRN--VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY--SAEVVTLWY 167

Query: 822 MAPGLL 827
             P +L
Sbjct: 168 RPPDVL 173

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 32/194 (16%)

Query: 409 LDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLA--GSIPDQLCHLARLNTLGLAGNKFSG 466
            +L+   +T     T   L  +  +    + +     I     +L  +  L L GNK   
Sbjct: 24  ANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSVQGIQ----YLPNVRYLALGGNKLH- 76

Query: 467 SIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL--------DGPLSL 518
            I + L  LT+L    L  N+L S+    F  L ++    L  N L        D   +L
Sbjct: 77  DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135

Query: 519 DIGNLRVVIGINLSRNNFSGDIPSTIGD-LKDLQNISLACNGLEGLIPESF---GYLTEL 574
                     +NL+ N     +P  + D L +L  + L+ N L+ L    F     L +L
Sbjct: 136 TY--------LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

Query: 575 NLSFNKLEGEIPRG 588
            L  N+L+  +P G
Sbjct: 187 RLYQNQLKS-VPDG 199

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 16/201 (7%)

Query: 319 ERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI--IPNTIGLTGNPLDGVLPTSIG 376
            + NL     +    +     + +  +    +    +  I     +    L G     I 
Sbjct: 22  IKANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS 79

Query: 377 ---NLSMSLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQ 431
               L+ +L  + ++  N   S+P  +   L+NL  L L  N+L  S+P   F +L  L 
Sbjct: 80  ALKELT-NLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT 136

Query: 432 GLYLPFNKLAGSIPDQLC-HLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLT 489
            L L  N+L  S+P  +   L  L  L L+ N+   S+P      LT L+   L  N+L 
Sbjct: 137 YLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 490 SVLPSTFWNLKDILFFDLSSN 510
           SV    F  L  + +  L  N
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 33/221 (14%)

Query: 229 KKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIF 288
                  P +    T   K +L+   +  +   +   L +++ ++   +++  V    I 
Sbjct: 8   PIKQ-IFPDDAFAET--IKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSV--QGIQ 60

Query: 289 NMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA-SKLVYLDM 347
            +  V+ + L  N L     +     L N+  L L  N+   ++P+ + +  + L  L +
Sbjct: 61  YLPNVRYLALGGNKLH---DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVL 116

Query: 348 GTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI-SNLSNL 406
             N                    LP  + +   +L  + +++ N   S+P+ +   L+NL
Sbjct: 117 VENQLQ----------------SLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNL 159

Query: 407 LLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPD 446
             LDL  N+L  S+P   F +L +L+ L L  N+L  S+PD
Sbjct: 160 TELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 32/162 (19%)

Query: 120 NLSSLTTLNLSHNKLSGDIPPSIF-TMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD 178
            L++LT L L+ N+L   +P  +F  +  LK L   +NQL                    
Sbjct: 83  ELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ------------------- 122

Query: 179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKE 238
                  LP  + + L  L  L LA N           K   L  L+L + +L  ++P+ 
Sbjct: 123 ------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175

Query: 239 I-SNLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFNN 278
           +   LT L+ + L  N+L+  +P  +   L +L+ + L  +N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWL-HDN 215

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 438 NKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTF 496
              A      L     L  L +   +    +    L  L  LR+  +  + L  V P  F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 497 WNLKDILFFDLSSNSL 512
                +   +LS N+L
Sbjct: 77  HFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIP-VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLAR 453
                +    NL  L +E  +    +       L +L+ L +  + L    PD      R
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 454 LNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLT 489
           L+ L L+ N    S+        SL+   L  N L 
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 2/101 (1%)

Query: 414 NKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQ-LCHLARLNTLGLAGNKFSGSIPSCL 472
                         + L  LY+   +    +  + L  L  L  L +  +      P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 473 GNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
                L   +L  N L S+   T   L  +    LS N L 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 372 PTSIGNLSMSLENIYISNCNIGGSIP-QLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQK 429
              +     +L  +YI N      +  + +  L  L  L +  + L   +    F    +
Sbjct: 24  LHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 430 LQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKF 464
           L  L L FN L  S+  +      L  L L+GN  
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 113 TIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTF-NLS 170
                L    +LT L + + +    +       + +L+ L    + L   ++   F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 171 SVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFH 208
            +  + L  + L   L       L  L+ L L+ N  H
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 20/132 (15%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC- 740
           IG GSFG +Y G  +  G EVAIK+              E ++ K ++    +  I  C 
Sbjct: 17  IGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCG 74

Query: 741 SNEDFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDL 790
           +  D+  +          D  +  +   ++   L +   + S +EY+H   S   IH D+
Sbjct: 75  AEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDV 131

Query: 791 KPKNVFDFGIGR 802
           KP N   F +G 
Sbjct: 132 KPDN---FLMGL 140

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 58/193 (30%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH------QNCAMALKSFEAECEVMK 726
            + +     +G G F  V K R    G+E A K             ++ +  E E  +++
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILR 70

Query: 727 NIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNI---------FDKL------------N 765
            + H N +       N     L           I         FD L            +
Sbjct: 71  QVLHHNVITLHDVYENRTDVVL-----------ILELVSGGELFDFLAQKESLSEEEATS 119

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKN--------------VFDFGIGRLLTGDRSMI 811
            +  +   + YLH      + H DLKP+N              + DFG+   +       
Sbjct: 120 FIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEF- 175

Query: 812 QTETLVTIGYMAP 824
                 T  ++AP
Sbjct: 176 -KNIFGTPEFVAP 187

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 61/186 (32%)

Query: 680 ENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRI 737
             ++G+G  G V +        + A+K+              E E+     +  + V+ +
Sbjct: 67  SQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIV 121

Query: 738 SSCSNEDFKALD-CLHSTNCSLNI----------FDKL--------------NIMIDVAS 772
                E+  A   CL        I          F ++               IM  +  
Sbjct: 122 DVY--ENLYAGRKCLL-------IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGE 172

Query: 773 ALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLV-T 818
           A++YLH  +   + H D+KP+N             + DFG  +  T   S+    T   T
Sbjct: 173 AIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL---TTPCYT 226

Query: 819 IGYMAP 824
             Y+AP
Sbjct: 227 PYYVAP 232

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 31/183 (16%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK----VFHQNCAMALKSFEAECEV 724
            +   + +     +G G++GSV        G +VAIK     F Q+   A +++  E  +
Sbjct: 19  AWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF-QSEIFAKRAYR-ELLL 76

Query: 725 MKNIRHRNHVK----RISSCSNEDFKALDC-LHSTNCSLNIFDKLNIMIDVASALEY--- 776
           +K+++H N +        + S  +F      +      L     L    +    L Y   
Sbjct: 77  LKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQML 136

Query: 777 --LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
             L + HS  V+H DLKP N+           DFG+ R    D  M  T  +VT  Y AP
Sbjct: 137 KGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLAR--HADAEM--TGYVVTRWYRAP 192

Query: 825 GLL 827
            ++
Sbjct: 193 EVI 195

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 59/188 (31%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVM-KNIRHRNH 733
           + SK+ L G+G  G V +      G + A+K+ + +          E +   +     + 
Sbjct: 31  QLSKQVL-GLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHI 84

Query: 734 VKRISSCSNEDFKALDCLHSTNCSLNIFDKL-----------------------NIMIDV 770
           V  +     + ++  +  H   C L I + +                        IM D+
Sbjct: 85  VCIL-----DVYE--NMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDI 137

Query: 771 ASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTGDRSMIQTETLV 817
            +A+++LH  +   + H D+KP+N             + DFG  +  T +      +T  
Sbjct: 138 GTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQN----ALQTPC 190

Query: 818 -TIGYMAP 824
            T  Y+AP
Sbjct: 191 YTPYYVAP 198

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 51/187 (27%), Positives = 73/187 (39%), Gaps = 48/187 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECE---------- 723
           E F K   IG G++G VYK R    G  VA+K             + E E          
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR---------LDTETEGVPSTAIREI 53

Query: 724 -VMKNIRHRNHVKRISSCSNED-----FKALDC-LHS--TNCSLNIFDKLNI---MIDVA 771
            ++K + H N VK +     E+     F+ L   L       +L       I   +  + 
Sbjct: 54  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLL 113

Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTETLVTIG 820
             L + H SH   V+H DLKP+N+           DFG+ R      R+   T  +VT+ 
Sbjct: 114 QGLAFCH-SHR--VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY--THEVVTLW 168

Query: 821 YMAPGLL 827
           Y AP +L
Sbjct: 169 YRAPEIL 175

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 40/211 (18%), Positives = 69/211 (32%), Gaps = 63/211 (29%)

Query: 657 GKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVF-------- 707
           G    L  ++    F           IG G    V +      G E A+K+         
Sbjct: 78  GPEDELPDWAAAKEFYQKYDPKDV--IGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLS 135

Query: 708 HQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALDCLHSTNCSLNI------ 760
            +      ++   E  +++ +  H + +  I S  +  F            + +      
Sbjct: 136 PEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSF------------MFLVFDLMR 183

Query: 761 ----FDKL------------NIMIDVASALEYLHFSHSTPVIHCDLKPKN---------- 794
               FD L            +IM  +  A+ +LH ++   ++H DLKP+N          
Sbjct: 184 KGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIR 240

Query: 795 VFDFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           + DFG    L     +     L  T GY+AP
Sbjct: 241 LSDFGFSCHLEPGEKL---RELCGTPGYLAP 268

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 44/183 (24%), Positives = 69/183 (37%), Gaps = 42/183 (22%)

Query: 677 FSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFE---AECEVMKNIRHRN 732
           F    ++G GSF +V   R      E AIK+  +   +          E +VM  + H  
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 91

Query: 733 HVKRISSCSNED--FKALDCL-------HSTNCSLNIFDKLNIMIDVA--------SALE 775
            VK   +  +++  +  L          +        FD                 SALE
Sbjct: 92  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFD-----ETCTRFYTAEIVSALE 144

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
           YLH      +IH DLKP+N+           DFG  ++L+ +    +  + V T  Y++P
Sbjct: 145 YLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 201

Query: 825 GLL 827
            LL
Sbjct: 202 ELL 204

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 48/194 (24%)

Query: 669 DLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECE---- 723
           D+    +++ K + +G G F +VYK R  +    VAIK         L       +    
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIK------LGHRSEAKDGINR 57

Query: 724 -------VMKNIRHRNHVKRISSCSNE------------DFKALDCLHSTNCSLNIFDKL 764
                  +++ + H N +  + +  ++            D + +  +   +  L      
Sbjct: 58  TALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVI--IKDNSLVLTPSHIK 115

Query: 765 NIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQT 813
             M+     LEYLH  H   ++H DLKP N+           DFG+ +     +R+   T
Sbjct: 116 AYMLMTLQGLEYLH-QHW--ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAY--T 170

Query: 814 ETLVTIGYMAPGLL 827
             +VT  Y AP LL
Sbjct: 171 HQVVTRWYRAPELL 184

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 43/195 (22%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK--VFHQNCAMALKSFEAECEVMKN 727
           F    ++     +G G  G V+          VAIK  V   +      +   E ++++ 
Sbjct: 7   FDLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVL-TDPQSVKHALR-EIKIIRR 64

Query: 728 IRHRNHVK------------RISSCSNEDFKAL-------DC-LHSTNCSLNIFD--KLN 765
           + H N VK                 S  +  ++       +  L +      + +     
Sbjct: 65  LDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARL 124

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQ-- 812
            M  +   L+Y+H   S  V+H DLKP N+F           DFG+ R++    S     
Sbjct: 125 FMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHL 181

Query: 813 TETLVTIGYMAPGLL 827
           +E LVT  Y +P LL
Sbjct: 182 SEGLVTKWYRSPRLL 196

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 397 PQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARL 454
             +   L++L  L L GNKL  S+P   F +L  L  L L  N+L  S+P+ +   L +L
Sbjct: 45  NGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQL 102

Query: 455 NTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN 510
             L L  N+   S+P      LT L+   L  N+L SV    F  L  + +  L  N
Sbjct: 103 KELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 409 LDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSI 468
           LDLE N L       F  L  L  LYL  NKL          L  L  L L+ N+   S+
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 469 PS----CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL 512
           P+     L  L  L    L +N+L S+    F  L  +    L  N L
Sbjct: 92  PNGVFDKLTQLKEL---ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 32/182 (17%)

Query: 122 SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDK 181
            S TT+       +  +P  I    +  +LD   N L    + V   L+S+  + L  +K
Sbjct: 7   CSGTTVECYSQGRTS-VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK 63

Query: 182 LSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLG-FKKLSGAIPKEIS 240
           L   LP  + N L  L  L L+ N              +LQ L  G F KL+        
Sbjct: 64  LQ-SLPNGVFNKLTSLTYLNLSTN--------------QLQSLPNGVFDKLT-------- 100

Query: 241 NLTILRKISLRNNKLRGEIPHEI-GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLL 299
            L  L   +L  N+L+  +P  +   L  L++L L  N L  V       +++++ I+L 
Sbjct: 101 QLKEL---ALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156

Query: 300 DN 301
           DN
Sbjct: 157 DN 158

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC- 740
           IG GSFG +++G  L +  +VAIK   +           E    K +     +  +    
Sbjct: 18  IGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA--PQLRDEYRTYKLLAGCTGIPNVYYFG 75

Query: 741 SNEDFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDL 790
                  L          D L       ++         + + ++ +H      +++ D+
Sbjct: 76  QEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDI 132

Query: 791 KPKNVFDFGIGRLLTGDRSMI 811
           KP N   F IGR  + + +MI
Sbjct: 133 KPDN---FLIGRPNSKNANMI 150

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 41/182 (22%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKV--------FHQNCAMALKSFEAECEVMK 726
           K+S  + +G G+FG V+         EV +K                 L     E  ++ 
Sbjct: 25  KYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILS 84

Query: 727 NIRHRNHVKRISSCSNEDFKALDC-LHSTNCSLNIFDKL------------NIMIDVASA 773
            + H N +K +    N+ F  L    H +   L  F  +             I   + SA
Sbjct: 85  RVEHANIIKVLDIFENQGFFQLVMEKHGSGLDL--FAFIDRHPRLDEPLASYIFRQLVSA 142

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYM 822
           + YL       +IH D+K +N+           DFG    L   +      T   TI Y 
Sbjct: 143 VGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLF---YTFCGTIEYC 196

Query: 823 AP 824
           AP
Sbjct: 197 AP 198

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 33/157 (21%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA----ECEVMKNIRHRNHVKR 736
           L+G GS+G V +          A+K+  +     + + EA    E ++++ +RH+N ++ 
Sbjct: 12  LLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQL 71

Query: 737 ISSCSNEDFKALDCL---HSTNCSLNIFDKLN---IMIDVA--------SALEYLHFSHS 782
           +    NE+ + +  +   +       + D +      +  A          LEYLH S  
Sbjct: 72  VDVLYNEEKQKM-YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH-SQG 129

Query: 783 TPVIHCDLKPKN----------VFDFGIGRLLTGDRS 809
             ++H D+KP N          +   G+   L    +
Sbjct: 130 --IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAA 164

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 49/192 (25%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECE------- 723
            + +++ +   +G G++G VYK         VAIK             E E E       
Sbjct: 31  TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIR---------LEHEEEGVPGTAI 81

Query: 724 ----VMKNIRHRNHVKRISSCSNED-----FKALDC-LHSTNCSLNIFDKLNI---MIDV 770
               ++K ++HRN ++  S   +       F+  +  L              I   +  +
Sbjct: 82  REVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQL 141

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLLTGDRSMIQTET 815
            + + + H S     +H DLKP+N+                DFG+ R   G      T  
Sbjct: 142 INGVNFCH-SRR--CLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR-AFGIPIRQFTHE 197

Query: 816 LVTIGYMAPGLL 827
           ++T+ Y  P +L
Sbjct: 198 IITLWYRPPEIL 209

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 34/161 (21%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK----VFHQNCAMALKSFEAECEVM 725
           ++  +++   +LIG GS+G V +     +   VAIK    VF ++     +    E  ++
Sbjct: 49  WQIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF-EDLIDCKRILR-EIAIL 106

Query: 726 KNIRHRNHVKR---ISSCSNEDFKAL-------DC-LHS---TNCSLNIFDKLNIMIDVA 771
             + H + VK    +     E F  L       D        T   L       ++ ++ 
Sbjct: 107 NRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLL 166

Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR 802
             ++Y+H   S  ++H DLKP N            DFG+ R
Sbjct: 167 VGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLAR 204

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 34/187 (18%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK---VFHQNCAMALKSFEAECEVM 725
           +F    +++  + IG G++G V       + + VAIK    F ++     ++   E +++
Sbjct: 22  VFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF-EHQTYCQRTLR-EIKIL 79

Query: 726 KNIRHRNHVK---RISSCSNEDFKAL-------DC-LHSTNCSLNIFD--KLNIMIDVAS 772
              RH N +     I + + E  K +       +  L+    + ++ +      +  +  
Sbjct: 80  LRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILR 139

Query: 773 ALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ--TETLVTIG 820
            L+Y+H   S  V+H DLKP N+           DFG+ R+   D       TE + T  
Sbjct: 140 GLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRW 196

Query: 821 YMAPGLL 827
           Y AP ++
Sbjct: 197 YRAPEIM 203

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC- 740
           IG GSFG +Y G  +    EVAIK+ +            E ++ + ++    +  +    
Sbjct: 15  IGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH--PQLLYESKIYRILQGGTGIPNVRWFG 72

Query: 741 SNEDFKAL----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDL 790
              D+  L          D  +  +  L++   L +   + + +E++H       +H D+
Sbjct: 73  VEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKS---FLHRDI 129

Query: 791 KPKNVFDFGIGR 802
           KP N F  G+GR
Sbjct: 130 KPDN-FLMGLGR 140

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 66/214 (30%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
           ++K+S    +G GSFG V +   +  G   A+K   Q+     +    E ++MK + H N
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNR----ELDIMKVLDHVN 61

Query: 733 HVK--------------RISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEY-- 776
            +K                    + +          N   ++    +    +   +EY  
Sbjct: 62  IIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP 121

Query: 777 --------------------------------LHFSHSTPVIHCDLKPKNVF-------- 796
                                           + F HS  + H D+KP+N+         
Sbjct: 122 DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTL 181

Query: 797 ---DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
              DFG  + L           + +  Y AP L+
Sbjct: 182 KLCDFGSAKKLIPSEPS--VAYICSRFYRAPELM 213

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 38/187 (20%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK----VFHQNCAMALKSFEAECEV 724
           ++   E++   + +G G++GSV        G+ VA+K     F Q+   A +++  E  +
Sbjct: 24  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF-QSIIHAKRTYR-ELRL 81

Query: 725 MKNIRHRNHVK----RISSCSNEDFKAL-------DC-LHSTNCS--LNIFDKLNIMIDV 770
           +K+++H N +        + S E+F  +          L++      L       ++  +
Sbjct: 82  LKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQI 141

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIG 820
              L+Y+H   S  +IH DLKP N+           DFG+ R    +     T  + T  
Sbjct: 142 LRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE----MTGYVATRW 194

Query: 821 YMAPGLL 827
           Y AP ++
Sbjct: 195 YRAPEIM 201

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 43/194 (22%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK---VFHQNCAMALKSFEAECEVMK 726
           +  +  F  ++L+G G++G V        G  VAIK    F      AL++   E +++K
Sbjct: 7   YNISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF-DKPLFALRTLR-EIKILK 64

Query: 727 NIRHRNHVKR---ISSCSNEDFKAL-------DC-LH---STNCSLNIFDKLNIMIDVAS 772
           + +H N +         S E+F  +          LH   ST   L+       +     
Sbjct: 65  HFKHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQ-MLSDDHIQYFIYQTLR 123

Query: 773 ALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ---------T 813
           A++ LH    + VIH DLKP N+           DFG+ R++    +             
Sbjct: 124 AVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMV 180

Query: 814 ETLVTIGYMAPGLL 827
           E + T  Y AP ++
Sbjct: 181 EFVATRWYRAPEVM 194

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 39/209 (18%), Positives = 61/209 (29%), Gaps = 88/209 (42%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA-------------------- 720
            IG GS+G V      +D    A+KV  +   +    F                      
Sbjct: 20  EIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGP 79

Query: 721 ------ECEVMKNIRHRNHVKRISSCSNEDFKALDCLH-----STNCSL----------N 759
                 E  ++K + H N VK               L           L           
Sbjct: 80  IEQVYQEIAILKKLDHPNVVK---------------LVEVLDDPNEDHLYMVFELVNQGP 124

Query: 760 IFDKLN-----------IMIDVASALEYLHFSHSTPVIHCDLKPKN----------VFDF 798
           + +                 D+   +EYLH+     +IH D+KP N          + DF
Sbjct: 125 VMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADF 181

Query: 799 GIGRLLTGDRSMIQTETLVTIG---YMAP 824
           G+     G  +++      T+G   +MAP
Sbjct: 182 GVSNEFKGSDALLSN----TVGTPAFMAP 206

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 39/186 (20%)

Query: 673 ATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA-------ECEV 724
           ++ +F +   +G G++ +VYKG     G+ VA+K         L S E        E  +
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVK------LDSEEGTPSTAIREISL 56

Query: 725 MKNIRHRNHVKRISSCSNE------------DFKALDCLHSTNCSLNIFDKLNIMIDVAS 772
           MK ++H N V+       E            D K      +   +    +   +      
Sbjct: 57  MKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQ 116

Query: 773 ALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG-DRSMIQTETLVTIGY 821
            L+ L F H   ++H DLKP+N+           DFG+ R       +   +  +VT+ Y
Sbjct: 117 LLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTF--SSEVVTLWY 174

Query: 822 MAPGLL 827
            AP +L
Sbjct: 175 RAPDVL 180

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 31/188 (16%), Positives = 70/188 (37%), Gaps = 38/188 (20%)

Query: 666 SYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA---- 720
           S+   +   + +     +G G +  V++   + +  +V +K+        LK  +     
Sbjct: 27  SHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKI--------LKPVKKKKIK 78

Query: 721 -ECEVMKNIR-HRNHVKRI----SSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVAS-- 772
            E ++++N+R   N +          S       + +++T+    ++  L    D+    
Sbjct: 79  REIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFK-QLYQTLTDY-DIRFYM 136

Query: 773 --ALEYLHFSHSTPVIHCDLKPKNV-----------FDFGIGRLLTGDRSMIQTETLVTI 819
              L+ L + HS  ++H D+KP NV            D+G+       +       + + 
Sbjct: 137 YEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY--NVRVASR 194

Query: 820 GYMAPGLL 827
            +  P LL
Sbjct: 195 YFKGPELL 202

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 59/201 (29%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECE------- 723
               K+ K   IG G+FG V+K R    G +VA+K             E E E       
Sbjct: 14  DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVL---------MENEKEGFPITAL 64

Query: 724 ----VMKNIRHRN--------HVKRISSCSNE------------DFKALDCLHSTNCSLN 759
               +++ ++H N          K       +            D   L  L +      
Sbjct: 65  REIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGL--LSNVLVKFT 122

Query: 760 IFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS 809
           + +   +M  + + L Y+H +    ++H D+K  NV           DFG+ R  +  ++
Sbjct: 123 LSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKN 179

Query: 810 MIQ---TETLVTIGYMAPGLL 827
                 T  +VT+ Y  P LL
Sbjct: 180 SQPNRYTNRVVTLWYRPPELL 200

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 44/167 (26%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIK------VFHQNCAMALKSFEAECEVMKNI 728
           ++    L+G G FGSVY G  + D + VAIK      +              E  ++K +
Sbjct: 44  QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 103

Query: 729 RHRN-HVKRISSCSNEDFKALDCL-----HSTNCSLNIFDKL------------NIMIDV 770
                 V R+     + F+  D              ++FD +            +    V
Sbjct: 104 SSGFSGVIRLL----DWFERPDSFVLILERPEPVQ-DLFDFITERGALQEELARSFFWQV 158

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTG 806
             A+ + H +    V+H D+K +N+            DFG G LL  
Sbjct: 159 LEAVRHCH-NCG--VLHRDIKDENILIDLNRGELKLIDFGSGALLKD 202

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 58/201 (28%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECE------ 723
             AT ++     IGVG++G+VYK R  H G  VA+K                        
Sbjct: 5   SMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVR---------VPNGGGGGGGLP 55

Query: 724 -----------VMKNIRHRNHVKRISSCSNEDFKALDCLH-------------STNCSLN 759
                       ++   H N V+ +  C+         +                     
Sbjct: 56  ISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPP 115

Query: 760 IFDKLNI---MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG 806
                 I   M      L++LH ++   ++H DLKP+N+           DFG+ R+ + 
Sbjct: 116 GLPAETIKDLMRQFLRGLDFLH-ANC--IVHRDLKPENILVTSGGTVKLADFGLARIYSY 172

Query: 807 DRSMIQTETLVTIGYMAPGLL 827
             ++  T  +VT+ Y AP +L
Sbjct: 173 QMAL--TPVVVTLWYRAPEVL 191

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 38/186 (20%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK----VFHQNCAMALKSFEAECEVM 725
           +     +     +G G++G+V        G +VAIK     F Q+   A +++  E  ++
Sbjct: 21  WEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF-QSELFAKRAYR-ELRLL 78

Query: 726 KNIRHRNHVK----RISSCSNEDFKAL-------DC-LHS--TNCSLNIFDKLNIMIDVA 771
           K++RH N +          + +DF             L     +  L       ++  + 
Sbjct: 79  KHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQML 138

Query: 772 SALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGY 821
             L Y+H   +  +IH DLKP N+           DFG+ R    D  M  T  +VT  Y
Sbjct: 139 KGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLAR--QADSEM--TGYVVTRWY 191

Query: 822 MAPGLL 827
            AP ++
Sbjct: 192 RAPEVI 197

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 57/198 (28%)

Query: 670 LFRATEKFSK-----ENLIGVGSFGSVYKGR-LHDGIEVAIKVFH--QNCAMALKSFEAE 721
            F++ E F+         +G G F  V +      G E A K     +           E
Sbjct: 19  YFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHE 78

Query: 722 CEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSL--------NIFDKL--------- 764
             V++  +    V  +    +E ++    +      L         IF            
Sbjct: 79  IAVLELAKSCPRVINL----HEVYENTSEII-----LILEYAAGGEIFSLCLPELAEMVS 129

Query: 765 -----NIMIDVASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGIGRLLTG 806
                 ++  +   + YLH ++   ++H DLKP+N             + DFG+ R +  
Sbjct: 130 ENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGH 186

Query: 807 DRSMIQTETLVTIGYMAP 824
              +   E + T  Y+AP
Sbjct: 187 ACEL--REIMGTPEYLAP 202

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 38/181 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEA-------ECEVMK 726
           E + K + +G G++ +VYKG+       VA+K         L+  E        E  ++K
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIR------LEHEEGAPCTAIREVSLLK 55

Query: 727 NIRHRNHVKRISSCSNED-----FKALDC-----LHSTNCSLNIFDKLNIMIDVASALEY 776
           +++H N V        E      F+ LD      L      +N+ +    +  +   L Y
Sbjct: 56  DLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAY 115

Query: 777 LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGL 826
            H      V+H DLKP+N+           DFG+ R      +      +VT+ Y  P +
Sbjct: 116 CH-RQK--VLHRDLKPQNLLINERGELKLADFGLARAK-SIPTKTYDNEVVTLWYRPPDI 171

Query: 827 L 827
           L
Sbjct: 172 L 172

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 30/141 (21%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
            +G G F +V+  + + +   VA+K+   +     ++ E E ++++ +   ++ K  S  
Sbjct: 26  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY-TEAAEDEIKLLQRVNDADNTKEDSMG 84

Query: 741 SNEDFKALD------------CLHSTNCSLNIFD--KLN------------IMIDVASAL 774
           +N   K LD             +       N+    K              I   +   L
Sbjct: 85  ANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGL 144

Query: 775 EYLHFSHSTPVIHCDLKPKNV 795
           +Y+H      +IH D+KP+NV
Sbjct: 145 DYMHRRCG--IIHTDIKPENV 163

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 38/165 (23%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA------ECEVMKNI 728
           ++    L+G G FG+V+ G  L D ++VAIKV  +N  +             E  ++  +
Sbjct: 32  EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKV 91

Query: 729 R----HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKL------------NIMIDVAS 772
                H   ++ +     ++   L          ++FD +                 V +
Sbjct: 92  GAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQ-DLFDYITEKGPLGEGPSRCFFGQVVA 150

Query: 773 ALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTG 806
           A+++ H      V+H D+K +N+            DFG G LL  
Sbjct: 151 AIQHCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGSGALLHD 192

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 66/203 (32%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR--LHDGIEVAIKVFHQNCAMALKSFEAECE------ 723
           RA +++     IG G++G V+K R   + G  VA+K             +   E      
Sbjct: 8   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVR---------VQTGEEGMPLST 58

Query: 724 --------VMKNIRHRN--------HVKRISSCSN---------EDFKA-LDCLHSTNCS 757
                    ++   H N         V R    +          +D    LD        
Sbjct: 59  IREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLD-----KVP 113

Query: 758 LNIFDKLNI---MIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL 804
                   I   M  +   L++LH SH   V+H DLKP+N+           DFG+ R+ 
Sbjct: 114 EPGVPTETIKDMMFQLLRGLDFLH-SHR--VVHRDLKPQNILVTSSGQIKLADFGLARIY 170

Query: 805 TGDRSMIQTETLVTIGYMAPGLL 827
           +   ++  T  +VT+ Y AP +L
Sbjct: 171 SFQMAL--TSVVVTLWYRAPEVL 191

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 67/186 (36%)

Query: 682 LIGVGSFGSVYKGRLHDGIEV-AIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSC 740
            IG GSFG V   + +D  ++ A+K  ++           +C     +R+     +I   
Sbjct: 22  AIGKGSFGKVCIVQKNDTKKMYAMKYMNK----------QKCVERNEVRNVFKELQIMQG 71

Query: 741 SNEDFKALDCLHSTNCSLNIF---DKLNIMID---------------------------- 769
               F  L  L  +      F   + + +++D                            
Sbjct: 72  LEHPF--LVNLWYS------FQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICE 123

Query: 770 VASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-T 818
           +  AL+YL    +  +IH D+KP N+           DF I  +L  +       T+  T
Sbjct: 124 LVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ---ITTMAGT 177

Query: 819 IGYMAP 824
             YMAP
Sbjct: 178 KPYMAP 183

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 36/222 (16%), Positives = 58/222 (26%), Gaps = 74/222 (33%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVF-----HQNCAMALKSFEAECEVMKN 727
            +K+  +  IG GS+G V            AIK+       Q     ++  + E  +MK 
Sbjct: 25  QKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKK 84

Query: 728 ----------------------------------IRHRNHVKRISSCSNEDFKALDCLHS 753
                                             +             +     +     
Sbjct: 85  LHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPE 144

Query: 754 TNCSLNIFDKL----------------NIMIDVASALEYLHFSHSTPVIHCDLKPKN--- 794
            N                         NIM  + SAL YLH      + H D+KP+N   
Sbjct: 145 CNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQG---ICHRDIKPENFLF 201

Query: 795 ---------VFDFGIGRLLTGDRSMIQTE--TLV-TIGYMAP 824
                    + DFG+ +      +       T   T  ++AP
Sbjct: 202 STNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAP 243

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 57/165 (34%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA---ECEVMKNIRHRNHVKRI 737
            +GVG+FG V  G     G +VA+K+ ++    +L        E + +K  RH + +K  
Sbjct: 18  TLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIK-- 75

Query: 738 SSCSNEDFKALDCLH---STNCSLNI----------FDKL----NIMIDVA--------S 772
                        L+   ST     +          FD +     +    A        S
Sbjct: 76  -------------LYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILS 122

Query: 773 ALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGD 807
           A++Y    H   V+H DLKP+N          + DFG+  +++  
Sbjct: 123 AVDYC---HRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 34/190 (17%)

Query: 665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK----VFHQNCAMALKSFE 719
           F         + +  ++LIG GS+G VY     +    VAIK    +F ++     +   
Sbjct: 16  FQGIKNVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF-EDLIDCKRILR 74

Query: 720 AECEVMKNIRHRNHVKR---ISSCSNEDFKAL-------DC-LHS---TNCSLNIFDKLN 765
            E  ++  ++    ++    I       F  L       D  L     T   L       
Sbjct: 75  -EITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLTEEHIKT 133

Query: 766 IMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           I+ ++     ++H    + +IH DLKP N            DFG+ R +  ++       
Sbjct: 134 ILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVND 190

Query: 816 LVTIGYMAPG 825
           L       P 
Sbjct: 191 LEENEEPGPH 200

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 52/147 (35%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR----------- 729
           +IG GSFG V K         VA+K+         +    E  +++++R           
Sbjct: 104 VIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRF-HRQAAEEIRILEHLRKQDKDNTMNVI 162

Query: 730 -------HRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKL--------------NIMI 768
                   RNH+               C+     S+N+++ +                  
Sbjct: 163 HMLENFTFRNHI---------------CMTFELLSMNLYELIKKNKFQGFSLPLVRKFAH 207

Query: 769 DVASALEYLHFSHSTPVIHCDLKPKNV 795
            +   L+ LH      +IHCDLKP+N+
Sbjct: 208 SILQCLDALH---KNRIIHCDLKPENI 231

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 56/164 (34%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA---ECEVMKNIRHRNHVKRI 737
            +G GSFG V          +VA+K   +              E   +K +RH + +K  
Sbjct: 16  TLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIK-- 73

Query: 738 SSCSNEDFKALDCLH---STNCSL---------NIFDKLN----IMIDVA--------SA 773
                        L+   +T   +          +FD +     +  D           A
Sbjct: 74  -------------LYDVITTPTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICA 120

Query: 774 LEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGD 807
           +EY    H   ++H DLKP+N          + DFG+  ++T  
Sbjct: 121 IEYC---HRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 381 SLENIYISNCNIG-GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNK 439
           ++  + + NC    G I  L +   NL  L L    L  S+     +L KL+ L L  N+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENR 82

Query: 440 LAGSIPDQLCHLARLNTLGLAGNKFSG-SIPSCLGNLTSLRSPDLGSNRLTS 490
           + G +      L  L  L L+GNK    S    L  L  L+S DL +  +T+
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 402 NLSNLLLLDLEGNKLT-GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA 460
             + +  L L+  K   G I         L+ L L    L  S+   L  L +L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
            N+  G +      L +L   +L  N+L  +
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 57/165 (34%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA---ECEVMKNIRHRNHVKRI 737
            +GVG+FG V  G+    G +VA+K+ ++    +L        E + +K  RH + +K  
Sbjct: 23  TLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIK-- 80

Query: 738 SSCSNEDFKALDCLH---STNCSLNI----------FDKL----NIMIDVA--------S 772
                        L+   ST   + +          FD +     +    +        S
Sbjct: 81  -------------LYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILS 127

Query: 773 ALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGD 807
            ++Y    H   V+H DLKP+N          + DFG+  +++  
Sbjct: 128 GVDYC---HRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 381 SLENIYISNCNIG-GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNK 439
            ++ + + N     G +  L      L  L      LT SI     +L KL+ L L  N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNR 75

Query: 440 LAGSIPDQLCHLARLNTLGLAGNKFSG-SIPSCLGNLTSLRSPDLGSNRLT 489
           ++G +         L  L L+GNK    S    L  L +L+S DL +  +T
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 402 NLSNLLLLDLEGNKLT-GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA 460
             S++  L L+ ++   G +       ++L+ L      L  SI   L  L +L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
            N+ SG +        +L   +L  N++  +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 396 IPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLN 455
             Q  +N      LDL G K+   I      L +   +    N++   + D    L RL 
Sbjct: 12  AAQY-TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLK 67

Query: 456 TLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS 490
           TL +  N+           L  L    L +N L  
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 32/164 (19%), Positives = 49/164 (29%), Gaps = 38/164 (23%)

Query: 116 PQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDI 175
            Q  N      L+L   K+   I     T+ +   +DFSDN++                 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---------------- 55

Query: 176 RLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSG-A 234
                KL G  P      L  LK L +  N               L  L L    L    
Sbjct: 56  -----KLDG-FP-----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 235 IPKEISNLTILRKISLRNNKL------RGEIPHEIGYLPNLENL 272
               +++L  L  + +  N +      R  +   I  +P +  L
Sbjct: 105 DLDPLASLKSLTYLCILRNPVTNKKHYRLYV---IYKVPQVRVL 145

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 39/163 (23%), Positives = 57/163 (34%), Gaps = 56/163 (34%)

Query: 683 IGVGSFGSVYKGR-LHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISS 739
           IG G+F  V   R +  G EVAIK+  +      +L+    E  +MK + H N VK    
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVK---- 78

Query: 740 CSNEDFKALDCLH---STNCSLNI----------FDKL------------NIMIDVASAL 774
                      L     T  +L +          FD L            +    + SA+
Sbjct: 79  -----------LFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAV 127

Query: 775 EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD 807
           +Y H      ++H DLK +N+           DFG     T  
Sbjct: 128 QYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVG 167

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 72/218 (33%)

Query: 659 SKTLRRFSYQDLFRATEKFSKEN-----LIGVGSFGSVYKGRLHDGIEV-AIKVFHQNCA 712
           S    RF            +  +     +IG G FG VY  R  D  ++ A+K       
Sbjct: 168 SDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKC------ 221

Query: 713 MALKSFEAECEVMKNIRHRNHVKRI-SSCSNEDFKALDCLHSTNCSLNIF---DKLNIMI 768
             L   +   ++ +      + + + S  S  D   + C+         F   DKL+ ++
Sbjct: 222 --LD--KKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYA------FHTPDKLSFIL 271

Query: 769 D----------------------------VASALEYLHFSHSTPVIHCDLKPKNVF---- 796
           D                            +   LE++H   +  V++ DLKP N+     
Sbjct: 272 DLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEH 328

Query: 797 ------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
                 D G+    +  +        V T GYMAP +L
Sbjct: 329 GHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVL 362

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 31/136 (22%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEA---ECEVMKNIR----HRNH 733
            +G G+FG V   + + +    A+KV             +   E +++K I+    + N+
Sbjct: 42  KMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKY----TRSAKIEADILKKIQNDDINNNN 97

Query: 734 VKRISSCSNEDFKALDCLHSTNCSLNIFD--KLN------------IMIDVASALEYLHF 779
           + +        +    CL       ++++    N              I++  AL YL  
Sbjct: 98  IVKYHGKF--MYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR- 154

Query: 780 SHSTPVIHCDLKPKNV 795
                + H DLKP+N+
Sbjct: 155 --KMSLTHTDLKPENI 168

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 39/185 (21%)

Query: 668 QDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMK 726
             +   ++++     IG G+FG     R       VA+K   +  A+  ++ + E    +
Sbjct: 13  MPIMHDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID-ENVQREIINHR 71

Query: 727 NIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKL----NIMIDVA--------SAL 774
           ++RH N V+           A+   +++   L  ++++        D A        S +
Sbjct: 72  SLRHPNIVRFKEVILTPTHLAIIMEYASGGEL--YERICNAGRFSEDEARFFFQQLLSGV 129

Query: 775 EYLHFSHSTPVIHCDLKPKN------------VFDFGIGRLLTGDRSMIQTETLVTIG-- 820
            Y H      + H DLK +N            + DFG  +      S  ++    T+G  
Sbjct: 130 SYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH-SQPKS----TVGTP 181

Query: 821 -YMAP 824
            Y+AP
Sbjct: 182 AYIAP 186

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 56/181 (30%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKS-FEAECEVMKNIRHRNHVKRISS 739
            +G G++G V           VA+K+     A+      + E  + K + H N VK    
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVK---- 69

Query: 740 CSNEDFKALDCLH---STNCSLNI----------FDKL----NIMIDVA--------SAL 774
                       +          +          FD++     +    A        + +
Sbjct: 70  -----------FYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGV 118

Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLV-TIGYMA 823
            YL   H   + H D+KP+N          + DFG+  +   +        +  T+ Y+A
Sbjct: 119 VYL---HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175

Query: 824 P 824
           P
Sbjct: 176 P 176

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 38/177 (21%)

Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEV-AIKVFHQNCAMALKS---FEAECEVMKNIRHRN 732
           +    +IG G+FG V   R     +V A+K+  +   +       F  E ++M       
Sbjct: 71  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 130

Query: 733 HVKRISSCSNED--FKALDCLHSTNCS----LNIFDKLNIMIDVA--------SALEYLH 778
            V+   +  ++   +  ++            +N+    ++    A         AL+ +H
Sbjct: 131 VVQLFYAFQDDRYLYMVMEY-----MPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIH 185

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
              S   IH D+KP N+           DFG    +  +  M++ +T V T  Y++P
Sbjct: 186 ---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE-GMVRCDTAVGTPDYISP 238

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 34/194 (17%), Positives = 52/194 (26%), Gaps = 62/194 (31%)

Query: 659 SKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKV--------FHQN 710
            K    FS+      TEK  +   IG G FG V++    D   VAIK+         + +
Sbjct: 7   QKGPVPFSH---CLPTEKLQRCEKIGEGVFGEVFQTI-ADHTPVAIKIIAIEGPDLVNGS 62

Query: 711 CAMALKSFEAECEVMKNIRHRNHVKRISS---------------CSNEDFKALDCLHSTN 755
                +    E  + K +   +      +                     KA D  +ST 
Sbjct: 63  HQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTK 122

Query: 756 CSLNIFDK---------------------------------LNIMIDVASALEYLHFSHS 782
            S N                                      +I+  + ++L     S  
Sbjct: 123 GSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLR 182

Query: 783 TPVIHCDLKPKNVF 796
               H DL   NV 
Sbjct: 183 --FEHRDLHWGNVL 194

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 49/180 (27%)

Query: 656 GGKSKTLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA 714
           G   K+  +     +    +  S+   +G+G  G V +        + A+K+        
Sbjct: 1   GPHVKSGLQIKKNAIIDDYKVTSQV--LGLGINGKVLQIFNKRTQEKFALKMLQDC---- 54

Query: 715 LKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKAL-DCLH--STNCS---LNIFDKL--- 764
                 E E+     +  + V+ +     E+  A   CL           L  F ++   
Sbjct: 55  -PKARREVELHWRASQCPHIVRIVDVY--ENLYAGRKCLLIVMECLDGGEL--FSRIQDR 109

Query: 765 -----------NIMIDVASALEYLHFSHSTPVIHCDLKPKN-------------VFDFGI 800
                       IM  +  A++YLH  +   + H D+KP+N             + DFG 
Sbjct: 110 GDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGF 166

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 24/135 (17%)

Query: 681 NLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-----HRNHV 734
           +LIG GSFG V K     +   VAIK+     A  L   + E  +++ +       + ++
Sbjct: 60  SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAF-LNQAQIEVRLLELMNKHDTEMKYYI 118

Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFDKL--------------NIMIDVASALEYLHFS 780
             +       F+   CL     S N++D L                   + +AL +L   
Sbjct: 119 VHLKRHF--MFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP 176

Query: 781 HSTPVIHCDLKPKNV 795
             + +IHCDLKP+N+
Sbjct: 177 ELS-IIHCDLKPENI 190

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 56/181 (30%)

Query: 682 LIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISS 739
            +G G++G V           VA+K+     A+   ++ + E  + K + H N VK    
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVK---- 69

Query: 740 CSNEDFKALDCLH---STNCSLNI----------FDKL----NIMIDVA--------SAL 774
                       +          +          FD++     +    A        + +
Sbjct: 70  -----------FYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGV 118

Query: 775 EYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLV-TIGYMA 823
            YL   H   + H D+KP+N          + DFG+  +   +        +  T+ Y+A
Sbjct: 119 VYL---HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175

Query: 824 P 824
           P
Sbjct: 176 P 176

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 17/160 (10%), Positives = 40/160 (25%), Gaps = 36/160 (22%)

Query: 682 LIGVGSFGSVYKGRLHDGI---EVAIKVFHQNCAMA---LKSFEAECEVMKNIRHRNHVK 735
             G       ++    D     +VA+        +    L+   +    +  I      +
Sbjct: 38  FHGGVPPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95

Query: 736 RISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
            +          +           +   +   S +    +  M  +A+A +    +H   
Sbjct: 96  VLDVVHTRAGGLVVAEWIRGGSLQEVADT---SPSPVGAIRAMQSLAAAADA---AHRAG 149

Query: 785 VIHCDLKPKNVFDFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           V      P  V        ++ D  ++    L     M  
Sbjct: 150 VALSIDHPSRV-------RVSIDGDVV----LAYPATMPD 178

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 37/333 (11%), Positives = 96/333 (28%), Gaps = 39/333 (11%)

Query: 104 NISSLNLQGTIPPQLG---------NLSSLTTLNLS--HNKLSGDIPPSIFT-MHKLKFL 151
           N+  L+L+ +    +            +SL +LN+S   +++S      + T    LK L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 152 DFSDNQLSGSLSSVTFNLSSVLDIRL-----DSDKLSGELPVNICNYLHYLKVLFLAKNM 206
             +       L+++      + ++       +             +    L+ L    + 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 207 FHGQIPLALSKCKRLQLLNLGFKKLSG-AIPKEISNLTILRKISLRNNKLRGEIPHEIGY 265
               +P   S C RL  LNL +  +    + K +     L+++ + +      +      
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 266 LPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGL 325
             +L  L +  +    + P        +  +                +  P +E +    
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSV---------------SMGCPKLESVLYFC 381

Query: 326 NRFSG-TIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLEN 384
            + +   + +   N   +    +           T+             +I      L  
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF-----GAIVEHCKDLRR 436

Query: 385 IYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT 417
           + +S          + +    + +L +     +
Sbjct: 437 LSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS 469

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 396 IPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLN 455
           +   +S L     L L  N +   I  +   ++ L+ L L  N +   I +       L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 456 TLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
            L ++ N+ + S+ S +  L +LR   + +N++T+ 
Sbjct: 97  ELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNW 130

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 33/138 (23%)

Query: 682 LIGVGSFGSVYKGRLH--DGIEVAIKVFHQNCAMALKSFEA---ECEVMKNIRH-----R 731
            +G G+FG V +   H     +VA+K+            EA   E  V+K I+      +
Sbjct: 26  NLGEGTFGKVVECLDHARGKSQVALKIIRNVGKY----REAARLEINVLKKIKEKDKENK 81

Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDKL--------------NIMIDVASALEYL 777
                +S     +F    C+       N F+ L              ++   +  AL +L
Sbjct: 82  FLCVLMSDWF--NFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFL 139

Query: 778 HFSHSTPVIHCDLKPKNV 795
           H +    + H DLKP+N+
Sbjct: 140 HENQ---LTHTDLKPENI 154

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 33/138 (23%)

Query: 682 LIGVGSFGSVYKGRLH--DGIEVAIKVFHQNCAMALKSFEA---ECEVMKNIR-----HR 731
            +G G+FG V +   H   G  VA+K+            EA   E +V++++        
Sbjct: 21  TLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRY----CEAARSEIQVLEHLNTTDPNST 76

Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFD--KLN------------IMIDVASALEYL 777
               ++      +     C+      L+ +D  K N            +   +  ++ +L
Sbjct: 77  FRCVQMLEWF--EHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFL 134

Query: 778 HFSHSTPVIHCDLKPKNV 795
           H +    + H DLKP+N+
Sbjct: 135 HSNK---LTHTDLKPENI 149

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 42/183 (22%)

Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEV-AIKVFHQNCAMALKS---FEAECEVMKNIRHRN 732
           F    +IG G+FG V   +L +  +V A+K+ ++   +       F  E +V+ N   + 
Sbjct: 76  FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKW 135

Query: 733 HVKRISSCSNED--FKALDCL-------HSTNCSLNIFDKLNIMIDVA--------SALE 775
                 +  +++  +  +D           +    +   +     ++A         A++
Sbjct: 136 ITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFE-DRLPE-----EMARFYLAEMVIAID 189

Query: 776 YLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
            +H       +H D+KP N+           DFG    L  D   +Q+   V T  Y++P
Sbjct: 190 SVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED-GTVQSSVAVGTPDYISP 245

Query: 825 GLL 827
            +L
Sbjct: 246 EIL 248

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 62/395 (15%), Positives = 121/395 (30%), Gaps = 78/395 (19%)

Query: 224 LNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYL-----PNLENLVLGFNN 278
             L     S  + +  S    +  + L  N L      E+         ++ +L L  N+
Sbjct: 3   YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62

Query: 279 LVGVVPAAIFNM-----STVKKIYLLDNSL--LGSFSLGIDLSLPN--VERLNLGLNRFS 329
           L       +  +     + V  + L  N L    S  L   L+     +  L+LG N FS
Sbjct: 63  LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 330 GT-----IPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLEN 384
                    +F    + +  L++  N         +G+        L   +  +  ++ +
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGND--------LGIKS---SDELIQILAAIPANVNS 171

Query: 385 IYISNCNIGGS-----IPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNK 439
           + +   N+           L S  +++  LDL  N L                      K
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG--------------------LK 211

Query: 440 LAGSIPDQLCHL-ARLNTLGLAGNKFSGS----IPSCLGNLTSLRSPDLGSNRLTSV--- 491
               +      +   + +L L  N   G     +     +L  L++  L  + + ++   
Sbjct: 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271

Query: 492 ----LPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDL 547
               L + F N++ I+  D +   +    S+ I NL       +   +   D+PS    L
Sbjct: 272 QCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL-------IRELSGKADVPS----L 320

Query: 548 KDLQNISLACNGLEGLIPESFGYLTELNLSFNKLE 582
            +   I    +            L E   +   L 
Sbjct: 321 LNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 51/318 (16%), Positives = 102/318 (32%), Gaps = 73/318 (22%)

Query: 321 LNLGLNRFSGT--IPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGV--LPTSIG 376
           +N  L    G+  +  F +    +  LD+  N+                     L  +  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-------------ISTVELIQAFA 47

Query: 377 NLSMSLENIYISNCNIGGSIPQ-----LISNLSNLLLLDLEGNKLTGSIPVTFGRL---- 427
           N   S+ ++ +S  ++G          L +  +N+  L+L GN L+        +     
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107

Query: 428 -QKLQGLYLPFNK--------LAGSIPDQLCHLARL----NTLGLAGNK-FSGSIPSCLG 473
              +  L L +N            +  +    +  L    N LG+  +      + +   
Sbjct: 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167

Query: 474 NLTSLRSPDLGSNRLT--------SVLPSTFWNLKDILFFDLSSNSLDGPLSLDIG---- 521
           N+ SL   +L  N L           L S   ++  +   DLS+N L      ++     
Sbjct: 168 NVNSL---NLRGNNLASKNCAELAKFLASIPASVTSL---DLSANLLGLKSYAELAYIFS 221

Query: 522 -NLRVVIGINLSRNNFSGDIPSTIGDLKD----LQNISLACNGLEGLIPESFGY------ 570
                V+ +NL  N   G     +  LKD    LQ + L  + ++ +  E          
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 571 ----LTELNLSFNKLEGE 584
               +  ++ +  ++   
Sbjct: 282 NIQKIILVDKNGKEIHPS 299

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 47/180 (26%)

Query: 682 LIGVGSFGSVYKGRLHDGIEV-AIKVF---------HQNCAMALKSFEAECEVMKNIRHR 731
           ++G G FG V   ++    ++ A K            +  A+       E ++++ +  R
Sbjct: 191 VLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALN------EKQILEKVNSR 244

Query: 732 NHVKRISSCSNED--FKALDCL-------HSTNCSLNIFDKLNIMI---DVASALEYLHF 779
             V    +   +D     L  +       H  +     F +   +    ++   LE LH 
Sbjct: 245 FVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH- 303

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGR-LLTGDRSMIQTETLV-TIGYMAPGLL 827
                +++ DLKP+N+           D G+   +  G       +  V T+GYMAP ++
Sbjct: 304 --RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT----IKGRVGTVGYMAPEVV 357

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 54/357 (15%), Positives = 105/357 (29%), Gaps = 50/357 (14%)

Query: 158 LSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMF--HGQIPLAL 215
           L G   +  FNL     I  +           I N L  LK +   + +        LA 
Sbjct: 80  LKGKPRAAMFNL-----IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK 134

Query: 216 SKCKRLQLLNL-GFKKLSGAIPKEI-SNLTILRKISLRNNKLRGEIPHEIGYL----PNL 269
           ++   L+ L L      +      I ++   ++ + +  +    +    +  L     +L
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194

Query: 270 ENLVLGFNNLVGVVPAAIF----NMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGL 325
           E L         + P  +     N  ++  + + D  +L         +  N+E    G 
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF--KAAANLEEFCGGS 252

Query: 326 NRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENI 385
                 +P    N      L       S + PN +              +   +  +  +
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCR--LGLSYMGPNEM------------PILFPFAAQIRKL 298

Query: 386 YISNCN-IGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL-------PF 437
            +            LI    NL +L+         + V     ++L+ L +         
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358

Query: 438 NKLAGSIPDQ-LCHLAR----LNTLGLAGNKFS----GSIPSCLGNLTSLRSPDLGS 485
               G +  + L  LA+    L  + +  +  +     SI + L NL   R   L  
Sbjct: 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 33/172 (19%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIK----VFHQNCAMALKSFEAECEVM 725
                K+     +G G++G V+K      G  VA+K     F QN   A ++F  E  ++
Sbjct: 5   RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAF-QNSTDAQRTFR-EIMIL 62

Query: 726 KNIR-HRNHVKRISSCSNEDFKAL-------DC-LH---STNCSLNIFDKLNIMIDVASA 773
             +  H N V  ++    ++ + +       +  LH     N  L    K  ++  +   
Sbjct: 63  TELSGHENIVNLLNVLRADNDRDVYLVFDYMETDLHAVIRAN-ILEPVHKQYVVYQLIKV 121

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET 815
           ++YLH   S  ++H D+KP N+           DFG+ R     R +     
Sbjct: 122 IKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIP 170

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 40/182 (21%)

Query: 677 FSKENLIGVGSFGSVYKGRLHDGIEV-AIKVFHQNCAMALK---SFEAECEVMKNIRHRN 732
           F    +IG G+F  V   ++    +V A+K+ ++   +       F  E +V+ N   R 
Sbjct: 63  FEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRW 122

Query: 733 HVKRISSCSNEDFKAL--------DCLHSTNCSLNIFDKLNIMIDVA--------SALEY 776
             +   +  +E++  L        D L   +             ++A         A++ 
Sbjct: 123 ITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPA-----EMARFYLAEIVMAIDS 177

Query: 777 LHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPG 825
           +H       +H D+KP N+           DFG    L  D   +++   V T  Y++P 
Sbjct: 178 VH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRAD-GTVRSLVAVGTPDYLSPE 233

Query: 826 LL 827
           +L
Sbjct: 234 IL 235

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD------GIEVAIKVFHQN-CAMALKSFEAECEVMKN 727
           ++      +G G+FG V +              VA+K+  +       ++  +E +++ +
Sbjct: 22  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 81

Query: 728 I-RHRNHVKRISSCSNED 744
           I  H N V  + +C+   
Sbjct: 82  IGHHLNVVNLLGACTKPG 99

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 16/69 (23%)

Query: 770 VASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-T 818
           + S LE+LH      +I+ DLKP+NV           D G+   L   ++  +T+    T
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQT--KTKGYAGT 352

Query: 819 IGYMAPGLL 827
            G+MAP LL
Sbjct: 353 PGFMAPELL 361

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP----DQLCH 450
           S+P  I   +   +L L  N++T   P  F RL +L  L L  N+L   +P    D    
Sbjct: 23  SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFD---K 76

Query: 451 LARLNTLGLAGNKFSGSIPSCLG---NLTSLRSPDLGSN 486
           L +L  L L  N+   SIP   G   NL SL    L +N
Sbjct: 77  LTQLTQLSLNDNQLK-SIPR--GAFDNLKSLTHIWLLNN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	827
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.95
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.94
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.94
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.94
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.94
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.93
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.93
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.92
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.89
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.85
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.84
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
3niz_A	311	Rhodanese family protein; structural genomics, str	99.84
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.84
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.84
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.83
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.83
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.83
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.83
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.83
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.83
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.83
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.82
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.82
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.82
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.82
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.82
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.82
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.82
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.82
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.82
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.82
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.82
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.82
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.82
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.82
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.82
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.82
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.82
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.82
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.82
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.82
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.82
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.82
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.81
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.81
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.81
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.81
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.81
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.81
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.81
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.81
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.81
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.81
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.81
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.81
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.81
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.81
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.81
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.8
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.8
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.8
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.8
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.8
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.8
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.8
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.8
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.8
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.8
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.8
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.8
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.8
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.8
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.8
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.8
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.8
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.8
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.79
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.79
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.79
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.79
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.79
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.79
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.79
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.79
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.79
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.79
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.79
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.79
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.79
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.79
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.79
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.79
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.79
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.79
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.79
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.79
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.79
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.79
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.79
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.79
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.79
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.79
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.79
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.78
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.78
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.78
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.78
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.78
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.78
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.78
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.78
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.78
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.78
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.78
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.78
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.78
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.78
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.78
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.78
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.78
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.78
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.78
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.78
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.78
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.78
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.78
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.78
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.78
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.78
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.78
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.78
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.78
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.78
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.78
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.78
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.77
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.77
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.77
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.77
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.77
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.77
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.77
3bhy_A	283	Death-associated protein kinase 3; death associate	99.77
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.77
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.77
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.77
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.77
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.77
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.77
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.77
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.77
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.77
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.76
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.76
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.76
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.76
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.76
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.76
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.76
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.76
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.76
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.76
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.76
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.76
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.76
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.76
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.76
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.76
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.76
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.76
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.76
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.76
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.76
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.76
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.76
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.76
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.76
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.76
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.75
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.75
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.75
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.75
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.75
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.75
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.75
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.75
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.75
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.74
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.74
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.74
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.74
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.74
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.74
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.74
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.74
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.73
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.73
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.73
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.73
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.73
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.73
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.73
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.73
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.73
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.72
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.72
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.72
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.72
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.71
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.71
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.69
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.69
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.69
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.68
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
3uqc_A	286	Probable conserved transmembrane protein; structur	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.59
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.17
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.8
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.15
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.93
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	96.39
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.39
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.0
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	95.27
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.09
3ats_A	357	Putative uncharacterized protein; hypothetical pro	94.99
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	94.93
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	93.76
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	90.46
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	87.95
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	87.43
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	86.81
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	83.21
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	82.23

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.7e-81  Score=754.18  Aligned_cols=563  Identities=34%  Similarity=0.550  Sum_probs=443.9

Q ss_pred             hccCCCHHHHHHHHHHHhhcCCCCCCcCCCCCCCCCCCCcccceecCCCCCcEEEEEcCCCCCccc---cC---------
Q 047196           48 AAASNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGT---IP---------  115 (827)
Q Consensus        48 ~~~~~~~~~~~aLl~~k~~~~~~~~~~l~~w~~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~---~~---------  115 (827)
                      +++++.++|++||++||+++. ||. .+++|. .++|||+|.||+|+  +++|+.|||+++++.|.   +|         
T Consensus         5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~-~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLP-DKN-LLPDWS-SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCS-CTT-SSTTCC-TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             ccccCCHHHHHHHHHHHhhCC-Ccc-cccCCC-CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            445557899999999999995 887 899998 67899999999998  58999999999999886   43         


Q ss_pred             --------------ccccCCCCCCEEECCCCCCCccCCh--hhhhccccceEEecCCCCCCcccccc-CCCCCCcEEEcC
Q 047196          116 --------------PQLGNLSSLTTLNLSHNKLSGDIPP--SIFTMHKLKFLDFSDNQLSGSLSSVT-FNLSSVLDIRLD  178 (827)
Q Consensus       116 --------------~~l~~L~~L~~L~Ls~N~l~g~~p~--~~~~l~~L~~LdLs~N~l~g~~p~~~-~~l~~L~~L~L~  178 (827)
                                    +.++++++|++|||++|.++|.+|.  .++++++|++|||++|.+++.+|..+ .++++|++|+|+
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  159 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS  159 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence                          5788899999999999999999998  89999999999999999988877765 667777777777


Q ss_pred             CCCCCCCcchhH---h---------------------hccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCccc
Q 047196          179 SDKLSGELPVNI---C---------------------NYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGA  234 (827)
Q Consensus       179 ~n~l~g~ip~~~---~---------------------~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  234 (827)
                      +|.+++..|..+   .                     ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.
T Consensus       160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~  238 (768)
T 3rgz_A          160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD  238 (768)
T ss_dssp             SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred             CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence            777665555431   0                     1234566666666666665555 66666666666666666555


Q ss_pred             CCCcCcCCccccEEEcccc----------------------cccccccccccCc-CCCcEEEeecccCcccCchhhhcCC
Q 047196          235 IPKEISNLTILRKISLRNN----------------------KLRGEIPHEIGYL-PNLENLVLGFNNLVGVVPAAIFNMS  291 (827)
Q Consensus       235 ~p~~~~~l~~L~~L~Ls~N----------------------~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~  291 (827)
                      +|..++++++|++|++++|                      +++|.+|..+..+ ++|++|+|++|++++.+|..+.+++
T Consensus       239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  318 (768)
T 3rgz_A          239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS  318 (768)
T ss_dssp             HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred             ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence            5555555544444444444                      4444566666554 7788888888888777787788888


Q ss_pred             CccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCC-CCcEEEcCCCccee----------------
Q 047196          292 TVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNAS-KLVYLDMGTNSFSG----------------  354 (827)
Q Consensus       292 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g----------------  354 (827)
                      +|++|++++|.+.|.+|......+++|++|++++|++++.+|..+.+++ +|+.|++++|.++|                
T Consensus       319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~  398 (768)
T 3rgz_A          319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE  398 (768)
T ss_dssp             TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred             CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence            8888888888887777766444677777777777777777776665554 55555555555554                


Q ss_pred             ----------ecCCCc---------cCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcc
Q 047196          355 ----------IIPNTI---------GLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNK  415 (827)
Q Consensus       355 ----------~~p~~~---------~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  415 (827)
                                .+|..+         .+++|.+++.+|..+..++ +|++|++++|++++.+|..+..+++|+.|++++|+
T Consensus       399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence                      444322         2556666666777776665 77788888888887888888888888888888888


Q ss_pred             ccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCcc
Q 047196          416 LTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPST  495 (827)
Q Consensus       416 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  495 (827)
                      ++|.+|..+.++++|++|+|++|++++.+|.++..+++|++|++++|+++|.+|..++++++|++||+++|+++|.+|..
T Consensus       478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred             ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence            88888888888888888888888888888888888889999999999998889998999999999999999888877765


Q ss_pred             cc----------------------------------------------------------------------cccccccc
Q 047196          496 FW----------------------------------------------------------------------NLKDILFF  505 (827)
Q Consensus       496 ~~----------------------------------------------------------------------~l~~L~~L  505 (827)
                      +.                                                                      .+++|++|
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L  637 (768)
T 3rgz_A          558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL  637 (768)
T ss_dssp             GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred             HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence            43                                                                      34678899


Q ss_pred             CCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCCc---CCceEeCcCCcCe
Q 047196          506 DLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLE  582 (827)
Q Consensus       506 dLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~N~l~  582 (827)
                      ||++|+++|.+|.++++++.|+.|||++|+++|.||..++++++|+.|||++|+++|.||..++   .|++||+|+|+++
T Consensus       638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999998775   7899999999999


Q ss_pred             ecCCCCCCCCCCcccccccCccccCCCCCCCccccccc
Q 047196          583 GEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKCKRRT  620 (827)
Q Consensus       583 g~ip~~~~~~~~~~~~~~~n~~lc~~p~~~~~~c~~~~  620 (827)
                      |+||.+++|.+++..+|.||+++||.|   .++|....
T Consensus       718 g~iP~~~~~~~~~~~~~~gN~~Lcg~~---l~~C~~~~  752 (768)
T 3rgz_A          718 GPIPEMGQFETFPPAKFLNNPGLCGYP---LPRCDPSN  752 (768)
T ss_dssp             EECCSSSSGGGSCGGGGCSCTEEESTT---SCCCCSCC
T ss_pred             ccCCCchhhccCCHHHhcCCchhcCCC---CcCCCCCc
Confidence            999999999999999999999999965   24787544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.8e-63  Score=598.54  Aligned_cols=479  Identities=31%  Similarity=0.477  Sum_probs=422.8

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      +++.|+|++|.+.+.++  +.++++|++|+|++|++++.+|. ++++++|++|+|++|.+++.+|..+.++++|++|+++
T Consensus       179 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             TCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            56666666666655443  36778888888888888877776 8888888888888888888888888888888888888


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccccCCccCCCC-CCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC-KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG  257 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (827)
                      +|.+.|.+|..   .+++|++|++++|.++|.+|..+.+. ++|++|++++|.+++.+|..++++++|++|++++|+++|
T Consensus       256 ~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  332 (768)
T 3rgz_A          256 SNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG  332 (768)
T ss_dssp             SSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             CCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence            88888877765   35588999999999988888888775 899999999999999999999999999999999999988


Q ss_pred             ccccc-ccCcCCCcEEEeecccCcccCchhhhcCC-CccEEEecCCccccccChhhhc-CCCCccEEeCcCCccccccCc
Q 047196          258 EIPHE-IGYLPNLENLVLGFNNLVGVVPAAIFNMS-TVKKIYLLDNSLLGSFSLGIDL-SLPNVERLNLGLNRFSGTIPS  334 (827)
Q Consensus       258 ~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~  334 (827)
                      .+|.. ++.+++|++|+|++|++++.+|..+.++. +|+.|++++|.+.|.+|..+.. .+++|++|++++|++++.+|.
T Consensus       333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  412 (768)
T 3rgz_A          333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP  412 (768)
T ss_dssp             ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred             cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence            88876 88999999999999999999999988887 8999999999998888876652 278899999999999999999


Q ss_pred             cccCCCCCcEEEcCCCcceeecCCCc---------cCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCC
Q 047196          335 FITNASKLVYLDMGTNSFSGIIPNTI---------GLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSN  405 (827)
Q Consensus       335 ~~~~l~~L~~L~Ls~N~l~g~~p~~~---------~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~  405 (827)
                      .+.++++|+.|++++|++++.+|..+         .+++|.+++.+|..+..+. +|++|++++|+++|.+|..+.++++
T Consensus       413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~  491 (768)
T 3rgz_A          413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTN  491 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCC
Confidence            99999999999999999999888643         4789999999999998887 8999999999999999999999999


Q ss_pred             CceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccc-------------
Q 047196          406 LLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCL-------------  472 (827)
Q Consensus       406 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-------------  472 (827)
                      |++|+|++|++++.+|.+++.+++|++|+|++|+++|.+|..+.++++|++|++++|+++|.+|..+             
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~  571 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA  571 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred             CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999998887654             


Q ss_pred             ---------------------------------------------------------cCCCCCCccccCCCcccccCCcc
Q 047196          473 ---------------------------------------------------------GNLTSLRSPDLGSNRLTSVLPST  495 (827)
Q Consensus       473 ---------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~  495 (827)
                                                                               +.+++|++|||++|+++|.+|.+
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  651 (768)
T 3rgz_A          572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE  651 (768)
T ss_dssp             SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred             cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence                                                                     33567899999999999999999


Q ss_pred             ccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCC--CcCCce
Q 047196          496 FWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPES--FGYLTE  573 (827)
Q Consensus       496 ~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~--~~~L~~  573 (827)
                      +++++.|+.|||++|+++|.+|..+++++.|+.||||+|+++|.||..+++++.|+.||+++|+++|.||+.  |..+..
T Consensus       652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~  731 (768)
T 3rgz_A          652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP  731 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred             HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999974  445666


Q ss_pred             EeCcCCc-Ceec
Q 047196          574 LNLSFNK-LEGE  584 (827)
Q Consensus       574 L~ls~N~-l~g~  584 (827)
                      ..+.+|. ++|.
T Consensus       732 ~~~~gN~~Lcg~  743 (768)
T 3rgz_A          732 AKFLNNPGLCGY  743 (768)
T ss_dssp             GGGCSCTEEEST
T ss_pred             HHhcCCchhcCC
Confidence            6677774 6764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.9e-60  Score=560.35  Aligned_cols=494  Identities=19%  Similarity=0.277  Sum_probs=362.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCC-------cCCCCCCCCCCCCcc---cceecCCCCCcEEEEEcCCCCCccccCccccC
Q 047196           51 SNITTDQQALLALKAHISYDPTN-------LLAQNSTSNTSVCNW---IGITCNVNSHRVTALNISSLNLQGTIPPQLGN  120 (827)
Q Consensus        51 ~~~~~~~~aLl~~k~~~~~~~~~-------~l~~w~~~~~~~C~W---~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~  120 (827)
                      +....|++||.+++.++..+...       ...+|. .+.|||.|   .||+|+.. ++|+.|+|++++++|.+|+++++
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~  103 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-FNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ  103 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC-CSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-CCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence            34457999999999997433222       234787 56899999   99999865 89999999999999999999999


Q ss_pred             CCCCCEEECCCCCC------Cc------cCChhhhhccccceEEecCCCCCCccccccCCC-CCCcEEEcCCCCCCCCcc
Q 047196          121 LSSLTTLNLSHNKL------SG------DIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNL-SSVLDIRLDSDKLSGELP  187 (827)
Q Consensus       121 L~~L~~L~Ls~N~l------~g------~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l-~~L~~L~L~~n~l~g~ip  187 (827)
                      |++|++|||++|.+      .|      .+|.+.  +.+|+ +++++|.+.+.+|..+..+ ..+..+++....+...  
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  178 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS--  178 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC--
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccc--
Confidence            99999999999976      44      567666  77888 9999999998887765521 1111122221111100  


Q ss_pred             hhHhhccccccEEEe--ecccccccCCccCCCCCCCcEEEccCCCCccc-----------------CCCcCc--CCcccc
Q 047196          188 VNICNYLHYLKVLFL--AKNMFHGQIPLALSKCKRLQLLNLGFKKLSGA-----------------IPKEIS--NLTILR  246 (827)
Q Consensus       188 ~~~~~~~~~L~~L~L--s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~  246 (827)
                           ....++.+.+  ..|+++| +|..++++++|++|+|++|.+++.                 +|..++  ++++|+
T Consensus       179 -----~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~  252 (636)
T 4eco_A          179 -----SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT  252 (636)
T ss_dssp             -----CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred             -----cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC
Confidence                 0001222222  2566777 777777777777777777777775                 777777  777777


Q ss_pred             EEEcccccccccccccccCcCCCcEEEeeccc-Ccc-cCchhhhcC------CCccEEEecCCccccccCh--hhhcCCC
Q 047196          247 KISLRNNKLRGEIPHEIGYLPNLENLVLGFNN-LVG-VVPAAIFNM------STVKKIYLLDNSLLGSFSL--GIDLSLP  316 (827)
Q Consensus       247 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~~l~  316 (827)
                      +|+|++|++.+.+|..++++++|++|+|++|+ ++| .+|..+.++      ++|++|++++|.+. .+|.  .+. .++
T Consensus       253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~  330 (636)
T 4eco_A          253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMK  330 (636)
T ss_dssp             EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCT
T ss_pred             EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCC
Confidence            77777777777777777777777777777777 777 777777665      77777777777777 6665  444 677


Q ss_pred             CccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhccccc-ccEEEccCCcCccc
Q 047196          317 NVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMS-LENIYISNCNIGGS  395 (827)
Q Consensus       317 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~-L~~L~Ls~N~l~g~  395 (827)
                      +|++|++++|+++|.+| .+..+++|+.|++++|+++ .+               |..+..+. + |++|++++|+++ .
T Consensus       331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~l---------------p~~l~~l~-~~L~~L~Ls~N~l~-~  391 (636)
T 4eco_A          331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EI---------------PANFCGFT-EQVENLSFAHNKLK-Y  391 (636)
T ss_dssp             TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-EC---------------CTTSEEEC-TTCCEEECCSSCCS-S
T ss_pred             CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cc---------------cHhhhhhc-ccCcEEEccCCcCc-c
Confidence            77888888888777777 7777777888888777776 32               33445554 4 788888888877 6


Q ss_pred             cCccccCCC--CCceEeccCcccccccccccc-------CCCCCcEEECCCCCCCCCCCcc-ccccccccEEecCCCccc
Q 047196          396 IPQLISNLS--NLLLLDLEGNKLTGSIPVTFG-------RLQKLQGLYLPFNKLAGSIPDQ-LCHLARLNTLGLAGNKFS  465 (827)
Q Consensus       396 ~p~~~~~l~--~L~~L~Ls~N~l~g~~p~~~~-------~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~  465 (827)
                      +|..+..++  +|+.|++++|++++.+|..+.       .+++|++|+|++|+++ .+|.. +..+++|+.|+|++|+++
T Consensus       392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            777766654  788888888888877777777       6778888888888887 44444 445778888888888887


Q ss_pred             ccCCccccC-C-------CCCCccccCCCcccccCCcccc--ccccccccCCCCCCCCCCCcccccccccCceEEc----
Q 047196          466 GSIPSCLGN-L-------TSLRSPDLGSNRLTSVLPSTFW--NLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINL----  531 (827)
Q Consensus       466 ~~~p~~~~~-l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L----  531 (827)
                       .+|..+.. .       ++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..++.++.|+.|++    
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence             55554332 2       27888888888887 5666665  78888888888888887 7778888888888888    


Q ss_pred             --ccceeeecccccccCCCCCCEEECCCCcceeecCCCC-cCCceEeCcCCcCee
Q 047196          532 --SRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF-GYLTELNLSFNKLEG  583 (827)
Q Consensus       532 --s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~-~~L~~L~ls~N~l~g  583 (827)
                        ++|++.+.+|..++++++|+.|+|++|++ +.+|..+ .+|+.||+++|++..
T Consensus       548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNIS  601 (636)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCE
T ss_pred             ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCcc
Confidence              56888999999999999999999999999 6777655 589999999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.6e-58  Score=548.63  Aligned_cols=475  Identities=19%  Similarity=0.239  Sum_probs=352.0

Q ss_pred             hccCCCHHHHHHHHHHHhhcCCCCCCcCCCCCCCC----CCC--Ccc------------cceecCCCCCcEEEEEcCCCC
Q 047196           48 AAASNITTDQQALLALKAHISYDPTNLLAQNSTSN----TSV--CNW------------IGITCNVNSHRVTALNISSLN  109 (827)
Q Consensus        48 ~~~~~~~~~~~aLl~~k~~~~~~~~~~l~~w~~~~----~~~--C~W------------~gv~C~~~~~~v~~L~L~~~~  109 (827)
                      .++++..+|++||++||+++ .+|     +|...+    .+|  |.|            .||+|+. .++|+.|+|++++
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l-~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~  334 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEAL-DGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFG  334 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHT-TGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTC
T ss_pred             cccccchHHHHHHHHHHHHc-CCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCC
Confidence            34455678999999999998 455     675333    355  999            9999986 5899999999999


Q ss_pred             CccccCccccCCCCCCEEEC-CCCCCCccCChhhhhc-------------------------------------------
Q 047196          110 LQGTIPPQLGNLSSLTTLNL-SHNKLSGDIPPSIFTM-------------------------------------------  145 (827)
Q Consensus       110 l~g~~~~~l~~L~~L~~L~L-s~N~l~g~~p~~~~~l-------------------------------------------  145 (827)
                      +.|.+|++|++|++|++||| ++|.++|..|-.....                                           
T Consensus       335 L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~  414 (876)
T 4ecn_A          335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM  414 (876)
T ss_dssp             CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred             CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence            99999999999999999999 9998887744221100                                           


Q ss_pred             --------cccceEEec--CCCCCCccccccCCCCCCcEEEcCCCCCCC-CcchhHhhccccccEEEeecccccccCCcc
Q 047196          146 --------HKLKFLDFS--DNQLSGSLSSVTFNLSSVLDIRLDSDKLSG-ELPVNICNYLHYLKVLFLAKNMFHGQIPLA  214 (827)
Q Consensus       146 --------~~L~~LdLs--~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g-~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~  214 (827)
                              ..++.+.++  .|+++| +|..+.++++|++|+|++|.++| .+|..+..         .+.|.++|.+|..
T Consensus       415 ~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~---------~s~n~~~g~iP~~  484 (876)
T 4ecn_A          415 KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED---------ANSDYAKQYENEE  484 (876)
T ss_dssp             CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC---------TTSHHHHHHTTSC
T ss_pred             cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc---------cccccccccCChh
Confidence                    111112221  144444 44444444444444444444443 12211110         1113333368999


Q ss_pred             CC--CCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccc-ccc-cccccccCcC-------CCcEEEeecccCcccC
Q 047196          215 LS--KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNK-LRG-EIPHEIGYLP-------NLENLVLGFNNLVGVV  283 (827)
Q Consensus       215 l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~  283 (827)
                      ++  ++++|++|+|++|.+.+.+|..++++++|++|+|++|+ ++| .+|..++.++       +|++|+|++|+++ .+
T Consensus       485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i  563 (876)
T 4ecn_A          485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF  563 (876)
T ss_dssp             CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred             hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence            88  99999999999999999999999999999999999998 888 8898777666       9999999999999 78


Q ss_pred             ch--hhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCC-CcEEEcCCCcceeecCCCc
Q 047196          284 PA--AIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASK-LVYLDMGTNSFSGIIPNTI  360 (827)
Q Consensus       284 p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~g~~p~~~  360 (827)
                      |.  .+.++++|+.|++++|.+. .+| .+ ..+++|+.|+|++|+++ .+|..+..+++ |+.|++++|.++ .+|.  
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~-~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~--  636 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVR-HLE-AF-GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN--  636 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCC-BCC-CC-CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS--
T ss_pred             CChhhhhcCCCCCEEECCCCCcc-cch-hh-cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch--
Confidence            88  8999999999999999988 777 44 37899999999999999 88888999998 999999999987 4443  


Q ss_pred             cCCCCCCcccCCCchhccc-ccccEEEccCCcCccccCccc---c--CCCCCceEeccCccccccccccccCCCCCcEEE
Q 047196          361 GLTGNPLDGVLPTSIGNLS-MSLENIYISNCNIGGSIPQLI---S--NLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLY  434 (827)
Q Consensus       361 ~l~~n~l~g~~p~~~~~~~-~~L~~L~Ls~N~l~g~~p~~~---~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  434 (827)
                                   .+.... .+|+.|++++|+++|.+|...   .  .+++|+.|+|++|+++...+..+..+++|+.|+
T Consensus       637 -------------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~  703 (876)
T 4ecn_A          637 -------------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII  703 (876)
T ss_dssp             -------------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred             -------------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence                         222222 149999999999998777543   2  345899999999999954334456899999999


Q ss_pred             CCCCCCCCCCCccccc--------cccccEEecCCCcccccCCcccc--CCCCCCccccCCCcccccCCccccccccccc
Q 047196          435 LPFNKLAGSIPDQLCH--------LARLNTLGLAGNKFSGSIPSCLG--NLTSLRSPDLGSNRLTSVLPSTFWNLKDILF  504 (827)
Q Consensus       435 Ls~N~l~g~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  504 (827)
                      |++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus       704 Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~  780 (876)
T 4ecn_A          704 LSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA  780 (876)
T ss_dssp             CCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCE
T ss_pred             CCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCE
Confidence            9999998 66765543        338999999999999 7888887  89999999999999998 7888999999999


Q ss_pred             cCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCC-cCCceEeCcCCcCe
Q 047196          505 FDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF-GYLTELNLSFNKLE  582 (827)
Q Consensus       505 LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~-~~L~~L~ls~N~l~  582 (827)
                      |+|++|.                  ++++|++.+.+|..++++++|+.|+|++|++ +.+|..+ .+|+.|||++|++.
T Consensus       781 L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          781 FGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNI  840 (876)
T ss_dssp             EECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTC
T ss_pred             EECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCC
Confidence            9998854                  3445555555555555555555555555555 4444433 24555555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.2e-55  Score=526.05  Aligned_cols=510  Identities=21%  Similarity=0.232  Sum_probs=411.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      .+|+.|+|++|++++..+..|.++++|++|||++|.+++..|..|+++++|++|||++|++++..+..+.++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            57999999999999988888999999999999999999999999999999999999999999877778999999999999


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCc--CCccccEEEcccccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEIS--NLTILRKISLRNNKL  255 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l  255 (827)
                      ++|.+++..|..+. .+++|++|++++|.+++..|..++++++|++|++++|.+++..|..+.  .+++|++|++++|++
T Consensus       105 ~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            99999854444444 456999999999999999999999999999999999999987776654  558899999999999


Q ss_pred             cccccccccCc---------------------------CCCcEEEeecccCcccCchhhhcCCC--ccEEEecCCccccc
Q 047196          256 RGEIPHEIGYL---------------------------PNLENLVLGFNNLVGVVPAAIFNMST--VKKIYLLDNSLLGS  306 (827)
Q Consensus       256 ~~~~p~~~~~l---------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~l~~n~l~~~  306 (827)
                      ++..|..+..+                           ++|++|++++|.+++..|..+.+++.  |+.|++++|.+.+.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            88877766544                           45677777777777777777777654  88888888887766


Q ss_pred             cChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceee-----cCC-------------CccCCCCCCc
Q 047196          307 FSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI-----IPN-------------TIGLTGNPLD  368 (827)
Q Consensus       307 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~-----~p~-------------~~~l~~n~l~  368 (827)
                      .+..+. .+++|++|++++|++++..|..+.++++|+.|++++|...+.     +|.             .+.+++|.+.
T Consensus       264 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~  342 (680)
T 1ziw_A          264 GNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP  342 (680)
T ss_dssp             CTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred             Cccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence            655544 677888888888888777776666666666666655433321     110             1124444444


Q ss_pred             ccCCCchhccc---------------------------ccccEEEccCCcCccccCccccCCCCCceEeccCcccccccc
Q 047196          369 GVLPTSIGNLS---------------------------MSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP  421 (827)
Q Consensus       369 g~~p~~~~~~~---------------------------~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p  421 (827)
                      +..|..+..++                           .+|+.|++++|++++..|..|..+++|+.|++++|++++.+|
T Consensus       343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  422 (680)
T 1ziw_A          343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT  422 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred             CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence            43333332221                           257777777888888888888888999999999999887665


Q ss_pred             -ccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCccc--ccCCccccCCCCCCccccCCCcccccCCccccc
Q 047196          422 -VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS--GSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWN  498 (827)
Q Consensus       422 -~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  498 (827)
                       ..|.++++|++|++++|++.+..+..+..+++|+.|++++|.++  +.+|..+.++++|++|++++|++++..|..|.+
T Consensus       423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  502 (680)
T 1ziw_A          423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG  502 (680)
T ss_dssp             SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence             67888899999999999988888888888999999999999887  578889999999999999999999988888999


Q ss_pred             cccccccCCCCCCCCCCCc--------ccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCC--
Q 047196          499 LKDILFFDLSSNSLDGPLS--------LDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF--  568 (827)
Q Consensus       499 l~~L~~LdLs~N~l~g~~p--------~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~--  568 (827)
                      +++|+.|+|++|++++..+        ..+++++.|+.|++++|+++...+..|+++++|+.|+|++|++++..+..|  
T Consensus       503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            9999999999999986422        347889999999999999995444579999999999999999998777655  


Q ss_pred             -cCCceEeCcCCcCeecCCCC-C-CCCCCcccccccCccccCCC
Q 047196          569 -GYLTELNLSFNKLEGEIPRG-G-PFANFTAKSFMGNEKLCGLP  609 (827)
Q Consensus       569 -~~L~~L~ls~N~l~g~ip~~-~-~~~~~~~~~~~~n~~lc~~p  609 (827)
                       .+|+.|++++|++++..|.. + .+.++....+.|||..|.++
T Consensus       583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence             47999999999999876642 1 35667778889999999864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.1e-55  Score=516.70  Aligned_cols=490  Identities=19%  Similarity=0.191  Sum_probs=368.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      ..++.|||++|.+++..|.+|.++++|++|+|++|++++..|.+|.++++|++|+|++|++++..|..+.++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            47999999999999998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCcccc--EEEcccccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILR--KISLRNNKL  255 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~--~L~Ls~N~l  255 (827)
                      ++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+  .|++++|.+
T Consensus       113 ~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          113 IQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             TTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             cccCcccCCcchhc-cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            99999964344444 456999999999999985545555699999999999999998888899999999  899999999


Q ss_pred             cccccccccCcCCCcEEEeecccCc--------------------------ccCchhhhcCC--CccEEEecCCcccccc
Q 047196          256 RGEIPHEIGYLPNLENLVLGFNNLV--------------------------GVVPAAIFNMS--TVKKIYLLDNSLLGSF  307 (827)
Q Consensus       256 ~~~~p~~~~~l~~L~~L~Ls~N~l~--------------------------~~~p~~~~~l~--~L~~L~l~~n~l~~~~  307 (827)
                      ++..|..+.. .+|++|++++|...                          ...+..+..+.  +++.|++++|.+.+..
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~  270 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS  270 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred             CccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence            9877776654 57888888776411                          01111222222  6788888888876654


Q ss_pred             ChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEc
Q 047196          308 SLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYI  387 (827)
Q Consensus       308 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~L  387 (827)
                      +..+. .+++|++|++++|+++ .+|..+..+++|++|++++|.+++..|.               .+..++ +|++|++
T Consensus       271 ~~~~~-~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~-~L~~L~l  332 (606)
T 3t6q_A          271 SNTFH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI---------------SASNFP-SLTHLSI  332 (606)
T ss_dssp             TTTTT-TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG---------------CGGGCT-TCSEEEC
T ss_pred             HHHhc-cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh---------------hhhccC-cCCEEEC
Confidence            44343 7788888888888887 6777788888888888888887755442               333443 6777777


Q ss_pred             cCCcCccccCc-cccCCCCCceEeccCccccccc--cccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcc
Q 047196          388 SNCNIGGSIPQ-LISNLSNLLLLDLEGNKLTGSI--PVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKF  464 (827)
Q Consensus       388 s~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~--p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  464 (827)
                      ++|.+.+.+|. .+..+++|+.|++++|++++..  |..+..+++|++|++++|++.+..|..+..+++|+.|++++|++
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            77777765554 3677777777777777777655  56677777777777777777766677777777777777777777


Q ss_pred             cccCCcc-ccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCC---CCcccccccccCceEEcccceeeecc
Q 047196          465 SGSIPSC-LGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDG---PLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       465 ~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g---~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      ++..|.. +..+++|++|++++|.+++..|..+..+++|+.|++++|.+++   ..+..++.++.|+.|++++|++++.+
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            7665543 6677777777777777777777777777777777777777766   22345677777777777777777777


Q ss_pred             cccccCCCCCCEEECCCCcceeecCCCCc---CCceEeCcCCcCeecCCCC-CCCCCCcccccccCccccCC
Q 047196          541 PSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRG-GPFANFTAKSFMGNEKLCGL  608 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~  608 (827)
                      |..|+++++|+.|+|++|++++.+|..+.   .| .||+++|++++.+|.. ..+..+....+.||+..|.+
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            77777777777777777777777776654   44 6777777777655542 23344555666777766653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.1e-54  Score=508.12  Aligned_cols=483  Identities=22%  Similarity=0.224  Sum_probs=413.3

Q ss_pred             EEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCC
Q 047196          103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKL  182 (827)
Q Consensus       103 L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l  182 (827)
                      ++.++.+++ .+|..+..  .+++|||++|.+++..|..|.++++|++|||++|++++..|..|.++++|++|+|++|.+
T Consensus        17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            444555555 45655543  789999999999999899999999999999999999999999999999999999999999


Q ss_pred             CCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccccc
Q 047196          183 SGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHE  262 (827)
Q Consensus       183 ~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  262 (827)
                      ++..|..+.. +++|++|++++|.+++..|..++++++|++|++++|.+++..+..+..+++|++|++++|++++..|..
T Consensus        94 ~~~~~~~~~~-l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  172 (606)
T 3t6q_A           94 IFMAETALSG-PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED  172 (606)
T ss_dssp             SEECTTTTSS-CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred             cccChhhhcc-cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence            9766666555 559999999999999888889999999999999999999855445556999999999999999888999


Q ss_pred             ccCcCCCc--EEEeecccCcccCchhhhcCCCccEEEecCCcccc-------------------------ccChhhhcCC
Q 047196          263 IGYLPNLE--NLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLG-------------------------SFSLGIDLSL  315 (827)
Q Consensus       263 ~~~l~~L~--~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~~l  315 (827)
                      ++.+++|+  +|++++|.+++..|..+. ..+|+.|++++|....                         .++...+..+
T Consensus       173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l  251 (606)
T 3t6q_A          173 MSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL  251 (606)
T ss_dssp             HHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred             hhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence            99999999  999999999998877654 4689999998875211                         1111111111


Q ss_pred             --CCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCc
Q 047196          316 --PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIG  393 (827)
Q Consensus       316 --~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~  393 (827)
                        .+|+.|++++|++++..+..+..+++|++|++++|+++.                +|..+..++ +|++|++++|+++
T Consensus       252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------lp~~l~~l~-~L~~L~l~~n~l~  314 (606)
T 3t6q_A          252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE----------------LPSGLVGLS-TLKKLVLSANKFE  314 (606)
T ss_dssp             GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC----------------CCSSCCSCT-TCCEEECTTCCCS
T ss_pred             hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC----------------CChhhcccc-cCCEEECccCCcC
Confidence              278999999999999888889999999999999999872                344455555 8999999999999


Q ss_pred             cccCccccCCCCCceEeccCcccccccccc-ccCCCCCcEEECCCCCCCCCC--CccccccccccEEecCCCcccccCCc
Q 047196          394 GSIPQLISNLSNLLLLDLEGNKLTGSIPVT-FGRLQKLQGLYLPFNKLAGSI--PDQLCHLARLNTLGLAGNKFSGSIPS  470 (827)
Q Consensus       394 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~  470 (827)
                      +..|..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+.+..  |..+..+++|++|++++|++++..|.
T Consensus       315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  394 (606)
T 3t6q_A          315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE  394 (606)
T ss_dssp             BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred             cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence            998999999999999999999999877664 899999999999999999776  78899999999999999999999999


Q ss_pred             cccCCCCCCccccCCCcccccCCcc-ccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeec---ccccccC
Q 047196          471 CLGNLTSLRSPDLGSNRLTSVLPST-FWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGD---IPSTIGD  546 (827)
Q Consensus       471 ~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~---ip~~~~~  546 (827)
                      .+..+++|++|++++|.+++..|.. +..+++|+.|++++|.+++..|..++.++.|+.|++++|++++.   .+..+..
T Consensus       395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  474 (606)
T 3t6q_A          395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT  474 (606)
T ss_dssp             TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred             HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence            9999999999999999999887654 89999999999999999999999999999999999999999873   3367999


Q ss_pred             CCCCCEEECCCCcceeecCCCCc---CCceEeCcCCcCeecCCCC-CCCCCCcccccccCccccCCC
Q 047196          547 LKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRG-GPFANFTAKSFMGNEKLCGLP  609 (827)
Q Consensus       547 l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~p  609 (827)
                      +++|+.|++++|++++.+|..|+   +|+.|++++|++++.+|.. ..+..+ ...+.+|. +.+.+
T Consensus       475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~  539 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIIL  539 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCCCC
T ss_pred             CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccccC
Confidence            99999999999999999998765   7899999999999988753 234444 44555553 33443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.9e-53  Score=503.97  Aligned_cols=489  Identities=22%  Similarity=0.229  Sum_probs=425.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      .+++.|+|++|.+++..+.+|+++++|++|+|++|++++..|..|+++++|++|||++|.+++..|..+.++++|++|++
T Consensus        73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  152 (680)
T 1ziw_A           73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL  152 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred             cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence            46888999999888766667999999999999999998777788999999999999999999888888889999999999


Q ss_pred             CCCCCCCCcchhHhh-ccccccEEEeecccccccCCccCCCC---------------------------CCCcEEEccCC
Q 047196          178 DSDKLSGELPVNICN-YLHYLKVLFLAKNMFHGQIPLALSKC---------------------------KRLQLLNLGFK  229 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~-~~~~L~~L~Ls~N~l~~~~p~~l~~l---------------------------~~L~~L~L~~n  229 (827)
                      +.|.+++..|..+.. ..++|++|++++|.+++..|..+..+                           ++|+.|++++|
T Consensus       153 ~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n  232 (680)
T 1ziw_A          153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS  232 (680)
T ss_dssp             CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred             cCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC
Confidence            999998766655432 23589999999999998888766544                           56788888999


Q ss_pred             CCcccCCCcCcCCcc--ccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccc-
Q 047196          230 KLSGAIPKEISNLTI--LRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGS-  306 (827)
Q Consensus       230 ~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-  306 (827)
                      .+++..|..+.+++.  |++|++++|++++..|..|+.+++|++|+|++|++++..|..+.++++|+.|++++|...+. 
T Consensus       233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~  312 (680)
T 1ziw_A          233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI  312 (680)
T ss_dssp             CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--
T ss_pred             cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccc
Confidence            999988999988866  99999999999988889999999999999999999999999999999999999998765542 


Q ss_pred             ----cCh---hhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeec-C------------CCccCCCCC
Q 047196          307 ----FSL---GIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGII-P------------NTIGLTGNP  366 (827)
Q Consensus       307 ----~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~-p------------~~~~l~~n~  366 (827)
                          +|.   ..+..+++|++|++++|++++..|..+.++++|++|++++|.+++.. +            ..+.+++|.
T Consensus       313 ~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~  392 (680)
T 1ziw_A          313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK  392 (680)
T ss_dssp             ----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred             ccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence                221   12337899999999999999999999999999999999999865322 1            123478899


Q ss_pred             CcccCCCchhcccccccEEEccCCcCccccC-ccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCC--CC
Q 047196          367 LDGVLPTSIGNLSMSLENIYISNCNIGGSIP-QLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLA--GS  443 (827)
Q Consensus       367 l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~--g~  443 (827)
                      +++..|..+..+. +|++|++++|.+++.+| ..|.++++|+.|++++|++++..+..|..+++|+.|++++|.+.  +.
T Consensus       393 l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  471 (680)
T 1ziw_A          393 ISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS  471 (680)
T ss_dssp             CCEECTTTTTTCT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred             CCeEChhhhhCCC-CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence            9998898888887 89999999999998776 68999999999999999999999999999999999999999987  67


Q ss_pred             CCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCC--------ccccccccccccCCCCCCCCCC
Q 047196          444 IPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP--------STFWNLKDILFFDLSSNSLDGP  515 (827)
Q Consensus       444 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~LdLs~N~l~g~  515 (827)
                      +|..+.++++|+.|++++|++++..|..+.++++|++|++++|.+++..+        ..+.++++|+.|+|++|+++..
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence            89999999999999999999998888889999999999999999987532        2478899999999999999965


Q ss_pred             CcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCC----CcCCceEeCcCCcCeecCCC
Q 047196          516 LSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPES----FGYLTELNLSFNKLEGEIPR  587 (827)
Q Consensus       516 ~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~----~~~L~~L~ls~N~l~g~ip~  587 (827)
                      .+..+++++.|+.|++++|++++..+..|.++++|+.|+|++|++++.+|..    +.+|+.+++++|.+.+..+.
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            5567999999999999999999877778899999999999999999988864    56899999999999887653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-53  Score=504.01  Aligned_cols=483  Identities=19%  Similarity=0.174  Sum_probs=389.9

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      .+++.|+|++|.+++..+..|.++++|++|||++|++++..|.+|.++++|++|||++|.+++..|..+.++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            57999999999999998889999999999999999999988999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccc-cCCccCCCCCCCcEEEccCCCCcccCCCcCcCCcccc----EEEccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILR----KISLRN  252 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~----~L~Ls~  252 (827)
                      ++|.+++..|..+.. +++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..++.+++|+    +|++++
T Consensus       112 ~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          112 VETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             TTSCCCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             cCCccccccccccCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            999998655455544 5599999999999986 6799999999999999999999999999898888776    899999


Q ss_pred             ccccccccccccCcCCCcEEEeecccCc-ccCchhhhcCCCccEEEe---------------------------------
Q 047196          253 NKLRGEIPHEIGYLPNLENLVLGFNNLV-GVVPAAIFNMSTVKKIYL---------------------------------  298 (827)
Q Consensus       253 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l---------------------------------  298 (827)
                      |.+++..+..+.. .+|++|++++|.++ +.+|..+.+++.++.+++                                 
T Consensus       191 n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  269 (606)
T 3vq2_A          191 NPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT  269 (606)
T ss_dssp             CCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred             CCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence            9999665555554 48999999999987 456777888888887776                                 


Q ss_pred             cCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcc
Q 047196          299 LDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNL  378 (827)
Q Consensus       299 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~  378 (827)
                      ..|.+.+.+|. + ..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+ +.               +|. + .+
T Consensus       270 ~~~~~~~~~~~-~-~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~---------------lp~-~-~l  327 (606)
T 3vq2_A          270 YTNDFSDDIVK-F-HCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQ---------------FPT-L-DL  327 (606)
T ss_dssp             CCTTCCGGGGS-C-GGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SS---------------CCC-C-CC
T ss_pred             ccccccccccc-c-ccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cc---------------ccc-C-CC
Confidence            34444444443 2 255667777777776643 44 566666777777776666 33               332 2 33


Q ss_pred             cccccEEEccCCcCccccCccccCCCCCceEeccCcccccc--ccccccCCCCCcEEECCCCCCCCCCCccccccccccE
Q 047196          379 SMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGS--IPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNT  456 (827)
Q Consensus       379 ~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  456 (827)
                      + +|++|++++|...+.+  .+..+++|+.|++++|++++.  +|..+..+++|++|++++|.+.+ +|..+..+++|+.
T Consensus       328 ~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~  403 (606)
T 3vq2_A          328 P-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH  403 (606)
T ss_dssp             S-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred             C-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe
Confidence            3 7888888888665544  566788888888888888876  37778888888888888888874 6677888888888


Q ss_pred             EecCCCcccccCC-ccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCC-CCcccccccccCceEEcccc
Q 047196          457 LGLAGNKFSGSIP-SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDG-PLSLDIGNLRVVIGINLSRN  534 (827)
Q Consensus       457 L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L~Ls~N  534 (827)
                      |++++|++++..| ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..++.++.|+.|++++|
T Consensus       404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence            8888888887777 678888888888888888888888888888888888888888887 46888888888888888888


Q ss_pred             eeeecccccccCCCCCCEEECCCCcceeecCCCCc---CCceEeCcCCcCeecCCCC-CCCC-CCcccccccCccccCCC
Q 047196          535 NFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRG-GPFA-NFTAKSFMGNEKLCGLP  609 (827)
Q Consensus       535 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~N~l~g~ip~~-~~~~-~~~~~~~~~n~~lc~~p  609 (827)
                      ++++.+|..++++++|+.|+|++|++++.+|..++   +|+.||+++|+++ .+|.. ..+. ++....+.+|+..|.++
T Consensus       484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            88888888888888888888888888888887664   6788888888888 56654 2222 35556677888887653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.1e-54  Score=522.69  Aligned_cols=509  Identities=20%  Similarity=0.179  Sum_probs=360.4

Q ss_pred             CcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccC-ChhhhhccccceEEecCCCCCCcccc
Q 047196           86 CNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDI-PPSIFTMHKLKFLDFSDNQLSGSLSS  164 (827)
Q Consensus        86 C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~LdLs~N~l~g~~p~  164 (827)
                      |+|..|-+  ...+++.|||++|.+++..+.+|.++++|++|||++|.+.+.+ |.+|.++++|++|+|++|.+++..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            67888888  3468999999999999999999999999999999999777666 78899999999999999999999999


Q ss_pred             ccCCCCCCcEEEcCCCCCCCCcchh-HhhccccccEEEeecccccccCC-ccCCCCCCCcEEEccCCCCcccCCCcCcCC
Q 047196          165 VTFNLSSVLDIRLDSDKLSGELPVN-ICNYLHYLKVLFLAKNMFHGQIP-LALSKCKRLQLLNLGFKKLSGAIPKEISNL  242 (827)
Q Consensus       165 ~~~~l~~L~~L~L~~n~l~g~ip~~-~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  242 (827)
                      .+.++++|++|+|++|.+++.+|.. .+..+++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..|..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            9999999999999999999877765 34456699999999999998765 579999999999999999999999999888


Q ss_pred             --ccccEEEcccccccccccccccCcCC------CcEEEeecccCcccCchhhhcC---CCccEEEecCCcccc------
Q 047196          243 --TILRKISLRNNKLRGEIPHEIGYLPN------LENLVLGFNNLVGVVPAAIFNM---STVKKIYLLDNSLLG------  305 (827)
Q Consensus       243 --~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~l~~n~l~~------  305 (827)
                        ++|+.|++++|.+.+..|..++.+++      |++|++++|.+++.+|..+...   .+++.+.+..+....      
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              89999999999999999988887776      9999999999998888776643   456666665332211      


Q ss_pred             ---ccChhhh-cCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCcc---------CCCCCCcccCC
Q 047196          306 ---SFSLGID-LSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNPLDGVLP  372 (827)
Q Consensus       306 ---~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~---------l~~n~l~g~~p  372 (827)
                         .....+. ...++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+.         +++|.+++..|
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence               1111111 1135677777777777777777777777777777777777666553221         23333333333


Q ss_pred             CchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccc
Q 047196          373 TSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLA  452 (827)
Q Consensus       373 ~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~  452 (827)
                      ..+..++ +|+.|++++|++++..+..|..+++|+.|+|++|.+++..     .+++|+.|++++|+++ .+|..   ..
T Consensus       332 ~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~  401 (844)
T 3j0a_A          332 SNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NL  401 (844)
T ss_dssp             CSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CT
T ss_pred             HHhcCCC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc---cc
Confidence            3444443 4555555555555444445555555555555555554311     1444444444444444 23322   23


Q ss_pred             cccEEecCCCcccccC-CccccCCCCCCccccCCCcccccCCc-cccccccccccCCCCCCCC-----CCCccccccccc
Q 047196          453 RLNTLGLAGNKFSGSI-PSCLGNLTSLRSPDLGSNRLTSVLPS-TFWNLKDILFFDLSSNSLD-----GPLSLDIGNLRV  525 (827)
Q Consensus       453 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~-----g~~p~~~~~l~~  525 (827)
                      +++.|++++|++++.- +..+.++++|++|+|++|++++..+. .+..+++|+.|+|++|.++     +..+..+.+++.
T Consensus       402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~  481 (844)
T 3j0a_A          402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH  481 (844)
T ss_dssp             TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred             ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence            4455555555555321 12244667777777777777765443 3455677777777777776     334455667777


Q ss_pred             CceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCC-cCCceEeCcCCcCeecCCCCCCCCCCcccccccCcc
Q 047196          526 VIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF-GYLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEK  604 (827)
Q Consensus       526 L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~-~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~  604 (827)
                      |+.|+|++|+|++.+|..|..+++|+.|+|++|++++.+|..+ .+|+.||+++|+++|.+|.  .|..+....+.||+.
T Consensus       482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~  559 (844)
T 3j0a_A          482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKF  559 (844)
T ss_dssp             EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECC
T ss_pred             ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChh--HhCCcCEEEecCCCc
Confidence            7777777777777777777777777777777777777666555 3677777777777777764  355666666777777


Q ss_pred             ccCC
Q 047196          605 LCGL  608 (827)
Q Consensus       605 lc~~  608 (827)
                      .|.+
T Consensus       560 ~C~c  563 (844)
T 3j0a_A          560 ICEC  563 (844)
T ss_dssp             CCSS
T ss_pred             cccc
Confidence            7744

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.9e-51  Score=483.70  Aligned_cols=461  Identities=18%  Similarity=0.146  Sum_probs=412.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      .+++.|+|++|.+++..|.+|.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++..+..+.++++|++|++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            57999999999999999999999999999999999999998999999999999999999999988888999999999999


Q ss_pred             CCCCCCC-CcchhHhhccccccEEEeecccccccCCccCCCCCCCc----EEEccCCCCcccCCCcCcCCccccEEEccc
Q 047196          178 DSDKLSG-ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQ----LLNLGFKKLSGAIPKEISNLTILRKISLRN  252 (827)
Q Consensus       178 ~~n~l~g-~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  252 (827)
                      ++|.+.+ .+|..+.++ ++|++|++++|.+++..|..++.+++|+    +|++++|.+++..+..+... +|++|++++
T Consensus       136 ~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~  213 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG  213 (606)
T ss_dssp             CSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEES
T ss_pred             CCCcccceechHhHhhc-CCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccC
Confidence            9999986 678887775 5999999999999999898888877665    89999999997777666655 899999999


Q ss_pred             cccc-ccccccccCcCCCcEEEe---------------------------------ecccCcccCchhhhcCCCccEEEe
Q 047196          253 NKLR-GEIPHEIGYLPNLENLVL---------------------------------GFNNLVGVVPAAIFNMSTVKKIYL  298 (827)
Q Consensus       253 N~l~-~~~p~~~~~l~~L~~L~L---------------------------------s~N~l~~~~p~~~~~l~~L~~L~l  298 (827)
                      |.++ +..|..++++++|+.+++                                 ..|.+++.+|. +..+++|+.|++
T Consensus       214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l  292 (606)
T 3vq2_A          214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSL  292 (606)
T ss_dssp             CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEE
T ss_pred             CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEe
Confidence            9987 466778888888887776                                 66777777777 889999999999


Q ss_pred             cCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcc
Q 047196          299 LDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNL  378 (827)
Q Consensus       299 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~  378 (827)
                      ++|.+. .+| .+. .+++|+.|++++|++ +.+|. + .+++|+.|++++|...+.++                 +..+
T Consensus       293 ~~~~~~-~l~-~l~-~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~-----------------~~~l  349 (606)
T 3vq2_A          293 AGVSIK-YLE-DVP-KHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFK-----------------KVAL  349 (606)
T ss_dssp             ESCCCC-CCC-CCC-TTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECC-----------------CCCC
T ss_pred             cCccch-hhh-hcc-ccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchh-----------------hccC
Confidence            999985 455 333 788999999999999 78884 4 99999999999996654432                 2233


Q ss_pred             cccccEEEccCCcCccc--cCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCC-cccccccccc
Q 047196          379 SMSLENIYISNCNIGGS--IPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP-DQLCHLARLN  455 (827)
Q Consensus       379 ~~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~  455 (827)
                      + +|++|++++|++++.  +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+.++++|+
T Consensus       350 ~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          350 P-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             T-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             C-CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence            3 899999999999976  48899999999999999999986 66889999999999999999998888 6899999999


Q ss_pred             EEecCCCcccccCCccccCCCCCCccccCCCcccc-cCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccc
Q 047196          456 TLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS-VLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRN  534 (827)
Q Consensus       456 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N  534 (827)
                      .|++++|++++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|+|++|++++.+|..++.++.|+.|++++|
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence            99999999999999999999999999999999998 57999999999999999999999999999999999999999999


Q ss_pred             eeeecccccccCCCCCCEEECCCCcceeecCCCCc----CCceEeCcCCcCeecCCC
Q 047196          535 NFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG----YLTELNLSFNKLEGEIPR  587 (827)
Q Consensus       535 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~----~L~~L~ls~N~l~g~ip~  587 (827)
                      ++++.+|..++++++|+.|||++|+++. +|..+.    +|+.|++++|++.+..+.
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999994 565443    599999999999986664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.2e-50  Score=470.47  Aligned_cols=478  Identities=20%  Similarity=0.206  Sum_probs=306.3

Q ss_pred             CCcccceecCCCC-----------CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEe
Q 047196           85 VCNWIGITCNVNS-----------HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDF  153 (827)
Q Consensus        85 ~C~W~gv~C~~~~-----------~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdL  153 (827)
                      .|.|.|| |+...           .+++.|+|++|.+++..|.+|.++++|++|+|++|++++..|.+|.++++|++|||
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4899998 86431           24555566665555555555555666666666666555555555555566666666


Q ss_pred             cCCCCCCccccccCCCCCCcEEEcCCCCCCC-CcchhHhhccccccEEEeecccccccCC-ccCCCCCCCcEEEccCCCC
Q 047196          154 SDNQLSGSLSSVTFNLSSVLDIRLDSDKLSG-ELPVNICNYLHYLKVLFLAKNMFHGQIP-LALSKCKRLQLLNLGFKKL  231 (827)
Q Consensus       154 s~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g-~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l  231 (827)
                      ++|++++..|..+.++++|++|++++|.+++ .+|..+.. +++|++|++++|.+.+.+| ..+.++++|++|++++|.+
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            6666555555555555555555555555553 23333322 3355555555555333333 3555555555555555555


Q ss_pred             cccCCCcCcCCccccEEEccccccccccccc-ccCcCCCcEEEeecccCcccC--ch-hhhcCCCccEEEecCCcccccc
Q 047196          232 SGAIPKEISNLTILRKISLRNNKLRGEIPHE-IGYLPNLENLVLGFNNLVGVV--PA-AIFNMSTVKKIYLLDNSLLGSF  307 (827)
Q Consensus       232 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~--p~-~~~~l~~L~~L~l~~n~l~~~~  307 (827)
                      ++.+|..++++++|++|++++|.+. .+|.. +..+++|++|++++|++++..  |. ....+++|+.|++++|.+.+..
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            5555555555555555555555554 23332 234555555555555555431  11 1123445555555555554433


Q ss_pred             Chhhh---cCCCCccEEeCcCCcccccc------CccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcc
Q 047196          308 SLGID---LSLPNVERLNLGLNRFSGTI------PSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNL  378 (827)
Q Consensus       308 ~~~~~---~~l~~L~~L~L~~N~l~~~~------p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~  378 (827)
                      +..+.   ..+++|+.+++++|.+.+..      ...+..+.+|+.|++.++.+.....          ...++... ..
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----------~~~l~~~~-~~  308 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL----------FYDLSTVY-SL  308 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG----------SCCCCHHH-HH
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh----------cccchhhh-hh
Confidence            32221   13445555555555554421      1123344555555555554322100          00111111 22


Q ss_pred             cccccEEEccCCcCccccCccc-cCCCCCceEeccCccccccccc---cccCCCCCcEEECCCCCCCCCCC--ccccccc
Q 047196          379 SMSLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGNKLTGSIPV---TFGRLQKLQGLYLPFNKLAGSIP--DQLCHLA  452 (827)
Q Consensus       379 ~~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~l~  452 (827)
                      ..+|+.|++++|+++ .+|..+ ..+++|++|++++|++++.+|.   .++.+++|++|+|++|++++..+  ..+..++
T Consensus       309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            237999999999987 566655 5799999999999999987753   47889999999999999986533  4588899


Q ss_pred             cccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcc
Q 047196          453 RLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLS  532 (827)
Q Consensus       453 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls  532 (827)
                      +|++|++++|+++ .+|..+..+++|++|++++|.+++. |..+  .++|++|||++|++++.+    +.++.|+.|+++
T Consensus       388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls  459 (549)
T 2z81_A          388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYIS  459 (549)
T ss_dssp             TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence            9999999999998 6888899999999999999998853 4333  258899999999999854    578899999999


Q ss_pred             cceeeecccccccCCCCCCEEECCCCcceeecCCCC---cCCceEeCcCCcCeecCCC
Q 047196          533 RNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNLSFNKLEGEIPR  587 (827)
Q Consensus       533 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~L~~L~ls~N~l~g~ip~  587 (827)
                      +|+|+ .+|. .+.+++|+.|||++|++++.+|..+   .+|+.|++++|+++|..|.
T Consensus       460 ~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             SSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             CCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            99998 6776 5678999999999999999888765   4789999999999887773

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-49  Score=486.92  Aligned_cols=461  Identities=20%  Similarity=0.187  Sum_probs=393.8

Q ss_pred             CcEEEEEcCCCCCcccc-CccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccc--cCCCCCCcE
Q 047196           98 HRVTALNISSLNLQGTI-PPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSV--TFNLSSVLD  174 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~-~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~--~~~l~~L~~  174 (827)
                      .+++.|||++|...+.+ |.+|.++++|++|+|++|.+++..|.+|.++++|++|||++|.+++.+|..  +.++++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            57899999999777777 678999999999999999999999999999999999999999999877665  889999999


Q ss_pred             EEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCC--CCCcEEEccCCCCcccCCCcCcCCcc------cc
Q 047196          175 IRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC--KRLQLLNLGFKKLSGAIPKEISNLTI------LR  246 (827)
Q Consensus       175 L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~------L~  246 (827)
                      |+|++|.+++..|...+..+++|++|+|++|.+++..|..+..+  ++|+.|+++.|.+++..|..++.+.+      |+
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~  207 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE  207 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence            99999999987665555556699999999999999999999888  89999999999999999888877766      99


Q ss_pred             EEEcccccccccccccccCc--------------------------------------CCCcEEEeecccCcccCchhhh
Q 047196          247 KISLRNNKLRGEIPHEIGYL--------------------------------------PNLENLVLGFNNLVGVVPAAIF  288 (827)
Q Consensus       247 ~L~Ls~N~l~~~~p~~~~~l--------------------------------------~~L~~L~Ls~N~l~~~~p~~~~  288 (827)
                      +|++++|.+++..|..+...                                      ++|++|+|++|.+++..|..+.
T Consensus       208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~  287 (844)
T 3j0a_A          208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE  287 (844)
T ss_dssp             EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred             EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence            99999998887776655422                                      5788888888888888888888


Q ss_pred             cCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCc
Q 047196          289 NMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLD  368 (827)
Q Consensus       289 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~  368 (827)
                      .+++|+.|++++|.+.+..+..+. .+++|++|+|++|++++..|..+..+++|+.|++++|.+++..+           
T Consensus       288 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-----------  355 (844)
T 3j0a_A          288 TLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD-----------  355 (844)
T ss_dssp             SCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS-----------
T ss_pred             cCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh-----------
Confidence            888888888888888776665554 77888888888888888778888888888888888888765443           


Q ss_pred             ccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCC-Ccc
Q 047196          369 GVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSI-PDQ  447 (827)
Q Consensus       369 g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~  447 (827)
                          ..+..++ +|++|++++|.+++.     ..+++|+.|++++|+++. +|..   ..+++.|++++|++++.. +..
T Consensus       356 ----~~~~~l~-~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~  421 (844)
T 3j0a_A          356 ----QTFKFLE-KLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYF  421 (844)
T ss_dssp             ----SCSCSCC-CCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHH
T ss_pred             ----hhhcCCC-CCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhh
Confidence                2344444 899999999999853     237899999999999984 4543   568999999999998643 234


Q ss_pred             ccccccccEEecCCCcccccCCc-cccCCCCCCccccCCCccc-----ccCCccccccccccccCCCCCCCCCCCccccc
Q 047196          448 LCHLARLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLT-----SVLPSTFWNLKDILFFDLSSNSLDGPLSLDIG  521 (827)
Q Consensus       448 ~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~  521 (827)
                      +.++++|+.|+|++|++++..+. .+..+++|+.|+|++|.++     +..|..|.++++|+.|||++|++++.+|..+.
T Consensus       422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  501 (844)
T 3j0a_A          422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS  501 (844)
T ss_dssp             HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred             hhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHcc
Confidence            56899999999999999975543 4567899999999999997     45567789999999999999999999999999


Q ss_pred             ccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCCcCCceEeCcCCcCeecCC
Q 047196          522 NLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIP  586 (827)
Q Consensus       522 ~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~L~~L~ls~N~l~g~ip  586 (827)
                      .++.|+.|+|++|+|++..|..+.  ++|+.|||++|++++.+|..|.+|+.|++++|.+.+..+
T Consensus       502 ~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          502 HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSS
T ss_pred             chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccc
Confidence            999999999999999988777776  899999999999999999999999999999999987665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-49  Score=465.19  Aligned_cols=464  Identities=20%  Similarity=0.195  Sum_probs=358.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      .+++.|||++|.+++..+.+|.++++|++|||++|++++..|..|.++++|++|+|++|++++..|..+.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            47899999999999988889999999999999999999888888999999999999999999888889999999999999


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccc-cCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccc----cEEEccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTIL----RKISLRN  252 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L----~~L~Ls~  252 (827)
                      ++|.+++ +|...+..+++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..++.+++|    +.|++++
T Consensus       108 ~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             ccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            9999985 444223445699999999999987 579999999999999999999998888889888888    8999999


Q ss_pred             ccccccccccccCcCCCcEEEeecccCcc-cCchhhhcCCCccE--------------------------------EEec
Q 047196          253 NKLRGEIPHEIGYLPNLENLVLGFNNLVG-VVPAAIFNMSTVKK--------------------------------IYLL  299 (827)
Q Consensus       253 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~--------------------------------L~l~  299 (827)
                      |.+++..|..+..+ +|++|++++|.... .+|..+.+++.++.                                +++.
T Consensus       187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            99998888777766 79999999885432 23344444444443                                3333


Q ss_pred             CC-ccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcc
Q 047196          300 DN-SLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNL  378 (827)
Q Consensus       300 ~n-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~  378 (827)
                      .+ .+.+.++..+. .+++|+.|++++|+++ .+|..+..+ +|+.|++++|.+. .               +|.  ..+
T Consensus       266 ~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~---------------l~~--~~l  324 (570)
T 2z63_A          266 YLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-Q---------------FPT--LKL  324 (570)
T ss_dssp             ETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-S---------------CCB--CBC
T ss_pred             cchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-c---------------cCc--ccc
Confidence            33 33333443333 4566677777776666 356666666 6777777666654 2               222  122


Q ss_pred             cccccEEEccCCcCccccCccccCCCCCceEeccCccccccc--cccccCCCCCcEEECCCCCCCCCCCccccccccccE
Q 047196          379 SMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSI--PVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNT  456 (827)
Q Consensus       379 ~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~--p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  456 (827)
                      + +|+.|++++|.+.+.++.  ..+++|+.|++++|++++..  |..+..+++|++|++++|.+.+..+ .+..+++|+.
T Consensus       325 ~-~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~  400 (570)
T 2z63_A          325 K-SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEH  400 (570)
T ss_dssp             S-SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCE
T ss_pred             c-ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCE
Confidence            2 678888888887776665  66788888888888887654  6677788888888888888875443 3777888888


Q ss_pred             EecCCCcccccCC-ccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCC-CCCcccccccccCceEEcccc
Q 047196          457 LGLAGNKFSGSIP-SCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD-GPLSLDIGNLRVVIGINLSRN  534 (827)
Q Consensus       457 L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-g~~p~~~~~l~~L~~L~Ls~N  534 (827)
                      |++++|++++..| ..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.++ +.+|..++.++.|+.|++++|
T Consensus       401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            8888888877665 46777888888888888888888888888888888888888887 567778888888888888888


Q ss_pred             eeeecccccccCCCCCCEEECCCCcceeecCCCC---cCCceEeCcCCcCeecCCCC
Q 047196          535 NFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNLSFNKLEGEIPRG  588 (827)
Q Consensus       535 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~L~~L~ls~N~l~g~ip~~  588 (827)
                      ++++..|..++++++|+.|++++|++++.+|..+   .+|+.|++++|+++|.+|..
T Consensus       481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            8888778888888888888888888888777655   36778888888888777753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-48  Score=452.79  Aligned_cols=478  Identities=21%  Similarity=0.258  Sum_probs=405.9

Q ss_pred             EEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCC
Q 047196          103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKL  182 (827)
Q Consensus       103 L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l  182 (827)
                      ++-++.+++ .+|..+.  +++++|||++|++++..+.+|.++++|++|||++|++++..|..+.++++|++|+|++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l   88 (570)
T 2z63_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (570)
T ss_dssp             EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence            344444554 3455443  5799999999999988888999999999999999999998888999999999999999999


Q ss_pred             CCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcc-cCCCcCcCCccccEEEcccccccccccc
Q 047196          183 SGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSG-AIPKEISNLTILRKISLRNNKLRGEIPH  261 (827)
Q Consensus       183 ~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  261 (827)
                      ++ +|+..+..+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..|.
T Consensus        89 ~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CE-ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             Cc-cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            86 444444446699999999999998777789999999999999999987 5799999999999999999999988889


Q ss_pred             cccCcCCC----cEEEeecccCcccCchhhhcCCCccEEEecCCccccc-cChhhhcCCC--------------------
Q 047196          262 EIGYLPNL----ENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGS-FSLGIDLSLP--------------------  316 (827)
Q Consensus       262 ~~~~l~~L----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~--------------------  316 (827)
                      .++.+++|    +.|++++|.+++..|..+... +|+.|++++|..... ++..+ ..++                    
T Consensus       168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~-~~l~~l~~~~l~~~~~~~~~~l~~  245 (570)
T 2z63_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI-QGLAGLEVHRLVLGEFRNEGNLEK  245 (570)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHH-HTTTTCEEEEEEEEECCCCSSCEE
T ss_pred             HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhh-cCccccceeeeccccccCchhhhh
Confidence            99999999    899999999999888877665 899999998843221 11111 0111                    


Q ss_pred             ------------CccEEeCcCC-ccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhccccccc
Q 047196          317 ------------NVERLNLGLN-RFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLE  383 (827)
Q Consensus       317 ------------~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~  383 (827)
                                  .++.++++.+ .+.+.+|..+..+++|+.|++++|.+++                +|..+...  +|+
T Consensus       246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~----------------l~~~~~~~--~L~  307 (570)
T 2z63_A          246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER----------------VKDFSYNF--GWQ  307 (570)
T ss_dssp             CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS----------------CCBCCSCC--CCS
T ss_pred             cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh----------------hhhhhccC--Ccc
Confidence                        2456666666 7778888899999999999999998863                33344444  799


Q ss_pred             EEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCC--CccccccccccEEecCC
Q 047196          384 NIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSI--PDQLCHLARLNTLGLAG  461 (827)
Q Consensus       384 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~--p~~~~~l~~L~~L~Ls~  461 (827)
                      +|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|+.|++++|++++..  |..+.++++|++|++++
T Consensus       308 ~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~  382 (570)
T 2z63_A          308 HLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF  382 (570)
T ss_dssp             EEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred             EEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence            9999999998 6665  4789999999999999887765  78999999999999998654  77888999999999999


Q ss_pred             CcccccCCccccCCCCCCccccCCCcccccCC-ccccccccccccCCCCCCCCCCCcccccccccCceEEcccceee-ec
Q 047196          462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLP-STFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFS-GD  539 (827)
Q Consensus       462 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~  539 (827)
                      |++++..+. +..+++|+.|++++|.+.+..| ..+.++++|++|++++|.+++.+|..+..++.|+.|++++|+++ +.
T Consensus       383 n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  461 (570)
T 2z63_A          383 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  461 (570)
T ss_dssp             CSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Ccccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence            999965554 9999999999999999998877 57899999999999999999999999999999999999999998 68


Q ss_pred             ccccccCCCCCCEEECCCCcceeecCCCCc---CCceEeCcCCcCeecCCCC-CCCCCCcccccccCccccCCCC
Q 047196          540 IPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRG-GPFANFTAKSFMGNEKLCGLPN  610 (827)
Q Consensus       540 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~p~  610 (827)
                      +|..++.+++|+.|++++|++++.+|..+.   +|++|++++|++++.+|.. ..+..+....+.+|+..|.+|.
T Consensus       462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999999999999999999998765   7999999999999877753 4566777788899998887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.9e-49  Score=470.87  Aligned_cols=436  Identities=20%  Similarity=0.223  Sum_probs=355.5

Q ss_pred             CCCCEEECCCCCCCccCChhhhhccccceEEe-cCCCCCCccccccCCC----CCCc--EEE----------cCCCCCCC
Q 047196          122 SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDF-SDNQLSGSLSSVTFNL----SSVL--DIR----------LDSDKLSG  184 (827)
Q Consensus       122 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdL-s~N~l~g~~p~~~~~l----~~L~--~L~----------L~~n~l~g  184 (827)
                      .+++.|+|++|+++|.+|+++++|++|++||| ++|.++|..|......    +..+  .++          .....+++
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57899999999999999999999999999999 9999988744332111    0000  000          00001111


Q ss_pred             CcchhHh----------hccccccEEEee--cccccccCCccCCCCCCCcEEEccCCCCcc-----------------cC
Q 047196          185 ELPVNIC----------NYLHYLKVLFLA--KNMFHGQIPLALSKCKRLQLLNLGFKKLSG-----------------AI  235 (827)
Q Consensus       185 ~ip~~~~----------~~~~~L~~L~Ls--~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~  235 (827)
                      .++..+.          .....++.+.+.  .|.+++ +|..++++++|++|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            1111111          001134444444  488888 89999999999999999999998                 49


Q ss_pred             CCcCc--CCccccEEEcccccccccccccccCcCCCcEEEeeccc-Ccc-cCchhhhcCC-------CccEEEecCCccc
Q 047196          236 PKEIS--NLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN-LVG-VVPAAIFNMS-------TVKKIYLLDNSLL  304 (827)
Q Consensus       236 p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~l~~n~l~  304 (827)
                      |..++  ++++|++|+|++|++.+.+|..++++++|++|+|++|+ ++| .+|..+.+++       +|+.|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            99988  99999999999999999999999999999999999998 999 8999888776       9999999999999


Q ss_pred             cccCh--hhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhccccc-
Q 047196          305 GSFSL--GIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMS-  381 (827)
Q Consensus       305 ~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~-  381 (827)
                       .+|.  .+. .+++|+.|+|++|+++ .+| .+..+++|+.|++++|.++ .               +|..+..+. + 
T Consensus       562 -~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~---------------lp~~l~~l~-~~  620 (876)
T 4ecn_A          562 -EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-E---------------IPEDFCAFT-DQ  620 (876)
T ss_dssp             -BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-C---------------CCTTSCEEC-TT
T ss_pred             -ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-c---------------chHHHhhcc-cc
Confidence             8887  555 8999999999999999 888 8999999999999999987 3               344556665 5 


Q ss_pred             ccEEEccCCcCccccCccccCCCC--CceEeccCccccccccccc---c--CCCCCcEEECCCCCCCCCCCccc-ccccc
Q 047196          382 LENIYISNCNIGGSIPQLISNLSN--LLLLDLEGNKLTGSIPVTF---G--RLQKLQGLYLPFNKLAGSIPDQL-CHLAR  453 (827)
Q Consensus       382 L~~L~Ls~N~l~g~~p~~~~~l~~--L~~L~Ls~N~l~g~~p~~~---~--~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~  453 (827)
                      |+.|+|++|+++ .+|..+..++.  |+.|+|++|+++|.+|...   .  .+++|+.|+|++|+++ .+|..+ ..+++
T Consensus       621 L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~  698 (876)
T 4ecn_A          621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSP  698 (876)
T ss_dssp             CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCC
T ss_pred             CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCC
Confidence            999999999999 78988887765  9999999999999876433   2  3458999999999999 667665 47899


Q ss_pred             ccEEecCCCcccccCCccccCC--------CCCCccccCCCcccccCCcccc--ccccccccCCCCCCCCCCCccccccc
Q 047196          454 LNTLGLAGNKFSGSIPSCLGNL--------TSLRSPDLGSNRLTSVLPSTFW--NLKDILFFDLSSNSLDGPLSLDIGNL  523 (827)
Q Consensus       454 L~~L~Ls~N~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~LdLs~N~l~g~~p~~~~~l  523 (827)
                      |+.|+|++|+++ .+|..+...        ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..++.+
T Consensus       699 L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L  775 (876)
T 4ecn_A          699 ISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS  775 (876)
T ss_dssp             CSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             CCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence            999999999999 777765443        38999999999999 6788887  89999999999999998 78888899


Q ss_pred             ccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCCc---CCceEeCcCCcCeecCCCCCCCCCCcccccc
Q 047196          524 RVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRGGPFANFTAKSFM  600 (827)
Q Consensus       524 ~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~  600 (827)
                      ++|+.|+|++|+                  ++++|++.+.+|..+.   +|+.|++++|++ +.||.. .+..+....+.
T Consensus       776 ~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs  835 (876)
T 4ecn_A          776 SQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIA  835 (876)
T ss_dssp             TTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECC
T ss_pred             CCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECC
Confidence            999999999988                  7889999999998775   789999999999 899986 34566667777


Q ss_pred             cCcc
Q 047196          601 GNEK  604 (827)
Q Consensus       601 ~n~~  604 (827)
                      +|+.
T Consensus       836 ~N~l  839 (876)
T 4ecn_A          836 DNPN  839 (876)
T ss_dssp             SCTT
T ss_pred             CCCC
Confidence            7753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.5e-49  Score=467.91  Aligned_cols=492  Identities=20%  Similarity=0.246  Sum_probs=388.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCCcCCCCCCCCC---CCCcccc-eecCCC--CCcEEEEEcCCCCCccccCccccCCCCCC
Q 047196           52 NITTDQQALLALKAHISYDPTNLLAQNSTSNT---SVCNWIG-ITCNVN--SHRVTALNISSLNLQGTIPPQLGNLSSLT  125 (827)
Q Consensus        52 ~~~~~~~aLl~~k~~~~~~~~~~l~~w~~~~~---~~C~W~g-v~C~~~--~~~v~~L~L~~~~l~g~~~~~l~~L~~L~  125 (827)
                      ....+.+.-.++++-...-  + -..|...+.   ..|.|.. ..|+..  ...|+.   ..         .    .+++
T Consensus        24 ~~~~~~~d~~aL~~~~~~~--~-~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C---~~---------~----~~V~   84 (636)
T 4eco_A           24 RTAEYIKDYLALKEIWDAL--N-GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSL---NS---------N----GRVT   84 (636)
T ss_dssp             CCCHHHHHHHHHHHHHHHT--T-GGGCCCCC------CCCCCSSCGGGTTCCTTEEE---CT---------T----CCEE
T ss_pred             hhhhHHHHHHHHHHHHHHc--C-CCCcccCCcCCccCCCCCCCCCcccccCCCCeEE---cC---------C----CCEE
Confidence            3445556677777665221  1 235763332   2358963 333322  134553   00         0    4788


Q ss_pred             EEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecc
Q 047196          126 TLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKN  205 (827)
Q Consensus       126 ~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N  205 (827)
                      .|+|++|+++|.+|+++++|++|++|||++|.+.... ..++..           .+...+|...   ...|+ ++++.|
T Consensus        85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~-----------~~~~~~~~~~---~~~l~-l~l~~~  148 (636)
T 4eco_A           85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE-RLFGPK-----------GISANMSDEQ---KQKMR-MHYQKT  148 (636)
T ss_dssp             EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTC-CSBSTT-----------SBCTTCCHHH---HHHHH-THHHHH
T ss_pred             EEEecCcccCCcCChHHhcCccceEEECcCCccccCC-cccccc-----------ccccCchHHH---HHHHH-hhHHHh
Confidence            9999999999999999999999999999999872110 000000           0001234433   12344 555555


Q ss_pred             cccccCCccCC-------------------CCCCCcEEEcc--CCCCcccCCCcCcCCccccEEEccccccccc------
Q 047196          206 MFHGQIPLALS-------------------KCKRLQLLNLG--FKKLSGAIPKEISNLTILRKISLRNNKLRGE------  258 (827)
Q Consensus       206 ~l~~~~p~~l~-------------------~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------  258 (827)
                      .+.+.+|..+.                   ....++.+.++  .|+++| +|.+++++++|++|+|++|+++|.      
T Consensus       149 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  227 (636)
T 4eco_A          149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW  227 (636)
T ss_dssp             HTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             hhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccc
Confidence            55555544443                   12233333333  588999 999999999999999999999986      


Q ss_pred             -----------cccccc--CcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCc-ccc-ccChhhhcCC------CC
Q 047196          259 -----------IPHEIG--YLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNS-LLG-SFSLGIDLSL------PN  317 (827)
Q Consensus       259 -----------~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~l------~~  317 (827)
                                 +|..++  ++++|++|+|++|++.+.+|..+.++++|+.|++++|. ++| .+|..+. .+      ++
T Consensus       228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~  306 (636)
T 4eco_A          228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEK  306 (636)
T ss_dssp             SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGT
T ss_pred             cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCC
Confidence                       999999  99999999999999999999999999999999999998 998 8888776 44      89


Q ss_pred             ccEEeCcCCccccccCc--cccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccc
Q 047196          318 VERLNLGLNRFSGTIPS--FITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGS  395 (827)
Q Consensus       318 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~  395 (827)
                      |++|++++|+++ .+|.  .++++++|+.|++++|+++|.+|                .+..+. +|++|++++|+++ .
T Consensus       307 L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----------------~~~~l~-~L~~L~L~~N~l~-~  367 (636)
T 4eco_A          307 IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP----------------AFGSEI-KLASLNLAYNQIT-E  367 (636)
T ss_dssp             CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC----------------CCEEEE-EESEEECCSSEEE-E
T ss_pred             CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh----------------hhCCCC-CCCEEECCCCccc-c
Confidence            999999999999 8998  99999999999999999987766                233444 8999999999999 8


Q ss_pred             cCccccCCCC-CceEeccCccccccccccccCCC--CCcEEECCCCCCCCCCCcccc-------ccccccEEecCCCccc
Q 047196          396 IPQLISNLSN-LLLLDLEGNKLTGSIPVTFGRLQ--KLQGLYLPFNKLAGSIPDQLC-------HLARLNTLGLAGNKFS  465 (827)
Q Consensus       396 ~p~~~~~l~~-L~~L~Ls~N~l~g~~p~~~~~l~--~L~~L~Ls~N~l~g~~p~~~~-------~l~~L~~L~Ls~N~l~  465 (827)
                      +|..+..+++ |+.|++++|+++ .+|..+..++  +|+.|++++|++++.+|..+.       .+++|+.|++++|+++
T Consensus       368 lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~  446 (636)
T 4eco_A          368 IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS  446 (636)
T ss_dssp             CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred             ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence            8999999999 999999999999 7888887765  999999999999999999988       8889999999999999


Q ss_pred             ccCCcc-ccCCCCCCccccCCCcccccCCcc-cccc-------ccccccCCCCCCCCCCCccccc--ccccCceEEcccc
Q 047196          466 GSIPSC-LGNLTSLRSPDLGSNRLTSVLPST-FWNL-------KDILFFDLSSNSLDGPLSLDIG--NLRVVIGINLSRN  534 (827)
Q Consensus       466 ~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l-------~~L~~LdLs~N~l~g~~p~~~~--~l~~L~~L~Ls~N  534 (827)
                       .+|.. +..+++|++|+|++|.++ .+|.. +...       ++|+.|+|++|+++ .+|..+.  .++.|+.|+|++|
T Consensus       447 -~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N  523 (636)
T 4eco_A          447 -KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYN  523 (636)
T ss_dssp             -SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSS
T ss_pred             -cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCC
Confidence             56654 556999999999999999 45544 4333       39999999999999 7888887  9999999999999


Q ss_pred             eeeecccccccCCCCCCEEEC------CCCcceeecCCCCc---CCceEeCcCCcCeecCCCCCCCCCCcccccccCccc
Q 047196          535 NFSGDIPSTIGDLKDLQNISL------ACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKL  605 (827)
Q Consensus       535 ~l~g~ip~~~~~l~~L~~L~L------s~N~l~g~ip~~~~---~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~l  605 (827)
                      +|++ +|..++++++|+.|+|      ++|++.+.+|..+.   +|+.|++++|++ +.||.. .+..+....+.+|+..
T Consensus       524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTC
T ss_pred             CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCc
Confidence            9998 9999999999999999      56889999998775   789999999999 899976 3367777778888766


Q ss_pred             c
Q 047196          606 C  606 (827)
Q Consensus       606 c  606 (827)
                      |
T Consensus       601 ~  601 (636)
T 4eco_A          601 S  601 (636)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8e-48  Score=448.81  Aligned_cols=490  Identities=19%  Similarity=0.228  Sum_probs=401.2

Q ss_pred             ecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCC
Q 047196           92 TCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSS  171 (827)
Q Consensus        92 ~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~  171 (827)
                      .|...  .|  .|.++++++ .+|+.+.  ++|++|||++|++++..|.+|.++++|++|+|++|++++..|..+.++++
T Consensus         3 ~C~~~--~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   75 (549)
T 2z81_A            3 SCDAS--GV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS   75 (549)
T ss_dssp             EECTT--SE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCC--ce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence            57542  34  689999998 4566554  79999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEcCCCCCCCCcchhHhhccccccEEEeecccccc-cCCccCCCCCCCcEEEccCCCCcccCC-CcCcCCccccEEE
Q 047196          172 VLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKCKRLQLLNLGFKKLSGAIP-KEISNLTILRKIS  249 (827)
Q Consensus       172 L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~  249 (827)
                      |++|+|++|.+++..|..+.. +++|++|++++|.+++ .+|..++++++|++|++++|.+.+.+| ..++++++|++|+
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGP-LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE  154 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTT-CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCEEECCCCccCccCHHHhcc-CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence            999999999999755554554 5699999999999987 467899999999999999999555555 6899999999999


Q ss_pred             cccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCcccccc--ChhhhcCCCCccEEeCcCCc
Q 047196          250 LRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSF--SLGIDLSLPNVERLNLGLNR  327 (827)
Q Consensus       250 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~L~~N~  327 (827)
                      +++|++++..|..++.+++|++|+++.|.+....+..+..+++|+.|++++|.+.+..  +..+...+++|+.|++++|+
T Consensus       155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            9999999999999999999999999999986543334457999999999999998742  22333457899999999999


Q ss_pred             cccccC----ccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccc-----cCc
Q 047196          328 FSGTIP----SFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGS-----IPQ  398 (827)
Q Consensus       328 l~~~~p----~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~-----~p~  398 (827)
                      +++..+    ..+..+++|+.+++++|.+.+...-..      .   ....+..+. +++.|++.++.+...     ++.
T Consensus       235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~------~---~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~l~~  304 (549)
T 2z81_A          235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP------S---ESDVVSELG-KVETVTIRRLHIPQFYLFYDLST  304 (549)
T ss_dssp             EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC------C---TTTCCCCCT-TCCEEEEESCBCSCGGGSCCCCH
T ss_pred             cchhHHHHHHHHhhhhccccccccccccccccccccc------c---chhhhhhhc-ccccccccccccchhhhcccchh
Confidence            987544    345678999999999999887422100      0   001122333 789999999887642     233


Q ss_pred             cccCCCCCceEeccCccccccccccc-cCCCCCcEEECCCCCCCCCCCc---cccccccccEEecCCCcccccCC--ccc
Q 047196          399 LISNLSNLLLLDLEGNKLTGSIPVTF-GRLQKLQGLYLPFNKLAGSIPD---QLCHLARLNTLGLAGNKFSGSIP--SCL  472 (827)
Q Consensus       399 ~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~Ls~N~l~~~~p--~~~  472 (827)
                      .+....+|+.|++++|++. .+|..+ ..+++|++|++++|++++.+|.   .+..+++|++|++++|++++..+  ..+
T Consensus       305 ~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  383 (549)
T 2z81_A          305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL  383 (549)
T ss_dssp             HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred             hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence            3445678999999999997 566665 6899999999999999987753   47889999999999999986533  458


Q ss_pred             cCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCE
Q 047196          473 GNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQN  552 (827)
Q Consensus       473 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~  552 (827)
                      ..+++|++||+++|+++ .+|..+..+++|++|++++|.+++ +|..+  .+.|+.|++++|+|++.+    +.+++|+.
T Consensus       384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~  455 (549)
T 2z81_A          384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQE  455 (549)
T ss_dssp             GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCE
T ss_pred             hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcE
Confidence            89999999999999999 578889999999999999999985 34333  268999999999999753    57899999


Q ss_pred             EECCCCcceeecCCC--CcCCceEeCcCCcCeecCCCC-CCCCCCcccccccCccccCCC
Q 047196          553 ISLACNGLEGLIPES--FGYLTELNLSFNKLEGEIPRG-GPFANFTAKSFMGNEKLCGLP  609 (827)
Q Consensus       553 L~Ls~N~l~g~ip~~--~~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~p  609 (827)
                      |+|++|+++ .+|..  +.+|++||+++|++++.+|.. ..+..+....+.+|+..|.+|
T Consensus       456 L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          456 LYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             EECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999999998 56653  458999999999999987763 456677778889999888653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2e-48  Score=450.73  Aligned_cols=455  Identities=20%  Similarity=0.217  Sum_probs=370.3

Q ss_pred             EEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCC
Q 047196          101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSD  180 (827)
Q Consensus       101 ~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n  180 (827)
                      +.||+++|+++ .+|..+.  ++|++|||++|++++..|..|.++++|++|||++|++++..|..+.++++|++|+|++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            46899999999 4777666  89999999999999888889999999999999999999998999999999999999999


Q ss_pred             CCCCCcchhHhhccccccEEEeecccccc-cCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccc--cEEEcccccc--
Q 047196          181 KLSGELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTIL--RKISLRNNKL--  255 (827)
Q Consensus       181 ~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~Ls~N~l--  255 (827)
                      +++ .+|..   .+++|++|+|++|.+++ .+|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            998 68876   46699999999999987 578899999999999999999886   356777777  9999999999  


Q ss_pred             cccccccccCcC-CCcEEEeecccCcccCch-hhhcCCCccEEEecCCc-------cccccChhhhcCCCCccEEeCcCC
Q 047196          256 RGEIPHEIGYLP-NLENLVLGFNNLVGVVPA-AIFNMSTVKKIYLLDNS-------LLGSFSLGIDLSLPNVERLNLGLN  326 (827)
Q Consensus       256 ~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~L~~N  326 (827)
                      .+..|..+..++ +...+++++|++.+.++. .+.++++|+.+++++|.       +.+.++ .+. .+++|+.|++++|
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~  230 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ-TNPKLSNLTLNNI  230 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG-GCTTCCEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhc-cccchhhcccccc
Confidence            788888887766 344677888888776654 56778889999998887       666555 333 6888999999888


Q ss_pred             ccccccCcccc---CCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccC-ccccC
Q 047196          327 RFSGTIPSFIT---NASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIP-QLISN  402 (827)
Q Consensus       327 ~l~~~~p~~~~---~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p-~~~~~  402 (827)
                      .+++..+..+.   ..++|++|++++|+++|.+|..+...          ....+. +|+.+++++|.+  .+| ..+..
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~----------~~~~l~-~L~~l~l~~n~~--~~p~~~~~~  297 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY----------SGTSLK-ALSIHQVVSDVF--GFPQSYIYE  297 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC----------CSCCCC-EEEEEEEEECCC--CSCTHHHHH
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc----------ccccCc-eeEeccccccce--ecchhhhhc
Confidence            88764332221   24588999999988887766533100          003343 788899999998  555 45554


Q ss_pred             C---CCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccc--cCCccccCCCC
Q 047196          403 L---SNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSG--SIPSCLGNLTS  477 (827)
Q Consensus       403 l---~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~  477 (827)
                      +   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..+.++++|++|++++|++++  .+|..+..+++
T Consensus       298 ~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~  375 (520)
T 2z7x_B          298 IFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS  375 (520)
T ss_dssp             HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred             ccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence            4   67999999999886432  12688999999999999999899999999999999999999986  56778899999


Q ss_pred             CCccccCCCcccccCCc-cccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECC
Q 047196          478 LRSPDLGSNRLTSVLPS-TFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLA  556 (827)
Q Consensus       478 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls  556 (827)
                      |++||+++|.+++.+|. .+..+++|+.|++++|.+++.+|..+.  +.|+.|++++|+|+ .+|..+..+++|+.|+|+
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence            99999999999985555 488889999999999999988887765  78999999999998 888888899999999999


Q ss_pred             CCcceeecCCC-C---cCCceEeCcCCcCeecCC
Q 047196          557 CNGLEGLIPES-F---GYLTELNLSFNKLEGEIP  586 (827)
Q Consensus       557 ~N~l~g~ip~~-~---~~L~~L~ls~N~l~g~ip  586 (827)
                      +|++++ +|.. +   .+|+.|++++|++++..+
T Consensus       453 ~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          453 SNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            999985 5543 4   478899999999987654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.6e-47  Score=436.64  Aligned_cols=452  Identities=17%  Similarity=0.200  Sum_probs=387.4

Q ss_pred             CEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeec
Q 047196          125 TTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAK  204 (827)
Q Consensus       125 ~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~  204 (827)
                      ++||+++|+++ .+|..+.  ++|++|||++|.+++..|..+.++++|++|+|++|++++..|..+.. +++|++|+|++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCC
Confidence            68999999999 6887776  89999999999999999999999999999999999999766666655 55999999999


Q ss_pred             ccccccCCccCCCCCCCcEEEccCCCCcc-cCCCcCcCCccccEEEcccccccccccccccCcCCC--cEEEeecccC--
Q 047196          205 NMFHGQIPLALSKCKRLQLLNLGFKKLSG-AIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNL--ENLVLGFNNL--  279 (827)
Q Consensus       205 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l--  279 (827)
                      |+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|++++   ..+..+++|  ++|++++|.+  
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            9998 56666  89999999999999998 578999999999999999999986   467778888  9999999999  


Q ss_pred             cccCchhhhcCC-CccEEEecCCccccccChhhhcCCCCccEEeCcCCc-------cccccCccccCCCCCcEEEcCCCc
Q 047196          280 VGVVPAAIFNMS-TVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNR-------FSGTIPSFITNASKLVYLDMGTNS  351 (827)
Q Consensus       280 ~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~p~~~~~l~~L~~L~Ls~N~  351 (827)
                      .+..|..+..+. ....+++++|.+.+.++......+++|+.|++++|.       +.+.+| .+..+++|+.|++++|.
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            888898888776 455778899999988887666689999999999998       888777 78999999999999998


Q ss_pred             ceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccc-----cCCCCCceEeccCcccccccc-cccc
Q 047196          352 FSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI-----SNLSNLLLLDLEGNKLTGSIP-VTFG  425 (827)
Q Consensus       352 l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~-----~~l~~L~~L~Ls~N~l~g~~p-~~~~  425 (827)
                      +++..+..          . +.... . .+|++|++++|+++|.+|..+     ..+++|+.+++++|.+  .+| ..+.
T Consensus       232 l~~~~~~~----------~-~~~~~-~-~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~  296 (520)
T 2z7x_B          232 TTWNSFIR----------I-LQLVW-H-TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY  296 (520)
T ss_dssp             EEHHHHHH----------H-HHHHH-T-SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH
T ss_pred             cCHHHHHH----------H-HHHhh-h-CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh
Confidence            87542211          0 11111 1 279999999999999999998     9999999999999999  455 4555


Q ss_pred             CC---CCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccc--cCCccccccc
Q 047196          426 RL---QKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS--VLPSTFWNLK  500 (827)
Q Consensus       426 ~l---~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~  500 (827)
                      .+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+..++
T Consensus       297 ~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~  374 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK  374 (520)
T ss_dssp             HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT
T ss_pred             cccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC
Confidence            44   68999999999987532  12678999999999999999999999999999999999999997  5678899999


Q ss_pred             cccccCCCCCCCCCCCccc-ccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCC---cCCceEeC
Q 047196          501 DILFFDLSSNSLDGPLSLD-IGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNL  576 (827)
Q Consensus       501 ~L~~LdLs~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~L~~L~l  576 (827)
                      +|+.||+++|.+++.+|.. +..++.|+.|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+   .+|++|++
T Consensus       375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L  451 (520)
T 2z7x_B          375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV  451 (520)
T ss_dssp             TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence            9999999999999977765 88899999999999999999998876  79999999999999 677644   58999999


Q ss_pred             cCCcCeecCCCC--CCCCCCcccccccCccccCC
Q 047196          577 SFNKLEGEIPRG--GPFANFTAKSFMGNEKLCGL  608 (827)
Q Consensus       577 s~N~l~g~ip~~--~~~~~~~~~~~~~n~~lc~~  608 (827)
                      ++|+++ .+|..  ..+..+....+.+|+..|.+
T Consensus       452 ~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          452 ASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence            999999 57764  34556667778899887753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.5e-44  Score=426.53  Aligned_cols=476  Identities=20%  Similarity=0.159  Sum_probs=255.7

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      .++.|||++|+|++..+.+|.++++|++|||++|+|++..|.+|.++++|++|||++|+|++..+..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            57788888888877777778888888888888888877767777888888888888888877666777788888888888


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccc-cCCccCCCCCCCcEEEccCCCCcccCCCcCcCCcccc----EEEcccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILR----KISLRNN  253 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~----~L~Ls~N  253 (827)
                      +|++++ +|...+..+++|++|+|++|.+++ .+|..++++++|++|++++|++++..|..+..+.+++    .++++.|
T Consensus       133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          133 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            887774 554444445578888888887765 4567777778888888888887777777766655443    5777777


Q ss_pred             cccccccccccCcCCCcEEEeecccCcccC-chhhhcCCCccEEEecCCcccccc------Chh----------------
Q 047196          254 KLRGEIPHEIGYLPNLENLVLGFNNLVGVV-PAAIFNMSTVKKIYLLDNSLLGSF------SLG----------------  310 (827)
Q Consensus       254 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~------~~~----------------  310 (827)
                      .++...+..+ ....++.+++..|.....+ +..+..+..++...+..+...+..      ...                
T Consensus       212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            7765444333 3445667777777655332 344556666665555332211100      000                


Q ss_pred             ----------hhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCc------cCCCCCCcccCCCc
Q 047196          311 ----------IDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTI------GLTGNPLDGVLPTS  374 (827)
Q Consensus       311 ----------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~------~l~~n~l~g~~p~~  374 (827)
                                ......+++.+++..+.+....  .+.....|+.|++.+|.+.+..+..+      .+..|.....  ..
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~  366 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FS  366 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CC
T ss_pred             hcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cc
Confidence                      0012234455555555544322  23444566666666666554332211      0111111111  11


Q ss_pred             hhcccccccEEEccCCcCcc--ccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCC-cccccc
Q 047196          375 IGNLSMSLENIYISNCNIGG--SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP-DQLCHL  451 (827)
Q Consensus       375 ~~~~~~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l  451 (827)
                      ...++ +|+.+++++|.+..  ..+..+..+.+|+.++++.|.+.+ .+..+..+++|+.++++.|......+ ..+..+
T Consensus       367 ~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l  444 (635)
T 4g8a_A          367 EVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  444 (635)
T ss_dssp             CCBCT-TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred             ccccc-ccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence            11222 34444444444431  233333444444444444444432 22334444444444444444333222 233444


Q ss_pred             ccccEEecCCCcccccCCccccCCCCCCccccCCCcc-cccCCccccccccccccCCCCCCCCCCCcccccccccCceEE
Q 047196          452 ARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRL-TSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGIN  530 (827)
Q Consensus       452 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~  530 (827)
                      .+++.+++++|++.+..|..+..++.|+.|++++|.+ .+.+|..|..+++|++|||++|++++.+|..|+++++|+.|+
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            4444444444444444444444444444444444442 223344444444444444444444444444444444444444


Q ss_pred             cccceeeecccccccCCCCCCEEECCCCcceeecCCCCc----CCceEeCcCCcCe
Q 047196          531 LSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG----YLTELNLSFNKLE  582 (827)
Q Consensus       531 Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~----~L~~L~ls~N~l~  582 (827)
                      |++|+|++..|..|+++++|+.|||++|+|++.+|..+.    +|+.|++++|+++
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            444444444444444444444444444444444444332    3444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-44  Score=419.47  Aligned_cols=455  Identities=20%  Similarity=0.194  Sum_probs=362.8

Q ss_pred             EEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCC
Q 047196          101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSD  180 (827)
Q Consensus       101 ~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n  180 (827)
                      +.+|++++++++ +|..+.  ++|++|||++|.+++..|.+|.++++|++|+|++|++++..|..+.++++|++|+|++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            789999999996 676654  89999999999999888889999999999999999999988999999999999999999


Q ss_pred             CCCCCcchhHhhccccccEEEeecccccc-cCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccc--cEEEcccccc--
Q 047196          181 KLSGELPVNICNYLHYLKVLFLAKNMFHG-QIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTIL--RKISLRNNKL--  255 (827)
Q Consensus       181 ~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~Ls~N~l--  255 (827)
                      .++ .+|..   .+++|++|+|++|++++ .+|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|++  
T Consensus       111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred             cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence            998 68877   46799999999999987 4678999999999999999999863   45555666  9999999999  


Q ss_pred             cccccccccCcC--CCcEEEeecccCcccCch-hhhcCCCccEEEecCCcc-----ccccChhhhcCCCCccEEeCcCCc
Q 047196          256 RGEIPHEIGYLP--NLENLVLGFNNLVGVVPA-AIFNMSTVKKIYLLDNSL-----LGSFSLGIDLSLPNVERLNLGLNR  327 (827)
Q Consensus       256 ~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~L~~N~  327 (827)
                      ++..|..+..++  .| .++++.|.+.+.++. .+.++++|+.+++++|..     .+.+ ..+ ..+++|+.++++++.
T Consensus       184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l-~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SEL-TRGPTLLNVTLQHIE  260 (562)
T ss_dssp             CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHH-HSCSSCEEEEEEEEE
T ss_pred             cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHH-hccCcceEEEecCCc
Confidence            888898888765  33 568889998886654 456788999999999852     2222 122 267888888888877


Q ss_pred             ccccc----CccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccC-ccccC
Q 047196          328 FSGTI----PSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIP-QLISN  402 (827)
Q Consensus       328 l~~~~----p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p-~~~~~  402 (827)
                      +++..    +..+ ..++|++|++++|.++|.+|..+...          ....+. .|+.++++.|.+  .+| ..+..
T Consensus       261 l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~----------~~~~L~-~L~~~~~~~~~~--~~p~~~~~~  326 (562)
T 3a79_B          261 TTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTY----------SETALK-SLMIEHVKNQVF--LFSKEALYS  326 (562)
T ss_dssp             ECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCC----------CSCSCC-EEEEEEEEECCC--SSCHHHHHH
T ss_pred             CcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhc----------ccccch-heehhhccccee--ecChhhhhh
Confidence            66432    2222 23589999999999988777542100          002222 566666777776  445 22222


Q ss_pred             ---CCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccc--cCCccccCCCC
Q 047196          403 ---LSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSG--SIPSCLGNLTS  477 (827)
Q Consensus       403 ---l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~  477 (827)
                         ..+|+.|++++|.+....  ....+++|++|++++|++++.+|..+.++++|++|++++|++++  .+|..+..+++
T Consensus       327 ~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  404 (562)
T 3a79_B          327 VFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS  404 (562)
T ss_dssp             HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred             hhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence               267999999999886432  12688999999999999999899999999999999999999986  34577899999


Q ss_pred             CCccccCCCcccccCCc-cccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECC
Q 047196          478 LRSPDLGSNRLTSVLPS-TFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLA  556 (827)
Q Consensus       478 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls  556 (827)
                      |++|++++|.+++.+|. .+..+++|+.|++++|++++.+|..+.  +.|+.|++++|+|+ .+|..+..+++|+.|+|+
T Consensus       405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred             CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence            99999999999985554 588899999999999999988887665  78999999999998 788888899999999999


Q ss_pred             CCcceeecCCCC---cCCceEeCcCCcCeecCCC
Q 047196          557 CNGLEGLIPESF---GYLTELNLSFNKLEGEIPR  587 (827)
Q Consensus       557 ~N~l~g~ip~~~---~~L~~L~ls~N~l~g~ip~  587 (827)
                      +|++++..+..+   .+|+.|++++|++++..|.
T Consensus       482 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          482 SNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            999995433324   4788999999999887663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7e-43  Score=414.06  Aligned_cols=445  Identities=19%  Similarity=0.180  Sum_probs=341.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      .+++.|||++|+|++..+.+|.+|++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..+.++++|++|+|
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L  155 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  155 (635)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence            47999999999999988889999999999999999999877788999999999999999999988888999999999999


Q ss_pred             CCCCCCC-CcchhHhhccccccEEEeecccccccCCccCCCCCCC----cEEEccCCCCcccCCCcCcCCccccEEEccc
Q 047196          178 DSDKLSG-ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRL----QLLNLGFKKLSGAIPKEISNLTILRKISLRN  252 (827)
Q Consensus       178 ~~n~l~g-~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  252 (827)
                      ++|.+++ .+|..+.. +++|++|++++|++++..|..+..+.++    ..++++.|.++...+..+. ...++.+++++
T Consensus       156 s~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~  233 (635)
T 4g8a_A          156 AHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRN  233 (635)
T ss_dssp             CSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEES
T ss_pred             ccCccccCCCchhhcc-chhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhc
Confidence            9999976 34555444 5699999999999999988888766554    4789999999876665554 44577888888


Q ss_pred             ccccccc-cccccCcCCCcEEEeecccCc---------------------------------ccCchhhhcCCCccEEEe
Q 047196          253 NKLRGEI-PHEIGYLPNLENLVLGFNNLV---------------------------------GVVPAAIFNMSTVKKIYL  298 (827)
Q Consensus       253 N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~---------------------------------~~~p~~~~~l~~L~~L~l  298 (827)
                      |..+..+ +..+..++.++...+..+...                                 ..++..+..+.+++.+.+
T Consensus       234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~  313 (635)
T 4g8a_A          234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL  313 (635)
T ss_dssp             CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred             ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence            7654322 223344444443333221110                                 011112223334444444


Q ss_pred             cCCccccccChhhhcCCCCccEEeCcCCccccccC-------------------ccccCCCCCcEEEcCCCcceeecCCC
Q 047196          299 LDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIP-------------------SFITNASKLVYLDMGTNSFSGIIPNT  359 (827)
Q Consensus       299 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-------------------~~~~~l~~L~~L~Ls~N~l~g~~p~~  359 (827)
                      .++.+.+..+.   ....+++.|++.+|++.+..+                   .....+++|+.|+++.|.+...    
T Consensus       314 ~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~----  386 (635)
T 4g8a_A          314 VSVTIERVKDF---SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK----  386 (635)
T ss_dssp             ESCEEEECGGG---GSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE----
T ss_pred             ccccccccccc---ccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc----
Confidence            44443322111   122344444444444433221                   1233456666666666655432    


Q ss_pred             ccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcccccccc-ccccCCCCCcEEECCCC
Q 047196          360 IGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP-VTFGRLQKLQGLYLPFN  438 (827)
Q Consensus       360 ~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N  438 (827)
                               +..+....... +++.+++..|.+.+ ++..+..+++|+.++++.|+.....+ ..|..+++++.++++.|
T Consensus       387 ---------~~~~~~~~~~~-~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n  455 (635)
T 4g8a_A          387 ---------GCCSQSDFGTI-SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  455 (635)
T ss_dssp             ---------EECCHHHHSCS-CCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred             ---------cccccchhhhh-hhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence                     12233344444 79999999999875 55668889999999999998877665 45789999999999999


Q ss_pred             CCCCCCCccccccccccEEecCCCccc-ccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCc
Q 047196          439 KLAGSIPDQLCHLARLNTLGLAGNKFS-GSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLS  517 (827)
Q Consensus       439 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p  517 (827)
                      .+.+..|..+..++.|+.|++++|++. +.+|..+..+++|++|||++|++++..|..|.++++|++|+|++|+|++..|
T Consensus       456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  535 (635)
T 4g8a_A          456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  535 (635)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred             ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence            999999999999999999999999854 4678899999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCceEEcccceeeecccccccCC-CCCCEEECCCCccee
Q 047196          518 LDIGNLRVVIGINLSRNNFSGDIPSTIGDL-KDLQNISLACNGLEG  562 (827)
Q Consensus       518 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~L~Ls~N~l~g  562 (827)
                      ..++++++|+.|||++|+|++.+|..+..+ ++|+.|+|++|.++-
T Consensus       536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            999999999999999999999999999998 689999999999864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.3e-44  Score=415.34  Aligned_cols=454  Identities=19%  Similarity=0.183  Sum_probs=372.7

Q ss_pred             CCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEe
Q 047196          123 SLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFL  202 (827)
Q Consensus       123 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~L  202 (827)
                      ..+++|+++|++++ +|..+.  ++|++|||++|.+++..|..+.++++|++|+|++|.+++..|..+.. +++|++|+|
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEEC
Confidence            34899999999995 787664  89999999999999999999999999999999999999655555544 569999999


Q ss_pred             ecccccccCCccCCCCCCCcEEEccCCCCcc-cCCCcCcCCccccEEEcccccccccccccccCcCCC--cEEEeecccC
Q 047196          203 AKNMFHGQIPLALSKCKRLQLLNLGFKKLSG-AIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNL--ENLVLGFNNL  279 (827)
Q Consensus       203 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l  279 (827)
                      ++|.++ .+|..  .+++|++|++++|++++ .+|..|+++++|++|++++|++++.   .+..+++|  ++|++++|.+
T Consensus       108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            999998 56766  89999999999999997 4578999999999999999999863   45666666  9999999999


Q ss_pred             --cccCchhhhcCC-CccEEEecCCccccccChhhhcCCCCccEEeCcCCc-----cccccCccccCCCCCcEEEcCCCc
Q 047196          280 --VGVVPAAIFNMS-TVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNR-----FSGTIPSFITNASKLVYLDMGTNS  351 (827)
Q Consensus       280 --~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~p~~~~~l~~L~~L~Ls~N~  351 (827)
                        ++..|..+..+. ....+++++|.+.+.++......+++|+.+++++|+     +.+.+ ..+..+++|+.++++++.
T Consensus       182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIE  260 (562)
T ss_dssp             CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEEEEEEEEE
T ss_pred             cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceEEEecCCc
Confidence              898998888765 233668899999888777666678899999999985     33332 357788999999998887


Q ss_pred             ceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccc-----cCCCCCceEeccCcccccccc-cccc
Q 047196          352 FSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI-----SNLSNLLLLDLEGNKLTGSIP-VTFG  425 (827)
Q Consensus       352 l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~-----~~l~~L~~L~Ls~N~l~g~~p-~~~~  425 (827)
                      +++...          .+ ++..+. . .+|++|++++|+++|.+|..+     .+++.|+.++++.|.+  .+| ..+.
T Consensus       261 l~~~~~----------~~-~~~~~~-~-~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~  325 (562)
T 3a79_B          261 TTWKCS----------VK-LFQFFW-P-RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY  325 (562)
T ss_dssp             ECHHHH----------HH-HHHHHT-T-SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH
T ss_pred             CcHHHH----------HH-HHHhhh-c-ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh
Confidence            654211          11 111111 1 279999999999999999987     7788888888888887  344 2332


Q ss_pred             C---CCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCccccc--CCccccccc
Q 047196          426 R---LQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV--LPSTFWNLK  500 (827)
Q Consensus       426 ~---l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~  500 (827)
                      .   ..+|+.|++++|.+....  ....+++|++|++++|++++.+|..++++++|++|++++|++++.  +|..+.+++
T Consensus       326 ~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  403 (562)
T 3a79_B          326 SVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS  403 (562)
T ss_dssp             HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred             hhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence            2   267999999999986432  126789999999999999999999999999999999999999984  457789999


Q ss_pred             cccccCCCCCCCCCCCcc-cccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCC---cCCceEeC
Q 047196          501 DILFFDLSSNSLDGPLSL-DIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNL  576 (827)
Q Consensus       501 ~L~~LdLs~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~L~~L~l  576 (827)
                      +|+.||+++|.+++.+|. .+..++.|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+   .+|+.|++
T Consensus       404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L  480 (562)
T 3a79_B          404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV  480 (562)
T ss_dssp             TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred             CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence            999999999999996665 488899999999999999999888776  78999999999998 566544   48999999


Q ss_pred             cCCcCeecCCCC--CCCCCCcccccccCccccCC
Q 047196          577 SFNKLEGEIPRG--GPFANFTAKSFMGNEKLCGL  608 (827)
Q Consensus       577 s~N~l~g~ip~~--~~~~~~~~~~~~~n~~lc~~  608 (827)
                      ++|+++ .+|..  ..+..+....+.+|+..|.+
T Consensus       481 ~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          481 ASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            999999 57764  45566677788999988864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.3e-44  Score=383.53  Aligned_cols=293  Identities=27%  Similarity=0.455  Sum_probs=224.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCCcCCCCCCCCCCCCc--ccceecCCCC--CcEEEEEcCCCCCcc--ccCccccCCCCC
Q 047196           51 SNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCN--WIGITCNVNS--HRVTALNISSLNLQG--TIPPQLGNLSSL  124 (827)
Q Consensus        51 ~~~~~~~~aLl~~k~~~~~~~~~~l~~w~~~~~~~C~--W~gv~C~~~~--~~v~~L~L~~~~l~g--~~~~~l~~L~~L  124 (827)
                      .|.++|++||++||+++ .||. .+.+|. .+.|||.  |.||+|+..+  ++|+.|+|+++++.|  .+|+.+.++++|
T Consensus         2 ~c~~~~~~aL~~~k~~~-~~~~-~l~~W~-~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L   78 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDL-GNPT-TLSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHT-TCCG-GGTTCC-TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHhc-CCcc-cccCCC-CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence            58899999999999998 5665 778897 5679998  9999998755  799999999999999  899999999999


Q ss_pred             CEEECCC-CCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEee
Q 047196          125 TTLNLSH-NKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLA  203 (827)
Q Consensus       125 ~~L~Ls~-N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls  203 (827)
                      ++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..+.++++|++|++++|.+++.+|..+..+ ++|++|+++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~  157 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC-CCCCeEECc
Confidence            9999995 99999999999999999999999999999988888888888888888887777777666553 477777777


Q ss_pred             cccccccCCccCCCCC-CCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCccc
Q 047196          204 KNMFHGQIPLALSKCK-RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV  282 (827)
Q Consensus       204 ~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  282 (827)
                      +|.+++.+|..+++++ +|++|++++|.+++.+|..+..++ |++|++++|++++..|..+..+++|++|+|++|++++.
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            7777777777777776 777777777777777777777766 77777777777777777777777777777777777665


Q ss_pred             CchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCc
Q 047196          283 VPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNS  351 (827)
Q Consensus       283 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  351 (827)
                      +|. +..+++|++|++++|.+.+.+|..+. .+++|++|++++|+++|.+|.. ..+++|+.+++++|.
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            554 45555555555555555555554443 4555555555555555555544 445555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.8e-43  Score=397.28  Aligned_cols=406  Identities=22%  Similarity=0.301  Sum_probs=236.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhcccc-------------ceEEecCCCCCCcccc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKL-------------KFLDFSDNQLSGSLSS  164 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L-------------~~LdLs~N~l~g~~p~  164 (827)
                      .+++.|++++|++ |.+|++++++++|++|++++|++.|.+|.+++++++|             ++|++++|.+++. |.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC
Confidence            4788899999988 8888889999999999999999988899888887765             8888888888763 32


Q ss_pred             ccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCcc
Q 047196          165 VTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTI  244 (827)
Q Consensus       165 ~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  244 (827)
                         -.++|++|+++.|.+++ +|..    ..+|++|++++|.+++ +|..   .++|++|++++|++++ +| +++++++
T Consensus        89 ---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~  154 (454)
T 1jl5_A           89 ---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF  154 (454)
T ss_dssp             ---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             ---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence               13678888888888886 6643    2578888888888875 2221   1678888888888886 66 5888888


Q ss_pred             ccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCc
Q 047196          245 LRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLG  324 (827)
Q Consensus       245 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~  324 (827)
                      |++|++++|++++ +|..+   ++|++|++++|++++ +| .+.++++|+.|++++|.+.+ +|.    ..++|++|+++
T Consensus       155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~  223 (454)
T 1jl5_A          155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAG  223 (454)
T ss_dssp             CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECC
T ss_pred             CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECc
Confidence            8888888888875 56543   478888888888887 45 57788888888888888765 332    23578888888


Q ss_pred             CCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCC
Q 047196          325 LNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLS  404 (827)
Q Consensus       325 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~  404 (827)
                      +|+++ .+|. ++.+++|++|++++|++++. |.               .    ..+|++|++++|++++ +|..   .+
T Consensus       224 ~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l-~~---------------~----~~~L~~L~l~~N~l~~-l~~~---~~  277 (454)
T 1jl5_A          224 NNILE-ELPE-LQNLPFLTTIYADNNLLKTL-PD---------------L----PPSLEALNVRDNYLTD-LPEL---PQ  277 (454)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSSC-CS---------------C----CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             CCcCC-cccc-cCCCCCCCEEECCCCcCCcc-cc---------------c----ccccCEEECCCCcccc-cCcc---cC
Confidence            88887 5664 77788888888888877642 21               1    1267788888888775 4443   36


Q ss_pred             CCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccC
Q 047196          405 NLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLG  484 (827)
Q Consensus       405 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  484 (827)
                      +|+.|++++|++++. |..   .++|+.|++++|++++ ++..   .++|+.|++++|++++ +|..   +++|++|+++
T Consensus       278 ~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~  345 (454)
T 1jl5_A          278 SLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIAS  345 (454)
T ss_dssp             TCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             cCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence            777888888877762 211   2577777777777764 2211   1467777777777775 5543   4667777777


Q ss_pred             CCcccccCCccccccccccccCCCCCCCCC--CCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCccee
Q 047196          485 SNRLTSVLPSTFWNLKDILFFDLSSNSLDG--PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEG  562 (827)
Q Consensus       485 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  562 (827)
                      +|.+++ +|.   .+++|++|++++|++++  .+|.+++.        ++.|++.|.+|..   +++|+.||+++|++++
T Consensus       346 ~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          346 FNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------
T ss_pred             CCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence            777774 444   35667777777777776  56655432        3346666666653   3566777777777766


Q ss_pred             --ecCCCCcCCceEeCcCCcCeecCC
Q 047196          563 --LIPESFGYLTELNLSFNKLEGEIP  586 (827)
Q Consensus       563 --~ip~~~~~L~~L~ls~N~l~g~ip  586 (827)
                        .+|.+   ++.|.+++|.+.+.+|
T Consensus       411 ~~~iP~s---l~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          411 FPDIPES---VEDLRMNSERVVDPYE  433 (454)
T ss_dssp             --------------------------
T ss_pred             cccchhh---HhheeCcCcccCCccc
Confidence              55543   3445566666665554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-42  Score=392.72  Aligned_cols=396  Identities=21%  Similarity=0.246  Sum_probs=215.5

Q ss_pred             ccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCC-------------cEEEcCCCCC
Q 047196          116 PQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSV-------------LDIRLDSDKL  182 (827)
Q Consensus       116 ~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L-------------~~L~L~~n~l  182 (827)
                      +.-...++|++|++++|.+ |.+|++++++++|++|++++|.++|.+|..++++.+|             ++|++++|.+
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l   83 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL   83 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred             ccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence            3334568999999999999 8999999999999999999999999999999998875             7777777777


Q ss_pred             CCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccccc
Q 047196          183 SGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHE  262 (827)
Q Consensus       183 ~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  262 (827)
                      ++ +|.    ..++|++|++++|.+++ +|..   +++|++|++++|.+++ +|..   .++|++|++++|++++ +| +
T Consensus        84 ~~-lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~  148 (454)
T 1jl5_A           84 SS-LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-E  148 (454)
T ss_dssp             SC-CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-C
T ss_pred             cc-CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-c
Confidence            75 443    12467777777777776 5543   3677777777777764 2221   1567777777777775 56 4


Q ss_pred             ccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCC
Q 047196          263 IGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKL  342 (827)
Q Consensus       263 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  342 (827)
                      ++.+++|++|++++|++++ +|..+   .+|++|++++|.+.+ +| .+ ..+++|++|++++|++++ +|...   ++|
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~-~~l~~L~~L~l~~N~l~~-l~~~~---~~L  217 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-EL-QNLPFLTAIYADNNSLKK-LPDLP---LSL  217 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CC-TTCTTCCEEECCSSCCSS-CCCCC---TTC
T ss_pred             cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cc-cCCCCCCEEECCCCcCCc-CCCCc---Ccc
Confidence            7777777777777777775 44332   366777777776665 44 23 256677777777777665 33322   466


Q ss_pred             cEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccc
Q 047196          343 VYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV  422 (827)
Q Consensus       343 ~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  422 (827)
                      ++|++++|.++ .+|.                ++.++ +|++|++++|++++ +|..   +++|+.|++++|++++ +|.
T Consensus       218 ~~L~l~~n~l~-~lp~----------------~~~l~-~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~  274 (454)
T 1jl5_A          218 ESIVAGNNILE-ELPE----------------LQNLP-FLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPE  274 (454)
T ss_dssp             CEEECCSSCCS-SCCC----------------CTTCT-TCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCC
T ss_pred             cEEECcCCcCC-cccc----------------cCCCC-CCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCc
Confidence            67777666655 2221                22333 67777777777764 3432   3567777777777765 343


Q ss_pred             cccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccc
Q 047196          423 TFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDI  502 (827)
Q Consensus       423 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  502 (827)
                      .   +++|+.|++++|++++ +|..   .++|+.|++++|++++ ++..   .++|++|++++|++++ +|..   +++|
T Consensus       275 ~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L  339 (454)
T 1jl5_A          275 L---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRL  339 (454)
T ss_dssp             C---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred             c---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcC
Confidence            2   3667777777777765 2211   1466777777777764 2211   1467777777777765 4443   3566


Q ss_pred             cccCCCCCCCCCCCcccccccccCceEEcccceeee--cccccccCCCCCCEEECCCCcceeecCCCCcCCceEeCcCCc
Q 047196          503 LFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG--DIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNK  580 (827)
Q Consensus       503 ~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~L~~L~ls~N~  580 (827)
                      +.|++++|++++ +|.   .++.|+.|++++|++++  .+|.++++        |+.|++.|.+|..+.+|+.||+++|+
T Consensus       340 ~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          340 ERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------
T ss_pred             CEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccccCcCCEEECCCCc
Confidence            677777777763 444   35667777777777776  56655443        23466667777666789999999999


Q ss_pred             Cee--cCCCC
Q 047196          581 LEG--EIPRG  588 (827)
Q Consensus       581 l~g--~ip~~  588 (827)
                      ++|  .+|..
T Consensus       408 l~~~~~iP~s  417 (454)
T 1jl5_A          408 LREFPDIPES  417 (454)
T ss_dssp             ----------
T ss_pred             CCccccchhh
Confidence            998  78853

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.4e-42  Score=390.66  Aligned_cols=391  Identities=21%  Similarity=0.247  Sum_probs=228.1

Q ss_pred             CCCCCcccc--eecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCC
Q 047196           82 NTSVCNWIG--ITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS  159 (827)
Q Consensus        82 ~~~~C~W~g--v~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~  159 (827)
                      +.+.|.|.+  |.|+.            ++++ .+|. +  .++|++|||++|.+++..|..|.++++|++|+|++|.+.
T Consensus         4 ~~~~c~~~~~~~~c~~------------~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~   67 (455)
T 3v47_A            4 GTSECSVIGYNAICIN------------RGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG   67 (455)
T ss_dssp             ---CCEEETTEEECCS------------SCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT
T ss_pred             ccceeEEEccccCcCC------------CCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCccc
Confidence            345577766  66653            2333 3344 2  278999999999999888999999999999999999998


Q ss_pred             Cccc-cccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCc
Q 047196          160 GSLS-SVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKE  238 (827)
Q Consensus       160 g~~p-~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  238 (827)
                      +.++ ..+.++++|++|+|++|.++                         +..|..|+++++|++|++++|.+++.+|..
T Consensus        68 ~~i~~~~~~~l~~L~~L~Ls~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  122 (455)
T 3v47_A           68 LVIRNNTFRGLSSLIILKLDYNQFL-------------------------QLETGAFNGLANLEVLTLTQCNLDGAVLSG  122 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCTTC-------------------------EECTTTTTTCTTCCEEECTTSCCBTHHHHS
T ss_pred             ceECcccccccccCCEEeCCCCccC-------------------------ccChhhccCcccCCEEeCCCCCCCccccCc
Confidence            6653 34555555555555555554                         444455555555555555555555433322


Q ss_pred             --CcCCccccEEEccccccccccccc-ccCcCCCcEEEeecccCcccCchhhhcC--CCccEEEecCCccccccChhh--
Q 047196          239 --ISNLTILRKISLRNNKLRGEIPHE-IGYLPNLENLVLGFNNLVGVVPAAIFNM--STVKKIYLLDNSLLGSFSLGI--  311 (827)
Q Consensus       239 --~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~l~~n~l~~~~~~~~--  311 (827)
                        ++++++|++|+|++|++++..|.. +..+++|++|+|++|++++..|..+.++  .+++.|++++|.+.+..+..+  
T Consensus       123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~  202 (455)
T 3v47_A          123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW  202 (455)
T ss_dssp             STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH
T ss_pred             ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc
Confidence              555555555555555555444443 4555555555555555555555544443  445555555555443222111  


Q ss_pred             -----hcCCCCccEEeCcCCccccccCccccCC---CCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhccccccc
Q 047196          312 -----DLSLPNVERLNLGLNRFSGTIPSFITNA---SKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLE  383 (827)
Q Consensus       312 -----~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~  383 (827)
                           ...+++|++|++++|++++..|..+...   ++|+.|++++|.+.+....     .+.+.+..+..+..+     
T Consensus       203 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----  272 (455)
T 3v47_A          203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-----HTNFKDPDNFTFKGL-----  272 (455)
T ss_dssp             HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----CCSSCCCCTTTTGGG-----
T ss_pred             cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----hhhhccCcccccccc-----
Confidence                 1145677888888888877777666543   7778888887765543111     111111111111111     


Q ss_pred             EEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCc
Q 047196          384 NIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNK  463 (827)
Q Consensus       384 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  463 (827)
                                        ..++|+.|++++|++++.+|..++.+++|++|+|++|++++..|..+.++++|++|+|++|+
T Consensus       273 ------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  334 (455)
T 3v47_A          273 ------------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF  334 (455)
T ss_dssp             ------------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ------------------cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence                              12455555555555555555555555666666666666655555555566666666666666


Q ss_pred             ccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeeccc
Q 047196          464 FSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIP  541 (827)
Q Consensus       464 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip  541 (827)
                      +++..|..+.++++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+..++.|+.|++++|++++.+|
T Consensus       335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            655555556666666666666666666666666666666666666666665555555666667777777777776665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.3e-42  Score=389.96  Aligned_cols=383  Identities=19%  Similarity=0.197  Sum_probs=281.5

Q ss_pred             CCcccceecCCC-CCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccC-ChhhhhccccceEEecCCCCCCcc
Q 047196           85 VCNWIGITCNVN-SHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDI-PPSIFTMHKLKFLDFSDNQLSGSL  162 (827)
Q Consensus        85 ~C~W~gv~C~~~-~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~LdLs~N~l~g~~  162 (827)
                      .|.+.|++.-.. ..+++.|||++|.+++..|..|.++++|++|+|++|.+.+.+ |..|.++++|++|||++|++++..
T Consensus        16 ~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~   95 (455)
T 3v47_A           16 ICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE   95 (455)
T ss_dssp             ECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC
T ss_pred             CcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC
Confidence            366666654322 357999999999999999999999999999999999998766 567999999999999999999999


Q ss_pred             ccccCCCCCCcEEEcCCCCCCCCcchh-HhhccccccEEEeecccccccCCcc-CCCCCCCcEEEccCCCCcccCCCcCc
Q 047196          163 SSVTFNLSSVLDIRLDSDKLSGELPVN-ICNYLHYLKVLFLAKNMFHGQIPLA-LSKCKRLQLLNLGFKKLSGAIPKEIS  240 (827)
Q Consensus       163 p~~~~~l~~L~~L~L~~n~l~g~ip~~-~~~~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~  240 (827)
                      |..+.++++|++|+|++|.+++.+|.. .+..+++|++|+|++|.+++..|.. +.++++|++|++++|.+++..|..+.
T Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  175 (455)
T 3v47_A           96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL  175 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred             hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence            999999999999999999998766654 2334558888888888888777766 77888888888888888888887777


Q ss_pred             CC--ccccEEEcccccccccccccc--------cCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChh
Q 047196          241 NL--TILRKISLRNNKLRGEIPHEI--------GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLG  310 (827)
Q Consensus       241 ~l--~~L~~L~Ls~N~l~~~~p~~~--------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  310 (827)
                      ++  .+|+.|++++|.+.+..+..+        ..+++|++|++++|++++..|..+...                    
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~--------------------  235 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA--------------------  235 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH--------------------
T ss_pred             ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc--------------------
Confidence            66  678888888888876544332        355677777777777777777666543                    


Q ss_pred             hhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCC
Q 047196          311 IDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNC  390 (827)
Q Consensus       311 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N  390 (827)
                        ...++|+.|++++|.+.+...              ..+.+.+..+..       +.+....       +|++|++++|
T Consensus       236 --~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~~-------~L~~L~l~~n  285 (455)
T 3v47_A          236 --IAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFT-------FKGLEAS-------GVKTCDLSKS  285 (455)
T ss_dssp             --TTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTT-------TGGGTTS-------CCCEEECCSS
T ss_pred             --ccccceeeEeecccccccccc--------------chhhhccCcccc-------ccccccc-------CceEEEecCc
Confidence              012344444444444332110              011111110000       0000000       4677777777


Q ss_pred             cCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCc
Q 047196          391 NIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS  470 (827)
Q Consensus       391 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  470 (827)
                      ++++.+|..+..+++|+.|++++|++++..|..|.++++|++|+|++|++++..|..+.++++|++|+|++|++++..|.
T Consensus       286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence            77777777777777888888888888777777777788888888888888777777777788888888888888777777


Q ss_pred             cccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCc
Q 047196          471 CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLS  517 (827)
Q Consensus       471 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p  517 (827)
                      .+..+++|++|+|++|++++..+..+..+++|+.|++++|.+++..|
T Consensus       366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            78888888888888888887666677778888888888888887766

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.5e-40  Score=371.15  Aligned_cols=353  Identities=16%  Similarity=0.181  Sum_probs=209.3

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      +++.|++++|.+++. | .+..+++|++|+|++|++++. |  ++.+++|++|||++|++++. +  +.++++|++|+++
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence            567777777777764 3 567777777777777777653 3  66777777777777777664 2  6666666666666


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE  258 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (827)
                      +|.+++ +|  + ..+++|++|++++|++++.   .++++++|++|++++|...+.+  .++.+++|++|++++|++++ 
T Consensus       115 ~N~l~~-l~--~-~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-  184 (457)
T 3bz5_A          115 TNKLTK-LD--V-SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-  184 (457)
T ss_dssp             SSCCSC-CC--C-TTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred             CCcCCe-ec--C-CCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence            666664 43  2 2234666666666666652   2556666666666666544444  35566666666666666664 


Q ss_pred             ccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccC
Q 047196          259 IPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN  338 (827)
Q Consensus       259 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (827)
                      +|  ++.+++|++|++++|++++.   .+..+++|+.|++++|.+.+ +|  + ..+++|+.|++++|++++..   +..
T Consensus       185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~-~~l~~L~~L~l~~N~l~~~~---~~~  252 (457)
T 3bz5_A          185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--V-TPLTQLTYFDCSVNPLTELD---VST  252 (457)
T ss_dssp             CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSCCC---CTT
T ss_pred             ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--c-cccCCCCEEEeeCCcCCCcC---HHH
Confidence            33  55666666666666666654   25555555556665555554 33  2 24555555555555555432   234


Q ss_pred             CCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccc
Q 047196          339 ASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG  418 (827)
Q Consensus       339 l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  418 (827)
                      +++|+.|+++.|                              +|+.|++++|.+.|.+|  ++.+++|+.|++++|...+
T Consensus       253 l~~L~~L~l~~n------------------------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~  300 (457)
T 3bz5_A          253 LSKLTTLHCIQT------------------------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY  300 (457)
T ss_dssp             CTTCCEEECTTC------------------------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred             CCCCCEEeccCC------------------------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence            445555555443                              24455566666555555  3455666666666666655


Q ss_pred             cccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccc
Q 047196          419 SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWN  498 (827)
Q Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  498 (827)
                      .+|.   ...+|+.|++++|             ++|+.|++++|++++ ++  ++++++|+.||+++|++++        
T Consensus       301 ~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------  353 (457)
T 3bz5_A          301 LLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------  353 (457)
T ss_dssp             EEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------
T ss_pred             eecc---CCCcceEechhhc-------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------
Confidence            5553   2344444444433             456667777777765 22  6666667777777776665        


Q ss_pred             cccccccCCCCCCCCCCCcccccccccCceEEcccceeeeccccccc
Q 047196          499 LKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIG  545 (827)
Q Consensus       499 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~  545 (827)
                      ++.|..|++++|.++|.     +.+..+..+++++|+++|.||..+.
T Consensus       354 l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          354 FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            23455666666666664     2445556666666777766666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6e-40  Score=371.44  Aligned_cols=362  Identities=18%  Similarity=0.187  Sum_probs=221.3

Q ss_pred             ccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhH
Q 047196          111 QGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNI  190 (827)
Q Consensus       111 ~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~  190 (827)
                      .+..+.+++++++|++|||++|.+++. | ++..+++|++|+|++|++++. |  +..+++|++|++++|.+++ +|  +
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~  102 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--V  102 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--C
T ss_pred             CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--c
Confidence            334455788899999999999999965 5 799999999999999999985 3  7788888888888888876 34  3


Q ss_pred             hhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCc
Q 047196          191 CNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLE  270 (827)
Q Consensus       191 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  270 (827)
                      . .+++|++|++++|.+++ +|  ++++++|++|++++|++++. +  ++++++|++|++++|+..+.+  .++.+++|+
T Consensus       103 ~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          103 T-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             T-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             C-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            3 34577777777777776 33  77777777777777777763 2  667777777777777655555  366777777


Q ss_pred             EEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCC
Q 047196          271 NLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTN  350 (827)
Q Consensus       271 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  350 (827)
                      +|++++|++++ +|  +..+++|+.|++++|.+.+. +  + ..+++|++|++++|++++ +|  +..+++|+.|++++|
T Consensus       174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~--l-~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D--L-NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C--C-TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred             EEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c--c-ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence            77777777776 33  55555666666666555543 1  1 144555555555555554 33  444555555555555


Q ss_pred             cceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCC
Q 047196          351 SFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKL  430 (827)
Q Consensus       351 ~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L  430 (827)
                      ++                                        ++..   ++.+++|+.|++++|              +|
T Consensus       244 ~l----------------------------------------~~~~---~~~l~~L~~L~l~~n--------------~L  266 (457)
T 3bz5_A          244 PL----------------------------------------TELD---VSTLSKLTTLHCIQT--------------DL  266 (457)
T ss_dssp             CC----------------------------------------SCCC---CTTCTTCCEEECTTC--------------CC
T ss_pred             cC----------------------------------------CCcC---HHHCCCCCEEeccCC--------------CC
Confidence            44                                        4322   223344444444433              23


Q ss_pred             cEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCC
Q 047196          431 QGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSN  510 (827)
Q Consensus       431 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  510 (827)
                      +.|++++|.+.|.+|  +..+++|+.|++++|++.+.+|.   ...+|+.|++++|             ++|+.|++++|
T Consensus       267 ~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N  328 (457)
T 3bz5_A          267 LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNT  328 (457)
T ss_dssp             SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTC
T ss_pred             CEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCC
Confidence            344445555444444  23445555555555555555443   2334444444444             34555555555


Q ss_pred             CCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCCcCCceEeCcCCcCeecCCC
Q 047196          511 SLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPR  587 (827)
Q Consensus       511 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~L~~L~ls~N~l~g~ip~  587 (827)
                      ++++.   .++.++.|+.|++++|+|++        ++.|+.|++++|+++|.  ..+..|..+++++|+++|.||.
T Consensus       329 ~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          329 ELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             CCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--EEEEECCCBCCBTTBEEEECCT
T ss_pred             ccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec--ceeeecCccccccCcEEEEcCh
Confidence            55552   25555566666666666554        13344555666666655  2333556666677777777665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.8e-37  Score=351.95  Aligned_cols=347  Identities=24%  Similarity=0.374  Sum_probs=215.8

Q ss_pred             cCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhcccccc
Q 047196          119 GNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLK  198 (827)
Q Consensus       119 ~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~  198 (827)
                      ..+++|+.|++++|.+.. +| .+..+++|++|||++|.+++.                         |. + ..+++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-------------------------~~-~-~~l~~L~   93 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-------------------------TP-L-KNLTKLV   93 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-------------------------GG-G-TTCTTCC
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-------------------------hh-h-hccccCC
Confidence            345677777777777763 44 366777777777777777632                         22 2 2234777


Q ss_pred             EEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeeccc
Q 047196          199 VLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN  278 (827)
Q Consensus       199 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  278 (827)
                      +|++++|.+++..|  ++++++|++|++++|.+++..+  +.++++|++|++++|++++ +| .++.+++|++|+++ |.
T Consensus        94 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~  166 (466)
T 1o6v_A           94 DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQ  166 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ES
T ss_pred             EEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-Cc
Confidence            77777777776544  7777777777777777775433  6777777777777777764 33 36677777777775 44


Q ss_pred             CcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCC
Q 047196          279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPN  358 (827)
Q Consensus       279 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  358 (827)
                      +.+..+  +.++++|+.|++++|.                         +++.  ..+..+++|++|++++|.+++..| 
T Consensus       167 ~~~~~~--~~~l~~L~~L~l~~n~-------------------------l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  216 (466)
T 1o6v_A          167 VTDLKP--LANLTTLERLDISSNK-------------------------VSDI--SVLAKLTNLESLIATNNQISDITP-  216 (466)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSC-------------------------CCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             ccCchh--hccCCCCCEEECcCCc-------------------------CCCC--hhhccCCCCCEEEecCCccccccc-
Confidence            443222  4445555555555544                         4332  124445555555555555443222 


Q ss_pred             CccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCC
Q 047196          359 TIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFN  438 (827)
Q Consensus       359 ~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  438 (827)
                                      ++.+. +|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|
T Consensus       217 ----------------~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  275 (466)
T 1o6v_A          217 ----------------LGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  275 (466)
T ss_dssp             ----------------GGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             ----------------ccccC-CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC
Confidence                            11122 455566666655542  245566666666666666665544  666666777777777


Q ss_pred             CCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcc
Q 047196          439 KLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSL  518 (827)
Q Consensus       439 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~  518 (827)
                      .+++..|  +..+++|+.|++++|++++..|  +..+++|+.|++++|++++..|  +..+++|+.|++++|.+++.  .
T Consensus       276 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~  347 (466)
T 1o6v_A          276 QISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--S  347 (466)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--G
T ss_pred             ccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--h
Confidence            6665433  5666667777777777665433  5666777777777777766555  56667777777777777664  3


Q ss_pred             cccccccCceEEcccceeeecccccccCCCCCCEEECCCCccee
Q 047196          519 DIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEG  562 (827)
Q Consensus       519 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  562 (827)
                      .+..++.|+.|++++|++++.+|  +..+++|+.|++++|.+++
T Consensus       348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            56677777777777777777666  6777777777777777776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.7e-37  Score=350.02  Aligned_cols=344  Identities=24%  Similarity=0.350  Sum_probs=256.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      .+++.|+++++++.. +| .+..+++|++|||++|.+++..|  +.++++|++|++++|.+++..               
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---------------  106 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT---------------  106 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---------------
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh---------------
Confidence            468999999999875 44 48899999999999999996644  999999999999999998542               


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG  257 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (827)
                                .  ...+++|++|++++|.+++..+  +.++++|++|++++|.+++. | .++++++|++|+++ |.+.+
T Consensus       107 ----------~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~  169 (466)
T 1o6v_A          107 ----------P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTD  169 (466)
T ss_dssp             ----------G--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCC
T ss_pred             ----------h--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccC
Confidence                      2  2234589999999999987644  89999999999999999863 3 48999999999997 56654


Q ss_pred             cccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCcccc
Q 047196          258 EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFIT  337 (827)
Q Consensus       258 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (827)
                      ..  .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+                           ++
T Consensus       170 ~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~  218 (466)
T 1o6v_A          170 LK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---------------------------LG  218 (466)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---------------------------GG
T ss_pred             ch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---------------------------cc
Confidence            43  389999999999999998764  235555555555555555544333                           33


Q ss_pred             CCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcccc
Q 047196          338 NASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT  417 (827)
Q Consensus       338 ~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  417 (827)
                      .+++|+.|++++|.+++.                 ..+..++ +|+.|++++|.+++..|  +..+++|+.|++++|+++
T Consensus       219 ~l~~L~~L~l~~n~l~~~-----------------~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  278 (466)
T 1o6v_A          219 ILTNLDELSLNGNQLKDI-----------------GTLASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS  278 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC-----------------GGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred             ccCCCCEEECCCCCcccc-----------------hhhhcCC-CCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence            444555555555544321                 0122222 56666666666665544  667777777777777777


Q ss_pred             ccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCcccc
Q 047196          418 GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFW  497 (827)
Q Consensus       418 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  497 (827)
                      +..+  +..+++|+.|++++|++.+..|  +..+++|+.|++++|++++..|  +..+++|+.|++++|.+++.  ..+.
T Consensus       279 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~  350 (466)
T 1o6v_A          279 NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLA  350 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhc
Confidence            6544  6777888888888888776544  6777888888888888876655  67788888888888888775  4677


Q ss_pred             ccccccccCCCCCCCCCCCcccccccccCceEEcccceeee
Q 047196          498 NLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG  538 (827)
Q Consensus       498 ~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  538 (827)
                      .+++|+.|++++|++++..|  +..++.|+.|++++|.+++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            88888888888888888777  7788888889999998886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.4e-36  Score=351.14  Aligned_cols=173  Identities=14%  Similarity=0.135  Sum_probs=89.6

Q ss_pred             cCCCCCCCCCCCCc----ccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccc
Q 047196           74 LLAQNSTSNTSVCN----WIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLK  149 (827)
Q Consensus        74 ~l~~w~~~~~~~C~----W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  149 (827)
                      .+.+|. .+.+||.    |.++.|+.   +   ++-.......  ...-..+++++.|++++|.+....+..|..+++|+
T Consensus         8 ~l~~~~-~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~~--~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~   78 (597)
T 3oja_B            8 NVKPRQ-PEYKCIDSNLQYDCVFYDV---H---IDMQTQDVYF--GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE   78 (597)
T ss_dssp             ---CCC-SEECCCCC--CCSEEECSC---E---ECSSCCCCEE--SCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCS
T ss_pred             cccCCC-CCCcCcccCcCceeEecCc---e---eccccccccc--CcccccCCCceEEEeeCCCCCCcCHHHHccCCCCc
Confidence            456776 5567774    66666652   1   1111111111  11223467888888888888766556677788888


Q ss_pred             eEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCC
Q 047196          150 FLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFK  229 (827)
Q Consensus       150 ~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  229 (827)
                      +|+|++|.+++..|..+..++                         +|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus        79 ~L~L~~n~l~~~~~~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  133 (597)
T 3oja_B           79 LLNLNDLQIEEIDTYAFAYAH-------------------------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN  133 (597)
T ss_dssp             EEECTTSCCCEECTTTTTTCT-------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCCChHHhcCCC-------------------------CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence            888888877654333333222                         3333333333333444444455555555555555


Q ss_pred             CCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCc
Q 047196          230 KLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLV  280 (827)
Q Consensus       230 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  280 (827)
                      .+++..+..|+++++|++|+|++|.+++..|..|+.+++|++|+|++|.++
T Consensus       134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            555433333455555555555555555444444444555555555444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=339.23  Aligned_cols=313  Identities=18%  Similarity=0.180  Sum_probs=210.5

Q ss_pred             CCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcc
Q 047196          108 LNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELP  187 (827)
Q Consensus       108 ~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip  187 (827)
                      ++++ .+|..+.  +++++|||++|++++..|..|.++++|++|+|++|.+++..|..+.++++|++|+|++|.++ .+|
T Consensus        21 ~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~   96 (477)
T 2id5_A           21 KRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIP   96 (477)
T ss_dssp             CCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             CCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccC
Confidence            3443 3455443  58899999999999888889999999999999999999888888888888888888888887 466


Q ss_pred             hhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcC
Q 047196          188 VNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLP  267 (827)
Q Consensus       188 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  267 (827)
                      ...+..+++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+|++|++++..+..+..++
T Consensus        97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  176 (477)
T 2id5_A           97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH  176 (477)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred             cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence            65555556888888888888877777888888888888888888877777788888888888888888766666777888


Q ss_pred             CCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEc
Q 047196          268 NLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDM  347 (827)
Q Consensus       268 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  347 (827)
                      +|++|+|++|.+++..+..+.++++|+.|++++|...+.++.... ...+|+.|++++|+++...+..+..++       
T Consensus       177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~-------  248 (477)
T 2id5_A          177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLV-------  248 (477)
T ss_dssp             TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCT-------
T ss_pred             CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCcc-------
Confidence            888888888888777666666666666666666655555444333 223444444444444422222233333       


Q ss_pred             CCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCC
Q 047196          348 GTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRL  427 (827)
Q Consensus       348 s~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l  427 (827)
                                                       +|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+
T Consensus       249 ---------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          249 ---------------------------------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             ---------------------------------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             ---------------------------------ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence                                             34444444444444444445555555555555555555555555555


Q ss_pred             CCCcEEECCCCCCCCCCCccccccccccEEecCCCccc
Q 047196          428 QKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS  465 (827)
Q Consensus       428 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  465 (827)
                      ++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus       296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            55666666666555544445555555556666655554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.2e-36  Score=341.07  Aligned_cols=300  Identities=23%  Similarity=0.224  Sum_probs=153.5

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      ++++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            56777777777776666677777777777777777776667777777777777777777765555556677777777777


Q ss_pred             cccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceee
Q 047196          276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       276 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  355 (827)
                      +|++++..|..+.++++|+.|++++|.+.+..+..+. .+++|+.|++++|++++..+..+.++++|+.|++++|.+.+.
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            7777666666665555555555555555443333322 444555555555555444334444444444444444444332


Q ss_pred             cCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEEC
Q 047196          356 IPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL  435 (827)
Q Consensus       356 ~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  435 (827)
                      .+.               .+..+. +|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..+++|+.|+|
T Consensus       192 ~~~---------------~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  255 (477)
T 2id5_A          192 RDY---------------SFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL  255 (477)
T ss_dssp             CTT---------------CSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             Chh---------------hcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence            221               111111 3444444444444333333333334444444444444333233444444444444


Q ss_pred             CCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCC
Q 047196          436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL  512 (827)
Q Consensus       436 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  512 (827)
                      ++|.+++..+..+.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            44444433333444444444444444444444444444444444444444444443333334444444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4e-35  Score=326.25  Aligned_cols=349  Identities=16%  Similarity=0.148  Sum_probs=170.3

Q ss_pred             CCCCCCCCCCCCc-ccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEe
Q 047196           75 LAQNSTSNTSVCN-WIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDF  153 (827)
Q Consensus        75 l~~w~~~~~~~C~-W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdL  153 (827)
                      +++|. .+.+||. |.+..|.....++     ............-..++++++|++++|.++...+..+..+++|++|+|
T Consensus         3 ~~~~~-~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L   76 (390)
T 3o6n_A            3 VKPRQ-PEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL   76 (390)
T ss_dssp             ----C-CEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEEC
T ss_pred             cCCCC-Cccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEEC
Confidence            45676 5567774 5555553221122     221111122222345789999999999998655556788999999999


Q ss_pred             cCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcc
Q 047196          154 SDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSG  233 (827)
Q Consensus       154 s~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  233 (827)
                      ++|.+++..+..+..+++|++|+|++|.++                         +..|..++++++|++|++++|.++.
T Consensus        77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~~  131 (390)
T 3o6n_A           77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------------------------YLPPHVFQNVPLLTVLVLERNDLSS  131 (390)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCcccccChhhccCCCCcCEEECCCCCCC-------------------------cCCHHHhcCCCCCCEEECCCCccCc
Confidence            999998665556665555555555555544                         3344444555555555555555553


Q ss_pred             cCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhc
Q 047196          234 AIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDL  313 (827)
Q Consensus       234 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  313 (827)
                      ..+..++++++|++|++++|++++..|..+..+++|++|++++|++++..   +..+++|+.|++++|.+.+.      .
T Consensus       132 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~------~  202 (390)
T 3o6n_A          132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL------A  202 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEE------E
T ss_pred             CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccccc------C
Confidence            33333455555555555555555444445555555555555555554421   22233333333333333211      0


Q ss_pred             CCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCc
Q 047196          314 SLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIG  393 (827)
Q Consensus       314 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~  393 (827)
                      ..++|+.|++++|+++.. |..  ..++                                        |+.|++++|+++
T Consensus       203 ~~~~L~~L~l~~n~l~~~-~~~--~~~~----------------------------------------L~~L~l~~n~l~  239 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVV-RGP--VNVE----------------------------------------LTILKLQHNNLT  239 (390)
T ss_dssp             CCSSCSEEECCSSCCCEE-ECC--CCSS----------------------------------------CCEEECCSSCCC
T ss_pred             CCCcceEEECCCCeeeec-ccc--cccc----------------------------------------ccEEECCCCCCc
Confidence            123344444444444432 111  1234                                        444444444444


Q ss_pred             cccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCcccc
Q 047196          394 GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLG  473 (827)
Q Consensus       394 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  473 (827)
                      +.  ..+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+.
T Consensus       240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~  315 (390)
T 3o6n_A          240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP  315 (390)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence            32  234444444444444444444444444444445555555444442 3333344444555555555444 3344444


Q ss_pred             CCCCCCccccCCCcccccCCccccccccccccCCCCCCCC
Q 047196          474 NLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD  513 (827)
Q Consensus       474 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  513 (827)
                      .+++|++|++++|.++...   +..+++|+.|++++|.++
T Consensus       316 ~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          316 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred             ccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCcc
Confidence            4445555555555544331   334444555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=8e-36  Score=323.16  Aligned_cols=282  Identities=21%  Similarity=0.267  Sum_probs=204.4

Q ss_pred             cCCCHHHHHHHHHHHhhcCCCCCCcCCCCC---CCCCCCCcccceecCC--------CCCcEEEEEcCCCCCccccCccc
Q 047196           50 ASNITTDQQALLALKAHISYDPTNLLAQNS---TSNTSVCNWIGITCNV--------NSHRVTALNISSLNLQGTIPPQL  118 (827)
Q Consensus        50 ~~~~~~~~~aLl~~k~~~~~~~~~~l~~w~---~~~~~~C~W~gv~C~~--------~~~~v~~L~L~~~~l~g~~~~~l  118 (827)
                      +++..+|++||++||+++..|+.+.+.+|.   ....++|.|.|+.|+.        ...+|+.|+|++|+++ .+|+.+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            345678999999999998778877778883   2567899999999952        3468999999999998 778889


Q ss_pred             cCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhcccccc
Q 047196          119 GNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLK  198 (827)
Q Consensus       119 ~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~  198 (827)
                      +++++|++|+|++|.++ .+|..++.+++|++|||++|.++ .+|..+.++++|++|++++|++.+.+|..+...     
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-----  173 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST-----  173 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-----
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-----
Confidence            99999999999999999 89999999999999999999998 667777788777777777777777777654320     


Q ss_pred             EEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeeccc
Q 047196          199 VLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN  278 (827)
Q Consensus       199 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  278 (827)
                                 .++..++++++|++|++++|.++ .+|..++++++|++|+|++|++++ +|..++.+++|++|+|++|+
T Consensus       174 -----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          174 -----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             -----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCT
T ss_pred             -----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCc
Confidence                       01122334556666666666665 555556666666666666666653 44456666666666666666


Q ss_pred             CcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcce
Q 047196          279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFS  353 (827)
Q Consensus       279 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  353 (827)
                      +.+.+|..+.++++|+.|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..++++++|+.+++..+.+.
T Consensus       241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             chhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            6666666666666666666666666666665554 6677777777777777777777777777777777766554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.6e-34  Score=310.99  Aligned_cols=227  Identities=34%  Similarity=0.626  Sum_probs=143.7

Q ss_pred             cccEEEccC-CcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEec
Q 047196          381 SLENIYISN-CNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  459 (827)
                      +|++|++++ |++.+.+|..|.++++|++|+|++|++++.+|..|.++++|++|+|++|.+++.+|..+..+++|++|++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            344444442 4444455555555555555555555555555555555555555555555555555555555556666666


Q ss_pred             CCCcccccCCccccCCC-CCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeee
Q 047196          460 AGNKFSGSIPSCLGNLT-SLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG  538 (827)
Q Consensus       460 s~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  538 (827)
                      ++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+++.+|..++.++.|+.|++++|++++
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            66666555565555555 566666666666666666665555 6666666666666666666666666666666666666


Q ss_pred             cccccccCCCCCCEEECCCCcceeecCCCCc---CCceEeCcCCcCeecCCCCCCCCCCcccccccCccccCCC
Q 047196          539 DIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLP  609 (827)
Q Consensus       539 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p  609 (827)
                      .+|. +..+++|+.|+|++|+++|.+|..+.   +|+.|++++|+++|.+|..+.+..+....+.+|+.+||.|
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence            5554 56666677777777777766666543   5677777777777777777777788888888999999964

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-33  Score=312.14  Aligned_cols=309  Identities=18%  Similarity=0.173  Sum_probs=156.3

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      ++++|++++|.++...+..+.++++|++|++++|.+++..|..|+++++|++|+|++|++++..|..++.+++|++|+|+
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            45555555555443333334445555555555555554444455555555555555555554444445555555555555


Q ss_pred             cccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceee
Q 047196          276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       276 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  355 (827)
                      +|+++...+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|++++.   .+..+++|+.|++++|.+++.
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence            5555432222223333333333333332222111111 333344444444444322   123334444444444443321


Q ss_pred             cCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEEC
Q 047196          356 IPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL  435 (827)
Q Consensus       356 ~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  435 (827)
                                                                   ...++|+.|++++|++... |..  ..++|+.|++
T Consensus       202 ---------------------------------------------~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l  233 (390)
T 3o6n_A          202 ---------------------------------------------AIPIAVEELDASHNSINVV-RGP--VNVELTILKL  233 (390)
T ss_dssp             ---------------------------------------------ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEEC
T ss_pred             ---------------------------------------------CCCCcceEEECCCCeeeec-ccc--ccccccEEEC
Confidence                                                         1123444444444444432 111  1245555555


Q ss_pred             CCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCC
Q 047196          436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGP  515 (827)
Q Consensus       436 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  515 (827)
                      ++|.+++.  ..+..+++|+.|++++|++++..|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|++|+++ .
T Consensus       234 ~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~  309 (390)
T 3o6n_A          234 QHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-H  309 (390)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-C
T ss_pred             CCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-e
Confidence            55555542  345555566666666666665556666666666666666666655 3444455666666666666666 3


Q ss_pred             CcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceee
Q 047196          516 LSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGL  563 (827)
Q Consensus       516 ~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  563 (827)
                      +|..++.++.|+.|++++|+|+.. |  +..+++|+.|++++|.++..
T Consensus       310 ~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          310 VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            455566677777777777777643 3  66777888888888887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.7e-33  Score=324.49  Aligned_cols=287  Identities=17%  Similarity=0.185  Sum_probs=186.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      ..++.++++++.+....+..+.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..+.+++       
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------  123 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-------  123 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-------
Confidence            3578899999999877666789999999999999999998888999999999999999999976666555554       


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG  257 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (827)
                                        +|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++
T Consensus       124 ------------------~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          124 ------------------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             ------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             ------------------CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence                              45555555555555455557899999999999999999999999999999999999999986


Q ss_pred             cccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCcccc
Q 047196          258 EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFIT  337 (827)
Q Consensus       258 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (827)
                      .   .++.+++|+.|++++|.+++.     .                         ..++|+.|++++|.++...+..  
T Consensus       186 ~---~~~~l~~L~~L~l~~n~l~~l-----~-------------------------~~~~L~~L~ls~n~l~~~~~~~--  230 (597)
T 3oja_B          186 V---DLSLIPSLFHANVSYNLLSTL-----A-------------------------IPIAVEELDASHNSINVVRGPV--  230 (597)
T ss_dssp             C---CGGGCTTCSEEECCSSCCSEE-----E-------------------------CCTTCSEEECCSSCCCEEECSC--
T ss_pred             c---ChhhhhhhhhhhcccCccccc-----c-------------------------CCchhheeeccCCccccccccc--
Confidence            5   256678899999998887642     1                         1224555555555554322211  


Q ss_pred             CCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcccc
Q 047196          338 NASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT  417 (827)
Q Consensus       338 ~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  417 (827)
                       .++|+.|++++|.+++.                 ..+..++ +|+.|+|++|.+++.+|..|..+++|+.|+|++|+++
T Consensus       231 -~~~L~~L~L~~n~l~~~-----------------~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          231 -NVELTILKLQHNNLTDT-----------------AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             -CSCCCEEECCSSCCCCC-----------------GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred             -CCCCCEEECCCCCCCCC-----------------hhhccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence             12344444444443321                 1122222 3444444444444444444444444555555554444


Q ss_pred             ccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCccc
Q 047196          418 GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS  465 (827)
Q Consensus       418 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  465 (827)
                      + +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++
T Consensus       292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence            3 2333344444444444444444 33444444444444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.4e-32  Score=295.98  Aligned_cols=302  Identities=23%  Similarity=0.392  Sum_probs=146.2

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      +++.|+++++.+... + .+..+++|++|+|++|++++. |. +..+++|++|+|++|.+++.  +.+.+++        
T Consensus        45 ~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~--------  110 (347)
T 4fmz_A           45 SITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLT--------  110 (347)
T ss_dssp             TCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCT--------
T ss_pred             cccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCC--------
Confidence            455566665555432 2 355555666666666655532 22 55555566666655555432  1233344        


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE  258 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (827)
                                       +|++|++++|.+++..+  +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+.
T Consensus       111 -----------------~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~  170 (347)
T 4fmz_A          111 -----------------NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV  170 (347)
T ss_dssp             -----------------TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC
T ss_pred             -----------------cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc
Confidence                             44444444444433221  4455555555555554333222 245555555555555555433


Q ss_pred             ccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccC
Q 047196          259 IPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN  338 (827)
Q Consensus       259 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (827)
                      .+  +..+++|++|++++|.+++..+  +..+++|+.+++++|.+.+..+  + ..+++|++|++++|++++..+  +..
T Consensus       171 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~n~l~~~~~--~~~  241 (347)
T 4fmz_A          171 TP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V-ANMTRLNSLKIGNNKITDLSP--LAN  241 (347)
T ss_dssp             GG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             hh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--h-hcCCcCCEEEccCCccCCCcc--hhc
Confidence            22  4555555555555555544322  3344444444444443332221  1 134444444444444443222  344


Q ss_pred             CCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccc
Q 047196          339 ASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG  418 (827)
Q Consensus       339 l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  418 (827)
                      +++|+.                                        |++++|.+++.  ..+..+++|+.|++++|++++
T Consensus       242 l~~L~~----------------------------------------L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          242 LSQLTW----------------------------------------LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             CTTCCE----------------------------------------EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCE----------------------------------------EECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence            444444                                        44444444432  234445555555555555554


Q ss_pred             cccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCccc
Q 047196          419 SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLT  489 (827)
Q Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  489 (827)
                      .  +.+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|  +..+++|++||+++|.++
T Consensus       280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            3  234555555555555555555555555555566666666666554444  555566666666666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.6e-32  Score=294.79  Aligned_cols=301  Identities=25%  Similarity=0.387  Sum_probs=136.6

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      +|++|++++|.+.. +| .+..+++|++|++++|.+++..+  +.++++|++|++++|.++. +| .+..+++|++|+++
T Consensus        45 ~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           45 SITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLN  118 (347)
T ss_dssp             TCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECT
T ss_pred             cccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECc
Confidence            55555555555542 22 24455555555555555543322  4455555555555555543 22 34455555555555


Q ss_pred             cccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceee
Q 047196          276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       276 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  355 (827)
                      +|.+++..+  +.                         .+++|+.|++++|.....++ .+..+++|++|++++|.+.+.
T Consensus       119 ~n~i~~~~~--~~-------------------------~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~  170 (347)
T 4fmz_A          119 EDNISDISP--LA-------------------------NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV  170 (347)
T ss_dssp             TSCCCCCGG--GT-------------------------TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC
T ss_pred             CCcccCchh--hc-------------------------cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc
Confidence            555443221  33                         34444444444443332222 244444455555444444321


Q ss_pred             cCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEEC
Q 047196          356 IPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL  435 (827)
Q Consensus       356 ~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  435 (827)
                      .+                 +..+. +|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++
T Consensus       171 ~~-----------------~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  228 (347)
T 4fmz_A          171 TP-----------------IANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI  228 (347)
T ss_dssp             GG-----------------GGGCT-TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred             hh-----------------hccCC-CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEc
Confidence            11                 11222 34444444444443222  4444555555555555544332  444555555555


Q ss_pred             CCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCC
Q 047196          436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGP  515 (827)
Q Consensus       436 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  515 (827)
                      ++|++++..+  +..+++|++|++++|++++.  +.+..+++|++|++++|.+++.  +.+..+++|+.|++++|.+++.
T Consensus       229 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~  302 (347)
T 4fmz_A          229 GNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE  302 (347)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred             cCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence            5555543222  44455555555555555431  2344445555555555555442  2244444444444444444444


Q ss_pred             CcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcc
Q 047196          516 LSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGL  560 (827)
Q Consensus       516 ~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l  560 (827)
                      .|..++.++.|+.|++++|++++..|  +..+++|+.|++++|.+
T Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             ChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            44444444444445555554444333  44444444444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=5.6e-35  Score=332.56  Aligned_cols=390  Identities=17%  Similarity=0.185  Sum_probs=224.8

Q ss_pred             CCCCEEECCCCCCCccCChh-hhhccccceEEecCCCCCC----ccccccCCCCCCcEEEcCCCCCCCCcchhHhhccc-
Q 047196          122 SSLTTLNLSHNKLSGDIPPS-IFTMHKLKFLDFSDNQLSG----SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLH-  195 (827)
Q Consensus       122 ~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~LdLs~N~l~g----~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~-  195 (827)
                      ++|++|||++|+++...... +..+++|++|+|++|.+++    .++..+..+++|++|+|++|.+.+..+..++..+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34556666666655333222 5556666666666666653    23444555555555555555554434444444443 


Q ss_pred             ---cccEEEeecccccc----cCCccCCCCCCCcEEEccCCCCcccCCCcCc-----CCccccEEEccccccccc----c
Q 047196          196 ---YLKVLFLAKNMFHG----QIPLALSKCKRLQLLNLGFKKLSGAIPKEIS-----NLTILRKISLRNNKLRGE----I  259 (827)
Q Consensus       196 ---~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~  259 (827)
                         +|++|+|++|.++.    .+|..+.++++|++|++++|.++...+..+.     ..++|++|++++|++++.    +
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               47777777776663    4466666677777777777766543332222     234566666666666543    2


Q ss_pred             cccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccc----cCcc
Q 047196          260 PHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGT----IPSF  335 (827)
Q Consensus       260 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~  335 (827)
                      +..+..+++|++|+|++|.++...+..+..                    .+....++|++|++++|+++..    ++..
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            444555566666666666655433332221                    1111234566666666665542    3555


Q ss_pred             ccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchh-cccccccEEEccCCcCccc----cCccccCCCCCceEe
Q 047196          336 ITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIG-NLSMSLENIYISNCNIGGS----IPQLISNLSNLLLLD  410 (827)
Q Consensus       336 ~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~-~~~~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~  410 (827)
                      +..+++|+.|++++|.+++.....           +...+. .. .+|++|++++|++++.    ++..+..+++|+.|+
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~-----------l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  290 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAE-----------LCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS  290 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHH-----------HHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHhCCCccEEeccCCcCChHHHHH-----------HHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence            556666666666666654321000           000111 11 2677777777777654    566666677778888


Q ss_pred             ccCcccccccccccc-----CCCCCcEEECCCCCCCCC----CCccccccccccEEecCCCcccccCCccccC-----CC
Q 047196          411 LEGNKLTGSIPVTFG-----RLQKLQGLYLPFNKLAGS----IPDQLCHLARLNTLGLAGNKFSGSIPSCLGN-----LT  476 (827)
Q Consensus       411 Ls~N~l~g~~p~~~~-----~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~  476 (827)
                      +++|.+++..+..+.     ..++|+.|++++|.+++.    +|..+..+++|+.|++++|++++..+..+..     .+
T Consensus       291 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  370 (461)
T 1z7x_W          291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS  370 (461)
T ss_dssp             CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC
Confidence            887777654443332     235788888888877754    4555666778888888888777654443332     56


Q ss_pred             CCCccccCCCcccc----cCCccccccccccccCCCCCCCCCCCccccc-----ccccCceEEcccceeeeccccc
Q 047196          477 SLRSPDLGSNRLTS----VLPSTFWNLKDILFFDLSSNSLDGPLSLDIG-----NLRVVIGINLSRNNFSGDIPST  543 (827)
Q Consensus       477 ~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~-----~l~~L~~L~Ls~N~l~g~ip~~  543 (827)
                      +|++|++++|.+++    .+|..+..+++|++||+++|.+++.-...+.     ....|+.|++.++.+....+..
T Consensus       371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence            78888888888875    6677777778888888888887753211111     1234666777666666554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=1.8e-31  Score=289.91  Aligned_cols=290  Identities=23%  Similarity=0.278  Sum_probs=165.3

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      +++++++++|.++ .+|..+.  ++|+.|++++|.+++..|..|.++++|++|++++|++++..|..|+.+++|++|+|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4666666666655 4454442  456666666666665555566666666666666666665556666666666666666


Q ss_pred             cccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceee
Q 047196          276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       276 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  355 (827)
                      +|+++. +|..+.                           ++|++|++++|++++..+..+..+++|+.|++++|.++..
T Consensus       111 ~n~l~~-l~~~~~---------------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  162 (332)
T 2ft3_A          111 KNHLVE-IPPNLP---------------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS  162 (332)
T ss_dssp             SSCCCS-CCSSCC---------------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred             CCcCCc-cCcccc---------------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence            666552 332221                           3444455555555444444445555555555555544310


Q ss_pred             cCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEEC
Q 047196          356 IPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL  435 (827)
Q Consensus       356 ~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  435 (827)
                                   +..|..+..+  +|++|++++|++++ +|..+.  ++|+.|++++|++++..|..+..+++|+.|+|
T Consensus       163 -------------~~~~~~~~~l--~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          163 -------------GFEPGAFDGL--KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             -------------GSCTTSSCSC--CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             -------------CCCcccccCC--ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence                         0011122222  35555555555554 333322  45666666666666655566666666666666


Q ss_pred             CCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCcccccc------ccccccCCCC
Q 047196          436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNL------KDILFFDLSS  509 (827)
Q Consensus       436 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~  509 (827)
                      ++|++++..|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+      ..|+.|++++
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence            666666655556666666666666666666 566666666666666666666666555555432      4566777777


Q ss_pred             CCCC--CCCcccccccccCceEEcccce
Q 047196          510 NSLD--GPLSLDIGNLRVVIGINLSRNN  535 (827)
Q Consensus       510 N~l~--g~~p~~~~~l~~L~~L~Ls~N~  535 (827)
                      |.+.  +..|..+..++.|+.+++++|+
T Consensus       304 N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          304 NPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CcccccccCcccccccchhhhhhccccc
Confidence            7776  5566667777777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=4.1e-35  Score=333.72  Aligned_cols=383  Identities=20%  Similarity=0.195  Sum_probs=256.6

Q ss_pred             CCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccc----cCCccCCCCCCCcEEEccCCCCcccCCCcCc-CCc-
Q 047196          170 SSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHG----QIPLALSKCKRLQLLNLGFKKLSGAIPKEIS-NLT-  243 (827)
Q Consensus       170 ~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~-  243 (827)
                      ++|++|+|+.|.++......++..+++|++|+|++|.++.    .++..+..+++|++|++++|.++...+..+. .+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3466777777776644334444455567777777776653    3455556666666777766666543332221 233 


Q ss_pred             ---cccEEEcccccccc----cccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCC
Q 047196          244 ---ILRKISLRNNKLRG----EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLP  316 (827)
Q Consensus       244 ---~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  316 (827)
                         +|++|+|++|+++.    .+|..+..+++|++|+|++|.+++..+..+..                    .+....+
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--------------------~l~~~~~  142 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--------------------GLLDPQC  142 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--------------------HHTSTTC
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH--------------------HHhcCCC
Confidence               46666666666652    44566666666666666666665443333221                    1111345


Q ss_pred             CccEEeCcCCccccc----cCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcC
Q 047196          317 NVERLNLGLNRFSGT----IPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNI  392 (827)
Q Consensus       317 ~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l  392 (827)
                      +|++|++++|++++.    ++..+..+++|+.|++++|.+++..+..           +...+.....+|++|++++|++
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-----------l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV-----------LCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH-----------HHHHHHHSCCCCCEEECTTSCC
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH-----------HHHHHhcCCCCceEEEccCCCC
Confidence            677777777777653    3455566778888888877765432210           0011111112688888888888


Q ss_pred             ccc----cCccccCCCCCceEeccCccccccc-----cccccCCCCCcEEECCCCCCCCC----CCccccccccccEEec
Q 047196          393 GGS----IPQLISNLSNLLLLDLEGNKLTGSI-----PVTFGRLQKLQGLYLPFNKLAGS----IPDQLCHLARLNTLGL  459 (827)
Q Consensus       393 ~g~----~p~~~~~l~~L~~L~Ls~N~l~g~~-----p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L  459 (827)
                      ++.    ++..+..+++|+.|++++|++++..     +..+..+++|+.|++++|.+++.    ++..+..+++|+.|++
T Consensus       212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  291 (461)
T 1z7x_W          212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL  291 (461)
T ss_dssp             BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence            763    5777778889999999999887542     33344688999999999988754    5677777889999999


Q ss_pred             CCCcccccCCcccc-----CCCCCCccccCCCccccc----CCccccccccccccCCCCCCCCCCCcccccc-----ccc
Q 047196          460 AGNKFSGSIPSCLG-----NLTSLRSPDLGSNRLTSV----LPSTFWNLKDILFFDLSSNSLDGPLSLDIGN-----LRV  525 (827)
Q Consensus       460 s~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~-----l~~  525 (827)
                      ++|++++..+..+.     ..++|++|++++|.+++.    +|..+..+++|+.||+++|.+++..+..+..     .+.
T Consensus       292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence            99988755443333     236899999999998865    4666777889999999999888765555543     568


Q ss_pred             CceEEcccceeee----cccccccCCCCCCEEECCCCcceee--------cCCCCcCCceEeCcCCcCee
Q 047196          526 VIGINLSRNNFSG----DIPSTIGDLKDLQNISLACNGLEGL--------IPESFGYLTELNLSFNKLEG  583 (827)
Q Consensus       526 L~~L~Ls~N~l~g----~ip~~~~~l~~L~~L~Ls~N~l~g~--------ip~~~~~L~~L~ls~N~l~g  583 (827)
                      |+.|++++|++++    .+|..+..+++|+.|++++|++++.        +|.....|+.|++.++.+..
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            9999999999987    7888898999999999999998764        56656678888888776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=3e-31  Score=288.19  Aligned_cols=288  Identities=25%  Similarity=0.302  Sum_probs=228.9

Q ss_pred             CCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEec
Q 047196          220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLL  299 (827)
Q Consensus       220 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  299 (827)
                      +++.++++++.++ .+|..+.  ++|++|++++|++++..|..|..+++|++|+|++|++++..|..+.           
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------   99 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS-----------   99 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST-----------
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh-----------
Confidence            5677777777766 4555443  5677777777777666666677777777777777777666555554           


Q ss_pred             CCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhccc
Q 047196          300 DNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLS  379 (827)
Q Consensus       300 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~  379 (827)
                                    .+++|++|++++|+++ .+|..+.  ++|++|++++|++++..+.               .+..+.
T Consensus       100 --------------~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~---------------~~~~l~  147 (332)
T 2ft3_A          100 --------------PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKG---------------VFSGLR  147 (332)
T ss_dssp             --------------TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSG---------------GGSSCS
T ss_pred             --------------CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHh---------------HhCCCc
Confidence                          4556666666667666 4454444  7999999999998754332               344454


Q ss_pred             ccccEEEccCCcCc--cccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEE
Q 047196          380 MSLENIYISNCNIG--GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTL  457 (827)
Q Consensus       380 ~~L~~L~Ls~N~l~--g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  457 (827)
                       +|++|++++|.++  +..|..+..+ +|+.|++++|++++ +|..+.  ++|+.|++++|++++..|..+..+++|+.|
T Consensus       148 -~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          148 -NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             -SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             -cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence             8999999999996  4778888888 99999999999996 555543  799999999999999888999999999999


Q ss_pred             ecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCccccccc------ccCceEEc
Q 047196          458 GLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNL------RVVIGINL  531 (827)
Q Consensus       458 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l------~~L~~L~L  531 (827)
                      ++++|++++..|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+...      ..|+.|++
T Consensus       223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence            99999999888889999999999999999999 678889999999999999999998777777653      56899999


Q ss_pred             ccceee--ecccccccCCCCCCEEECCCCc
Q 047196          532 SRNNFS--GDIPSTIGDLKDLQNISLACNG  559 (827)
Q Consensus       532 s~N~l~--g~ip~~~~~l~~L~~L~Ls~N~  559 (827)
                      ++|.+.  +..|..|..+++|+.+++++|+
T Consensus       302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ecCcccccccCcccccccchhhhhhccccc
Confidence            999998  6778889999999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=7e-31  Score=285.03  Aligned_cols=267  Identities=23%  Similarity=0.248  Sum_probs=139.9

Q ss_pred             CCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEec
Q 047196          220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLL  299 (827)
Q Consensus       220 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  299 (827)
                      +|++|++++|++++..+..|+++++|++|+|++|++++..|..|+.+++|++|+|++|+++. +|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence            44444444444444444444444444444444444444444444444444444444444442 222221  334444444


Q ss_pred             CCccccccChhhhcCCCCccEEeCcCCccc--cccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhc
Q 047196          300 DNSLLGSFSLGIDLSLPNVERLNLGLNRFS--GTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGN  377 (827)
Q Consensus       300 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~  377 (827)
                      +|.+.+..+..+ ..+++|+.|++++|++.  +..+..+..+++|++|++++|.++.. |               ..+. 
T Consensus       130 ~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~---------------~~~~-  191 (330)
T 1xku_A          130 ENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-P---------------QGLP-  191 (330)
T ss_dssp             SSCCCBBCHHHH-TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-C---------------SSCC-
T ss_pred             CCcccccCHhHh-cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-C---------------cccc-
Confidence            443332222111 24555555555555553  24555666677777777777666531 1               1111 


Q ss_pred             ccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEE
Q 047196          378 LSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTL  457 (827)
Q Consensus       378 ~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  457 (827)
                        .+|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|
T Consensus       192 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L  268 (330)
T 1xku_A          192 --PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV  268 (330)
T ss_dssp             --TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred             --ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEE
Confidence              25677777777777666666777777777777777777666666666777777777777666 566666666666777


Q ss_pred             ecCCCcccccCCccccCC------CCCCccccCCCcccc--cCCccccccccccccCCCCC
Q 047196          458 GLAGNKFSGSIPSCLGNL------TSLRSPDLGSNRLTS--VLPSTFWNLKDILFFDLSSN  510 (827)
Q Consensus       458 ~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N  510 (827)
                      ++++|++++..+..|...      ..|+.+++++|.+..  ..|..|..+.+++.++|++|
T Consensus       269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            777766665444444322      344555555555432  33344444444444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.2e-30  Score=283.22  Aligned_cols=298  Identities=22%  Similarity=0.300  Sum_probs=215.6

Q ss_pred             CCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEe
Q 047196          219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYL  298 (827)
Q Consensus       219 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  298 (827)
                      .+++.++++++.++ .+|..+.  +.|++|++++|++++..+..|+.+++|++|+|++|++++..|..+.++++|++|++
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            36778888888877 4565554  68999999999999887778999999999999999999998999999999999999


Q ss_pred             cCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcc
Q 047196          299 LDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNL  378 (827)
Q Consensus       299 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~  378 (827)
                      ++|.+. .+|..+.   ++|++|++++|++++..+..+.++++|+.|++++|.+...             +..+..+..+
T Consensus       108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l  170 (330)
T 1xku_A          108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-------------GIENGAFQGM  170 (330)
T ss_dssp             CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-------------GBCTTGGGGC
T ss_pred             CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-------------CcChhhccCC
Confidence            999886 4555433   6899999999999888777888889999999888877531             1223344444


Q ss_pred             cccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEe
Q 047196          379 SMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLG  458 (827)
Q Consensus       379 ~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  458 (827)
                      . +|++|++++|+++. +|..+.  ++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus       171 ~-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  246 (330)
T 1xku_A          171 K-KLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  246 (330)
T ss_dssp             T-TCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             C-CcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence            4 67777777777774 444332  6777777777777776677777777777777777777766666677777777777


Q ss_pred             cCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeee
Q 047196          459 LAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG  538 (827)
Q Consensus       459 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  538 (827)
                      +++|+++ .+|..+..+++|++|++++|++++..+..|.....                  ......+..+++++|.+..
T Consensus       247 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~------------------~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY------------------NTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC------------------CTTSCCCSEEECCSSSSCG
T ss_pred             CCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc------------------ccccccccceEeecCcccc
Confidence            7777776 56666777777777777777777655554432210                  0112455667777776653


Q ss_pred             --cccccccCCCCCCEEECCCCc
Q 047196          539 --DIPSTIGDLKDLQNISLACNG  559 (827)
Q Consensus       539 --~ip~~~~~l~~L~~L~Ls~N~  559 (827)
                        ..|..|..+..++.++|++|+
T Consensus       308 ~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          308 WEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GGSCGGGGTTCCCGGGEEC----
T ss_pred             cccCccccccccceeEEEecccC
Confidence              445677777778888887774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=1.6e-33  Score=331.20  Aligned_cols=256  Identities=13%  Similarity=0.120  Sum_probs=125.1

Q ss_pred             CCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCC---CccCChhhh------------hccccc
Q 047196           85 VCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKL---SGDIPPSIF------------TMHKLK  149 (827)
Q Consensus        85 ~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l---~g~~p~~~~------------~l~~L~  149 (827)
                      |++|.++.+... .+   +.+.+ ......+..+..+++|++|+|+++..   .+.+|..++            .+++|+
T Consensus        41 ck~W~~~~~~~~-~~---l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~  115 (592)
T 3ogk_B           41 CRRWFKIDSETR-EH---VTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK  115 (592)
T ss_dssp             CHHHHHHHHHHC-CE---EEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred             hHHHHHhhhccc-cE---EEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence            457998865422 12   22222 22233334466778888888877532   123332222            677888


Q ss_pred             eEEecCCCCCCccccccCCC--CCCcEEEcCCCC-CCCCcchhHhhccccccEEEeeccccccc----CCccCCCCCCCc
Q 047196          150 FLDFSDNQLSGSLSSVTFNL--SSVLDIRLDSDK-LSGELPVNICNYLHYLKVLFLAKNMFHGQ----IPLALSKCKRLQ  222 (827)
Q Consensus       150 ~LdLs~N~l~g~~p~~~~~l--~~L~~L~L~~n~-l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~  222 (827)
                      +|+|++|.+++..+..+...  .+|++|+|+.+. ++..--..+...+++|++|+|++|.+++.    ++..+.++++|+
T Consensus       116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~  195 (592)
T 3ogk_B          116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE  195 (592)
T ss_dssp             EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred             eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence            88888887776555444432  236666665554 11000011122234566666666655443    222334455666


Q ss_pred             EEEccCCCCc----ccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCc---ccCchhhhcCCCccE
Q 047196          223 LLNLGFKKLS----GAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLV---GVVPAAIFNMSTVKK  295 (827)
Q Consensus       223 ~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~  295 (827)
                      .|++++|.++    +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+...   +..+..+..+++|+.
T Consensus       196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~  274 (592)
T 3ogk_B          196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR  274 (592)
T ss_dssp             EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCE
T ss_pred             EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccc
Confidence            6666666554    2233334455556666666655553 4555555666666666542221   122233444455555


Q ss_pred             EEecCCccccccChhhhcCCCCccEEeCcCCccccccC-ccccCCCCCcEEEcC
Q 047196          296 IYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIP-SFITNASKLVYLDMG  348 (827)
Q Consensus       296 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls  348 (827)
                      ++++++. .+.+|..+. .+++|++|++++|.+++... ..+..+++|+.|+++
T Consensus       275 L~l~~~~-~~~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          275 LGLSYMG-PNEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EEETTCC-TTTGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cCccccc-hhHHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            5554431 122222221 34455555555555433222 223445555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.6e-32  Score=320.76  Aligned_cols=412  Identities=13%  Similarity=0.047  Sum_probs=280.4

Q ss_pred             CCccCChhhhhccccceEEecCCCC---CCccccccC------------CCCCCcEEEcCCCCCCCCcchhHhhcccc-c
Q 047196          134 LSGDIPPSIFTMHKLKFLDFSDNQL---SGSLSSVTF------------NLSSVLDIRLDSDKLSGELPVNICNYLHY-L  197 (827)
Q Consensus       134 l~g~~p~~~~~l~~L~~LdLs~N~l---~g~~p~~~~------------~l~~L~~L~L~~n~l~g~ip~~~~~~~~~-L  197 (827)
                      +....+..+..+++|++|+|+++..   .+.+|..+.            .+++|++|+|++|.+++..+..+....+. |
T Consensus        61 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L  140 (592)
T 3ogk_B           61 YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDL  140 (592)
T ss_dssp             GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGC
T ss_pred             cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccC
Confidence            3334455677899999999988643   133333322            68899999999998887777766664334 9


Q ss_pred             cEEEeeccc-ccc-cCCccCCCCCCCcEEEccCCCCccc----CCCcCcCCccccEEEccccccc----ccccccccCcC
Q 047196          198 KVLFLAKNM-FHG-QIPLALSKCKRLQLLNLGFKKLSGA----IPKEISNLTILRKISLRNNKLR----GEIPHEIGYLP  267 (827)
Q Consensus       198 ~~L~Ls~N~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~  267 (827)
                      ++|+|++|. ++. .++....++++|++|+|++|.+++.    ++..+.++++|++|++++|.++    +.++..+..++
T Consensus       141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~  220 (592)
T 3ogk_B          141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR  220 (592)
T ss_dssp             CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred             cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence            999999886 221 2233345788999999999988765    3334567889999999999987    45566667889


Q ss_pred             CCcEEEeecccCcccCchhhhcCCCccEEEecCCccc---cccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcE
Q 047196          268 NLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLL---GSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVY  344 (827)
Q Consensus       268 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  344 (827)
                      +|++|+|++|.+.+ +|..+.++++|+.|+++.....   +..+..+. .+++|+.|+++++. .+.+|..+..+++|++
T Consensus       221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-FPRKLCRLGLSYMG-PNEMPILFPFAAQIRK  297 (592)
T ss_dssp             TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-CCTTCCEEEETTCC-TTTGGGGGGGGGGCCE
T ss_pred             CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh-ccccccccCccccc-hhHHHHHHhhcCCCcE
Confidence            99999999998887 6788888999999999864322   11222222 56788888887753 3456777777888888


Q ss_pred             EEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEecc-----------C
Q 047196          345 LDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLE-----------G  413 (827)
Q Consensus       345 L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls-----------~  413 (827)
                      |++++|.+++...              +..+..++ +|++|+++++-..+.++..+..+++|+.|+++           .
T Consensus       298 L~Ls~~~l~~~~~--------------~~~~~~~~-~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~  362 (592)
T 3ogk_B          298 LDLLYALLETEDH--------------CTLIQKCP-NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE  362 (592)
T ss_dssp             EEETTCCCCHHHH--------------HHHHTTCT-TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred             EecCCCcCCHHHH--------------HHHHHhCc-CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence            8888887653211              11122333 78888888443334455555677888888888           3


Q ss_pred             ccccccc-cccccCCCCCcEEECCCCCCCCCCCccccc-cccccEEecC----CCccccc-----CCccccCCCCCCccc
Q 047196          414 NKLTGSI-PVTFGRLQKLQGLYLPFNKLAGSIPDQLCH-LARLNTLGLA----GNKFSGS-----IPSCLGNLTSLRSPD  482 (827)
Q Consensus       414 N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~L~  482 (827)
                      |.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|++++.     ++..+.++++|++|+
T Consensus       363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence            5665432 223455788888888878887766666554 7778888885    6677653     334456678888888


Q ss_pred             cCCCc--ccccCCcccc-ccccccccCCCCCCCCC-CCcccccccccCceEEcccceeeec-ccccccCCCCCCEEECCC
Q 047196          483 LGSNR--LTSVLPSTFW-NLKDILFFDLSSNSLDG-PLSLDIGNLRVVIGINLSRNNFSGD-IPSTIGDLKDLQNISLAC  557 (827)
Q Consensus       483 Ls~N~--l~~~~p~~~~-~l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~L~Ls~  557 (827)
                      ++++.  +++..+..+. .+++|+.|++++|.+++ .++..+..+++|+.|++++|.|++. ++..+..+++|+.|+|++
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence            86433  5554444443 36778888888888776 3455556777888888888887655 344456677888888888


Q ss_pred             Ccceee
Q 047196          558 NGLEGL  563 (827)
Q Consensus       558 N~l~g~  563 (827)
                      |++++.
T Consensus       523 n~it~~  528 (592)
T 3ogk_B          523 YRASMT  528 (592)
T ss_dssp             CBCCTT
T ss_pred             CcCCHH
Confidence            887654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=276.52  Aligned_cols=285  Identities=21%  Similarity=0.289  Sum_probs=212.1

Q ss_pred             CCCCCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCc
Q 047196           82 NTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGS  161 (827)
Q Consensus        82 ~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~  161 (827)
                      ...+|.|.|+ |+          +++++++ .+|..+.  ++|++|+|++|++++..+..|.++++|++|+|++|++++.
T Consensus        26 ~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (353)
T 2z80_A           26 ASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI   91 (353)
T ss_dssp             -CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence            4567999988 75          3455555 3455444  4788888888888876666788888888888888888877


Q ss_pred             cccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCC-ccCCCCCCCcEEEccCC-CCcccCCCcC
Q 047196          162 LSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIP-LALSKCKRLQLLNLGFK-KLSGAIPKEI  239 (827)
Q Consensus       162 ~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~~  239 (827)
                      .|..+.++++|++|++++|.++ .+|...+..+++|++|++++|.+++..+ ..+.++++|++|++++| .+++..|..+
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  170 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF  170 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             CHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence            7777888888888888888887 4666655556688888888888875433 47788888888888888 4666667778


Q ss_pred             cCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhh--cCCCC
Q 047196          240 SNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGID--LSLPN  317 (827)
Q Consensus       240 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~  317 (827)
                      +++++|++|++++|++++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+.+..+..+.  ...+.
T Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~  250 (353)
T 2z80_A          171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL  250 (353)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred             cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence            8888888888888888888888888888888888888888654444455688888888888888765433221  23566


Q ss_pred             ccEEeCcCCcccc----ccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCch-hcccccccEEEccCCcC
Q 047196          318 VERLNLGLNRFSG----TIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSI-GNLSMSLENIYISNCNI  392 (827)
Q Consensus       318 L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~-~~~~~~L~~L~Ls~N~l  392 (827)
                      ++.++++.+.+++    .+|..+..+++|+.|++++|+++. +|               ..+ ..++ +|++|++++|.+
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~---------------~~~~~~l~-~L~~L~L~~N~~  313 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VP---------------DGIFDRLT-SLQKIWLHTNPW  313 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CC---------------TTTTTTCT-TCCEEECCSSCB
T ss_pred             hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cC---------------HHHHhcCC-CCCEEEeeCCCc
Confidence            7888888888776    467778888889999998888873 22               222 3444 788899999998


Q ss_pred             ccccCc
Q 047196          393 GGSIPQ  398 (827)
Q Consensus       393 ~g~~p~  398 (827)
                      .+..|.
T Consensus       314 ~~~~~~  319 (353)
T 2z80_A          314 DCSCPR  319 (353)
T ss_dssp             CCCHHH
T ss_pred             cCcCCC
Confidence            888774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.4e-29  Score=272.21  Aligned_cols=283  Identities=19%  Similarity=0.209  Sum_probs=213.3

Q ss_pred             CCCCcCCCCCCC-CCCCCcccceecCCCCCcEEEEEcCCCCCccc----cCcc--ccCCCCCCEEECCCCCCCccCChhh
Q 047196           70 DPTNLLAQNSTS-NTSVCNWIGITCNVNSHRVTALNISSLNLQGT----IPPQ--LGNLSSLTTLNLSHNKLSGDIPPSI  142 (827)
Q Consensus        70 ~~~~~l~~w~~~-~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~----~~~~--l~~L~~L~~L~Ls~N~l~g~~p~~~  142 (827)
                      |+...+..|... ..|+|.|.++.|......     -.-....|.    ++..  -...+++++|+|++|+++ .+|+.+
T Consensus        27 ~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           27 PYHDVLSQWQRHYNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             CHHHHHHHHHHHHHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             hHHHHHHHHHHhccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            333456667521 247899999998422110     001112221    1111  123578999999999998 888889


Q ss_pred             hhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCc
Q 047196          143 FTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQ  222 (827)
Q Consensus       143 ~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  222 (827)
                      +++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+ ++|++|++++|++.+.+|..++..    
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l-~~L~~L~L~~n~~~~~~p~~~~~~----  173 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASL-NRLRELSIRACPELTELPEPLAST----  173 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGC-TTCCEEEEEEETTCCCCCSCSEEE----
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcC-cCCCEEECCCCCCccccChhHhhc----
Confidence            99999999999999998 77777777777777777666666 566555443 356666666665555555443321    


Q ss_pred             EEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCc
Q 047196          223 LLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNS  302 (827)
Q Consensus       223 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  302 (827)
                                 .++..+.++++|++|+|++|+++ .+|..++.+++|++|+|++|++++ +|..+..+++|+.|++++|.
T Consensus       174 -----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          174 -----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             -----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCT
T ss_pred             -----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCc
Confidence                       12233556999999999999999 889999999999999999999996 56679999999999999999


Q ss_pred             cccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccc
Q 047196          303 LLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSL  382 (827)
Q Consensus       303 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L  382 (827)
                      +.+.+|..+. .+++|++|++++|++.+.+|..+.++++|+.|++++|++.+.+               |..++.++ ++
T Consensus       241 ~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i---------------P~~l~~L~-~L  303 (328)
T 4fcg_A          241 ALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL---------------PSLIAQLP-AN  303 (328)
T ss_dssp             TCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC---------------CGGGGGSC-TT
T ss_pred             chhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc---------------cHHHhhcc-Cc
Confidence            9999998776 8999999999999999999999999999999999998877654               45667776 79


Q ss_pred             cEEEccCCcCccc
Q 047196          383 ENIYISNCNIGGS  395 (827)
Q Consensus       383 ~~L~Ls~N~l~g~  395 (827)
                      +.+++..+.+...
T Consensus       304 ~~l~l~~~~~~~l  316 (328)
T 4fcg_A          304 CIILVPPHLQAQL  316 (328)
T ss_dssp             CEEECCGGGSCC-
T ss_pred             eEEeCCHHHHHHH
Confidence            9999999888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=7.2e-29  Score=266.12  Aligned_cols=252  Identities=21%  Similarity=0.268  Sum_probs=175.9

Q ss_pred             CCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCC--cc
Q 047196           85 VCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG--SL  162 (827)
Q Consensus        85 ~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g--~~  162 (827)
                      .|.|.+|.|+..            +++ .+|..+.  ++|++|+|++|+++...+..|.++++|++|+|++|.++.  ..
T Consensus         6 ~C~~~~l~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~   70 (306)
T 2z66_A            6 SCSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC   70 (306)
T ss_dssp             EEETTEEECCSS------------CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred             eeCCCEEEcCCC------------Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence            389999999753            222 2333332  567777777777774444446777777777777777763  33


Q ss_pred             ccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCC-ccCCCCCCCcEEEccCCCCcccCCCcCcC
Q 047196          163 SSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIP-LALSKCKRLQLLNLGFKKLSGAIPKEISN  241 (827)
Q Consensus       163 p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  241 (827)
                      +..+..+++|++|++++|.+. .+|..+.. +++|++|++++|.+++..+ ..+.++++|++|++++|.+++..|..+.+
T Consensus        71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  148 (306)
T 2z66_A           71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  148 (306)
T ss_dssp             EHHHHSCSCCCEEECCSCSEE-EEEEEEET-CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred             ccccccccccCEEECCCCccc-cChhhcCC-CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence            555556677777777777666 35555443 4477777777777776554 56777888888888888887777777788


Q ss_pred             CccccEEEcccccccc-cccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccE
Q 047196          242 LTILRKISLRNNKLRG-EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVER  320 (827)
Q Consensus       242 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  320 (827)
                      +++|++|++++|.+++ .+|..+..+++|++|+|++|++++..|..+.++++|+.|++++|.+.+..+..+. .+++|+.
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~  227 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQV  227 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT-TCTTCCE
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc-CcccCCE
Confidence            8888888888888776 5677778888888888888888877777777777777777777776654443333 5677777


Q ss_pred             EeCcCCccccccCccccCCC-CCcEEEcCCCccee
Q 047196          321 LNLGLNRFSGTIPSFITNAS-KLVYLDMGTNSFSG  354 (827)
Q Consensus       321 L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g  354 (827)
                      |++++|++++..|..+..++ +|++|++++|.+++
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            77777777777777777663 77777777777664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.1e-28  Score=260.27  Aligned_cols=281  Identities=20%  Similarity=0.225  Sum_probs=160.0

Q ss_pred             cEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCccc--CchhhhcCCCccEEEec
Q 047196          222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV--VPAAIFNMSTVKKIYLL  299 (827)
Q Consensus       222 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~  299 (827)
                      +.++++++.++ .+|..+.  ++|++|+|++|+++...+..|..+++|++|+|++|+++..  .|..+..          
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----------   76 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG----------   76 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS----------
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc----------
Confidence            46777777776 4455443  5677888888887744444467777788888877777632  2444443          


Q ss_pred             CCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhccc
Q 047196          300 DNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLS  379 (827)
Q Consensus       300 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~  379 (827)
                                     +++|++|++++|+++. +|..+..+++|++|++++|.+++..+.              ..+..+.
T Consensus        77 ---------------~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~--------------~~~~~l~  126 (306)
T 2z66_A           77 ---------------TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF--------------SVFLSLR  126 (306)
T ss_dssp             ---------------CSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT--------------TTTTTCT
T ss_pred             ---------------ccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc--------------hhhhhcc
Confidence                           4455555555555552 444455666666666666665543220              1122222


Q ss_pred             ccccEEEccCCcCccccCccccCCCCCceEeccCccccc-cccccccCCCCCcEEECCCCCCCCCCCccccccccccEEe
Q 047196          380 MSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG-SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLG  458 (827)
Q Consensus       380 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  458 (827)
                       +|++|++++|.+++..|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|++++..|..+..+++|+.|+
T Consensus       127 -~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          127 -NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             -TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             -CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence             56666666666666666666666666666666666665 4556666666666666666666655566666666666666


Q ss_pred             cCCCcccccCCccccCCCCCCccccCCCcccccCCcccccc-ccccccCCCCCCCCCCCcc--cccccccCceEEcccce
Q 047196          459 LAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNL-KDILFFDLSSNSLDGPLSL--DIGNLRVVIGINLSRNN  535 (827)
Q Consensus       459 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~LdLs~N~l~g~~p~--~~~~l~~L~~L~Ls~N~  535 (827)
                      +++|++++..+..+..+++|++||+++|.+++..|..+..+ ++|++|+|++|.+++..+.  ....++..+.+....+.
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~  285 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER  285 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence            66666665444455556666666666666666555555555 2555555555555543211  11122223333444455


Q ss_pred             eeecccccccC
Q 047196          536 FSGDIPSTIGD  546 (827)
Q Consensus       536 l~g~ip~~~~~  546 (827)
                      +.+..|+.+.+
T Consensus       286 ~~C~~p~~~~g  296 (306)
T 2z66_A          286 MECATPSDKQG  296 (306)
T ss_dssp             CBEEESGGGTT
T ss_pred             cccCCchhhCC
Confidence            55555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.7e-30  Score=276.88  Aligned_cols=267  Identities=16%  Similarity=0.135  Sum_probs=173.1

Q ss_pred             CCCCCCCCCCCCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCC-CccCChhhh-------hcc
Q 047196           75 LAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKL-SGDIPPSIF-------TMH  146 (827)
Q Consensus        75 l~~w~~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l-~g~~p~~~~-------~l~  146 (827)
                      ...|. ....|+.|..+.......+++.|++++|.+  .+|..+...  |++|+|++|.+ .+.+|..+.       +++
T Consensus        21 ~~~~~-~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~   95 (312)
T 1wwl_A           21 KPDWS-SAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS   95 (312)
T ss_dssp             SCCGG-GGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS
T ss_pred             ccchH-HHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC
Confidence            34565 344566665544322234677777888887  666655544  77888888888 456777665       678


Q ss_pred             ccceEEecCCCCCCcccccc--CCCCCCcEEEcCCCCCCCCcchhHhhc----cccccEEEeecccccccCCccCCCCCC
Q 047196          147 KLKFLDFSDNQLSGSLSSVT--FNLSSVLDIRLDSDKLSGELPVNICNY----LHYLKVLFLAKNMFHGQIPLALSKCKR  220 (827)
Q Consensus       147 ~L~~LdLs~N~l~g~~p~~~--~~l~~L~~L~L~~n~l~g~ip~~~~~~----~~~L~~L~Ls~N~l~~~~p~~l~~l~~  220 (827)
                      +|++|+|++|++++.+|..+  ..+++|++|+|++|.+++. |..+...    .++|++|+|++|++++..|..|+++++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            88888888888888777765  7788888888888888765 6555543    157777777777777777777777777


Q ss_pred             CcEEEccCCCCccc--CCCcC--cCCccccEEEcccccccc--ccc-ccccCcCCCcEEEeecccCcccCc-hhhhcCCC
Q 047196          221 LQLLNLGFKKLSGA--IPKEI--SNLTILRKISLRNNKLRG--EIP-HEIGYLPNLENLVLGFNNLVGVVP-AAIFNMST  292 (827)
Q Consensus       221 L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  292 (827)
                      |++|++++|++.+.  +|..+  +++++|++|+|++|++++  .++ ..+..+++|++|+|++|++++..| ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            77777777776654  23333  667777777777777762  222 233566777777777777776654 33444566


Q ss_pred             ccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcce
Q 047196          293 VKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFS  353 (827)
Q Consensus       293 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  353 (827)
                      |++|++++|.++ .+|..+.   ++|++|+|++|++++. |. +..+++|++|++++|.++
T Consensus       255 L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             CCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            666666666665 4444332   5566666666666554 43 555566666666655554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.3e-28  Score=284.62  Aligned_cols=107  Identities=26%  Similarity=0.364  Sum_probs=61.2

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|+.|++++|.++. +|..   +++|+.|++++|++++ +|   ..+++|+.|+|++|+++ .+|.   .+++|+.|+|+
T Consensus       202 ~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          202 ELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY  269 (622)
T ss_dssp             TCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             hhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence            45555555555552 3322   3556666666666664 33   33456666666666665 3444   34566666666


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLK  500 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  500 (827)
                      +|+++ .+|..+.++++|+.|+|++|.+++..|..+..++
T Consensus       270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            66666 5566666666666666666666666555544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.6e-28  Score=267.34  Aligned_cols=258  Identities=16%  Similarity=0.117  Sum_probs=147.5

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++++|++++..+..++.+++|++|+|+
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            67777777777776666677778888888888888877777777778888888888888775555557777888888888


Q ss_pred             cccCcccCc-hhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCccee
Q 047196          276 FNNLVGVVP-AAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSG  354 (827)
Q Consensus       276 ~N~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  354 (827)
                      +|++++..+ ..+.++++|++|++++|...+.++......+++|++|++++|++++..|..+..+++|++|++++|.++.
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            887775433 3566666666666666643333332222355566666666666665556566555555555555555431


Q ss_pred             ecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEE
Q 047196          355 IIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLY  434 (827)
Q Consensus       355 ~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  434 (827)
                      .                |..+.....+|++|++++|++++..+..+..                     ......++.++
T Consensus       213 ~----------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~  255 (353)
T 2z80_A          213 L----------------LEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------GETNSLIKKFT  255 (353)
T ss_dssp             H----------------HHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEE
T ss_pred             c----------------hhhhhhhcccccEEECCCCcccccccccccc---------------------ccccchhhccc
Confidence            1                1111111114555555555554433322211                     11233444444


Q ss_pred             CCCCCCCC----CCCccccccccccEEecCCCcccccCCcc-ccCCCCCCccccCCCccccc
Q 047196          435 LPFNKLAG----SIPDQLCHLARLNTLGLAGNKFSGSIPSC-LGNLTSLRSPDLGSNRLTSV  491 (827)
Q Consensus       435 Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~  491 (827)
                      |++|.+++    .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|.+.+.
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            44444443    24444555555555555555555 34433 35555666666666655543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.2e-29  Score=270.85  Aligned_cols=252  Identities=19%  Similarity=0.199  Sum_probs=159.5

Q ss_pred             ccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHh------
Q 047196          118 LGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNIC------  191 (827)
Q Consensus       118 l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~------  191 (827)
                      ++..++|++|++++|.+  .+|..+...  |++|+|++|++...                       .+|..+.      
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~-----------------------~~~~~~~~~~~~~   91 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAA-----------------------RIPSRILFGALRV   91 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEE-----------------------ECBHHHHHHHHHH
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCC-----------------------CcCHHHHHHHHHh
Confidence            56677888999999998  788877766  88889998888421                       2343332      


Q ss_pred             hccccccEEEeecccccccCCccC--CCCCCCcEEEccCCCCcccCCCcCcCC-----ccccEEEccccccccccccccc
Q 047196          192 NYLHYLKVLFLAKNMFHGQIPLAL--SKCKRLQLLNLGFKKLSGAIPKEISNL-----TILRKISLRNNKLRGEIPHEIG  264 (827)
Q Consensus       192 ~~~~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~  264 (827)
                      ..+++|++|+|++|.+++.+|..+  +.+++|++|++++|.+++. |..++.+     ++|++|+|++|++++..|..|+
T Consensus        92 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A           92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             HTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             cCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence            013477788888888777777765  7777888888888887766 6666666     7777777777777776667777


Q ss_pred             CcCCCcEEEeecccCcccC--chhh--hcCCCccEEEecCCcccc--ccChhhhcCCCCccEEeCcCCccccccC-cccc
Q 047196          265 YLPNLENLVLGFNNLVGVV--PAAI--FNMSTVKKIYLLDNSLLG--SFSLGIDLSLPNVERLNLGLNRFSGTIP-SFIT  337 (827)
Q Consensus       265 ~l~~L~~L~Ls~N~l~~~~--p~~~--~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~  337 (827)
                      .+++|++|+|++|++.+.+  |..+  .++++|++|++++|.+.+  .++..++..+++|++|++++|++++.+| ..+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            7777777777777776542  2233  445555555555555442  2222222234444555555444444332 2222


Q ss_pred             CCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcccc
Q 047196          338 NASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT  417 (827)
Q Consensus       338 ~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  417 (827)
                      .++                                        +|++|++++|+++ .+|..+.  ++|+.|||++|+++
T Consensus       251 ~l~----------------------------------------~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          251 WPS----------------------------------------QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             CCT----------------------------------------TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred             hcC----------------------------------------CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence            333                                        4556666666665 4555444  66666777777666


Q ss_pred             ccccccccCCCCCcEEECCCCCCCC
Q 047196          418 GSIPVTFGRLQKLQGLYLPFNKLAG  442 (827)
Q Consensus       418 g~~p~~~~~l~~L~~L~Ls~N~l~g  442 (827)
                      +. |. +..+++|++|+|++|.+++
T Consensus       288 ~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          288 RN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CC-hh-HhhCCCCCEEeccCCCCCC
Confidence            55 44 6667777777777776664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.9e-27  Score=266.20  Aligned_cols=234  Identities=23%  Similarity=0.305  Sum_probs=183.2

Q ss_pred             cCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhc
Q 047196          114 IPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNY  193 (827)
Q Consensus       114 ~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~  193 (827)
                      +|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+.++++|++|+|++|.++ .+|...+..
T Consensus        69 iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~  145 (452)
T 3zyi_A           69 VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEY  145 (452)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSS
T ss_pred             cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcc
Confidence            444443  57888888888888877888888888888888888888877778888888888888888887 466655555


Q ss_pred             cccccEEEeecccccccCCccCCCCCCCcEEEccCC-CCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEE
Q 047196          194 LHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFK-KLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENL  272 (827)
Q Consensus       194 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  272 (827)
                      +++|++|+|++|.++...+..|.++++|+.|++++| .+....+..|.++++|++|+|++|++++ +| .+..+++|++|
T Consensus       146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L  223 (452)
T 3zyi_A          146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEEL  223 (452)
T ss_dssp             CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEE
T ss_pred             cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEE
Confidence            668888888888888777778888888888888884 4444444568888888888888888874 34 57788888888


Q ss_pred             EeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcc
Q 047196          273 VLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSF  352 (827)
Q Consensus       273 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  352 (827)
                      +|++|++++..|..+.++++|+.|++++|.+.+..+..+. .+++|+.|+|++|++++..+..+..+++|+.|++++|.+
T Consensus       224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            8888888888888888888888888888887766555544 678888888888888877777778888888888888876


Q ss_pred             e
Q 047196          353 S  353 (827)
Q Consensus       353 ~  353 (827)
                      .
T Consensus       303 ~  303 (452)
T 3zyi_A          303 N  303 (452)
T ss_dssp             E
T ss_pred             C
Confidence            5

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.95  E-value=3.1e-28  Score=261.60  Aligned_cols=150  Identities=23%  Similarity=0.430  Sum_probs=113.6

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|...++||+|+||+||+|+++      +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+..++
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            45667789999999999999864      478899999987766677889999999999999999999999988775544


Q ss_pred             --eeeccC-----------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          749 --DCLHST-----------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       749 --~~l~~~-----------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                        +++..+                       ...++|.+++.|+.|||+||+|||   +++||||||||+|||       
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~  197 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVV  197 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcE
Confidence              333211                       124788999999999999999996   467999999999998       


Q ss_pred             ---eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                         |||+|+.+...... ..+..+||++|||||++
T Consensus       198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~  232 (329)
T 4aoj_A          198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI  232 (329)
T ss_dssp             EECCCC----------------CCCCGGGCCHHHH
T ss_pred             EEcccccceeccCCCcceecCcccccccccChhhh
Confidence               99999977543322 22335699999999974

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.95  E-value=3.2e-28  Score=257.86  Aligned_cols=150  Identities=27%  Similarity=0.432  Sum_probs=119.5

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|...+.||+|+||+||+|++.      +|+.||||+++.......++|.+|+++|++++|||||+++|+|.+++..++
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            45777889999999999999863      478899999987666677889999999999999999999999988765544


Q ss_pred             --eeeccC---------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          749 --DCLHST---------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       749 --~~l~~~---------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                        +++..+                     ...++|.++..|+.|||+||+|||   +++||||||||+|||         
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki  169 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI  169 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEE
Confidence              333221                     135788999999999999999996   568999999999998         


Q ss_pred             -eecccccccCCCccc-cccceecccccccccC
Q 047196          797 -DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                       |||+|+......... .....||++|||||++
T Consensus       170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~  202 (299)
T 4asz_A          170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  202 (299)
T ss_dssp             CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHH
T ss_pred             CCcccceecCCCCceeecCceecChhhcCHHHH
Confidence             999999765433222 2234599999999974

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=9.7e-29  Score=266.44  Aligned_cols=169  Identities=21%  Similarity=0.188  Sum_probs=90.6

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCcccc-ccccccEEec
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLC-HLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~L  459 (827)
                      +|++|++++|++++..+..   +++|+.|++++|++++..|..++.+++|++|+|++|++++..|..+. .+++|++|++
T Consensus       100 ~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            4555555555555433322   34555666666666555555555555666666666655554444442 4555666666


Q ss_pred             CCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceee-e
Q 047196          460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFS-G  538 (827)
Q Consensus       460 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g  538 (827)
                      ++|++++. |. ...+++|++|+|++|.+++..+ .+..+++|+.|+|++|.+++ +|..+..++.|+.|++++|+++ +
T Consensus       177 ~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          177 QYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             TTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             CCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCc
Confidence            66665543 21 2235566666666666654332 35555555555555555552 4445555555555555555555 4


Q ss_pred             cccccccCCCCCCEEECC
Q 047196          539 DIPSTIGDLKDLQNISLA  556 (827)
Q Consensus       539 ~ip~~~~~l~~L~~L~Ls  556 (827)
                      .+|..++.++.|+.|+++
T Consensus       253 ~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          253 TLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             HHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHhccccceEEECC
Confidence            555555555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2e-26  Score=261.07  Aligned_cols=228  Identities=21%  Similarity=0.215  Sum_probs=146.5

Q ss_pred             ccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEe
Q 047196          195 HYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL  274 (827)
Q Consensus       195 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  274 (827)
                      +++++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            37889999999998888888999999999999999999888888999999999999999998777777888999999999


Q ss_pred             ecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCccee
Q 047196          275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSG  354 (827)
Q Consensus       275 s~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  354 (827)
                      ++|+++...+..+.++++|+.|++++|+..+.++.                        ..+.++++|++|++++|++++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------------------------~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE------------------------GAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT------------------------TTTTTCTTCCEEECTTSCCSS
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh------------------------hhccCCCCCCEEECCCCcccc
Confidence            99998876666666666666666665444333333                        234445555555555554432


Q ss_pred             ecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEE
Q 047196          355 IIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLY  434 (827)
Q Consensus       355 ~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  434 (827)
                      . |                .+..+. +|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|+
T Consensus       211 ~-~----------------~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  272 (452)
T 3zyi_A          211 M-P----------------NLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN  272 (452)
T ss_dssp             C-C----------------CCTTCT-TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             c-c----------------cccccc-cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence            1 1                011111 445555555555544455555555555555555555555455555555555555


Q ss_pred             CCCCCCCCCCCccccccccccEEecCCCcc
Q 047196          435 LPFNKLAGSIPDQLCHLARLNTLGLAGNKF  464 (827)
Q Consensus       435 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  464 (827)
                      |++|++++..+..+..+++|+.|+|++|.+
T Consensus       273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            555555444444444444444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.5e-28  Score=263.28  Aligned_cols=267  Identities=19%  Similarity=0.144  Sum_probs=132.5

Q ss_pred             cEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecc
Q 047196          198 KVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN  277 (827)
Q Consensus       198 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  277 (827)
                      +..+++.+.+...++..+..+++|++|++++|.+++..|..+.++++|++|+|++|++++..|  +..+++|++|+|++|
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            333444444433333333344445555555555554444445555555555555555544332  445555555555555


Q ss_pred             cCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecC
Q 047196          278 NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIP  357 (827)
Q Consensus       278 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  357 (827)
                      ++++..     ..++|+.|++++|.+.+..+.    .+++|+.|++++|++++..|..+..+++|++|++++|       
T Consensus        91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-------  154 (317)
T 3o53_A           91 YVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-------  154 (317)
T ss_dssp             EEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-------
T ss_pred             cccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-------
Confidence            544321     113333333333333322111    2344555555555555544444444444444444444       


Q ss_pred             CCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccc-cCCCCCceEeccCccccccccccccCCCCCcEEECC
Q 047196          358 NTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI-SNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP  436 (827)
Q Consensus       358 ~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  436 (827)
                                                       .+++..|..+ ..+++|++|+|++|++++..  ....+++|++|+|+
T Consensus       155 ---------------------------------~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls  199 (317)
T 3o53_A          155 ---------------------------------EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLS  199 (317)
T ss_dssp             ---------------------------------CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECC
T ss_pred             ---------------------------------CCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECC
Confidence                                             4444433333 24555555555555555432  12235566666666


Q ss_pred             CCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCccc-ccCCccccccccccccCCC-CCCCCC
Q 047196          437 FNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLT-SVLPSTFWNLKDILFFDLS-SNSLDG  514 (827)
Q Consensus       437 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs-~N~l~g  514 (827)
                      +|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++ .+.++|
T Consensus       200 ~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          200 SNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             SSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             CCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            666653 3334556666666666666665 35555666666666666666666 5556666666666666666 334455


Q ss_pred             CCccc
Q 047196          515 PLSLD  519 (827)
Q Consensus       515 ~~p~~  519 (827)
                      ..|..
T Consensus       278 ~~~~~  282 (317)
T 3o53_A          278 QNEEE  282 (317)
T ss_dssp             SSSCC
T ss_pred             Cchhc
Confidence            44433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3e-26  Score=258.74  Aligned_cols=242  Identities=23%  Similarity=0.307  Sum_probs=190.3

Q ss_pred             cCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCC
Q 047196          105 ISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSG  184 (827)
Q Consensus       105 L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g  184 (827)
                      .++.+++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|.+++..+..+.++++|++|+|++|+++ 
T Consensus        50 c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-  125 (440)
T 3zyj_A           50 CVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-  125 (440)
T ss_dssp             CCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-
T ss_pred             eCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-
Confidence            3344454 3455444  67888899999888888888888889999999999888877788888888888888888887 


Q ss_pred             CcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCC-CCcccCCCcCcCCccccEEEcccccccccccccc
Q 047196          185 ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFK-KLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI  263 (827)
Q Consensus       185 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  263 (827)
                      .+|...+..+++|++|+|++|.++...+..|.++++|+.|++++| .++...+..|.++++|++|+|++|+++ .+| .+
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~  203 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NL  203 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CC
T ss_pred             eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-cc
Confidence            466655555668888888888888777778888899999999884 444444456888889999999999887 455 47


Q ss_pred             cCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCc
Q 047196          264 GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLV  343 (827)
Q Consensus       264 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  343 (827)
                      ..+++|++|+|++|++++..|..|.++++|+.|++++|.+.+..+..+. .+++|+.|+|++|++++..+..+..+++|+
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCCC
Confidence            8888899999999988888888888888888888888887766554443 678888888888888877777778888888


Q ss_pred             EEEcCCCcce
Q 047196          344 YLDMGTNSFS  353 (827)
Q Consensus       344 ~L~Ls~N~l~  353 (827)
                      .|++++|.+.
T Consensus       283 ~L~L~~Np~~  292 (440)
T 3zyj_A          283 RIHLHHNPWN  292 (440)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEcCCCCcc
Confidence            8888888764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.94  E-value=7.5e-28  Score=255.06  Aligned_cols=148  Identities=26%  Similarity=0.503  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-eeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-KALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-~~l~~l  751 (827)
                      +++...+.||+|+||+||+|++++  .||||+++..  .....++|.+|++++++++|||||+++|+|.++.. .+++++
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~  113 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWC  113 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcC
Confidence            456777899999999999998764  6999998643  34556789999999999999999999999976553 233333


Q ss_pred             cc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-c
Q 047196          752 HS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-I  811 (827)
Q Consensus       752 ~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-~  811 (827)
                      ..         ....++|.++..|+.|||+||+|||   +++||||||||+|||          |||+|+........ .
T Consensus       114 ~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~  190 (307)
T 3omv_A          114 EGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQ  190 (307)
T ss_dssp             SSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC---------
T ss_pred             CCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCccee
Confidence            22         2346889999999999999999996   468999999999998          99999876543222 2


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||++|||||++
T Consensus       191 ~~~~~GT~~ymAPE~l  206 (307)
T 3omv_A          191 VEQPTGSVLWMAPEVI  206 (307)
T ss_dssp             ---CCCCTTSCCHHHH
T ss_pred             ecccccCCCccCHHHh
Confidence            2335699999999974

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=7.6e-27  Score=247.66  Aligned_cols=207  Identities=23%  Similarity=0.227  Sum_probs=118.2

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCcc-ccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEec
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNK-LTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  459 (827)
                      +|++|++++|.+++..|..|..+++|++|++++|+ +.+..|..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL  136 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence            34444444444444444455555555555555554 44444555555555555555555555555555555555666666


Q ss_pred             CCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeec
Q 047196          460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGD  539 (827)
Q Consensus       460 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~  539 (827)
                      ++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..++.++.|+.|++++|++++.
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence            66655544444455556666666666666555555555566666666666666665566666666666666666666655


Q ss_pred             ccccccCCCCCCEEECCCCcceeecCCC--CcCCceEeCcCCcCeecCCC
Q 047196          540 IPSTIGDLKDLQNISLACNGLEGLIPES--FGYLTELNLSFNKLEGEIPR  587 (827)
Q Consensus       540 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~--~~~L~~L~ls~N~l~g~ip~  587 (827)
                      .+..+..+++|+.|++++|.+....+..  +..++.++.+.|.+.+..|.
T Consensus       217 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESG
T ss_pred             CHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCch
Confidence            5555666666666666666665543321  12344455666777766665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.3e-27  Score=248.83  Aligned_cols=254  Identities=18%  Similarity=0.162  Sum_probs=180.4

Q ss_pred             EEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCC
Q 047196          101 TALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSD  180 (827)
Q Consensus       101 ~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n  180 (827)
                      +.++.++++++. +|..+  .++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..+.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            455666666653 34333  457888888888888766677888888888888888888777777888888888888888


Q ss_pred             CCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccc
Q 047196          181 KLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIP  260 (827)
Q Consensus       181 ~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  260 (827)
                      ...+.++...+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..++++++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            73334544334445588888888888887777778888888888888888887666677888888888888888876666


Q ss_pred             ccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCC
Q 047196          261 HEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNAS  340 (827)
Q Consensus       261 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  340 (827)
                      ..+..+++|++|+|++|.+++..|..+.++++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+....+.. .-..
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~~~c~~~~~-~~~~  248 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNPWVCDCRAR-PLWA  248 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc-ccCcccCEEeccCCCccCCCCcH-HHHH
Confidence            667888888888888888888878888888888888888888776433333 37788888888888877543321 1111


Q ss_pred             CCcEEEcCCCcceeecCCC
Q 047196          341 KLVYLDMGTNSFSGIIPNT  359 (827)
Q Consensus       341 ~L~~L~Ls~N~l~g~~p~~  359 (827)
                      .++.+..+.+.+....|..
T Consensus       249 ~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHHHCCSEECCCBEEESGG
T ss_pred             HHHhcccccCccccCCchH
Confidence            2333345556666666643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6.7e-26  Score=255.92  Aligned_cols=107  Identities=26%  Similarity=0.335  Sum_probs=63.1

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus       186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (440)
T 3zyj_A          186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA  263 (440)
T ss_dssp             SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred             ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence            3444444444444 222 24455566666666666665556666666666666666666665556666666666666666


Q ss_pred             CCcccccCCccccCCCCCCccccCCCccc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLT  489 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  489 (827)
                      +|++++..+..+..+++|+.|+|++|.+.
T Consensus       264 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          264 HNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            66666555555666666666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=5.4e-26  Score=264.69  Aligned_cols=265  Identities=24%  Similarity=0.321  Sum_probs=140.6

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      ++++|++++|.++ .+|..+.  ++|++|++++|.++. +|.   .+++|++|+|++|+++ .+|.   .+++|++|+|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            5888888888887 6676655  678888888888773 444   4677777777777776 3554   56777777777


Q ss_pred             cccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceee
Q 047196          276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       276 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  355 (827)
                      +|++++. |.   .                         +++|+.|++++|++++ +|..   +++|++|++++|++++.
T Consensus       110 ~N~l~~l-~~---~-------------------------l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          110 SNPLTHL-PA---L-------------------------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             SCCCCCC-CC---C-------------------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred             CCcCCCC-CC---C-------------------------CCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc
Confidence            7776653 22   2                         2345555555555543 3322   24555555555555431


Q ss_pred             cCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEEC
Q 047196          356 IPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL  435 (827)
Q Consensus       356 ~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  435 (827)
                       |               ..    ..+|+.|++++|++++ +|   ..+++|+.|++++|++++ +|.   .+++|+.|++
T Consensus       157 -~---------------~~----~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L  208 (622)
T 3g06_A          157 -P---------------AL----PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWA  208 (622)
T ss_dssp             -C---------------CC----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             -C---------------Cc----cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEEC
Confidence             1               00    0145556666666653 33   234556666666666554 222   1345555555


Q ss_pred             CCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCC
Q 047196          436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGP  515 (827)
Q Consensus       436 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  515 (827)
                      ++|.++ .+|..   +++|+.|++++|++++ +|   ..+++|+.|+|++|.|++ +|.   .+++|+.|+|++|+++ .
T Consensus       209 ~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~  275 (622)
T 3g06_A          209 YNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-R  275 (622)
T ss_dssp             CSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-S
T ss_pred             cCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-c
Confidence            555555 23322   2445555555555553 33   233445555555555543 222   2334444444444444 3


Q ss_pred             CcccccccccCceEEcccceeeeccccccc
Q 047196          516 LSLDIGNLRVVIGINLSRNNFSGDIPSTIG  545 (827)
Q Consensus       516 ~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~  545 (827)
                      +|..+.++++|+.|+|++|++++.+|..+.
T Consensus       276 lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          276 LPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            344444444444444444444444444333

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.94  E-value=1.8e-27  Score=253.18  Aligned_cols=149  Identities=26%  Similarity=0.400  Sum_probs=115.9

Q ss_pred             cccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      +++..+.||+|+||+||+|++.      +++.||||+++... ....++|.+|++++++++|||||+++|+|.+++..++
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence            3455678999999999999863      46889999996543 2345789999999999999999999999987665443


Q ss_pred             --eeeccC------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------
Q 047196          749 --DCLHST------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------  796 (827)
Q Consensus       749 --~~l~~~------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------  796 (827)
                        +++..+                        ...++|.++++|+.|||+||+|||   +++||||||||+|||      
T Consensus       107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~  183 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLN  183 (308)
T ss_dssp             EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGC
T ss_pred             EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCCC
Confidence              332211                        124788899999999999999996   567999999999998      


Q ss_pred             ----eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 ----DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                          |||+|+.+...... ..+..+||++|||||++
T Consensus       184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l  219 (308)
T 4gt4_A          184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAI  219 (308)
T ss_dssp             EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHH
T ss_pred             EEECCcccceeccCCCceeEecccccCCcccCHHHH
Confidence                99999977543322 22345699999999974

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.94  E-value=3e-27  Score=253.58  Aligned_cols=149  Identities=24%  Similarity=0.259  Sum_probs=122.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +.|+..+.||+|+||+||+|+.. +|+.||||++........+.+.+|+++|++++|||||++++++.+++..++...+.
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            45888899999999999999864 69999999997654444567899999999999999999999998887655533332


Q ss_pred             C---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 T---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      .         ...+.+.+...++.|++.||+|||   +++||||||||+|||          |||+|+.+...... ...
T Consensus       154 ~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~-~~~  229 (346)
T 4fih_A          154 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR-RKS  229 (346)
T ss_dssp             TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC-BCC
T ss_pred             CCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc-ccc
Confidence            2         245777888899999999999996   568999999999998          99999987654332 234


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      .+||+.|||||++
T Consensus       230 ~~GTp~YmAPEvl  242 (346)
T 4fih_A          230 LVGTPYWMAPELI  242 (346)
T ss_dssp             CCSCGGGCCHHHH
T ss_pred             cccCcCcCCHHHH
Confidence            6799999999974

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=3.6e-26  Score=240.40  Aligned_cols=218  Identities=25%  Similarity=0.364  Sum_probs=166.7

Q ss_pred             CCCCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCcc
Q 047196           83 TSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSL  162 (827)
Q Consensus        83 ~~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~  162 (827)
                      .++|.|.|+.|+-. +.++.+++++++++. +|..+.  ++|++|+|++|++++..+..|.++++|++|+|++|.++...
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            47999999999643 356789999999985 666554  68999999999999877778999999999999999999766


Q ss_pred             ccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCC
Q 047196          163 SSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNL  242 (827)
Q Consensus       163 p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  242 (827)
                      +..+.++++|++|++++|.+++ +|...+..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..+..+
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence            6667788888888888888874 555555445577888888777777777777777777777777777776666667777


Q ss_pred             ccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCcccc
Q 047196          243 TILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLG  305 (827)
Q Consensus       243 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~  305 (827)
                      ++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus       157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            777777777777776666667777777777777777776555556666666666666665543

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.94  E-value=1.4e-26  Score=243.50  Aligned_cols=146  Identities=27%  Similarity=0.387  Sum_probs=113.9

Q ss_pred             cccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecC----C--ceee
Q 047196          678 SKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNE----D--FKAL  748 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~----~--~~~l  748 (827)
                      ...++||+|+||+||+|+.. +++.||||++...  .....++|.+|++++++++|||||++++++...    .  +.++
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            45567999999999999865 6899999999643  234567899999999999999999999998542    2  2333


Q ss_pred             eeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCc
Q 047196          749 DCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 ~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~  809 (827)
                      +++..+        ...+++.....++.||++||+|||. +.++||||||||+|||           |||+|+...... 
T Consensus       109 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~-~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~-  186 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF-  186 (290)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT-SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTS-
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCc-
Confidence            444332        2356777888999999999999974 3456999999999998           999998654322 


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                        ....+||++|||||++
T Consensus       187 --~~~~~GTp~YmAPE~~  202 (290)
T 3fpq_A          187 --AKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             --BEESCSSCCCCCGGGG
T ss_pred             --cCCcccCccccCHHHc
Confidence              2345699999999974

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.94  E-value=6.4e-27  Score=249.50  Aligned_cols=151  Identities=27%  Similarity=0.406  Sum_probs=114.6

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------ceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------FKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------~~~l  748 (827)
                      ++|...+.||+|+||+||+|++ +|+.||||++..... ....+++|+..+.+++|||||+++|+|.+++      +.++
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            3566778999999999999998 489999999965432 2233456777778899999999999998654      2334


Q ss_pred             eeeccC-------CCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEccCCCccee----------eecccccccC
Q 047196          749 DCLHST-------NCSLNIFDKLNIMIDVASALEYLHFS-----HSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       749 ~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~Lh~~-----h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      +++..+       ...++|.++.+++.++|+||+|||..     |.++||||||||+|||          |||+|+....
T Consensus        81 Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~  160 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS  160 (303)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred             cCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccC
Confidence            444322       23578889999999999999999954     5779999999999999          9999998755


Q ss_pred             CCccc---cccceecccccccccC
Q 047196          807 DRSMI---QTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~---~~~~~gt~~Y~APE~l  827 (827)
                      .....   ....+||++|||||++
T Consensus       161 ~~~~~~~~~~~~~GT~~ymAPE~l  184 (303)
T 3hmm_A          161 ATDTIDIAPNHRVGTKRYMAPEVL  184 (303)
T ss_dssp             TTTEESCC-----CCGGGCCHHHH
T ss_pred             CCCceeeecccccccccccCHHHh
Confidence            43321   1234699999999974

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.94  E-value=8.4e-27  Score=246.37  Aligned_cols=150  Identities=28%  Similarity=0.392  Sum_probs=121.3

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..++||+|+||+||+|+. .+|+.||||++.+..   ....+.+.+|+++|++++|||||++++++.+++..++..
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5799999999999999999986 469999999997532   223567999999999999999999999998887655433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...++..+...++.|++.||+|||   +++|+||||||+|||          |||+|+.+......
T Consensus       112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~  188 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ  188 (311)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTC
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCc
Confidence            3322          235677777889999999999996   578999999999999          99999987544332


Q ss_pred             -ccccceecccccccccC
Q 047196          811 -IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 -~~~~~~gt~~Y~APE~l  827 (827)
                       ...+.+||+.|||||++
T Consensus       189 ~~~~~~~GTp~YmAPEvl  206 (311)
T 4aw0_A          189 ARANSFVGTAQYVSPELL  206 (311)
T ss_dssp             CCBCCCCSCGGGCCHHHH
T ss_pred             ccccCcccCcccCCHHHH
Confidence             22345799999999974

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.93  E-value=1.5e-26  Score=254.38  Aligned_cols=149  Identities=24%  Similarity=0.259  Sum_probs=122.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      +.|+..+.||+|+||+||+|+.. +|+.||||++........+.+.+|+++|++++|||||++++++..++..++...+.
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence            46888899999999999999864 69999999997654444567899999999999999999999998887655533332


Q ss_pred             C---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 T---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      .         ...+.+.+...|+.|+++||+|||   +++||||||||+|||          |||+|+.+...... ...
T Consensus       231 ~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~-~~~  306 (423)
T 4fie_A          231 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR-RKS  306 (423)
T ss_dssp             TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC-BCC
T ss_pred             CCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCcc-ccc
Confidence            2         234677788899999999999996   568999999999998          99999987554332 244


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      .+||+.|||||++
T Consensus       307 ~~GTp~YmAPEvl  319 (423)
T 4fie_A          307 LVGTPYWMAPELI  319 (423)
T ss_dssp             CEECTTTCCHHHH
T ss_pred             cccCcCcCCHHHH
Confidence            6799999999974

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.5e-29  Score=295.50  Aligned_cols=426  Identities=12%  Similarity=0.083  Sum_probs=226.6

Q ss_pred             CCcccceecCCCCCcEEEEEcCCCCCccccC-ccccCCCCCCEEECCCCCCCc---cCC------------hhhhhcccc
Q 047196           85 VCNWIGITCNVNSHRVTALNISSLNLQGTIP-PQLGNLSSLTTLNLSHNKLSG---DIP------------PSIFTMHKL  148 (827)
Q Consensus        85 ~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~-~~l~~L~~L~~L~Ls~N~l~g---~~p------------~~~~~l~~L  148 (827)
                      |++|.++...    ..+.++++...  +..+ ..+..+++|++|+|+++....   ..|            .....+++|
T Consensus        34 ck~W~~~~~~----~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L  107 (594)
T 2p1m_B           34 CKSWYEIERW----CRRKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL  107 (594)
T ss_dssp             CHHHHHHHHH----HCCEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HHHHHHhhhh----hceEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence            5578887322    23345554432  2222 236677889999999875321   122            123467889


Q ss_pred             ceEEecCCCCCCccccccC-CCCCCcEEEcCCC-CCCCCcchhHhhccccccEEEeecccccccCCccC----CCCCCCc
Q 047196          149 KFLDFSDNQLSGSLSSVTF-NLSSVLDIRLDSD-KLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL----SKCKRLQ  222 (827)
Q Consensus       149 ~~LdLs~N~l~g~~p~~~~-~l~~L~~L~L~~n-~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~  222 (827)
                      ++|+|++|.+++..+..+. .+++|++|+|++| .++......+...+++|++|+|++|.+++..+..+    ..+++|+
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~  187 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV  187 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence            9999999988877666654 5778888888877 44432233344345688888888888776544333    3667888


Q ss_pred             EEEccCCC--Cccc-CCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecc-------cCcccCchhhhcCCC
Q 047196          223 LLNLGFKK--LSGA-IPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN-------NLVGVVPAAIFNMST  292 (827)
Q Consensus       223 ~L~L~~n~--l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-------~l~~~~p~~~~~l~~  292 (827)
                      .|++++|.  ++.. ++..+.++++|++|++++|...+.+|..+..+++|++|+++.+       .+.+ ++..+.++++
T Consensus       188 ~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~  266 (594)
T 2p1m_B          188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKE  266 (594)
T ss_dssp             EEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTT
T ss_pred             EEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCC
Confidence            88888876  2211 1112234678888888887332337777778888888885443       3443 3346677777


Q ss_pred             ccEEE-ecCCccccccChhhhcCCCCccEEeCcCCcccccc-CccccCCCCCcEEEcCCCcceeecCCCccCCCCCCccc
Q 047196          293 VKKIY-LLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTI-PSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGV  370 (827)
Q Consensus       293 L~~L~-l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~  370 (827)
                      |+.+. +.+.. .+.++.... .+++|+.|++++|.+++.. +..+..+++|+.|++++| ++..              .
T Consensus       267 L~~Ls~~~~~~-~~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~--------------~  329 (594)
T 2p1m_B          267 LRCLSGFWDAV-PAYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA--------------G  329 (594)
T ss_dssp             CCEEECCBTCC-GGGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH--------------H
T ss_pred             cccccCCcccc-hhhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH--------------H
Confidence            77773 22221 122332221 4567777777777765432 222456677777777665 2210              0


Q ss_pred             CCCchhcccccccEEEccC---------CcCccccCccc-cCCCCCceEeccCcccccccccccc-CCCCCcEEECC--C
Q 047196          371 LPTSIGNLSMSLENIYISN---------CNIGGSIPQLI-SNLSNLLLLDLEGNKLTGSIPVTFG-RLQKLQGLYLP--F  437 (827)
Q Consensus       371 ~p~~~~~~~~~L~~L~Ls~---------N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~Ls--~  437 (827)
                      ++.....++ +|++|++++         +.+++.....+ ..+++|+.|+++.|.+++..+..+. .+++|+.|+++  +
T Consensus       330 l~~l~~~~~-~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          330 LEVLASTCK-DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             HHHHHHHCT-TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             HHHHHHhCC-CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            001111122 566666632         34433222222 2356666666666666554444443 35666666665  2


Q ss_pred             ----CCCCCCC-----CccccccccccEEecCCCcccccCCccccC-CCCCCccccCCCcccccCCccccccccccccCC
Q 047196          438 ----NKLAGSI-----PDQLCHLARLNTLGLAGNKFSGSIPSCLGN-LTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDL  507 (827)
Q Consensus       438 ----N~l~g~~-----p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  507 (827)
                          |.+++..     +..+..+++|+.|++++ .+++..+..+.. +++|++|+|++|.                    
T Consensus       409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~--------------------  467 (594)
T 2p1m_B          409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG--------------------  467 (594)
T ss_dssp             TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC--------------------
T ss_pred             CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC--------------------
Confidence                3333111     11133344555555544 333333333322 4445555555444                    


Q ss_pred             CCCCCCCCCcccc-cccccCceEEcccceeeecccc-cccCCCCCCEEECCCCcc
Q 047196          508 SSNSLDGPLSLDI-GNLRVVIGINLSRNNFSGDIPS-TIGDLKDLQNISLACNGL  560 (827)
Q Consensus       508 s~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g~ip~-~~~~l~~L~~L~Ls~N~l  560 (827)
                          +++..+..+ ..+++|+.|++++|.+++..+. .+..+++|+.|++++|++
T Consensus       468 ----i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          468 ----DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             ----SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             ----CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence                443322222 3345555555555555433332 223355555555555555

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.93  E-value=5.7e-27  Score=251.86  Aligned_cols=149  Identities=26%  Similarity=0.399  Sum_probs=113.5

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--e
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++...  .....++|.+|++++++++|||||++++++.+++..++  +
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            6789999999999999999986 46999999999654  23456789999999999999999999999988775554  3


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ++..+          ...+++.+...|+.||+.||+|||   +++||||||||+|||          |||+|+.+.....
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~  180 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE  180 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcc
Confidence            33221          123456677889999999999996   578999999999998          9999987643222


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . .+..+||+.|||||++
T Consensus       181 ~-~~~~~GT~~YmAPE~l  197 (350)
T 4b9d_A          181 L-ARACIGTPYYLSPEIC  197 (350)
T ss_dssp             H-HHHHHSCCTTCCHHHH
T ss_pred             c-ccccCCCccccCHHHH
Confidence            1 2335699999999974

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.93  E-value=1.5e-26  Score=241.17  Aligned_cols=148  Identities=23%  Similarity=0.371  Sum_probs=107.5

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++....   ....+.+.+|++++++++|||||++++++.+++..++..
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            5799999999999999999986 469999999997542   223467999999999999999999999998877655432


Q ss_pred             eccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          751 LHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       751 l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .+.+         ...++..+...++.|++.||+|||   +++|+||||||+|||          |||+|+.......  
T Consensus        93 Ey~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~--  167 (275)
T 3hyh_A           93 EYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF--  167 (275)
T ss_dssp             ECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC----------
T ss_pred             eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCCc--
Confidence            2221         245777788899999999999996   578999999999998          9999987654332  


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||+.|||||++
T Consensus       168 ~~~~~GT~~Y~APE~~  183 (275)
T 3hyh_A          168 LKTSCGSPNYAAPEVI  183 (275)
T ss_dssp             -------CTTSCHHHH
T ss_pred             cCCeeECcccCChhhh
Confidence            2345799999999974

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=7e-27  Score=266.65  Aligned_cols=30  Identities=17%  Similarity=0.086  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          715 LKSFEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       715 ~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      .++|.+|++.+++++|+|+|+++|||....
T Consensus       323 ~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~  352 (487)
T 3oja_A          323 SETERLECERENQARQREIDALKEQYRTVI  352 (487)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHhcccccchhhHHHHhcChH
Confidence            356999999999999999999999997754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.7e-26  Score=263.41  Aligned_cols=124  Identities=20%  Similarity=0.115  Sum_probs=72.2

Q ss_pred             cccEEEccCCcCccccCcccc-CCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEec
Q 047196          381 SLENIYISNCNIGGSIPQLIS-NLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  459 (827)
                      +|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++ +|..+..+++|+.|+|
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L  221 (487)
T 3oja_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL  221 (487)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred             CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence            444445555555544444443 45666666666666665422  2246666666666666664 3334666666666666


Q ss_pred             CCCcccccCCccccCCCCCCccccCCCccc-ccCCccccccccccccCCC
Q 047196          460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLT-SVLPSTFWNLKDILFFDLS  508 (827)
Q Consensus       460 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs  508 (827)
                      ++|++++ +|..+..+++|+.|++++|.+. +.+|.++..++.|+.++++
T Consensus       222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            6666664 5656666666666666666665 4555556666666655553

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.93  E-value=2.1e-26  Score=244.30  Aligned_cols=150  Identities=26%  Similarity=0.424  Sum_probs=106.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--------  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--------  744 (827)
                      ++|+..+.||+|+||+||+|+.+ +|+.||||+++... ....+++.+|+++|++++|||||++++++.+.+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            56889999999999999999864 68999999996543 344578999999999999999999999986543        


Q ss_pred             ------ceeeeeeccCC-----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------e
Q 047196          745 ------FKALDCLHSTN-----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------D  797 (827)
Q Consensus       745 ------~~~l~~l~~~~-----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------D  797 (827)
                            +..++++..+.           ....+.....|+.|+++||+|||   +++||||||||+|||          |
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~D  161 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGD  161 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEcc
Confidence                  22333332211           11234446789999999999996   568999999999998          9


Q ss_pred             ecccccccCCCcc-----------ccccceecccccccccC
Q 047196          798 FGIGRLLTGDRSM-----------IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       798 FGla~~~~~~~~~-----------~~~~~~gt~~Y~APE~l  827 (827)
                      ||+|+.+..+...           ..+..+||+.|||||++
T Consensus       162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  202 (299)
T 4g31_A          162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI  202 (299)
T ss_dssp             CCCC--------------------------CCCTTSCHHHH
T ss_pred             CccceecCCCccccccccccccccccCCcccCccccCHHHH
Confidence            9999987543221           11234699999999974

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.92  E-value=7.2e-26  Score=242.19  Aligned_cols=145  Identities=23%  Similarity=0.256  Sum_probs=113.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l  751 (827)
                      +.|...++||+|+||+||+|+.+ +|+.||||+++....     ..+|++++++++|||||++++++.+++..++  +++
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  132 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL  132 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence            56777889999999999999864 699999999975422     2479999999999999999999988776544  443


Q ss_pred             ccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCcc--
Q 047196          752 HST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSM--  810 (827)
Q Consensus       752 ~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~--  810 (827)
                      ...        ...+++.+...++.|++.||+|||   +++||||||||+|||           |||+|+.+..+...  
T Consensus       133 ~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~  209 (336)
T 4g3f_A          133 EGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKS  209 (336)
T ss_dssp             TTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC--------
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccc
Confidence            321        235778888899999999999995   678999999999998           99999987543321  


Q ss_pred             --ccccceecccccccccC
Q 047196          811 --IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 --~~~~~~gt~~Y~APE~l  827 (827)
                        .....+||+.|||||++
T Consensus       210 ~~~~~~~~GT~~YmAPE~~  228 (336)
T 4g3f_A          210 LLTGDYIPGTETHMAPEVV  228 (336)
T ss_dssp             ----CCCCCCGGGCCHHHH
T ss_pred             eecCCccccCccccCHHHH
Confidence              11224699999999974

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1e-27  Score=281.70  Aligned_cols=418  Identities=13%  Similarity=0.114  Sum_probs=251.9

Q ss_pred             CEEECCCCCCCccCC-hhhhhccccceEEecCCCCCCcc---c------------cccCCCCCCcEEEcCCCCCCCCcch
Q 047196          125 TTLNLSHNKLSGDIP-PSIFTMHKLKFLDFSDNQLSGSL---S------------SVTFNLSSVLDIRLDSDKLSGELPV  188 (827)
Q Consensus       125 ~~L~Ls~N~l~g~~p-~~~~~l~~L~~LdLs~N~l~g~~---p------------~~~~~l~~L~~L~L~~n~l~g~ip~  188 (827)
                      +.+++++..  ...| ..+..+++|++|+|+++.....+   |            .....+++|++|+|++|.+++..+.
T Consensus        46 ~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~  123 (594)
T 2p1m_B           46 RKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE  123 (594)
T ss_dssp             CEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             eEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence            355665433  2333 34678999999999998643211   1            1123455666666666666655555


Q ss_pred             hHhhccccccEEEeecc-ccccc-CCccCCCCCCCcEEEccCCCCcccCCCcCc----CCccccEEEccccc--ccc-cc
Q 047196          189 NICNYLHYLKVLFLAKN-MFHGQ-IPLALSKCKRLQLLNLGFKKLSGAIPKEIS----NLTILRKISLRNNK--LRG-EI  259 (827)
Q Consensus       189 ~~~~~~~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~Ls~N~--l~~-~~  259 (827)
                      .+...+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+.    .+++|++|++++|.  ++. .+
T Consensus       124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (594)
T 2p1m_B          124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL  203 (594)
T ss_dssp             HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred             HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence            55433446666666666 33322 333333556666666666665543332222    44456666666554  211 11


Q ss_pred             cccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCC
Q 047196          260 PHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA  339 (827)
Q Consensus       260 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  339 (827)
                      +..+..+++|++|+|++|...+.+|..+.++++|+.|++..+..                  ++..|.+.+ ++..+.++
T Consensus       204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~------------------~~~~~~~~~-l~~~l~~~  264 (594)
T 2p1m_B          204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA------------------EVRPDVYSG-LSVALSGC  264 (594)
T ss_dssp             HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC------------------CCCHHHHHH-HHHHHHTC
T ss_pred             HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC------------------ccchhhHHH-HHHHHhcC
Confidence            11123345566666655522222444455555555554433221                  022333443 33456777


Q ss_pred             CCCcEE-EcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCcccc-CccccCCCCCceEeccCcccc
Q 047196          340 SKLVYL-DMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSI-PQLISNLSNLLLLDLEGNKLT  417 (827)
Q Consensus       340 ~~L~~L-~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~  417 (827)
                      ++|+.| .+.+...                +.+|..+..++ +|++|++++|.+++.. +..+..+++|+.|++++| +.
T Consensus       265 ~~L~~Ls~~~~~~~----------------~~l~~~~~~~~-~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~  326 (594)
T 2p1m_B          265 KELRCLSGFWDAVP----------------AYLPAVYSVCS-RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE  326 (594)
T ss_dssp             TTCCEEECCBTCCG----------------GGGGGGHHHHT-TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH
T ss_pred             CCcccccCCcccch----------------hhHHHHHHhhC-CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC
Confidence            777777 2222111                12233333344 7888888888876543 334567888889988888 43


Q ss_pred             c-cccccccCCCCCcEEECC---------CCCCCCCCCcccc-ccccccEEecCCCcccccCCcccc-CCCCCCccccC-
Q 047196          418 G-SIPVTFGRLQKLQGLYLP---------FNKLAGSIPDQLC-HLARLNTLGLAGNKFSGSIPSCLG-NLTSLRSPDLG-  484 (827)
Q Consensus       418 g-~~p~~~~~l~~L~~L~Ls---------~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls-  484 (827)
                      . .++.....+++|+.|+++         .+.+++.....+. .+++|+.|+++.|++++..+..+. .+++|+.|+++ 
T Consensus       327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~  406 (594)
T 2p1m_B          327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI  406 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeec
Confidence            2 233333457888888883         3455433222232 478899998888888876655554 58899999998 


Q ss_pred             -C----Cccccc-----CCccccccccccccCCCCCCCCCCCcccccc-cccCceEEcccceeeecccccc-cCCCCCCE
Q 047196          485 -S----NRLTSV-----LPSTFWNLKDILFFDLSSNSLDGPLSLDIGN-LRVVIGINLSRNNFSGDIPSTI-GDLKDLQN  552 (827)
Q Consensus       485 -~----N~l~~~-----~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~-l~~L~~L~Ls~N~l~g~ip~~~-~~l~~L~~  552 (827)
                       +    |.++..     ++..+..+++|+.|+|++ .+++..+..++. +++|+.|++++|.+++..+..+ ..+++|+.
T Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~  485 (594)
T 2p1m_B          407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK  485 (594)
T ss_dssp             SSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred             ccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence             4    556532     222366788999999987 777666666665 8899999999999988766666 67999999


Q ss_pred             EECCCCcceeecCC----CCcCCceEeCcCCcCe
Q 047196          553 ISLACNGLEGLIPE----SFGYLTELNLSFNKLE  582 (827)
Q Consensus       553 L~Ls~N~l~g~ip~----~~~~L~~L~ls~N~l~  582 (827)
                      |+|++|.+++..+.    .+.+|+.|++++|+++
T Consensus       486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            99999999654432    3568999999999885

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.92  E-value=4.1e-26  Score=241.12  Aligned_cols=149  Identities=25%  Similarity=0.287  Sum_probs=110.8

Q ss_pred             hcccccceEecCCceEEEEEEec----CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|+..+.||+|+||+||+|+..    +++.||||+++...  .....++.+|++++++++|||||++++++.+++..++
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            57999999999999999999752    47899999996532  1223468899999999999999999999988776554


Q ss_pred             eeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ...+..          ...++..+...++.|++.||+|||   +++|+||||||+|||          |||+|+......
T Consensus       104 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~  180 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE  180 (304)
T ss_dssp             EECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----
T ss_pred             EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCC
Confidence            333322          235677778889999999999996   578999999999998          999998764433


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .. ....+||+.|||||++
T Consensus       181 ~~-~~~~~GT~~YmAPE~~  198 (304)
T 3ubd_A          181 KK-AYSFCGTVEYMAPEVV  198 (304)
T ss_dssp             CC-CCSCCCCGGGCCHHHH
T ss_pred             cc-ccccccCcccCCHHHh
Confidence            22 2345699999999974

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.92  E-value=4.2e-25  Score=239.15  Aligned_cols=152  Identities=22%  Similarity=0.409  Sum_probs=119.1

Q ss_pred             HhhcccccceEecCCceEEEEEEecC------CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCC-CCceEEEeeeecCC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHD------GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRH-RNHVKRISSCSNED  744 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H-~niv~~~~~~~~~~  744 (827)
                      ..++|+..+.||+|+||+||+|++..      ++.||||++.... ....++|.+|+++|++++| ||||+++|+|.+++
T Consensus        62 ~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~  141 (353)
T 4ase_A           62 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG  141 (353)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred             cHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecC
Confidence            44678888999999999999998642      3689999997643 3445789999999999976 89999999997643


Q ss_pred             ---ceeeeeeccC------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          745 ---FKALDCLHST------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       745 ---~~~l~~l~~~------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                         +.+++++..+                        ...+++.++..++.|||+||+|||   +++||||||||+||| 
T Consensus       142 ~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NILl  218 (353)
T 4ase_A          142 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILL  218 (353)
T ss_dssp             SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCccceee
Confidence               2334443221                        123788889999999999999996   567999999999999 


Q ss_pred             ---------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 ---------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                               |||+|+.+..+.... .+..+||++|||||++
T Consensus       219 ~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l  259 (353)
T 4ase_A          219 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI  259 (353)
T ss_dssp             CGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH
T ss_pred             CCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHH
Confidence                     999999875544332 2345699999999974

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.9e-24  Score=228.01  Aligned_cols=206  Identities=22%  Similarity=0.262  Sum_probs=161.6

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      ++++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..|..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            67888888888887777777888888888888888887777778888888888888888887777778888888888888


Q ss_pred             CCcccccCCccccCCCCCCccccCCCccccc-CCccccccccccccCCCCCCCCCCCcccccccccCc----eEEcccce
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV-LPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVI----GINLSRNN  535 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~----~L~Ls~N~  535 (827)
                      +|++++..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+..|+    .|++++|+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            8888876666788888888888888888764 577888888888888888888877777777777766    78888888


Q ss_pred             eeecccccccCCCCCCEEECCCCcceeecCCCC---cCCceEeCcCCcCeecCCC
Q 047196          536 FSGDIPSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNLSFNKLEGEIPR  587 (827)
Q Consensus       536 l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~L~~L~ls~N~l~g~ip~  587 (827)
                      +++..+..+.. .+|+.|+|++|++++..+..+   .+|+.|++++|++++..|.
T Consensus       189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            88665555544 478888888888887766544   4788888888888876654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=5.6e-24  Score=224.43  Aligned_cols=184  Identities=26%  Similarity=0.272  Sum_probs=138.9

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+.+..+..+.++++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence            56666666666666566667777777777777777777766777777777777777777776666667777778888888


Q ss_pred             CCccccc-CCccccCCCCCCccccCCCcccccCCcccccccccc----ccCCCCCCCCCCCcccccccccCceEEcccce
Q 047196          461 GNKFSGS-IPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDIL----FFDLSSNSLDGPLSLDIGNLRVVIGINLSRNN  535 (827)
Q Consensus       461 ~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~  535 (827)
                      +|++++. +|..+..+++|++|++++|.+++..+..+..+.+|+    .|++++|.+++..+..+.. ..|+.|++++|+
T Consensus       133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~  211 (276)
T 2z62_A          133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQ  211 (276)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSC
T ss_pred             CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCc
Confidence            8877753 577777888888888888888777777777776666    7788888888655544443 478889999999


Q ss_pred             eeecccccccCCCCCCEEECCCCcceeecC
Q 047196          536 FSGDIPSTIGDLKDLQNISLACNGLEGLIP  565 (827)
Q Consensus       536 l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip  565 (827)
                      +++..+..+..+++|+.|++++|.+++..|
T Consensus       212 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          212 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             eeecCHhHhcccccccEEEccCCcccccCC
Confidence            887777778889999999999999987655

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.1e-24  Score=240.16  Aligned_cols=150  Identities=29%  Similarity=0.440  Sum_probs=117.3

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecC------C-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNE------D-  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~------~-  744 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++...  .....+++.+|+++|++++|||||++++++...      . 
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            5689999999999999999986 47999999999653  234456789999999999999999999987542      1 


Q ss_pred             -ceeeeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 -FKALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 -~~~l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                       +.+++++..       ....+++.+...++.|++.||+|||   +++||||||||+|||          |||+|+.+..
T Consensus       134 ~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~  210 (398)
T 4b99_A          134 VYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCT  210 (398)
T ss_dssp             EEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC--
T ss_pred             EEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeeeccc
Confidence             234444422       2346788888899999999999996   578999999999998          9999987643


Q ss_pred             CCc---cccccceecccccccccC
Q 047196          807 DRS---MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~---~~~~~~~gt~~Y~APE~l  827 (827)
                      ...   ...+..+||+.|||||++
T Consensus       211 ~~~~~~~~~~~~~GT~~Y~APEv~  234 (398)
T 4b99_A          211 SPAEHQYFMTEYVATRWYRAPELM  234 (398)
T ss_dssp             -----CCCCCSSCCCCTTCCHHHH
T ss_pred             CccccccccccceeChHhcCHHHh
Confidence            321   122345799999999973

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=3.6e-24  Score=225.27  Aligned_cols=200  Identities=27%  Similarity=0.274  Sum_probs=166.0

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|+.|++++|.++. + ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            57777777777663 2 2467788888888888888763  367788888888888888887777778888888888888


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..++.+++|+.|++++|++++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            88888777777888888888888888888877777888888889999999888877777888899999999999999888


Q ss_pred             cccccCCCCCCEEECCCCcceeecCCCCcCCceEeCcCCcCeecCCCC
Q 047196          541 PSTIGDLKDLQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIPRG  588 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~L~~L~ls~N~l~g~ip~~  588 (827)
                      |..++.+++|+.|++++|.+.+..|    .|+.++++.|+++|.+|..
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHTGGGBBCT
T ss_pred             HHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhCCCcccCc
Confidence            8888999999999999999888766    5788999999999999974

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=8e-24  Score=219.88  Aligned_cols=192  Identities=21%  Similarity=0.287  Sum_probs=138.9

Q ss_pred             CCCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccc
Q 047196           84 SVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLS  163 (827)
Q Consensus        84 ~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p  163 (827)
                      +||.|.|++|..   ..+.+++++++++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|.+++..+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            688999999963   3456899999998 4566555  689999999999999888899999999999999999998887


Q ss_pred             cccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCc
Q 047196          164 SVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLT  243 (827)
Q Consensus       164 ~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  243 (827)
                      ..+.++++|++|+|++|.+++ +|...+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|++++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            778888888888877777773 4444444445666666666666655555566666666666666666655555566666


Q ss_pred             cccEEEcccccccccccccccCcCCCcEEEeecccCccc
Q 047196          244 ILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV  282 (827)
Q Consensus       244 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  282 (827)
                      +|++|+|++|++++..+..+..+++|++|+|++|.+++.
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            666666666666655555566666666666666666544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=4.5e-24  Score=224.59  Aligned_cols=210  Identities=22%  Similarity=0.298  Sum_probs=136.4

Q ss_pred             ccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccc
Q 047196          118 LGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYL  197 (827)
Q Consensus       118 l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L  197 (827)
                      +..+++|+.|++++|.++. + +.+..+++|++|+|++|.+++.  ..+..+++|++|++++|.+++ +|...+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTC
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-cChhHhcCCcCC
Confidence            4455566666666666552 2 2355666666666666666542  245555555555555555553 333333334467


Q ss_pred             cEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecc
Q 047196          198 KVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFN  277 (827)
Q Consensus       198 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  277 (827)
                      ++|++++|.+++..+..++++++|++|++++|.+++..|..++++++|++|++++|++++..+..++.+++|++|+|++|
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            77777777776666666777777777777777777666666777777777777777777666666777777777777777


Q ss_pred             cCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCC
Q 047196          278 NLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNAS  340 (827)
Q Consensus       278 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  340 (827)
                      ++++..|..+.++++|+.|++++|.+.+        .+++|+.|+++.|+++|.+|.+++.+.
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            7777666666777777777777776654        244566677777777777777665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.9e-23  Score=217.20  Aligned_cols=181  Identities=23%  Similarity=0.259  Sum_probs=100.0

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      ++++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            45555566665555544555556666666666666654444445555666666666666655444455555556666666


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++..|..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|.+++..+..+..++.|+.|++++|++++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            66555554555555555555555555555544444555555555555555555544444555555555555555555444


Q ss_pred             cccccCCCCCCEEECCCCcce
Q 047196          541 PSTIGDLKDLQNISLACNGLE  561 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~  561 (827)
                      +..+..+++|+.|+|++|.+.
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCBC
T ss_pred             HHHhccccCCCEEEecCCCee
Confidence            444555555555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=226.35  Aligned_cols=200  Identities=18%  Similarity=0.189  Sum_probs=170.6

Q ss_pred             cccEEEccCCcCccccCccc--cCCCCCceEeccCcccccccc----ccccCCCCCcEEECCCCCCCCCCCccccccccc
Q 047196          381 SLENIYISNCNIGGSIPQLI--SNLSNLLLLDLEGNKLTGSIP----VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARL  454 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~Ls~N~l~g~~p----~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L  454 (827)
                      +|++|++++|++++..|..+  ..+++|++|+|++|++++..+    ..+..+++|++|+|++|++.+..|..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            58999999999999888888  889999999999999998655    345678999999999999998888999999999


Q ss_pred             cEEecCCCccccc--C--CccccCCCCCCccccCCCcccccCC--c-cccccccccccCCCCCCCCCCCccccccc---c
Q 047196          455 NTLGLAGNKFSGS--I--PSCLGNLTSLRSPDLGSNRLTSVLP--S-TFWNLKDILFFDLSSNSLDGPLSLDIGNL---R  524 (827)
Q Consensus       455 ~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p--~-~~~~l~~L~~LdLs~N~l~g~~p~~~~~l---~  524 (827)
                      ++|+|++|++.+.  +  +..+..+++|++|+|++|+++...+  . .+..+++|++|||++|++++.+|..++.+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            9999999998753  2  3345788999999999999974222  1 25678999999999999999888888777   6


Q ss_pred             cCceEEcccceeeecccccccCCCCCCEEECCCCccee-ecCCCCcCCceEeCcCCcCee
Q 047196          525 VVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEG-LIPESFGYLTELNLSFNKLEG  583 (827)
Q Consensus       525 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g-~ip~~~~~L~~L~ls~N~l~g  583 (827)
                      .|+.|+|++|+|+ .+|..+.  ++|+.|||++|++++ .++..+.+|+.|++++|+++.
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred             cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence            9999999999999 7788775  799999999999998 567778899999999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=7.1e-23  Score=217.25  Aligned_cols=203  Identities=19%  Similarity=0.160  Sum_probs=147.9

Q ss_pred             ccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcc
Q 047196          336 ITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNK  415 (827)
Q Consensus       336 ~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  415 (827)
                      +.++++++.+++++|.++..                |..+.   .+++.|++++|++++..|..|..+++|+.|+|++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i----------------p~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~   66 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL----------------PPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE   66 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC----------------CSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC
T ss_pred             ccccCCccEEECCCCCCCcC----------------CCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc
Confidence            44556666666666665522                11111   267778888888877777778888888888888888


Q ss_pred             ccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCcc
Q 047196          416 LTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPST  495 (827)
Q Consensus       416 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  495 (827)
                      +++..+.  +.+++|++|+|++|+++ .+|..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..
T Consensus        67 l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  143 (290)
T 1p9a_G           67 LTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL  143 (290)
T ss_dssp             CCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             cCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence            8765432  67788888888888887 66777777888888888888887666677778888888888888888777777


Q ss_pred             ccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcce
Q 047196          496 FWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLE  561 (827)
Q Consensus       496 ~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  561 (827)
                      |..+++|+.|+|++|++++..+..+..++.|+.|+|++|+|+ .+|..+..+.+|+.|+|++|.+.
T Consensus       144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            777778888888888887655556677777777777777777 66777777777777777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=6e-25  Score=241.38  Aligned_cols=254  Identities=18%  Similarity=0.153  Sum_probs=193.6

Q ss_pred             EEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCC----hhhhhcc-ccceEEecCCCCCCccccccCCC-----CC
Q 047196          102 ALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIP----PSIFTMH-KLKFLDFSDNQLSGSLSSVTFNL-----SS  171 (827)
Q Consensus       102 ~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p----~~~~~l~-~L~~LdLs~N~l~g~~p~~~~~l-----~~  171 (827)
                      ..+|+.++++|.+|..+...++|++|||++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            36788999999988888888889999999999987766    6778888 89999999999998777666654     89


Q ss_pred             CcEEEcCCCCCCCCcchhHhhcc----ccccEEEeecccccccCCccC----CC-CCCCcEEEccCCCCccc----CCCc
Q 047196          172 VLDIRLDSDKLSGELPVNICNYL----HYLKVLFLAKNMFHGQIPLAL----SK-CKRLQLLNLGFKKLSGA----IPKE  238 (827)
Q Consensus       172 L~~L~L~~n~l~g~ip~~~~~~~----~~L~~L~Ls~N~l~~~~p~~l----~~-l~~L~~L~L~~n~l~~~----~p~~  238 (827)
                      |++|+|++|.+++..+..+...+    ++|++|+|++|.+++..+..+    .. .++|++|+|++|.++..    ++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999999877777655532    589999999999987665443    34 36899999999998853    3334


Q ss_pred             CcCCc-cccEEEcccccccccccccccC----c-CCCcEEEeecccCccc----Cchhhhc-CCCccEEEecCCcccccc
Q 047196          239 ISNLT-ILRKISLRNNKLRGEIPHEIGY----L-PNLENLVLGFNNLVGV----VPAAIFN-MSTVKKIYLLDNSLLGSF  307 (827)
Q Consensus       239 ~~~l~-~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~l~~n~l~~~~  307 (827)
                      +..++ +|++|+|++|++++..+..+..    . ++|++|||++|.+++.    ++..+.. .++|++|++++|.+.+..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            45555 8999999999998777655543    4 5899999999998873    4455555 358999999998887643


Q ss_pred             Ch---hhhcCCCCccEEeCcCCccccc-------cCccccCCCCCcEEEcCCCcceee
Q 047196          308 SL---GIDLSLPNVERLNLGLNRFSGT-------IPSFITNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       308 ~~---~~~~~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~Ls~N~l~g~  355 (827)
                      +.   .....+++|+.|+|++|++.+.       ++..+..+++|+.||+++|.+.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            32   2223677888999988884432       334567788888888888887654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=2.3e-23  Score=214.66  Aligned_cols=196  Identities=18%  Similarity=0.165  Sum_probs=174.3

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCcc-ccccccccccCCCCCcEEECCC-CCCCCCCCccccccccccEEe
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNK-LTGSIPVTFGRLQKLQGLYLPF-NKLAGSIPDQLCHLARLNTLG  458 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~  458 (827)
                      ++++|++++|++++..+..|.++++|+.|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            79999999999998888889999999999999997 8877777899999999999998 999977778899999999999


Q ss_pred             cCCCcccccCCccccCCCCCC---ccccCCC-cccccCCcccccccccc-ccCCCCCCCCCCCcccccccccCceEEccc
Q 047196          459 LAGNKFSGSIPSCLGNLTSLR---SPDLGSN-RLTSVLPSTFWNLKDIL-FFDLSSNSLDGPLSLDIGNLRVVIGINLSR  533 (827)
Q Consensus       459 Ls~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~  533 (827)
                      +++|++++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ .|++++|+++ .+|......+.|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence            99999986 776 88888888   9999999 99988888899999999 9999999998 5555444448899999999


Q ss_pred             ce-eeecccccccCC-CCCCEEECCCCcceeecCCCCcCCceEeCcCC
Q 047196          534 NN-FSGDIPSTIGDL-KDLQNISLACNGLEGLIPESFGYLTELNLSFN  579 (827)
Q Consensus       534 N~-l~g~ip~~~~~l-~~L~~L~Ls~N~l~g~ip~~~~~L~~L~ls~N  579 (827)
                      |+ +++..+..|..+ ++|+.|++++|++++..+..|.+|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence            95 997778889999 99999999999999877777899999999876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=4.9e-25  Score=242.09  Aligned_cols=233  Identities=18%  Similarity=0.176  Sum_probs=108.3

Q ss_pred             EEeecccccccCCccCCCCCCCcEEEccCCCCcccCC----CcCcCCc-cccEEEcccccccccccccccCc-----CCC
Q 047196          200 LFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIP----KEISNLT-ILRKISLRNNKLRGEIPHEIGYL-----PNL  269 (827)
Q Consensus       200 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L  269 (827)
                      ++++.|.++|.+|..+...++|++|+|++|.+++..+    ..+.+++ +|++|+|++|++++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4555555555555555555555555555555554443    3444454 55555555555554444444443     555


Q ss_pred             cEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCC-CCccEEeCcCCccccccCcccc----C-CCCCc
Q 047196          270 ENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSL-PNVERLNLGLNRFSGTIPSFIT----N-ASKLV  343 (827)
Q Consensus       270 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~  343 (827)
                      ++|+|++|.+++..+..+...                    +. .. ++|++|+|++|++++..+..+.    . .++|+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~--------------------l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKT--------------------LA-AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHH--------------------HH-TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             cEEECcCCcCChHHHHHHHHH--------------------HH-hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            555555555554444333221                    00 22 4555555555555544333222    2 23555


Q ss_pred             EEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccc----cCC-CCCceEeccCccccc
Q 047196          344 YLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLI----SNL-SNLLLLDLEGNKLTG  418 (827)
Q Consensus       344 ~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~----~~l-~~L~~L~Ls~N~l~g  418 (827)
                      +|++++|.+++..+.           .++..+.....+|++|+|++|++++..+..+    ..+ ++|+.|||++|++++
T Consensus       142 ~L~Ls~N~l~~~~~~-----------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          142 SLNLRGNDLGIKSSD-----------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             EEECTTSCGGGSCHH-----------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             EEEccCCcCCHHHHH-----------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            555555555421110           0111112222245555555555554444322    223 356666666666554


Q ss_pred             c----ccccccC-CCCCcEEECCCCCCCCCCC----ccccccccccEEecCCCcc
Q 047196          419 S----IPVTFGR-LQKLQGLYLPFNKLAGSIP----DQLCHLARLNTLGLAGNKF  464 (827)
Q Consensus       419 ~----~p~~~~~-l~~L~~L~Ls~N~l~g~~p----~~~~~l~~L~~L~Ls~N~l  464 (827)
                      .    ++..+.. .++|+.|+|++|.+++..+    ..+..+++|+.|++++|.+
T Consensus       211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence            2    2333333 2355555555555554332    1223344455555555553

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.89  E-value=1.2e-23  Score=229.21  Aligned_cols=150  Identities=23%  Similarity=0.307  Sum_probs=115.7

Q ss_pred             HhhcccccceEecCCceEEEEEEec----CCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCcee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~  747 (827)
                      ..+.|+..+.||+|+||+||+|+.+    +++.||||++....  ...++.+|+++++++ +|||||++++++.+.+..+
T Consensus        19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~   96 (361)
T 4f9c_A           19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV   96 (361)
T ss_dssp             GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred             ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence            3467999999999999999999753    46889999986543  234678999999998 6999999999998877655


Q ss_pred             eeeeccCC-------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCc
Q 047196          748 LDCLHSTN-------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRS  809 (827)
Q Consensus       748 l~~l~~~~-------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~  809 (827)
                      +...+...       ..++..+...++.|++.||+|||   +.+|+||||||+|||           |||+|+.......
T Consensus        97 lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~  173 (361)
T 4f9c_A           97 IAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKI  173 (361)
T ss_dssp             EEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSC
T ss_pred             EEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccc
Confidence            53333222       34677778889999999999996   678999999999998           9999986543211


Q ss_pred             c---------------------------ccccceecccccccccC
Q 047196          810 M---------------------------IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~---------------------------~~~~~~gt~~Y~APE~l  827 (827)
                      .                           ..+..+||++|||||++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  218 (361)
T 4f9c_A          174 ELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVL  218 (361)
T ss_dssp             GGGGGC--------------------------CCCCGGGCCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccCccccCHHHH
Confidence            0                           11234699999999974

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=4.4e-25  Score=239.86  Aligned_cols=269  Identities=17%  Similarity=0.208  Sum_probs=151.3

Q ss_pred             CCCcccceecCCCCCcEEEEEcCCCCCccccCccccCC--CCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCc
Q 047196           84 SVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNL--SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGS  161 (827)
Q Consensus        84 ~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~  161 (827)
                      -|..|.++.|+.  ..++.+|++++.+.   +..+..+  +++++|++++|.+.+..|. +..+++|++|+|++|.+++.
T Consensus        35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~  108 (336)
T 2ast_B           35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS  108 (336)
T ss_dssp             SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred             HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence            356899999874  35778888888776   3456666  7888888888888766554 55788888888888887755


Q ss_pred             -cccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecc-ccccc-CCccCCCCCCCcEEEccCC-CCcccCCC
Q 047196          162 -LSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKN-MFHGQ-IPLALSKCKRLQLLNLGFK-KLSGAIPK  237 (827)
Q Consensus       162 -~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~  237 (827)
                       +|..+..+++|++|++++|.+++..|..+.. +++|++|++++| .+++. ++..+.++++|++|++++| .+++.   
T Consensus       109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---  184 (336)
T 2ast_B          109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---  184 (336)
T ss_dssp             HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---
T ss_pred             HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH---
Confidence             6666666666666666666555444444443 335555555555 34431 3333444444444444444 44432   


Q ss_pred             cCcCCccccEEEcccccccccccccccCcC-CCcEEEeecc--cCc-ccCchhhhcCCCccEEEecCCc-cccccChhhh
Q 047196          238 EISNLTILRKISLRNNKLRGEIPHEIGYLP-NLENLVLGFN--NLV-GVVPAAIFNMSTVKKIYLLDNS-LLGSFSLGID  312 (827)
Q Consensus       238 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  312 (827)
                                          .++..+..++ +|++|+|++|  .++ +.+|..+.++++|+.|++++|. +++..+..+.
T Consensus       185 --------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          185 --------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             --------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             --------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence                                1344444444 5555555554  233 3334444445555555555554 3333333332


Q ss_pred             cCCCCccEEeCcCCc-cccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCc
Q 047196          313 LSLPNVERLNLGLNR-FSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCN  391 (827)
Q Consensus       313 ~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~  391 (827)
                       .+++|+.|++++|. +.......+.++++|+.|++++| ++    .              ..+..+...+..|++++|+
T Consensus       245 -~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~----~--------------~~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          245 -QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP----D--------------GTLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             -GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC----T--------------TCHHHHHHHSTTSEESCCC
T ss_pred             -CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC----H--------------HHHHHHHhhCcceEEeccc
Confidence             44556666666553 22111124556667777777666 21    1              1222222246666677777


Q ss_pred             CccccCccccC
Q 047196          392 IGGSIPQLISN  402 (827)
Q Consensus       392 l~g~~p~~~~~  402 (827)
                      +++..|..+++
T Consensus       305 l~~~~~~~~~~  315 (336)
T 2ast_B          305 FTTIARPTIGN  315 (336)
T ss_dssp             SCCTTCSSCSS
T ss_pred             CccccCCcccc
Confidence            77777777666

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=5.2e-23  Score=220.84  Aligned_cols=224  Identities=17%  Similarity=0.178  Sum_probs=167.3

Q ss_pred             CCCCEEECCCCCCCccCCh---hhhhccccceEEecCCCCCCcccccc--CCCCCCcEEEcCCCCCCCCcc----hhHhh
Q 047196          122 SSLTTLNLSHNKLSGDIPP---SIFTMHKLKFLDFSDNQLSGSLSSVT--FNLSSVLDIRLDSDKLSGELP----VNICN  192 (827)
Q Consensus       122 ~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~LdLs~N~l~g~~p~~~--~~l~~L~~L~L~~n~l~g~ip----~~~~~  192 (827)
                      ..++.|++.++.++...-.   .+..+++|++|+|++|.+++..|..+  ..+++|++|+|++|.+++..|    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            3578899998887632111   23346789999999999999999888  899999999999999998665    2223 


Q ss_pred             ccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCccc--C--CCcCcCCccccEEEcccccccccccc----ccc
Q 047196          193 YLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGA--I--PKEISNLTILRKISLRNNKLRGEIPH----EIG  264 (827)
Q Consensus       193 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~  264 (827)
                      .+++|++|+|++|.+++..|..++++++|++|+|++|++.+.  +  +..++++++|++|+|++|+++ .+|.    .++
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            466899999999999888888999999999999999998752  2  233578889999999999986 3333    256


Q ss_pred             CcCCCcEEEeecccCcccCchhhhcC---CCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCC
Q 047196          265 YLPNLENLVLGFNNLVGVVPAAIFNM---STVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASK  341 (827)
Q Consensus       265 ~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  341 (827)
                      .+++|++|+|++|++++..|..+..+   ++|++|++++|.+. .+|..+.   ++|++|+|++|++++. |. +..+++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~  295 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPE  295 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence            78899999999999998878777665   47777777777766 4554432   5677777777777653 22 455666


Q ss_pred             CcEEEcCCCcce
Q 047196          342 LVYLDMGTNSFS  353 (827)
Q Consensus       342 L~~L~Ls~N~l~  353 (827)
                      |+.|++++|.++
T Consensus       296 L~~L~L~~N~l~  307 (310)
T 4glp_A          296 VDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECSSTTTS
T ss_pred             ccEEECcCCCCC
Confidence            666666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2e-22  Score=213.80  Aligned_cols=152  Identities=26%  Similarity=0.340  Sum_probs=76.5

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      .++.+++++++++. +|..+.  +++++|+|++|.+++..|..|..+++|++|+|++|.+++..+.  ..++        
T Consensus        11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~--------   77 (290)
T 1p9a_G           11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP--------   77 (290)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT--------
T ss_pred             CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC--------
Confidence            45555555555552 333332  4555566666665555555555555666666665555532211  2333        


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE  258 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (827)
                                       +|++|++++|.++ .+|..+.++++|++|++++|++++..|..|.++++|++|+|++|++++.
T Consensus        78 -----------------~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  139 (290)
T 1p9a_G           78 -----------------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL  139 (290)
T ss_dssp             -----------------TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             -----------------cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence                             4444444444444 3444445555555555555555544444455555555555555555544


Q ss_pred             ccccccCcCCCcEEEeecccCcc
Q 047196          259 IPHEIGYLPNLENLVLGFNNLVG  281 (827)
Q Consensus       259 ~p~~~~~l~~L~~L~Ls~N~l~~  281 (827)
                      .+..|..+++|++|+|++|++++
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ChhhcccccCCCEEECCCCcCCc
Confidence            44444455555555555555543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.89  E-value=2.8e-23  Score=240.29  Aligned_cols=148  Identities=22%  Similarity=0.321  Sum_probs=121.9

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      ++|+..+.||+|+||+||+|+.+ +|+.||||++........+.+.+|+++|++++|||||++++++.+....++...+.
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence            57899999999999999999864 69999999997766556678999999999999999999999998877655533322


Q ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCcc
Q 047196          754 T-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRSM  810 (827)
Q Consensus       754 ~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~~  810 (827)
                      .           ...+++.+...++.||++||+|||   +++|+||||||+|||            |||+|+.+......
T Consensus       237 ~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~  313 (573)
T 3uto_A          237 SGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV  313 (573)
T ss_dssp             CCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEE
T ss_pred             CCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCce
Confidence            1           234567778889999999999996   568999999999998            99999987544332


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ...+||+.|||||++
T Consensus       314 --~~~~GT~~y~APEv~  328 (573)
T 3uto_A          314 --KVTTGTAEFAAPEVA  328 (573)
T ss_dssp             --EEECSSGGGCCHHHH
T ss_pred             --eeeEECccccCHHHh
Confidence              335699999999974

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.88  E-value=8.4e-23  Score=234.64  Aligned_cols=147  Identities=23%  Similarity=0.261  Sum_probs=114.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch------HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA------MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|+..++||+|+||+||+|+.+ +|+.||||++.+...      ....+..+|+++++.++|||||++++++.+++..+
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            57999999999999999999865 699999999964321      11122334567777889999999999998887665


Q ss_pred             eeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          748 LDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       748 l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +...+..+          +.++......++.+|+.||+|||   +++||||||||+|||          |||+|+.+...
T Consensus       269 lVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~  345 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  345 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeecCCC
Confidence            53333222          34667777889999999999995   678999999999999          99999877544


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..   .+.+||+.|||||++
T Consensus       346 ~~---~t~~GTp~YmAPEvl  362 (689)
T 3v5w_A          346 KP---HASVGTHGYMAPEVL  362 (689)
T ss_dssp             CC---CSCCSCGGGCCHHHH
T ss_pred             CC---CCccCCcCccCHHHH
Confidence            32   345799999999974

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=5.5e-22  Score=205.98  Aligned_cols=181  Identities=26%  Similarity=0.295  Sum_probs=147.9

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +.++++++++.++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            5677888888887 4555544  578888888888888888888888888888888888888777778888888888888


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++..+..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..++.+++|+.|+|++|+|++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            88888777777888888888888888888777777788888888888888888777767888888888888888888777


Q ss_pred             cccccCCCCCCEEECCCCcceeec
Q 047196          541 PSTIGDLKDLQNISLACNGLEGLI  564 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g~i  564 (827)
                      |..+..+++|+.|+|++|.+++..
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             HHHHhCCCCCCEEEeeCCceeCCc
Confidence            777888888888888888887653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3e-22  Score=206.33  Aligned_cols=196  Identities=18%  Similarity=0.127  Sum_probs=143.2

Q ss_pred             CCCEEECCCCCCCccCChhhhhccccceEEecCCC-CCCccccccCCCCCCcEEEcCC-CCCCCCcchhHhhccccccEE
Q 047196          123 SLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQ-LSGSLSSVTFNLSSVLDIRLDS-DKLSGELPVNICNYLHYLKVL  200 (827)
Q Consensus       123 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~-l~g~~p~~~~~l~~L~~L~L~~-n~l~g~ip~~~~~~~~~L~~L  200 (827)
                      +|++|+|++|++++..+..|.++++|++|++++|. +++..+..+.++++|++|++++ |.++ .+|...+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            67777777777776666677777777777777776 6655555677777777777777 7776 4555544445678888


Q ss_pred             EeecccccccCCccCCCCCCCc---EEEccCC-CCcccCCCcCcCCcccc-EEEcccccccccccccccCcCCCcEEEee
Q 047196          201 FLAKNMFHGQIPLALSKCKRLQ---LLNLGFK-KLSGAIPKEISNLTILR-KISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       201 ~Ls~N~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      ++++|.+++ +|. ++.+++|+   +|++++| .+++..+..|.++++|+ +|++++|+++ .+|......++|++|+|+
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            888888876 555 77777777   8888888 88777677788888888 8888888887 555544344788888888


Q ss_pred             ccc-CcccCchhhhcC-CCccEEEecCCccccccChhhhcCCCCccEEeCcCC
Q 047196          276 FNN-LVGVVPAAIFNM-STVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLN  326 (827)
Q Consensus       276 ~N~-l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N  326 (827)
                      +|+ +++..+..+.++ ++|+.|++++|.+.+ +|..   .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence            884 877767777777 888888888888764 4433   4678888888765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.3e-23  Score=232.87  Aligned_cols=138  Identities=21%  Similarity=0.308  Sum_probs=81.1

Q ss_pred             CCCcEEEccCCCCc-ccCC---CcCcCCccccEEEccccccc--c---cccccccCcCCCcEEEeecccCc----ccCch
Q 047196          219 KRLQLLNLGFKKLS-GAIP---KEISNLTILRKISLRNNKLR--G---EIPHEIGYLPNLENLVLGFNNLV----GVVPA  285 (827)
Q Consensus       219 ~~L~~L~L~~n~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~  285 (827)
                      ++|++|++++|.++ +.+|   ..+..+++|++|++++|+++  |   ..|..+..+++|++|+|++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            55666666666654 2333   24445556666666666655  2   23335556666666666666664    44555


Q ss_pred             hhhcCCCccEEEecCCccccc----cChhhh-cCCCCccEEeCcCCcccc----ccCccc-cCCCCCcEEEcCCCcceee
Q 047196          286 AIFNMSTVKKIYLLDNSLLGS----FSLGID-LSLPNVERLNLGLNRFSG----TIPSFI-TNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       286 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~-~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~g~  355 (827)
                      .+..+++|+.|++++|.+.+.    ++..+. ..+++|+.|+|++|++++    .+|..+ .++++|++|++++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            566666666666666665543    222221 136677777777777776    366665 5577777777777777654


Q ss_pred             c
Q 047196          356 I  356 (827)
Q Consensus       356 ~  356 (827)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=5.7e-23  Score=223.18  Aligned_cols=255  Identities=19%  Similarity=0.251  Sum_probs=200.5

Q ss_pred             CCCEEECCCCCCCccCChhhhhc--cccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEE
Q 047196          123 SLTTLNLSHNKLSGDIPPSIFTM--HKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVL  200 (827)
Q Consensus       123 ~L~~L~Ls~N~l~g~~p~~~~~l--~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L  200 (827)
                      .++.||+++|.+.   |..+..+  +++++|++++|.+.+..+. +..+                         ++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~-------------------------~~L~~L   98 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSP-------------------------FRVQHM   98 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCC-------------------------BCCCEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccC-------------------------CCCCEE
Confidence            4789999999886   5677777  8999999999998876543 2222                         367777


Q ss_pred             Eeeccccccc-CCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccc-ccccc-ccccccCcCCCcEEEeecc
Q 047196          201 FLAKNMFHGQ-IPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNN-KLRGE-IPHEIGYLPNLENLVLGFN  277 (827)
Q Consensus       201 ~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N  277 (827)
                      ++++|.+++. +|..+..+++|++|++++|.+++..|..++.+++|++|++++| .+++. +|..+..+++|++|++++|
T Consensus        99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B           99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            7777776655 6777788889999999999888888888888999999999999 67763 7777899999999999999


Q ss_pred             -cCccc-CchhhhcCC-CccEEEecCC--ccc-cccChhhhcCCCCccEEeCcCCc-cccccCccccCCCCCcEEEcCCC
Q 047196          278 -NLVGV-VPAAIFNMS-TVKKIYLLDN--SLL-GSFSLGIDLSLPNVERLNLGLNR-FSGTIPSFITNASKLVYLDMGTN  350 (827)
Q Consensus       278 -~l~~~-~p~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N  350 (827)
                       .+++. ++..+..++ +|++|++++|  .++ +.++..+. .+++|+.|++++|. +++..+..+..+++|+.|++++|
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence             99875 678889999 9999999999  455 44554443 78999999999999 78788889999999999999999


Q ss_pred             cceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCC-CCCceEeccCccccccccccccC
Q 047196          351 SFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNL-SNLLLLDLEGNKLTGSIPVTFGR  426 (827)
Q Consensus       351 ~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l-~~L~~L~Ls~N~l~g~~p~~~~~  426 (827)
                      .  +..+..+            ..+..++ +|++|++++| ++.   ..+..+ .++..|++++|++++..|..++.
T Consensus       258 ~--~~~~~~~------------~~l~~~~-~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 Y--DIIPETL------------LELGEIP-TLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             T--TCCGGGG------------GGGGGCT-TCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             C--CCCHHHH------------HHHhcCC-CCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            6  2211110            1344454 8999999999 432   234444 34788889999999999988765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.5e-23  Score=232.55  Aligned_cols=110  Identities=20%  Similarity=0.265  Sum_probs=51.0

Q ss_pred             ccccEEEccccccc-cccc---ccccCcCCCcEEEeecccCc--c---cCchhhhcCCCccEEEecCCccc----cccCh
Q 047196          243 TILRKISLRNNKLR-GEIP---HEIGYLPNLENLVLGFNNLV--G---VVPAAIFNMSTVKKIYLLDNSLL----GSFSL  309 (827)
Q Consensus       243 ~~L~~L~Ls~N~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~l~~n~l~----~~~~~  309 (827)
                      ++|++|+|++|+++ +.+|   ..+..+++|++|+|++|+++  |   ..|..+..+++|+.|++++|.+.    +.++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45555555555554 2233   23444455555555555554  1   22324445555555555555543    33333


Q ss_pred             hhhcCCCCccEEeCcCCccccc----cCccc--cCCCCCcEEEcCCCcce
Q 047196          310 GIDLSLPNVERLNLGLNRFSGT----IPSFI--TNASKLVYLDMGTNSFS  353 (827)
Q Consensus       310 ~~~~~l~~L~~L~L~~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~  353 (827)
                      .+. .+++|+.|+|++|++++.    +|..+  +.+++|+.|++++|.++
T Consensus       239 ~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          239 ALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             HGG-GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHc-cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            332 445555555555555443    33333  22455555555555544

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.87  E-value=1.6e-22  Score=218.73  Aligned_cols=167  Identities=33%  Similarity=0.542  Sum_probs=134.2

Q ss_pred             cccccchhHHHHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEee
Q 047196          661 TLRRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISS  739 (827)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~  739 (827)
                      ..+.+++.++...+++|...+.||+|+||.||+|+.++|+.||||++...... ....+.+|++++++++|||||+++++
T Consensus        16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~   95 (326)
T 3uim_A           16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF   95 (326)
T ss_dssp             CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred             ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence            34678889999999999999999999999999999888999999998654322 23368999999999999999999999


Q ss_pred             eecCCceee--eeecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          740 CSNEDFKAL--DCLHS------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       740 ~~~~~~~~l--~~l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                      +......++  +++..            ....+++..+..|+.++++||+|||..+.++|+||||||+||+         
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl  175 (326)
T 3uim_A           96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV  175 (326)
T ss_dssp             ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred             EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence            987665443  32221            1123788889999999999999999877789999999999998         


Q ss_pred             -eecccccccCCCccccccceecccccccccC
Q 047196          797 -DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                       |||+++..............||++|+|||++
T Consensus       176 ~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (326)
T 3uim_A          176 GDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYL  207 (326)
T ss_dssp             CCCSSCEECCSSSSCEECCCCSCGGGCCHHHH
T ss_pred             ccCccccccCcccccccccccCCcCccCHHHh
Confidence             9999987754443333334589999999963

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=4.4e-22  Score=228.93  Aligned_cols=200  Identities=22%  Similarity=0.333  Sum_probs=138.6

Q ss_pred             CCCCCCCCCC-----cccce-ecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccce
Q 047196           77 QNSTSNTSVC-----NWIGI-TCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKF  150 (827)
Q Consensus        77 ~w~~~~~~~C-----~W~gv-~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  150 (827)
                      +|. .+.++|     .|.|+ .|..  ++|+.|+|++|++++ +|..+.  ++|++|+|++|+|+ .+|   ..+++|++
T Consensus        35 ~W~-~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~  104 (571)
T 3cvr_A           35 KWE-KQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEY  104 (571)
T ss_dssp             HHH-TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred             HHh-ccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCE
Confidence            454 344567     79999 7863  479999999999998 777663  89999999999999 677   45799999


Q ss_pred             EEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCC
Q 047196          151 LDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKK  230 (827)
Q Consensus       151 LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~  230 (827)
                      |+|++|+|++ +|. +.+  +|++|+|++|.+++ +|.    .+++|++|+|++|.+++ +|.   .+++|++|+|++|.
T Consensus       105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence            9999999998 666 544  78888888888876 665    34577777777777775 454   46677777777777


Q ss_pred             CcccCCCcCcCCccccEEEcccccccccccccccCcCCC-------cEEEeecccCcccCchhhhcCCCccEEEecCCcc
Q 047196          231 LSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNL-------ENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSL  303 (827)
Q Consensus       231 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l  303 (827)
                      +++ +|. +.  ++|++|+|++|+|+ .+|. +..  +|       ++|+|++|+|+. +|..++.+++|+.|++++|.+
T Consensus       172 L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          172 LTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSC
T ss_pred             CCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcC
Confidence            776 555 54  67777777777776 5555 443  55       666666666663 455444444444444444444


Q ss_pred             ccccC
Q 047196          304 LGSFS  308 (827)
Q Consensus       304 ~~~~~  308 (827)
                      ++.+|
T Consensus       243 ~~~~p  247 (571)
T 3cvr_A          243 SSRIR  247 (571)
T ss_dssp             CHHHH
T ss_pred             CCcCH
Confidence            44433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.3e-21  Score=209.49  Aligned_cols=168  Identities=23%  Similarity=0.371  Sum_probs=91.4

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|++|++++|++++..+  +..+++|++|++++|++++. + .+..+++|+.|++++|++++. |. +..+++|+.|+++
T Consensus        64 ~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~  137 (308)
T 1h6u_A           64 NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLD  137 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECC
T ss_pred             CCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECC
Confidence            44445555554443322  45555555555555555542 2 355555555555555555542 22 5555555555555


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..++.|+.|++++|++++..
T Consensus       138 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             CCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence            555553322  5555556666666665554333  5555566666666666654433  555666666666666666443


Q ss_pred             cccccCCCCCCEEECCCCccee
Q 047196          541 PSTIGDLKDLQNISLACNGLEG  562 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g  562 (827)
                      |  +..+++|+.|++++|.+++
T Consensus       212 ~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          212 P--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GTTCTTCCEEEEEEEEEEC
T ss_pred             c--ccCCCCCCEEEccCCeeec
Confidence            2  5666666666666666654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.85  E-value=7.9e-22  Score=220.78  Aligned_cols=157  Identities=21%  Similarity=0.258  Sum_probs=124.0

Q ss_pred             hHHHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchH---HHHHHHHHHHHHHhcCCCCceEEEeeeecC
Q 047196          668 QDLFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAM---ALKSFEAECEVMKNIRHRNHVKRISSCSNE  743 (827)
Q Consensus       668 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~---~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~  743 (827)
                      .++...+++|+..++||+|+||+||+|+.+ +++.||||++......   ..+.+.+|+.+++.++|||||++++++.+.
T Consensus        67 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~  146 (437)
T 4aw2_A           67 KQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDD  146 (437)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred             hcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC
Confidence            344445678999999999999999999976 5889999999653221   223488999999999999999999999887


Q ss_pred             CceeeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          744 DFKALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       744 ~~~~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                      +..++...+..           ...+++.....++.+++.||+|||   +.+|+||||||+|||          |||+|+
T Consensus       147 ~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~  223 (437)
T 4aw2_A          147 NNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCL  223 (437)
T ss_dssp             SEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhh
Confidence            76554333221           245777888889999999999996   567999999999998          999998


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ....+........+||++|||||++
T Consensus       224 ~~~~~~~~~~~~~~GT~~Y~APE~l  248 (437)
T 4aw2_A          224 KLMEDGTVQSSVAVGTPDYISPEIL  248 (437)
T ss_dssp             ECCTTSCEECCSCCSCGGGCCHHHH
T ss_pred             hcccCCCcccccccCCcCeeChHHH
Confidence            7765544333445699999999974

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.85  E-value=3.2e-21  Score=207.96  Aligned_cols=161  Identities=24%  Similarity=0.254  Sum_probs=127.0

Q ss_pred             cccchhHHHHHhhc----------ccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCC
Q 047196          663 RRFSYQDLFRATEK----------FSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHR  731 (827)
Q Consensus       663 ~~~~~~~~~~~~~~----------~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~  731 (827)
                      +.++++++..+++.          |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|++++++++||
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            34667777766653          666789999999999999975 7999999999765545567789999999999999


Q ss_pred             CceEEEeeeecCCceeeeeeccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------
Q 047196          732 NHVKRISSCSNEDFKALDCLHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------  796 (827)
Q Consensus       732 niv~~~~~~~~~~~~~l~~l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------  796 (827)
                      |||++++++...+..++...+..         ...+++.....++.++++||+|||   +.+|+||||||+||+      
T Consensus       103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~  179 (321)
T 2c30_A          103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGR  179 (321)
T ss_dssp             TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCC
T ss_pred             CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCc
Confidence            99999999988765554333221         235788889999999999999996   468999999999998      


Q ss_pred             ----eecccccccCCCccccccceecccccccccC
Q 047196          797 ----DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                          |||+++........ .....||++|+|||++
T Consensus       180 ~kl~Dfg~~~~~~~~~~~-~~~~~gt~~y~aPE~~  213 (321)
T 2c30_A          180 VKLSDFGFCAQISKDVPK-RKSLVGTPYWMAPEVI  213 (321)
T ss_dssp             EEECCCTTCEECCSSSCC-BCCCCSCGGGCCHHHH
T ss_pred             EEEeeeeeeeecccCccc-cccccCCccccCHhhh
Confidence                99999876544322 2334699999999963

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=6.9e-21  Score=203.93  Aligned_cols=189  Identities=21%  Similarity=0.346  Sum_probs=166.9

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|++|++++|+++. +| .+..+++|+.|++++|++++..+  +..+++|++|+|++|++++. | .+..+++|+.|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence            78899999998875 45 58889999999999999997655  99999999999999999863 3 68899999999999


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++ +|. +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..++.|+.|++++|++++..
T Consensus       116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          116 STQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence            999986 443 8999999999999999998655  8899999999999999997555  889999999999999999765


Q ss_pred             cccccCCCCCCEEECCCCcceeecC-CCCcCCceEeCcCCcCee
Q 047196          541 PSTIGDLKDLQNISLACNGLEGLIP-ESFGYLTELNLSFNKLEG  583 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~L~~L~ls~N~l~g  583 (827)
                      +  +..+++|+.|+|++|++++..| ..+.+|+.|++++|++++
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             h--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence            4  8999999999999999998765 334589999999999976

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.85  E-value=9.2e-22  Score=212.23  Aligned_cols=159  Identities=35%  Similarity=0.532  Sum_probs=126.0

Q ss_pred             cchhHHHHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      +.+.++..++++|+..+.||+|+||.||+|+.++|+.||||++........+.+.+|++++++++|||||++++++...+
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  108 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN  108 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            34445556778999999999999999999998889999999987665556778999999999999999999999998766


Q ss_pred             ceee--eeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecc
Q 047196          745 FKAL--DCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI  800 (827)
Q Consensus       745 ~~~l--~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGl  800 (827)
                      ..++  ++....            ...+++.++..++.++++||+|||   +++|+||||||+||+          |||+
T Consensus       109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  185 (321)
T 2qkw_B          109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGI  185 (321)
T ss_dssp             CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTT
T ss_pred             eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeeccc
Confidence            4443  322211            123778889999999999999996   468999999999998          9999


Q ss_pred             cccccCCCcc-ccccceeccccccccc
Q 047196          801 GRLLTGDRSM-IQTETLVTIGYMAPGL  826 (827)
Q Consensus       801 a~~~~~~~~~-~~~~~~gt~~Y~APE~  826 (827)
                      ++........ ......||++|+|||+
T Consensus       186 ~~~~~~~~~~~~~~~~~gt~~y~aPE~  212 (321)
T 2qkw_B          186 SKKGTELDQTHLSTVVKGTLGYIDPEY  212 (321)
T ss_dssp             CEECSSSSCCCCBCCCEEETTTCCHHH
T ss_pred             ccccccccccccccccCCCccccCHHH
Confidence            9875432221 2233458999999996

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=6.6e-21  Score=191.76  Aligned_cols=161  Identities=23%  Similarity=0.245  Sum_probs=97.4

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      ++++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            46666666666665555556666666666666666665555555666666666666666665555555666666666666


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.       ++.|+.|+++.|+++|.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCcee
Confidence            6666654454556666666666666666655555556666666666666655542       234555566666666666


Q ss_pred             cccccCCC
Q 047196          541 PSTIGDLK  548 (827)
Q Consensus       541 p~~~~~l~  548 (827)
                      |++++.++
T Consensus       182 p~~~~~l~  189 (208)
T 2o6s_A          182 RNSAGSVA  189 (208)
T ss_dssp             BCTTSSBC
T ss_pred             eccCcccc
Confidence            66555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=3.6e-21  Score=193.70  Aligned_cols=152  Identities=25%  Similarity=0.242  Sum_probs=91.0

Q ss_pred             cEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCC
Q 047196          383 ENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGN  462 (827)
Q Consensus       383 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  462 (827)
                      +.++.+++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            456666666663 34333  346777777777777666666667777777777777776555555666666666666666


Q ss_pred             cccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceee
Q 047196          463 KFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFS  537 (827)
Q Consensus       463 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  537 (827)
                      ++++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..++.|+.|++++|.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            666544445566666666666666666555555555555555555555555444434444444444444444443

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.84  E-value=6.6e-21  Score=204.42  Aligned_cols=150  Identities=23%  Similarity=0.369  Sum_probs=119.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      ++|...++||+|+||.||+|+.. +|+.||||++........+.|.+|++++++++|||||++++++.++...++...+.
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   89 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI   89 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence            57888899999999999999874 68999999987666667788999999999999999999999998876554432222


Q ss_pred             -----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc-
Q 047196          754 -----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI-  811 (827)
Q Consensus       754 -----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~-  811 (827)
                                 ....+.+.++..++.++++||+|||   +.+|+||||||+||+          |||+++......... 
T Consensus        90 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  166 (310)
T 3s95_A           90 KGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPE  166 (310)
T ss_dssp             TTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC-------
T ss_pred             CCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceeccccccccc
Confidence                       1345778889999999999999996   567999999999998          999998764332211 


Q ss_pred             ------------cccceecccccccccC
Q 047196          812 ------------QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ------------~~~~~gt~~Y~APE~l  827 (827)
                                  ....+||++|+|||++
T Consensus       167 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~  194 (310)
T 3s95_A          167 GLRSLKKPDRKKRYTVVGNPYWMAPEMI  194 (310)
T ss_dssp             -------------CCCCSCGGGCCHHHH
T ss_pred             ccccccccccccccccCCCcceeCHHHh
Confidence                        0134589999999963

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.84  E-value=7.6e-21  Score=205.35  Aligned_cols=149  Identities=26%  Similarity=0.338  Sum_probs=120.3

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++...  .....+++.+|+++++.++|||||++++++......++..
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            46789999999999999999986 57999999999653  3345677899999999999999999999998776555433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...++......++.++++|++|||   +.+|+||||||+||+          |||+++....... 
T Consensus        94 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-  169 (328)
T 3fe3_A           94 EYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK-  169 (328)
T ss_dssp             CCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG-
T ss_pred             ECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc-
Confidence            3322          134667778899999999999996   568999999999998          9999987654332 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||++|+|||++
T Consensus       170 -~~~~~gt~~y~aPE~~  185 (328)
T 3fe3_A          170 -LDAFCGAPPYAAPELF  185 (328)
T ss_dssp             -GGTTSSSGGGCCHHHH
T ss_pred             -cccccCCcceeCcccc
Confidence             2345699999999963

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=2.5e-20  Score=203.49  Aligned_cols=204  Identities=16%  Similarity=0.124  Sum_probs=132.9

Q ss_pred             CcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCcccc-
Q 047196           86 CNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSS-  164 (827)
Q Consensus        86 C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~-  164 (827)
                      |.|..|.|+.            ++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|||++|++.+.+|. 
T Consensus         9 C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X            9 CSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             EETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred             eeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence            6777777763            3344 456555  36789999999999865556789999999999999998765543 


Q ss_pred             ccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCcc
Q 047196          165 VTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTI  244 (827)
Q Consensus       165 ~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  244 (827)
                      .|.+++++                        ++.+.++.|+++...|..|.++++|++|++++|++++..+..+....+
T Consensus        74 ~f~~L~~l------------------------~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  129 (350)
T 4ay9_X           74 VFSNLPKL------------------------HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ  129 (350)
T ss_dssp             SBCSCTTC------------------------CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred             Hhhcchhh------------------------hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence            23333322                        234556667777777777888888888888888887766666666777


Q ss_pred             ccEEEccc-ccccccccccccCcC-CCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEe
Q 047196          245 LRKISLRN-NKLRGEIPHEIGYLP-NLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLN  322 (827)
Q Consensus       245 L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  322 (827)
                      +..|++.+ |++....+..|..+. .+++|+|++|+++.+ |...+...+|+++++++++..+.+|...+..+++|++|+
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence            77788765 456544445566654 577888888888754 333444455666666554444445444433444555555


Q ss_pred             CcCCccc
Q 047196          323 LGLNRFS  329 (827)
Q Consensus       323 L~~N~l~  329 (827)
                      |++|+++
T Consensus       209 Ls~N~l~  215 (350)
T 4ay9_X          209 ISRTRIH  215 (350)
T ss_dssp             CTTSCCC
T ss_pred             cCCCCcC
Confidence            5555544

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.84  E-value=2.1e-21  Score=215.83  Aligned_cols=156  Identities=21%  Similarity=0.277  Sum_probs=122.7

Q ss_pred             HHHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          669 DLFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       669 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      +.....++|+..++||+|+||+||+|+.+ +|+.||||++.+..   ....+.+.+|++++.+++|||||++++++.+.+
T Consensus        55 ~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~  134 (412)
T 2vd5_A           55 EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN  134 (412)
T ss_dssp             HHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred             hccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC
Confidence            33445678999999999999999999875 69999999996532   122345889999999999999999999998877


Q ss_pred             ceeeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          745 FKALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       745 ~~~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      ..++...+..           ...+.+.....++.+++.||+|||   +.+|+||||||+|||          |||+|+.
T Consensus       135 ~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~~  211 (412)
T 2vd5_A          135 YLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLK  211 (412)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhhee
Confidence            6554333221           135677777889999999999996   568999999999998          9999987


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...+........+||++|||||++
T Consensus       212 ~~~~~~~~~~~~~Gt~~Y~APE~l  235 (412)
T 2vd5_A          212 LRADGTVRSLVAVGTPDYLSPEIL  235 (412)
T ss_dssp             CCTTSCEECSSCCSCGGGCCHHHH
T ss_pred             ccCCCccccceeccccCcCCHHHH
Confidence            765443222335699999999974

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=6.3e-21  Score=219.30  Aligned_cols=166  Identities=27%  Similarity=0.305  Sum_probs=124.2

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|++|+|++|+|+ .+|   ..+++|+.|+|++|++++ +|. +.+  +|+.|+|++|++++ +|.   .+++|+.|+|+
T Consensus        81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  148 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD  148 (571)
T ss_dssp             TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred             CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence            6788888888887 566   446788888888888886 555 554  78888888888876 565   56778888888


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccC-------ceEEccc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVV-------IGINLSR  533 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L-------~~L~Ls~  533 (827)
                      +|++++ +|.   .+++|++|+|++|.+++ +|. +.  ++|+.|||++|+|+ .+|. +..  .|       +.|+|++
T Consensus       149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          149 NNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred             CCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence            888875 665   46778888888888877 555 54  78888888888887 5555 544  66       8888888


Q ss_pred             ceeeecccccccCCCCCCEEECCCCcceeecCCCCcCC
Q 047196          534 NNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGYL  571 (827)
Q Consensus       534 N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~L  571 (827)
                      |+|+ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus       217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            8888 578888888888888888888888888766543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.84  E-value=6.8e-21  Score=204.39  Aligned_cols=150  Identities=27%  Similarity=0.392  Sum_probs=117.4

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      .++|+..+.||+|+||.||+|+..+|+.||||++....  ....+.+.+|++++++++|||||++++++..+...++  +
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            36788999999999999999998889999999986542  2234678999999999999999999999987765444  3


Q ss_pred             eecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          750 CLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       750 ~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ++..        ....+.+.....++.++++||+|||   +.+|+||||||+||+          |||+|+........ 
T Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~-  175 (311)
T 3niz_A          100 FMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS-  175 (311)
T ss_dssp             CCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC--
T ss_pred             CCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCccc-
Confidence            2221        1234778888899999999999996   568999999999998          99999876433221 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||++|+|||++
T Consensus       176 ~~~~~~t~~y~aPE~~  191 (311)
T 3niz_A          176 YTHEVVTLWYRAPDVL  191 (311)
T ss_dssp             --CCCCCCTTCCHHHH
T ss_pred             ccCCcccCCcCCHHHh
Confidence            2334589999999963

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.84  E-value=4.5e-21  Score=212.99  Aligned_cols=156  Identities=22%  Similarity=0.241  Sum_probs=122.1

Q ss_pred             HHHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          669 DLFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       669 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      ++....++|+..++||+|+||+||+|+.+ +|+.||||++.....   ...+.+.+|+++++.++|||||++++++.++.
T Consensus        63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~  142 (410)
T 3v8s_A           63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR  142 (410)
T ss_dssp             HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence            34445678999999999999999999875 589999999865321   12345889999999999999999999998877


Q ss_pred             ceeeeeeccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          745 FKALDCLHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       745 ~~~l~~l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      ..++...+..         ...+.+.....++.+++.||+|||   +.+|+||||||+|||          |||+|+...
T Consensus       143 ~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~  219 (410)
T 3v8s_A          143 YLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMN  219 (410)
T ss_dssp             EEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEeec
Confidence            6554333322         134566777889999999999996   568999999999998          999998775


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..........+||+.|||||++
T Consensus       220 ~~~~~~~~~~~gt~~Y~APE~l  241 (410)
T 3v8s_A          220 KEGMVRCDTAVGTPDYISPEVL  241 (410)
T ss_dssp             TTSEEECCSCCSCGGGCCHHHH
T ss_pred             cCCcccccCCcCCccccCHHHh
Confidence            5433223345699999999974

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.83  E-value=1.2e-20  Score=201.08  Aligned_cols=150  Identities=27%  Similarity=0.325  Sum_probs=120.2

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .++|+..+.||+|+||.||+|+. .+|+.||||++........+.+.+|+.++++++|||||++++++..++..++...+
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            35788899999999999999985 56899999998755444456789999999999999999999999877755543333


Q ss_pred             cCC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 STN---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 ~~~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      ...         ..+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++........ ..
T Consensus        99 ~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~  174 (297)
T 3fxz_A           99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RS  174 (297)
T ss_dssp             CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC-BC
T ss_pred             CCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccc-cC
Confidence            222         23667778899999999999996   568999999999998          99999876544332 23


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ..+||+.|+|||++
T Consensus       175 ~~~gt~~y~aPE~~  188 (297)
T 3fxz_A          175 TMVGTPYWMAPEVV  188 (297)
T ss_dssp             CCCSCGGGCCHHHH
T ss_pred             CccCCcCccChhhh
Confidence            34699999999963

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.83  E-value=2.6e-20  Score=199.38  Aligned_cols=162  Identities=28%  Similarity=0.437  Sum_probs=129.0

Q ss_pred             cccccchhHHHHHhhccccc------ceEecCCceEEEEEEecCCcEEEEEEEccc----chHHHHHHHHHHHHHHhcCC
Q 047196          661 TLRRFSYQDLFRATEKFSKE------NLIGVGSFGSVYKGRLHDGIEVAIKVFHQN----CAMALKSFEAECEVMKNIRH  730 (827)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~------~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~----~~~~~~~~~~Ei~~l~~l~H  730 (827)
                      ..+.+++.++..++.+|...      +.||+|+||.||+|+. +++.||||++...    .....+.+.+|++++++++|
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            34678999999999999888      8999999999999987 5789999998643    23345789999999999999


Q ss_pred             CCceEEEeeeecCCceeeeeecc-------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          731 RNHVKRISSCSNEDFKALDCLHS-------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       731 ~niv~~~~~~~~~~~~~l~~l~~-------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                      |||+++++++...+..++...+.             ....+++..+..++.++++||+|||   +.+|+||||||+||+ 
T Consensus        90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili  166 (307)
T 2nru_A           90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILL  166 (307)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred             CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEE
Confidence            99999999998766444322221             1234778888999999999999996   568999999999998 


Q ss_pred             ---------eecccccccCCCccc-cccceeccccccccc
Q 047196          797 ---------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       797 ---------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                               |||+++......... .....||++|+|||+
T Consensus       167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~  206 (307)
T 2nru_A          167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEA  206 (307)
T ss_dssp             CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHH
T ss_pred             cCCCcEEEeecccccccccccccccccccCCCcCcCChHH
Confidence                     999998765433221 222458999999996

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.83  E-value=1.6e-20  Score=203.40  Aligned_cols=149  Identities=26%  Similarity=0.296  Sum_probs=118.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||+||+|+.. +|+.||||++....   ....+.+.+|++++++++|||||++++++...+..++..
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence            57889999999999999999865 68999999996532   223467889999999999999999999998877655433


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+...          ..++......++.+++.||+|||   +.+|+||||||+||+          |||+++........
T Consensus        85 E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~  161 (337)
T 1o6l_A           85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT  161 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCC
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCc
Confidence            33222          34566777889999999999996   568999999999998          99999864333222


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||+.|||||++
T Consensus       162 -~~~~~gt~~y~aPE~~  177 (337)
T 1o6l_A          162 -MKTFCGTPEYLAPEVL  177 (337)
T ss_dssp             -BCCCEECGGGCCGGGG
T ss_pred             -ccccccChhhCChhhh
Confidence             2335699999999974

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.83  E-value=5.3e-21  Score=205.27  Aligned_cols=148  Identities=28%  Similarity=0.310  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..++||+|+||+||+|+.. +|+.||||++...  ......++.+|+..+.++ +|+|+|+++++|.+....++..
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            57999999999999999999875 7999999998643  233344566677666665 8999999999998877655433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+++..+..++.+++.||+|||   +.+|+||||||+|||          |||+++....... 
T Consensus       137 e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~-  212 (311)
T 3p1a_A          137 ELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA-  212 (311)
T ss_dssp             ECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC-----
T ss_pred             eccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCC-
Confidence            3221          235788889999999999999996   467999999999998          9999887643322 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....||++|+|||++
T Consensus       213 -~~~~~gt~~y~aPE~~  228 (311)
T 3p1a_A          213 -GEVQEGDPRYMAPELL  228 (311)
T ss_dssp             ---CCCCCGGGCCGGGG
T ss_pred             -CcccCCCccccCHhHh
Confidence             2334589999999974

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=5.5e-20  Score=200.74  Aligned_cols=106  Identities=17%  Similarity=0.194  Sum_probs=62.6

Q ss_pred             cEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCC
Q 047196          222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDN  301 (827)
Q Consensus       222 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n  301 (827)
                      +.++.++++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|                 
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-----------------   71 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-----------------   71 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC-----------------
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC-----------------
Confidence            35566666665 445444  2456666666666664433456666666666666666554443                 


Q ss_pred             ccccccChhhhcCCCCccE-EeCcCCccccccCccccCCCCCcEEEcCCCccee
Q 047196          302 SLLGSFSLGIDLSLPNVER-LNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSG  354 (827)
Q Consensus       302 ~l~~~~~~~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  354 (827)
                             ...+..++++++ +.++.|+++...|..|..+++|++|++++|++++
T Consensus        72 -------~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           72 -------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             -------TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             -------hhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence                   322234455443 4556677777667777777777777777776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.83  E-value=5.3e-22  Score=236.61  Aligned_cols=258  Identities=18%  Similarity=0.224  Sum_probs=90.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCCcCCCCCCCCCCCCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCC
Q 047196           52 NITTDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSH  131 (827)
Q Consensus        52 ~~~~~~~aLl~~k~~~~~~~~~~l~~w~~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~  131 (827)
                      ..+.++++|+++...........-..|....+..+.|.++.++.  .+++.|+|..+++... +..     .|+.++|+.
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~  200 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQA-----LLQHKKLSQ  200 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhh-----HhhcCccCc
Confidence            45678899999988763333333345654455678899998875  6899999999988763 332     334455555


Q ss_pred             CCCCc---------cCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEe
Q 047196          132 NKLSG---------DIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFL  202 (827)
Q Consensus       132 N~l~g---------~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~L  202 (827)
                      |.|.+         ..|..+..+++|++|||++|.+. .+|..+++++                         +|++|+|
T Consensus       201 ~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-------------------------~L~~L~L  254 (727)
T 4b8c_D          201 YSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD-------------------------FLTRLYL  254 (727)
T ss_dssp             ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCC-------------------------SCSCCBC
T ss_pred             ccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCC-------------------------CCCEEEe
Confidence            54442         34556666777777777777765 3444444444                         4555555


Q ss_pred             ecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCccc
Q 047196          203 AKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV  282 (827)
Q Consensus       203 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  282 (827)
                      ++|.++ .+|..|+++++|++|+|++|.|+ .+|..|++|++|++|+|++|.|+ .+|..|+.+++|++|+|++|.+++.
T Consensus       255 s~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          255 NGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             TTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             eCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence            555554 45555555555555555555555 44555555555666666665554 4555555566666666666666555


Q ss_pred             CchhhhcCCC-ccEEEecCCccccccChhhhcCCCCccEEeCcCC--------ccccccCccccCCCCCcEEEcCCCcce
Q 047196          283 VPAAIFNMST-VKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLN--------RFSGTIPSFITNASKLVYLDMGTNSFS  353 (827)
Q Consensus       283 ~p~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~p~~~~~l~~L~~L~Ls~N~l~  353 (827)
                      +|..+..+.. +..+++++|.+.|.+|.       .|+.|+++.|        .+.+..+..+.++.++....+++|-+.
T Consensus       332 ~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          332 FLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C-----------------------------------------CCC
T ss_pred             ChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            5555543321 12244555555544442       2334444444        233333344445555555566666554

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.83  E-value=2e-20  Score=205.14  Aligned_cols=150  Identities=24%  Similarity=0.404  Sum_probs=120.2

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ..++|...+.||+|+||.||+|+.. +|+.||||++...  .....+.+.+|++++++++|||||++++++.+.+..++.
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            3467999999999999999999865 6899999999653  234457799999999999999999999999887765543


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccC
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTG  806 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~  806 (827)
                      ..+..          ...+++.+...++.++++||+|||   +.+|+||||||+||+             |||+++....
T Consensus       107 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~  183 (362)
T 2bdw_A          107 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  183 (362)
T ss_dssp             ECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecC
Confidence            33221          234677888899999999999996   568999999999998             9999987653


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...  ....+||++|+|||++
T Consensus       184 ~~~--~~~~~gt~~y~aPE~~  202 (362)
T 2bdw_A          184 SEA--WHGFAGTPGYLSPEVL  202 (362)
T ss_dssp             CCS--CCCSCSCTTTCCHHHH
T ss_pred             Ccc--cccCCCCccccCHHHH
Confidence            322  2234699999999973

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.83  E-value=2.1e-20  Score=198.62  Aligned_cols=149  Identities=26%  Similarity=0.359  Sum_probs=119.1

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|||||++++++..+...++...
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            46888899999999999999875 68999999996432  3345678899999999999999999999988775544322


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.          ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+|+........ 
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-  157 (292)
T 3o0g_A           82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC-  157 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSC-
T ss_pred             cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcccc-
Confidence            21          1346778888999999999999996   568999999999998          99999876533222 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....||+.|+|||++
T Consensus       158 ~~~~~~t~~y~aPE~~  173 (292)
T 3o0g_A          158 YSAEVVTLWYRPPDVL  173 (292)
T ss_dssp             CCSCCSCGGGCCHHHH
T ss_pred             ccCCccccCCcChHHH
Confidence            2334589999999963

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.83  E-value=1.9e-20  Score=206.01  Aligned_cols=150  Identities=26%  Similarity=0.443  Sum_probs=116.2

Q ss_pred             hcccccceEecCCceEEEEEEec--------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH--------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      ++|...+.||+|+||.||+|+..        ++..||||++.... ....+++.+|+++++++ +|||||+++++|...+
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  160 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  160 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence            57888899999999999999852        35679999997543 34567899999999999 8999999999998766


Q ss_pred             ceeeeeeccCC--------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          745 FKALDCLHSTN--------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       745 ~~~l~~l~~~~--------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                      ..++...+...                          ..+.+.+...++.++++||+|||   +.+|+||||||+||+  
T Consensus       161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~  237 (370)
T 2psq_A          161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVT  237 (370)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEC
T ss_pred             CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEEC
Confidence            54442222111                          23577788899999999999996   568999999999998  


Q ss_pred             --------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                              |||+|+......... .....+|+.|||||++
T Consensus       238 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  277 (370)
T 2psq_A          238 ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL  277 (370)
T ss_dssp             TTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHH
T ss_pred             CCCCEEEccccCCcccCcccceecccCCCcccceECHhHh
Confidence                    999998765433221 1223478999999963

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.82  E-value=1.8e-20  Score=204.67  Aligned_cols=149  Identities=20%  Similarity=0.312  Sum_probs=117.4

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch-----HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-----MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-----~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      +.|+..+.||+|+||.||+|+.. +|+.||||++.....     ...+.+.+|++++++++|||||++++++...+..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            56888999999999999999864 689999999864321     135679999999999999999999999988775544


Q ss_pred             eeeccCC--------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eeccc
Q 047196          749 DCLHSTN--------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIG  801 (827)
Q Consensus       749 ~~l~~~~--------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla  801 (827)
                      ...+...              ..+++.....++.++++||+|||   +.+|+||||||+||+             |||++
T Consensus       104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a  180 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA  180 (351)
T ss_dssp             EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred             EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence            3332221              13566777889999999999996   568999999999998             99999


Q ss_pred             ccccCCCccccccceecccccccccC
Q 047196          802 RLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +........ ....+||+.|+|||++
T Consensus       181 ~~~~~~~~~-~~~~~gt~~y~aPE~~  205 (351)
T 3c0i_A          181 IQLGESGLV-AGGRVGTPHFMAPEVV  205 (351)
T ss_dssp             EECCTTSCB-CCCCCSCGGGCCHHHH
T ss_pred             eEecCCCee-ecCCcCCcCccCHHHH
Confidence            876543321 2335699999999973

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.82  E-value=2.3e-20  Score=201.90  Aligned_cols=151  Identities=26%  Similarity=0.375  Sum_probs=112.1

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF------  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~------  745 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+...      
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            467889999999999999999975 79999999997533 3355789999999999999999999998855321      


Q ss_pred             ---------------------------------------------------ee--eeeeccC-----------CCCCCHH
Q 047196          746 ---------------------------------------------------KA--LDCLHST-----------NCSLNIF  761 (827)
Q Consensus       746 ---------------------------------------------------~~--l~~l~~~-----------~~~l~~~  761 (827)
                                                                         .+  +++....           .....+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                               11  2222111           0123344


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc-----------cccccceeccc
Q 047196          762 DKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS-----------MIQTETLVTIG  820 (827)
Q Consensus       762 ~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~-----------~~~~~~~gt~~  820 (827)
                      ....++.|+++||+|||   +.+|+||||||+||+          |||+++.......           ......+||+.
T Consensus       165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence            56789999999999996   568999999999998          9999987754321           11123458999


Q ss_pred             ccccccC
Q 047196          821 YMAPGLL  827 (827)
Q Consensus       821 Y~APE~l  827 (827)
                      |+|||++
T Consensus       242 y~aPE~~  248 (332)
T 3qd2_B          242 YMSPEQI  248 (332)
T ss_dssp             GSCHHHH
T ss_pred             ccChHHh
Confidence            9999963

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.82  E-value=2.8e-20  Score=204.79  Aligned_cols=148  Identities=25%  Similarity=0.335  Sum_probs=118.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|++++++++|||||++++++......++..
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            57888999999999999999865 58999999986532   123467889999999999999999999998877554432


Q ss_pred             ecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+.          ....+++.....++.+++.||+|||   +.+|+||||||+||+          |||+|+....... 
T Consensus        95 e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~-  170 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ-  170 (384)
T ss_dssp             CCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCC-
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCCCc-
Confidence            222          1235677788899999999999996   568999999999998          9999987654332 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||++|+|||++
T Consensus       171 -~~~~~gt~~Y~aPE~~  186 (384)
T 4fr4_A          171 -ITTMAGTKPYMAPEMF  186 (384)
T ss_dssp             -BCCCCSCGGGCCGGGT
T ss_pred             -eeccCCCccccCCeee
Confidence             2345699999999975

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.82  E-value=2.2e-20  Score=201.48  Aligned_cols=152  Identities=25%  Similarity=0.302  Sum_probs=117.8

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc------ee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF------KA  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~------~~  747 (827)
                      ..+|+..++||+|+||.||+|+.. ++.||||++.... .....+++|+.++++++|||||++++++.....      .+
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence            357888999999999999999876 7899999996543 234456779999999999999999999977542      23


Q ss_pred             eeeeccC-------CCCCCHHHHHHHHHHHHHHHHHHHhc-------CCCCeEEccCCCccee----------eeccccc
Q 047196          748 LDCLHST-------NCSLNIFDKLNIMIDVASALEYLHFS-------HSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       748 l~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~Lh~~-------h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      +++....       ...+++.....++.++++||+|||..       |+++|+||||||+||+          |||+|+.
T Consensus       101 ~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~  180 (322)
T 3soc_A          101 TAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALK  180 (322)
T ss_dssp             EECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccc
Confidence            3333221       13477888899999999999999643       3459999999999998          9999987


Q ss_pred             ccCCCccc-cccceecccccccccC
Q 047196          804 LTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ........ .....||+.|+|||++
T Consensus       181 ~~~~~~~~~~~~~~gt~~y~aPE~~  205 (322)
T 3soc_A          181 FEAGKSAGDTHGQVGTRRYMAPEVL  205 (322)
T ss_dssp             ECTTSCCCCCTTCCCCGGGCCHHHH
T ss_pred             cccccCccccccCccCccccCHhhc
Confidence            75443322 2234589999999963

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.82  E-value=3e-20  Score=205.86  Aligned_cols=150  Identities=19%  Similarity=0.322  Sum_probs=117.1

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcC--CCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIR--HRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~--H~niv~~~~~~~~~~~~~l~~  750 (827)
                      +.|...+.||+|+||.||+|...+++.||||++...  .....+.+.+|++++++++  |+|||++++++..++..++..
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            458889999999999999999878999999998643  3445678999999999997  499999999998877655433


Q ss_pred             ecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccccCCCcc-c
Q 047196          751 LHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLTGDRSM-I  811 (827)
Q Consensus       751 l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~~~~~~-~  811 (827)
                      ...         ....+++.++..++.++++||+|||   +.+|+||||||+|||         |||+|+.+...... .
T Consensus       136 E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~~kl~DFG~a~~~~~~~~~~~  212 (390)
T 2zmd_A          136 ECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVV  212 (390)
T ss_dssp             ECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEESSSCEEECCCSSSCCC--------
T ss_pred             ecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEECCeEEEEecCccccccCCCcccc
Confidence            221         1235677788899999999999995   678999999999998         99999876543322 1


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||++|||||++
T Consensus       213 ~~~~~gt~~y~aPE~~  228 (390)
T 2zmd_A          213 KDSQVGAVNYMPPEAI  228 (390)
T ss_dssp             -CCSCCCGGGCCHHHH
T ss_pred             CCCCCcCCCccChHHh
Confidence            2335699999999973

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.82  E-value=4e-20  Score=197.08  Aligned_cols=149  Identities=27%  Similarity=0.420  Sum_probs=113.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--------------------------HHHHHHHHHHHHHHh
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--------------------------MALKSFEAECEVMKN  727 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--------------------------~~~~~~~~Ei~~l~~  727 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++.....                          ...+.+.+|++++++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   92 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK   92 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence            57888999999999999999864 689999999864321                          113568999999999


Q ss_pred             cCCCCceEEEeeeecC--Cceee--eeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          728 IRHRNHVKRISSCSNE--DFKAL--DCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       728 l~H~niv~~~~~~~~~--~~~~l--~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                      ++|||||++++++...  ...++  ++...       ....+++.+...++.++++||+|||   +.+|+||||||+||+
T Consensus        93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil  169 (298)
T 2zv2_A           93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPSNLL  169 (298)
T ss_dssp             CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEE
T ss_pred             CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEE
Confidence            9999999999998763  33333  33221       1235678888999999999999996   568999999999998


Q ss_pred             ----------eecccccccCCCccccccceecccccccccC
Q 047196          797 ----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                                |||+++........ .....||+.|+|||++
T Consensus       170 ~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt~~y~aPE~~  209 (298)
T 2zv2_A          170 VGEDGHIKIADFGVSNEFKGSDAL-LSNTVGTPAFMAPESL  209 (298)
T ss_dssp             ECTTSCEEECCCTTCEECSSSSCE-ECCCCSCGGGCCGGGC
T ss_pred             ECCCCCEEEecCCCcccccccccc-ccCCcCCccccChhhh
Confidence                      99999876543322 2334689999999974

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.82  E-value=1.9e-20  Score=202.24  Aligned_cols=150  Identities=25%  Similarity=0.464  Sum_probs=115.0

Q ss_pred             hcccccceEecCCceEEEEEEec----CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l-  748 (827)
                      ++|...+.||+|+||.||+|+..    .+..||||++... .....+.|.+|++++++++|||||++++++......++ 
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            46788899999999999999874    3456999999764 34456789999999999999999999999987654443 


Q ss_pred             -eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +++..         ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus       129 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  205 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP  205 (325)
T ss_dssp             EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC---
T ss_pred             eeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccCc
Confidence             33321         2245778889999999999999996   568999999999998          999998775433


Q ss_pred             ccc--cccceecccccccccC
Q 047196          809 SMI--QTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~--~~~~~gt~~Y~APE~l  827 (827)
                      ...  .....+|++|+|||++
T Consensus       206 ~~~~~~~~~~~t~~y~aPE~~  226 (325)
T 3kul_A          206 DAAYTTTGGKIPIRWTAPEAI  226 (325)
T ss_dssp             -CCEECC---CCGGGSCHHHH
T ss_pred             cceeeccCCCCcccccCHhHh
Confidence            221  1222368899999963

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.82  E-value=1.5e-20  Score=212.82  Aligned_cols=149  Identities=24%  Similarity=0.338  Sum_probs=112.7

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      .++|+..+.||+|+||+||+|+.. +|+.||||++...  .....+++.+|+++++.++|||||++++++....      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            467889999999999999999864 6899999999754  3344578899999999999999999999986543      


Q ss_pred             --ceeeeeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          745 --FKALDCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       745 --~~~l~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                        +.+++++...     ...+++.+...++.|+++||+|||   +.+|+||||||+|||          |||+|+.....
T Consensus       141 ~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  217 (464)
T 3ttj_A          141 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS  217 (464)
T ss_dssp             EEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC-----C
T ss_pred             eEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCC
Confidence              2233333221     234777888899999999999996   568999999999998          99999876543


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..  .+..+||++|+|||++
T Consensus       218 ~~--~~~~~gt~~y~aPE~~  235 (464)
T 3ttj_A          218 FM--MTPYVVTRYYRAPEVI  235 (464)
T ss_dssp             CC--C----CCCTTCCHHHH
T ss_pred             cc--cCCCcccccccCHHHH
Confidence            22  2345699999999974

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.82  E-value=9.5e-21  Score=200.89  Aligned_cols=149  Identities=28%  Similarity=0.406  Sum_probs=115.6

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..+.||+|+||.||+|+..+|+.||||++.....  ...+.+.+|++++++++|||||++++++...+..++...+
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            46888899999999999999988899999999865432  2246788999999999999999999999877654442222


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++........ .
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~  157 (288)
T 1ob3_A           82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK-Y  157 (288)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC------
T ss_pred             cCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccc-c
Confidence            1          2245778888899999999999996   568999999999998          99999876433221 2


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||+.|+|||++
T Consensus       158 ~~~~~t~~y~aPE~~  172 (288)
T 1ob3_A          158 THEIVTLWYRAPDVL  172 (288)
T ss_dssp             ----CCCTTCCHHHH
T ss_pred             ccccccccccCchhe
Confidence            234589999999963

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.82  E-value=1.9e-20  Score=212.35  Aligned_cols=150  Identities=27%  Similarity=0.392  Sum_probs=105.6

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-----c
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-----F  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-----~  745 (827)
                      .++|+..++||+|+||+||+|+.. +|+.||||++...  .....+++.+|++++++++|||||++++++....     .
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            367999999999999999999864 6899999998653  3345578999999999999999999999985432     1


Q ss_pred             ee--eeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          746 KA--LDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       746 ~~--l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+  +++...       ....+++.....++.++++||+|||   +.+|+||||||+|||          |||+|+....
T Consensus       132 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  208 (458)
T 3rp9_A          132 LYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDY  208 (458)
T ss_dssp             EEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTS
T ss_pred             EEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhccC
Confidence            22  222211       1235778888899999999999996   568999999999998          9999987643


Q ss_pred             CCc--------------------------cccccceeccccccccc
Q 047196          807 DRS--------------------------MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~--------------------------~~~~~~~gt~~Y~APE~  826 (827)
                      ...                          ...+..+||++|||||+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~  254 (458)
T 3rp9_A          209 PENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPEL  254 (458)
T ss_dssp             CTTCCCCCC---------------------------CCCTTCCHHH
T ss_pred             ccccccccccCccccccccccccccccccccccCCcccccccChHH
Confidence            211                          01233468999999996

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.82  E-value=2.5e-20  Score=202.91  Aligned_cols=150  Identities=19%  Similarity=0.329  Sum_probs=116.7

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCC--CCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRH--RNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H--~niv~~~~~~~~~~~~~l~~  750 (827)
                      +.|+..+.||+|+||.||+|...+++.||||++...  .....+.+.+|++++++++|  +|||++++++......++..
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            568889999999999999999888999999998643  34455789999999999987  99999999998877555433


Q ss_pred             ecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccccCCCcc-c
Q 047196          751 LHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLTGDRSM-I  811 (827)
Q Consensus       751 l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~~~~~~-~  811 (827)
                      ...         ....+++.++..++.++++||+|||   +.+|+||||||+|||         |||+|+........ .
T Consensus        89 e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~~~~~kl~DFG~a~~~~~~~~~~~  165 (343)
T 3dbq_A           89 ECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVV  165 (343)
T ss_dssp             CCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTEEEECCCSSSCCC--------
T ss_pred             eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEECCcEEEeecccccccCccccccc
Confidence            221         1235678888999999999999996   568999999999998         99999877544322 1


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||++|+|||++
T Consensus       166 ~~~~~gt~~y~aPE~~  181 (343)
T 3dbq_A          166 KDSQVGTVNYMPPEAI  181 (343)
T ss_dssp             ----CCCCSSCCHHHH
T ss_pred             CCCCcCCcCcCCHHHH
Confidence            2334699999999973

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.82  E-value=2.7e-20  Score=197.99  Aligned_cols=149  Identities=26%  Similarity=0.378  Sum_probs=113.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||.||+|+.. +++.||||++...   .....++|.+|++++++++|||||++++++...+..++..
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence            56888999999999999999864 6899999998532   2345678999999999999999999999998877554433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+++.....++.++++||+|||   +.+|+||||||+||+          |||+++........
T Consensus        91 e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  167 (294)
T 4eqm_A           91 EYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLT  167 (294)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC------
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccccc
Confidence            3222          134677888899999999999996   568999999999998          99999876543322


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                      ......||+.|+|||+
T Consensus       168 ~~~~~~gt~~y~aPE~  183 (294)
T 4eqm_A          168 QTNHVLGTVQYFSPEQ  183 (294)
T ss_dssp             -------CCSSCCHHH
T ss_pred             ccCccccCccccCHhH
Confidence            2233458999999996

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.82  E-value=2.5e-20  Score=203.34  Aligned_cols=150  Identities=23%  Similarity=0.272  Sum_probs=114.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l  748 (827)
                      .++|+..++||+|+||+||+|+.+ +|+.||||++....   ....+.+.+|+++++.+ +|||||++++++...+..++
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  101 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF  101 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence            467999999999999999999865 68999999997542   22345688999999998 69999999999988776554


Q ss_pred             eeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ...+...          ..+++.....++.+++.||+|||   +.+|+||||||+|||          |||+|+......
T Consensus       102 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~  178 (353)
T 3txo_A          102 VMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG  178 (353)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC--
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecccCC
Confidence            3333221          34677778889999999999996   568999999999998          999998643322


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .. ....+||+.|||||++
T Consensus       179 ~~-~~~~~gt~~y~aPE~~  196 (353)
T 3txo_A          179 VT-TATFCGTPDYIAPEIL  196 (353)
T ss_dssp             --------CCGGGCCHHHH
T ss_pred             cc-ccccCCCcCeEChhhc
Confidence            21 2335699999999973

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.82  E-value=2.7e-20  Score=205.60  Aligned_cols=150  Identities=23%  Similarity=0.236  Sum_probs=116.9

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l  748 (827)
                      .++|+..++||+|+||+||+|+.+ +++.||||++....   ....+.+.+|..+++++ +|||||++++++...+..++
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            367899999999999999999875 58899999997542   22345688999999887 89999999999988775554


Q ss_pred             eeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ...+...          ..+++.....++.+++.||+|||   +.+|+||||||+|||          |||+|+......
T Consensus       131 V~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~  207 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG  207 (396)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeecccCC
Confidence            3333222          34677778889999999999996   568999999999998          999998643322


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .. ....+||+.|||||++
T Consensus       208 ~~-~~~~~gt~~Y~aPE~l  225 (396)
T 4dc2_A          208 DT-TSTFCGTPNYIAPEIL  225 (396)
T ss_dssp             CC-BCCCCBCGGGCCHHHH
T ss_pred             Cc-cccccCCcccCCchhh
Confidence            22 2345699999999974

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.82  E-value=2.7e-20  Score=205.53  Aligned_cols=149  Identities=19%  Similarity=0.331  Sum_probs=120.6

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .+.|+..+.||+|+||.||+|+.. +|+.||+|++..........+.+|++++++++|||||++++++.+....++...+
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            357888999999999999999865 6899999999766555566899999999999999999999999877655443222


Q ss_pred             c-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCc
Q 047196          753 S-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~  809 (827)
                      .           ....+++.+...++.++++||+|||   +.+|+||||||+||+            |||+|+.......
T Consensus       130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~  206 (387)
T 1kob_A          130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI  206 (387)
T ss_dssp             CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC
T ss_pred             CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc
Confidence            1           1235678888999999999999996   568999999999998            9999987654332


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      .  ....||++|+|||++
T Consensus       207 ~--~~~~gt~~y~aPE~~  222 (387)
T 1kob_A          207 V--KVTTATAEFAAPEIV  222 (387)
T ss_dssp             E--EEECSSGGGCCHHHH
T ss_pred             e--eeeccCCCccCchhc
Confidence            1  234589999999973

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=206.76  Aligned_cols=146  Identities=23%  Similarity=0.394  Sum_probs=112.7

Q ss_pred             ccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC-
Q 047196          677 FSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST-  754 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~-  754 (827)
                      +...+.||+|+||.||+|+. .+|+.||||++........+++.+|++++++++|||||++++++...+..++...+.. 
T Consensus        91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~  170 (373)
T 2x4f_A           91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDG  170 (373)
T ss_dssp             EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence            44467899999999999986 4689999999987665667789999999999999999999999988775554333221 


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCcccc
Q 047196          755 ----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       755 ----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~~~~  812 (827)
                                ...+++.+...++.++++||+|||   +.+|+||||||+|||            |||+++.......  .
T Consensus       171 ~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~--~  245 (373)
T 2x4f_A          171 GELFDRIIDESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--L  245 (373)
T ss_dssp             CEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB--C
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc--c
Confidence                      234677788899999999999996   568999999999997            9999987654332  1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ...+||++|+|||++
T Consensus       246 ~~~~gt~~y~aPE~~  260 (373)
T 2x4f_A          246 KVNFGTPEFLAPEVV  260 (373)
T ss_dssp             CCCCSSCTTCCHHHH
T ss_pred             ccccCCCcEeChhhc
Confidence            234599999999963

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.82  E-value=1.6e-20  Score=197.02  Aligned_cols=148  Identities=26%  Similarity=0.408  Sum_probs=117.4

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~  752 (827)
                      ++|+..+.||+|+||.||+|+..+++.||||++..... ..+++.+|++++++++||||+++++++.+....++  ++..
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   88 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence            56888899999999999999988888999999975432 24578999999999999999999999987765443  3322


Q ss_pred             c---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 S---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 ~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .         ....+++.....++.++++|++|||   +.+|+||||||+||+          |||+++...........
T Consensus        89 ~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  165 (269)
T 4hcu_A           89 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST  165 (269)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTT
T ss_pred             CCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEecccccccccccccccccc
Confidence            1         1234678888899999999999996   567999999999998          99999876443222223


Q ss_pred             cceeccccccccc
Q 047196          814 ETLVTIGYMAPGL  826 (827)
Q Consensus       814 ~~~gt~~Y~APE~  826 (827)
                      ...+|+.|+|||+
T Consensus       166 ~~~~~~~y~aPE~  178 (269)
T 4hcu_A          166 GTKFPVKWASPEV  178 (269)
T ss_dssp             STTCCGGGCCHHH
T ss_pred             CcccccccCCHHH
Confidence            3347889999996

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.82  E-value=3.3e-20  Score=202.89  Aligned_cols=149  Identities=22%  Similarity=0.356  Sum_probs=118.8

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchH------HHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAM------ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~------~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      .+.|...+.||+|+||.||+|+.. +|+.||||++......      ..+.+.+|++++++++|||||++++++......
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            356888999999999999999865 6899999999754321      246789999999999999999999999887755


Q ss_pred             eeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eecccc
Q 047196          747 ALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGR  802 (827)
Q Consensus       747 ~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~  802 (827)
                      ++...+..          ...+++.+...++.+++.||+|||   +.+|+||||||+||+              |||+++
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~  167 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCE
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCCce
Confidence            54333221          235678888999999999999996   568999999999987              899998


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .......  ....+||++|+|||++
T Consensus       168 ~~~~~~~--~~~~~gt~~y~aPE~~  190 (361)
T 2yab_A          168 EIEDGVE--FKNIFGTPEFVAPEIV  190 (361)
T ss_dssp             ECCTTCC--CCCCCSCGGGCCHHHH
T ss_pred             EcCCCCc--cccCCCCccEECchHH
Confidence            7654322  2334699999999973

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.82  E-value=4.6e-20  Score=193.30  Aligned_cols=150  Identities=25%  Similarity=0.385  Sum_probs=119.0

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .++|+..+.||+|+||.||+|+.+++..||||++..... ..+++.+|++++++++||||+++++++......++...+.
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence            357888899999999999999988888999999975432 3467899999999999999999999998776544432222


Q ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          754 T-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       754 ~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .           ...+++.+...++.++++|++|||   +.+|+||||||+||+          |||+++..........
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  162 (268)
T 3sxs_A           86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSS  162 (268)
T ss_dssp             TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEEC
T ss_pred             CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcc
Confidence            1           124677888899999999999996   568999999999998          9999987655433322


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....+|+.|+|||++
T Consensus       163 ~~~~~~~~y~aPE~~  177 (268)
T 3sxs_A          163 VGTKFPVKWSAPEVF  177 (268)
T ss_dssp             CSCCCCGGGCCHHHH
T ss_pred             cCCCcCcccCCHHHH
Confidence            333467889999963

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.82  E-value=3.3e-20  Score=200.16  Aligned_cols=150  Identities=23%  Similarity=0.333  Sum_probs=116.9

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+++++.++|||||++++++.+++..++...+
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   86 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence            57889999999999999999865 789999999865432 2346789999999999999999999999887755442222


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-c
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-I  811 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-~  811 (827)
                      .          ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++.+...... .
T Consensus        87 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  163 (323)
T 3tki_A           87 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERL  163 (323)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECC
T ss_pred             CCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccc
Confidence            1          1235778889999999999999996   578999999999998          99999876433221 1


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||+.|+|||++
T Consensus       164 ~~~~~gt~~y~aPE~~  179 (323)
T 3tki_A          164 LNKMCGTLPYVAPELL  179 (323)
T ss_dssp             BCSCCSCGGGSCHHHH
T ss_pred             cCCCccCcCccCcHHh
Confidence            2334699999999973

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.82  E-value=5e-20  Score=206.93  Aligned_cols=151  Identities=25%  Similarity=0.310  Sum_probs=118.8

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ..++|+..+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|++++++++|||||++++++.+++..++.
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv   88 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI   88 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence            356799999999999999999986 478999999986543  33456799999999999999999999999887765543


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccC
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTG  806 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~  806 (827)
                      ..+..          ...+++.+...++.++++|++|||   +.+|+||||||+||+             |||+|+....
T Consensus        89 ~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~  165 (444)
T 3soa_A           89 FDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEG  165 (444)
T ss_dssp             ECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCT
T ss_pred             EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecC
Confidence            33222          234677788899999999999996   568999999999998             9999987654


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... ....+||++|||||++
T Consensus       166 ~~~~-~~~~~gt~~Y~APE~l  185 (444)
T 3soa_A          166 EQQA-WFGFAGTPGYLSPEVL  185 (444)
T ss_dssp             TCCB-CCCSCSCGGGCCHHHH
T ss_pred             CCce-eecccCCcccCCHHHh
Confidence            4322 2335699999999973

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.82  E-value=4e-20  Score=199.20  Aligned_cols=148  Identities=22%  Similarity=0.279  Sum_probs=118.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||+|++.... ...+.+.+|+++++.++|||||++++++.+.+..++...+
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            357888999999999999999865 68999999987543 3446789999999999999999999999887655443222


Q ss_pred             c-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCc
Q 047196          753 S-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~  809 (827)
                      .           ....+++.+...++.++++|++|||   +.+|+||||||+||+            |||+++.......
T Consensus        83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~  159 (321)
T 1tki_A           83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN  159 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCc
Confidence            1           1234778888999999999999996   568999999999998            9999987654332


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                        .....||++|+|||++
T Consensus       160 --~~~~~gt~~y~aPE~~  175 (321)
T 1tki_A          160 --FRLLFTAPEYYAPEVH  175 (321)
T ss_dssp             --EEEEESCGGGSCHHHH
T ss_pred             --cccccCChhhcCcHHh
Confidence              2234589999999963

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.81  E-value=1.4e-20  Score=207.23  Aligned_cols=150  Identities=25%  Similarity=0.493  Sum_probs=106.9

Q ss_pred             hcccccceEecCCceEEEEEEec----CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL-  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l-  748 (827)
                      .+|+..+.||+|+||.||+|+..    ++..||||++... .....++|.+|++++++++|||||++++++......++ 
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence            46888899999999999999864    5778999999754 34456789999999999999999999999987665444 


Q ss_pred             -eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +++..         ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus       125 ~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  201 (373)
T 2qol_A          125 TEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP  201 (373)
T ss_dssp             EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             EeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccCC
Confidence             33321         1235778889999999999999996   568999999999998          999998775443


Q ss_pred             ccccc--cceecccccccccC
Q 047196          809 SMIQT--ETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~--~~~gt~~Y~APE~l  827 (827)
                      .....  ...+|++|+|||++
T Consensus       202 ~~~~~~~~~~~~~~y~aPE~~  222 (373)
T 2qol_A          202 EAAYTTRGGKIPIRWTSPEAI  222 (373)
T ss_dssp             ------------CTTSCHHHH
T ss_pred             ccceeccCCCcCCCccChhhh
Confidence            22111  12257889999963

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.81  E-value=6.6e-20  Score=199.48  Aligned_cols=149  Identities=24%  Similarity=0.238  Sum_probs=117.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|+..+.||+|+||.||+|+.+ +|+.||||++...   .....+.+.+|+++++++ +|||||++++++......++.
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            57888999999999999999875 6899999999753   233456788999999998 899999999999887655543


Q ss_pred             eeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+...          ..+++.....++.+++.||+|||   +.+|+||||||+||+          |||+|+.......
T Consensus        89 ~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~  165 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD  165 (345)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTC
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccCCCC
Confidence            333221          34667778889999999999996   568999999999998          9999986432222


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . ....+||+.|+|||++
T Consensus       166 ~-~~~~~gt~~y~aPE~~  182 (345)
T 3a8x_A          166 T-TSTFCGTPNYIAPEIL  182 (345)
T ss_dssp             C-BCCCCSCGGGCCHHHH
T ss_pred             c-ccccCCCccccCcccc
Confidence            1 2335699999999973

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.81  E-value=3.6e-20  Score=200.50  Aligned_cols=148  Identities=22%  Similarity=0.317  Sum_probs=118.2

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+. .+|+.||||++.....   ...+.+.+|+++++.++|||||++++++..+...++..
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5788899999999999999986 5789999999864321   12357899999999999999999999998877554432


Q ss_pred             eccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          751 LHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       751 l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .+..         ...+++.+...++.+++.|++|||   +.+|+||||||+||+          |||+++.......  
T Consensus        89 E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~--  163 (336)
T 3h4j_B           89 EYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF--  163 (336)
T ss_dssp             CCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT--
T ss_pred             ECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc--
Confidence            2221         235677888899999999999996   457999999999998          9999987654322  


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||+.|+|||++
T Consensus       164 ~~~~~gt~~y~aPE~~  179 (336)
T 3h4j_B          164 LKTSCGSPNYAAPEVI  179 (336)
T ss_dssp             TCCCTTSTTTSCGGGS
T ss_pred             cccccCCcCcCCHHHH
Confidence            2334699999999975

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.81  E-value=3.2e-20  Score=202.25  Aligned_cols=144  Identities=27%  Similarity=0.365  Sum_probs=116.5

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--  748 (827)
                      +.|...+.||+|+||.||+|+. .+|+.||||++....   ....+++.+|++++++++|||||++++++..++..++  
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            4588889999999999999986 578999999986432   3345679999999999999999999999987765444  


Q ss_pred             eeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          749 DCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       749 ~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ++...        ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++.....   
T Consensus       134 e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~---  207 (348)
T 1u5q_A          134 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA---  207 (348)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB---
T ss_pred             ecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC---
Confidence            32211        1345778888999999999999996   468999999999998          99999765432   


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                        ...+||++|+|||+
T Consensus       208 --~~~~gt~~y~aPE~  221 (348)
T 1u5q_A          208 --NSFVGTPYWMAPEV  221 (348)
T ss_dssp             --CCCCSCGGGCCHHH
T ss_pred             --CcccCCcceeCHhh
Confidence              23458999999996

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=1.3e-19  Score=185.23  Aligned_cols=162  Identities=22%  Similarity=0.245  Sum_probs=114.8

Q ss_pred             CCCCCCcccceecCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCC
Q 047196           81 SNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSG  160 (827)
Q Consensus        81 ~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g  160 (827)
                      .+.+.|+|.+|.|+..            ++. .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|+|++
T Consensus        14 ~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~   78 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA   78 (229)
T ss_dssp             CTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence            3567899999999753            222 4454443  789999999999998889899999999999999999864


Q ss_pred             ccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCc
Q 047196          161 SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEIS  240 (827)
Q Consensus       161 ~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  240 (827)
                      ..+..+..                         +++|++|+|++|.+++..+..|..+++|++|+|++|+++ .+|..+.
T Consensus        79 i~~~~~~~-------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  132 (229)
T 3e6j_A           79 LPVGVFDS-------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE  132 (229)
T ss_dssp             CCTTTTTT-------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred             cChhhccc-------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence            43333333                         335555555555555555555667777777777777776 5666677


Q ss_pred             CCccccEEEcccccccccccccccCcCCCcEEEeecccCcccC
Q 047196          241 NLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVV  283 (827)
Q Consensus       241 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  283 (827)
                      ++++|++|+|++|++++..+..+..+++|++|+|++|.+++..
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            7777777777777777655566777777777777777776544

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.81  E-value=6.8e-20  Score=196.35  Aligned_cols=151  Identities=29%  Similarity=0.470  Sum_probs=108.2

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      .++|+..+.||+|+||.||+|+. +|+.||||++....  ....++|.+|++++++++|||||++++++......++  +
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  114 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE  114 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred             hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence            45788889999999999999987 57899999986543  3445789999999999999999999999987664443  3


Q ss_pred             eeccC--------CC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          750 CLHST--------NC---SLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       750 ~l~~~--------~~---~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ++...        ..   .+++..+..++.++++||+|||. +.++|+||||||+||+          |||+++......
T Consensus       115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~-~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~  193 (309)
T 3p86_A          115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTF  193 (309)
T ss_dssp             CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHT-SSSCCCCTTCCGGGEEECTTCCEEECCCC---------
T ss_pred             cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccc
Confidence            33221        11   26777888999999999999963 2233999999999998          999998654332


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      . ......||+.|+|||++
T Consensus       194 ~-~~~~~~gt~~y~aPE~~  211 (309)
T 3p86_A          194 L-SSKSAAGTPEWMAPEVL  211 (309)
T ss_dssp             ---------CCTTSCHHHH
T ss_pred             c-ccccCCCCccccChhhh
Confidence            2 12234589999999963

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.81  E-value=7.1e-20  Score=196.83  Aligned_cols=146  Identities=24%  Similarity=0.294  Sum_probs=117.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||+||+|+.. +|+.||||++.....   ...+.+.+|+.+++.++|||||++++++.+....++..
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence            57888999999999999999865 689999999965422   23467889999999999999999999998876555433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+++.....++.+++.||+|||   +.+|+||||||+||+          |||+++......  
T Consensus        86 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~--  160 (318)
T 1fot_A           86 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT--  160 (318)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB--
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCcc--
Confidence            3222          234667777889999999999995   678999999999998          999998754321  


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ...+||+.|+|||++
T Consensus       161 --~~~~gt~~y~aPE~~  175 (318)
T 1fot_A          161 --YTLCGTPDYIAPEVV  175 (318)
T ss_dssp             --CCCCSCTTTCCHHHH
T ss_pred             --ccccCCccccCHhHh
Confidence              234699999999963

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.81  E-value=1.9e-20  Score=199.20  Aligned_cols=150  Identities=27%  Similarity=0.446  Sum_probs=113.9

Q ss_pred             hcccccceEecCCceEEEEEEe-----cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC----c
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED----F  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~----~  745 (827)
                      ++|+..+.||+|+||.||+|++     .+|+.||||++........+.|.+|++++++++|||||++++++...+    +
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK   89 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence            5788889999999999999984     258899999998766666788999999999999999999999986532    2


Q ss_pred             eeeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          746 KALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       746 ~~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+++++..         ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++....
T Consensus        90 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~  166 (295)
T 3ugc_A           90 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ  166 (295)
T ss_dssp             EEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC----
T ss_pred             EEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCcccccccC
Confidence            33343322         1234778888999999999999996   568999999999998          9999987754


Q ss_pred             CCccc--cccceecccccccccC
Q 047196          807 DRSMI--QTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~--~~~~~gt~~Y~APE~l  827 (827)
                      .....  .....+|+.|+|||++
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~  189 (295)
T 3ugc_A          167 DKEFFKVKEPGESPIFWYAPESL  189 (295)
T ss_dssp             ---------CTTCGGGGCCHHHH
T ss_pred             CcceeeeccCCCCccceeCcHHh
Confidence            33221  1223378889999963

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.81  E-value=8.1e-20  Score=197.39  Aligned_cols=149  Identities=23%  Similarity=0.359  Sum_probs=118.3

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchH------HHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAM------ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~------~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      .+.|...+.||+|+||.||+|+.. +|+.||||++......      ..+.+.+|++++++++|||||++++++......
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   89 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   89 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            356888999999999999999865 6899999998653221      356799999999999999999999999887655


Q ss_pred             eeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eecccc
Q 047196          747 ALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGR  802 (827)
Q Consensus       747 ~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~  802 (827)
                      ++...+..          ...+++.+...++.++++||+|||   +.+|+||||||+||+              |||+++
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  166 (326)
T 2y0a_A           90 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  166 (326)
T ss_dssp             EEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence            44332221          234677888999999999999996   568999999999997              899998


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .......  .....||+.|+|||++
T Consensus       167 ~~~~~~~--~~~~~gt~~y~aPE~~  189 (326)
T 2y0a_A          167 KIDFGNE--FKNIFGTPEFVAPEIV  189 (326)
T ss_dssp             ECCTTSC--CCCCCSCTTTCCHHHH
T ss_pred             ECCCCCc--cccccCCcCcCCceee
Confidence            7643322  1234599999999963

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.81  E-value=5.8e-20  Score=199.63  Aligned_cols=151  Identities=20%  Similarity=0.270  Sum_probs=118.0

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCcee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~  747 (827)
                      ..++|...++||+|+||.||+|+.+ +|+.||||++....   ....+.+.+|.++++++ +|||||++++++...+..+
T Consensus        15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~   94 (345)
T 1xjd_A           15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF   94 (345)
T ss_dssp             -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence            4578999999999999999999975 68999999997542   12345678899999987 9999999999998877655


Q ss_pred             eeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          748 LDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       748 l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +...+...          ..+++.....++.+++.||+|||   +.+|+||||||+||+          |||+|+.....
T Consensus        95 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  171 (345)
T 1xjd_A           95 FVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLG  171 (345)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccC
Confidence            43333221          34677778889999999999996   568999999999998          99999865332


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ... ....+||+.|+|||++
T Consensus       172 ~~~-~~~~~gt~~y~aPE~~  190 (345)
T 1xjd_A          172 DAK-TNTFCGTPDYIAPEIL  190 (345)
T ss_dssp             TCC-BCCCCSCGGGCCHHHH
T ss_pred             CCc-ccCCCCCcccCChhhh
Confidence            221 2335699999999973

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.81  E-value=7.4e-20  Score=205.63  Aligned_cols=150  Identities=26%  Similarity=0.368  Sum_probs=115.0

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-----c
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-----F  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-----~  745 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||||++...  .....+++.+|++++++++|+|||++++++....     .
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            467999999999999999999864 6889999999653  2344578999999999999999999999987653     1


Q ss_pred             ee--eeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          746 KA--LDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       746 ~~--l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+  +++...       ....+++.....++.++++||+|||   +.+|+||||||+|||          |||+|+....
T Consensus       105 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          105 LYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINS  181 (432)
T ss_dssp             EEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred             EEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence            22  232211       1235788888999999999999996   568999999999998          9999987643


Q ss_pred             CCcc---------------------ccccceeccccccccc
Q 047196          807 DRSM---------------------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~~---------------------~~~~~~gt~~Y~APE~  826 (827)
                      ....                     ..+..+||++|+|||+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  222 (432)
T 3n9x_A          182 EKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPEL  222 (432)
T ss_dssp             -----------------------------CCCCCTTCCHHH
T ss_pred             cccccccccccccccccccccchhccccCCCCCccccCHHH
Confidence            3211                     1234568999999996

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.81  E-value=5.5e-20  Score=198.75  Aligned_cols=150  Identities=26%  Similarity=0.330  Sum_probs=107.9

Q ss_pred             hhcccccceEecCCceEEEEEEe----cCCcEEEEEEEcccc----hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL----HDGIEVAIKVFHQNC----AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      .++|+..+.||+|+||.||+|+.    .+|+.||||++....    ......+.+|++++++++|||||++++++...+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            36788999999999999999986    468999999997542    2234568899999999999999999999988765


Q ss_pred             eeeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          746 KALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       746 ~~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      .++...+..          ...+.......++.+++.||+|||   +.+|+||||||+||+          |||+++...
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~  172 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESI  172 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC----
T ss_pred             EEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCcccccc
Confidence            554333322          234566777889999999999996   568999999999998          999998654


Q ss_pred             CCCccccccceecccccccccC
Q 047196          806 GDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..... ....+||+.|+|||++
T Consensus       173 ~~~~~-~~~~~gt~~y~aPE~~  193 (327)
T 3a62_A          173 HDGTV-THTFCGTIEYMAPEIL  193 (327)
T ss_dssp             -------CTTSSCCTTSCHHHH
T ss_pred             cCCcc-ccccCCCcCccCHhhC
Confidence            33221 2234589999999963

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.81  E-value=2.2e-20  Score=201.96  Aligned_cols=150  Identities=27%  Similarity=0.449  Sum_probs=109.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCc----EEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGI----EVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|+..++||+|+||.||+|++. +|+    .||+|++.... ....++|.+|++++++++|||||+++++|......++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v   94 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   94 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEE
Confidence            56888899999999999999853 444    36888875432 3345789999999999999999999999987764332


Q ss_pred             -eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +++.         .....+.+.....++.++++||+|||   +.+|+||||||+||+          |||+|+......
T Consensus        95 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~  171 (327)
T 3poz_A           95 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             EECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTC
T ss_pred             EEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccCCc
Confidence             2211         12345778888999999999999996   468999999999998          999998875443


Q ss_pred             ccc-cccceecccccccccC
Q 047196          809 SMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ... .....||++|+|||++
T Consensus       172 ~~~~~~~~~~t~~y~aPE~~  191 (327)
T 3poz_A          172 KEYHAEGGKVPIKWMALESI  191 (327)
T ss_dssp             C-------CCCGGGSCHHHH
T ss_pred             ccccccCCCccccccChHHh
Confidence            322 2223368899999963

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.81  E-value=2.9e-20  Score=204.33  Aligned_cols=150  Identities=23%  Similarity=0.405  Sum_probs=116.2

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|...+.||+|+||+||+|++.      +++.||||++... ......++.+|+.++++++|||||++++++......+
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  150 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF  150 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence            56888899999999999999843      4678999998654 3445567999999999999999999999998765444


Q ss_pred             e--eeeccC---------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------e
Q 047196          748 L--DCLHST---------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------D  797 (827)
Q Consensus       748 l--~~l~~~---------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------D  797 (827)
                      +  +++...               ...+.+.+...++.++++||+|||   +.+|+||||||+|||             |
T Consensus       151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~D  227 (367)
T 3l9p_A          151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGD  227 (367)
T ss_dssp             EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred             EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEECC
Confidence            3  332210               134778888999999999999996   568999999999998             9


Q ss_pred             ecccccccCCCcc-ccccceecccccccccC
Q 047196          798 FGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       798 FGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                      ||+|+........ ......||+.|+|||++
T Consensus       228 FG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  258 (367)
T 3l9p_A          228 FGMARDIYRAGYYRKGGCAMLPVKWMPPEAF  258 (367)
T ss_dssp             CHHHHHHHHHSSCTTCCGGGSCGGGCCHHHH
T ss_pred             CccccccccccccccCCCcCCcccEECHHHh
Confidence            9999865332221 12234479999999963

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.81  E-value=5.9e-20  Score=203.58  Aligned_cols=152  Identities=25%  Similarity=0.421  Sum_probs=108.5

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCC----
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIR-HRNHVKRISSCSNED----  744 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~----  744 (827)
                      ..++|+..+.||+|+||.||+|+. .+|+.||||++...  .....+++.+|+.++++++ |||||++++++..++    
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            456899999999999999999986 46899999998543  2345567889999999998 999999999987544    


Q ss_pred             ceeeeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          745 FKALDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       745 ~~~l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      +.+++++..      ....+++.....++.++++||+|||   +.+|+||||||+|||          |||+|+.+....
T Consensus        87 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  163 (388)
T 3oz6_A           87 YLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIR  163 (388)
T ss_dssp             EEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCC
T ss_pred             EEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCcccccccccc
Confidence            222333321      1235677778889999999999996   568999999999998          999998763311


Q ss_pred             --------------------ccccccceecccccccccC
Q 047196          809 --------------------SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 --------------------~~~~~~~~gt~~Y~APE~l  827 (827)
                                          ....+..+||++|+|||++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  202 (388)
T 3oz6_A          164 RVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEIL  202 (388)
T ss_dssp             CCCCCGGGCCC---------------CCCGGGGCCHHHH
T ss_pred             cccccccccccccccccccccccccCCcccCCcCCHHHh
Confidence                                1112334699999999963

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.81  E-value=1.3e-19  Score=193.34  Aligned_cols=150  Identities=27%  Similarity=0.444  Sum_probs=113.9

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHh--cCCCCceEEEeeeecCC------c
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKN--IRHRNHVKRISSCSNED------F  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~--l~H~niv~~~~~~~~~~------~  745 (827)
                      .++|...+.||+|+||.||+|+. +|+.||||++....   .+.+.+|.+++..  ++|||||++++++....      +
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD---EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc---chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence            35788899999999999999987 58899999986542   3456677777777  79999999999875431      1


Q ss_pred             eeeeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEccCCCccee----------eeccccc
Q 047196          746 KALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFS-----HSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       746 ~~l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~-----h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      .++++...       ....+++.....++.++++||+|||..     ++++|+||||||+||+          |||+|+.
T Consensus        83 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~  162 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVM  162 (301)
T ss_dssp             EEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeee
Confidence            22232221       124578888999999999999999832     3889999999999998          9999987


Q ss_pred             ccCCCccc---cccceecccccccccC
Q 047196          804 LTGDRSMI---QTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~---~~~~~gt~~Y~APE~l  827 (827)
                      ........   .....||++|+|||++
T Consensus       163 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  189 (301)
T 3q4u_A          163 HSQSTNQLDVGNNPRVGTKRYMAPEVL  189 (301)
T ss_dssp             EETTTTEEECCCCCCCCCGGGCCHHHH
T ss_pred             cccccccccccccccccccceeChhhh
Confidence            65443321   1223689999999963

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.81  E-value=3.8e-20  Score=202.83  Aligned_cols=157  Identities=21%  Similarity=0.359  Sum_probs=118.7

Q ss_pred             hHHHHHhhcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEee
Q 047196          668 QDLFRATEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISS  739 (827)
Q Consensus       668 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~  739 (827)
                      .++....++|...+.||+|+||.||+|++      .+++.||||++.... ....+.+.+|+++++++ +|||||+++++
T Consensus        15 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~   94 (359)
T 3vhe_A           15 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA   94 (359)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeee
Confidence            34444567899999999999999999973      246889999997643 34457799999999999 78999999999


Q ss_pred             eecCCc---eeeeeecc---------C-----------------------------------------------------
Q 047196          740 CSNEDF---KALDCLHS---------T-----------------------------------------------------  754 (827)
Q Consensus       740 ~~~~~~---~~l~~l~~---------~-----------------------------------------------------  754 (827)
                      |...+.   .++++...         .                                                     
T Consensus        95 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (359)
T 3vhe_A           95 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLS  174 (359)
T ss_dssp             ECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------
T ss_pred             eecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccc
Confidence            877543   22233211         0                                                     


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-c
Q 047196          755 ------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-I  811 (827)
Q Consensus       755 ------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-~  811 (827)
                                  ...+++.....++.++++||+|||   +.+|+||||||+||+          |||+++........ .
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  251 (359)
T 3vhe_A          175 DVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVR  251 (359)
T ss_dssp             ---------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEE
T ss_pred             hhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchh
Confidence                        011677788899999999999996   568999999999998          99999876443322 2


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....||++|+|||++
T Consensus       252 ~~~~~~t~~y~aPE~~  267 (359)
T 3vhe_A          252 KGDARLPLKWMAPETI  267 (359)
T ss_dssp             C--CEECGGGCCHHHH
T ss_pred             ccccCCCceeEChhhh
Confidence            2334589999999963

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.80  E-value=6.8e-20  Score=199.36  Aligned_cols=151  Identities=25%  Similarity=0.363  Sum_probs=116.6

Q ss_pred             HhhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~  745 (827)
                      ..++|...+.||+|+||.||+|+..      +++.||||++.... ....+.|.+|++++++++|||||++++++...+.
T Consensus        45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  124 (343)
T 1luf_A           45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP  124 (343)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence            3467888999999999999999874      34889999997543 3446789999999999999999999999987665


Q ss_pred             eeeeeeccCC----------------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCC
Q 047196          746 KALDCLHSTN----------------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLK  791 (827)
Q Consensus       746 ~~l~~l~~~~----------------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK  791 (827)
                      .++...+...                                  ..+++.+...++.++++||+|||   +.+|+|||||
T Consensus       125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlk  201 (343)
T 1luf_A          125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLA  201 (343)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            4432222111                                  34677788899999999999996   5689999999


Q ss_pred             Cccee----------eecccccccCCCcc-ccccceeccccccccc
Q 047196          792 PKNVF----------DFGIGRLLTGDRSM-IQTETLVTIGYMAPGL  826 (827)
Q Consensus       792 ~~NIl----------DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~  826 (827)
                      |+||+          |||+++........ ......+|++|+|||+
T Consensus       202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  247 (343)
T 1luf_A          202 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPES  247 (343)
T ss_dssp             GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHH
T ss_pred             cceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhh
Confidence            99998          99999876433211 1222347999999996

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.80  E-value=7.9e-20  Score=195.72  Aligned_cols=146  Identities=25%  Similarity=0.415  Sum_probs=112.0

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      ++|+..+.||+|+||.||+|+.. ++.||||++...  ...+.|.+|++++++++|||||++++++.+..+.++++....
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~   84 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGG   84 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTC
T ss_pred             hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCC
Confidence            56888899999999999999875 688999998643  345679999999999999999999999886655555554321


Q ss_pred             --------C---CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCcccc
Q 047196          755 --------N---CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       755 --------~---~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~~~  812 (827)
                              .   ....+.....++.++++|++|||..|.++|+||||||+||+           |||+++......    
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~----  160 (307)
T 2eva_A           85 SLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHM----  160 (307)
T ss_dssp             BHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------
T ss_pred             CHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccccc----
Confidence                    1   12567778899999999999999877789999999999998           999887553221    


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||++|+|||++
T Consensus       161 ~~~~gt~~y~aPE~~  175 (307)
T 2eva_A          161 TNNKGSAAWMAPEVF  175 (307)
T ss_dssp             ----CCTTSSCHHHH
T ss_pred             ccCCCCCceEChhhh
Confidence            223589999999963

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=195.33  Aligned_cols=147  Identities=25%  Similarity=0.403  Sum_probs=116.4

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--c--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--F--KAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~--~~l  748 (827)
                      ++|...++||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++....  .  .++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            56888999999999999999875 58999999997543 233567889999999999999999999987654  2  233


Q ss_pred             eeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eeccccc
Q 047196          749 DCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRL  803 (827)
Q Consensus       749 ~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~~  803 (827)
                      +++...           ...+++.....++.++++||+|||   +.+|+||||||+||+              |||+|+.
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~  165 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence            333211           112788888999999999999996   568999999999996              9999987


Q ss_pred             ccCCCccccccceeccccccccc
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      .......  ....||+.|+|||+
T Consensus       166 ~~~~~~~--~~~~gt~~y~aPE~  186 (319)
T 4euu_A          166 LEDDEQF--VSLYGTEEYLHPDM  186 (319)
T ss_dssp             CCTTCCB--CCCCSCGGGCCHHH
T ss_pred             cCCCCce--eecccCCCccCHHH
Confidence            6544322  23458999999996

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.80  E-value=2.3e-20  Score=205.97  Aligned_cols=151  Identities=28%  Similarity=0.437  Sum_probs=117.0

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      .++|...+.||+|+||.||+|+.. +++.||||++.... ....++|.+|++++++++|||||+++++|...+..++  +
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  192 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME  192 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence            457888899999999999999976 68999999987542 3345678999999999999999999999987664443  3


Q ss_pred             eeccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          750 CLHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       750 ~l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      ++...         ...+++.....++.++++||+|||   +.+|+||||||+|||          |||+++........
T Consensus       193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~  269 (377)
T 3cbl_A          193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYA  269 (377)
T ss_dssp             CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEE
T ss_pred             cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCcee
Confidence            33211         224677788899999999999996   568999999999998          99999865432211


Q ss_pred             cc-ccceecccccccccC
Q 047196          811 IQ-TETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~-~~~~gt~~Y~APE~l  827 (827)
                      .. ....+++.|+|||++
T Consensus       270 ~~~~~~~~~~~y~aPE~~  287 (377)
T 3cbl_A          270 ASGGLRQVPVKWTAPEAL  287 (377)
T ss_dssp             CCSSCCEEEGGGSCHHHH
T ss_pred             ecCCCCCCCcCcCCHhHh
Confidence            11 112368899999963

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.80  E-value=6.2e-20  Score=197.50  Aligned_cols=150  Identities=25%  Similarity=0.385  Sum_probs=104.3

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++..++..++...
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            457888999999999999999864 68999999986543 2234678899999999999999999999987765544322


Q ss_pred             ccC---------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          752 HST---------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       752 ~~~---------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      +..               ...+.+.....++.|+++||+|||   +.+|+||||||+||+          |||+++....
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  160 (317)
T 2pmi_A           84 FMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGI  160 (317)
T ss_dssp             CCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETTS
T ss_pred             ecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecCC
Confidence            211               123667777889999999999996   568999999999998          9999987643


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... ....+||+.|+|||++
T Consensus       161 ~~~~-~~~~~~t~~y~aPE~~  180 (317)
T 2pmi_A          161 PVNT-FSSEVVTLWYRAPDVL  180 (317)
T ss_dssp             CCCC-CCCCCSCCTTCCHHHH
T ss_pred             Cccc-CCCCcccccccCchHh
Confidence            3221 2234589999999963

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.80  E-value=6.9e-20  Score=199.54  Aligned_cols=156  Identities=26%  Similarity=0.339  Sum_probs=116.7

Q ss_pred             HHHHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-----hHHHHHHHHHHHHHHhcCCCCceEEEeeeec
Q 047196          669 DLFRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-----AMALKSFEAECEVMKNIRHRNHVKRISSCSN  742 (827)
Q Consensus       669 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~  742 (827)
                      ++....++|...+.||+|+||.||+|+. .+++.||||++....     ....+.+.+|++++++++|||||++++++.+
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   99 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED   99 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence            4556678899999999999999999986 468899999986432     2345789999999999999999999999988


Q ss_pred             CCceeeeeeccCCCC--------------------------------------------------CCHHHHHHHHHHHHH
Q 047196          743 EDFKALDCLHSTNCS--------------------------------------------------LNIFDKLNIMIDVAS  772 (827)
Q Consensus       743 ~~~~~l~~l~~~~~~--------------------------------------------------l~~~~~~~i~~~ia~  772 (827)
                      .+..++...+...+.                                                  +.+.....++.++++
T Consensus       100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~  179 (345)
T 3hko_A          100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS  179 (345)
T ss_dssp             SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence            775544322221111                                                  123345679999999


Q ss_pred             HHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCcc---ccccceecccccccccC
Q 047196          773 ALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRSM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       773 ~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~~---~~~~~~gt~~Y~APE~l  827 (827)
                      ||+|||   +.+|+||||||+||+            |||+++.+......   ......||+.|+|||++
T Consensus       180 ~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  246 (345)
T 3hko_A          180 ALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVL  246 (345)
T ss_dssp             HHHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHH
T ss_pred             HHHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhh
Confidence            999996   568999999999998            99999876432211   12334589999999963

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.80  E-value=1.1e-19  Score=191.37  Aligned_cols=148  Identities=28%  Similarity=0.369  Sum_probs=119.2

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .++|...+.||+|+||.||+|+.. ++..||+|++........+.+.+|++++++++||||+++++++......++...+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL   87 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence            457888999999999999999865 5789999999765444567899999999999999999999999887755443332


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCCc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~~  809 (827)
                      ..          ...+++.+...++.++++|++|||   +.+|+||||||+||+             |||+++.......
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~  164 (277)
T 3f3z_A           88 CTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM  164 (277)
T ss_dssp             CCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSC
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccc
Confidence            22          134677788899999999999996   568999999999997             9999987654332


Q ss_pred             cccccceeccccccccc
Q 047196          810 MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~  826 (827)
                        .....||++|+|||+
T Consensus       165 --~~~~~~t~~y~aPE~  179 (277)
T 3f3z_A          165 --MRTKVGTPYYVSPQV  179 (277)
T ss_dssp             --BCCCCSCTTTCCHHH
T ss_pred             --hhccCCCCCccChHH
Confidence              223458999999996

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.80  E-value=9.9e-20  Score=208.82  Aligned_cols=149  Identities=21%  Similarity=0.320  Sum_probs=118.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|...++||+|+||.||+|+.. +|+.||||++....   ....+.+.+|++++++++|||||++++++...+..++.
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            356888999999999999999875 69999999996532   12345688999999999999999999999887655443


Q ss_pred             eeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          750 CLHST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       750 ~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      ..+..            ...+++.....++.+++.||+|||   +.+|+||||||+|||          |||+|+.....
T Consensus       263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~  339 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG  339 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence            22221            123778888899999999999996   468999999999998          99999876543


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..  ....+||++|||||++
T Consensus       340 ~~--~~~~~GT~~Y~APEvl  357 (576)
T 2acx_A          340 QT--IKGRVGTVGYMAPEVV  357 (576)
T ss_dssp             CC--EECCCSCGGGCCHHHH
T ss_pred             cc--ccccCCCccccCHHHH
Confidence            32  1334699999999974

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.80  E-value=3.9e-20  Score=195.55  Aligned_cols=149  Identities=24%  Similarity=0.433  Sum_probs=115.1

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCL  751 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l  751 (827)
                      .++|+..+.||+|+||.||+|+..++..||||++..... ..+++.+|++++++++|+||+++++++......++  ++.
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  101 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM  101 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence            457888899999999999999998888999999975432 24678999999999999999999999987665444  322


Q ss_pred             cc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          752 HS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       752 ~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..         ....+++.+...++.++++|++|||   +.+|+||||||+||+          |||+++..........
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  178 (283)
T 3gen_A          102 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSS  178 (283)
T ss_dssp             TTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHST
T ss_pred             CCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccccccc
Confidence            21         1245778888999999999999996   568999999999998          9999987643322222


Q ss_pred             ccceeccccccccc
Q 047196          813 TETLVTIGYMAPGL  826 (827)
Q Consensus       813 ~~~~gt~~Y~APE~  826 (827)
                      ....+|+.|+|||+
T Consensus       179 ~~~~~~~~y~aPE~  192 (283)
T 3gen_A          179 VGSKFPVRWSPPEV  192 (283)
T ss_dssp             TSTTSCGGGCCHHH
T ss_pred             cCCccCcccCCHHH
Confidence            22346889999996

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.80  E-value=7.6e-20  Score=193.17  Aligned_cols=151  Identities=25%  Similarity=0.396  Sum_probs=105.8

Q ss_pred             hhcccccceEecCCceEEEEEEec----CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-ee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-KA  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-~~  747 (827)
                      .++|+..+.||+|+||.||+|+..    .+..||||++... .....+.+.+|+.++++++|||||++++++.+... ..
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv   93 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWII   93 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEEE
Confidence            357888899999999999999864    2567999998653 33445789999999999999999999999865443 22


Q ss_pred             eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      +++...         ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus        94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  170 (281)
T 1mp8_A           94 MELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  170 (281)
T ss_dssp             EECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred             EecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCccc
Confidence            333221         1235788888999999999999996   568999999999998          999998765433


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ........+|+.|+|||++
T Consensus       171 ~~~~~~~~~~~~y~aPE~~  189 (281)
T 1mp8_A          171 YYKASKGKLPIKWMAPESI  189 (281)
T ss_dssp             --------CCGGGCCHHHH
T ss_pred             ccccccCCCcccccChhhc
Confidence            2222223468899999963

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.80  E-value=5.6e-20  Score=207.98  Aligned_cols=151  Identities=23%  Similarity=0.436  Sum_probs=116.6

Q ss_pred             HhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCL  751 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l  751 (827)
                      ..++|...+.||+|+||.||+|++.++..||||++.... ...++|.+|++++++++|||||++++++..+... +++++
T Consensus       186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~  264 (454)
T 1qcf_A          186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFM  264 (454)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCC
T ss_pred             chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeec
Confidence            346788889999999999999999888899999997543 3457899999999999999999999998754322 22332


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ...          ...+.+.+...++.++++||+|||   +.+|+||||||+|||          |||+|+.........
T Consensus       265 ~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~  341 (454)
T 1qcf_A          265 AKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA  341 (454)
T ss_dssp             TTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHT
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceec
Confidence            211          124566778889999999999996   567999999999998          999998764332222


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....+|+.|+|||++
T Consensus       342 ~~~~~~~~~y~aPE~~  357 (454)
T 1qcf_A          342 REGAKFPIKWTAPEAI  357 (454)
T ss_dssp             TCSSSSCGGGSCHHHH
T ss_pred             cCCCcccccccCHHHh
Confidence            2223468899999963

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.80  E-value=1.2e-19  Score=197.76  Aligned_cols=146  Identities=22%  Similarity=0.293  Sum_probs=117.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++.....   ...+.+.+|++++++++|||||++++++.+....++..
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            57888999999999999999865 689999999965421   23467889999999999999999999998877555433


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+...          ..++......++.+++.||+|||   +.+|+||||||+||+          |||+++......  
T Consensus       121 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~--  195 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT--  195 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB--
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCCc--
Confidence            33221          34667778889999999999996   568999999999998          999998764332  


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ...+||+.|+|||++
T Consensus       196 --~~~~gt~~y~aPE~~  210 (350)
T 1rdq_E          196 --WTLCGTPEALAPEII  210 (350)
T ss_dssp             --CCCEECGGGCCHHHH
T ss_pred             --ccccCCccccCHHHh
Confidence              234699999999963

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.80  E-value=7e-20  Score=209.29  Aligned_cols=150  Identities=29%  Similarity=0.519  Sum_probs=118.6

Q ss_pred             hhcccccceEecCCceEEEEEEecC-CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--ee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~  750 (827)
                      ..+|...+.||+|+||.||+|++.. +..||||++.... ...++|.+|++++++++|||||+++++|......++  ++
T Consensus       219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~  297 (495)
T 1opk_A          219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF  297 (495)
T ss_dssp             GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence            3568888999999999999999764 8899999997543 235679999999999999999999999987664443  33


Q ss_pred             ecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +..          ....+.+.....++.++++||+|||   +++|+||||||+|||          |||+++....+...
T Consensus       298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~  374 (495)
T 1opk_A          298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYT  374 (495)
T ss_dssp             CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEE
T ss_pred             cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCcee
Confidence            221          1234677888899999999999996   568999999999998          99999887544332


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      ......+|+.|+|||++
T Consensus       375 ~~~~~~~~~~y~aPE~~  391 (495)
T 1opk_A          375 AHAGAKFPIKWTAPESL  391 (495)
T ss_dssp             CCTTCCCCGGGCCHHHH
T ss_pred             ecCCCcCCcceeCHhHH
Confidence            22333468899999963

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.80  E-value=8e-20  Score=204.43  Aligned_cols=150  Identities=26%  Similarity=0.364  Sum_probs=110.9

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--------HHHHHHHHHHHHHHhcCCCCceEEEeeeecC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--------MALKSFEAECEVMKNIRHRNHVKRISSCSNE  743 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~  743 (827)
                      ..++|...+.||+|+||.||+|... +++.||||++.....        .....+.+|++++++++|||||++++++..+
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~  212 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE  212 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            4568999999999999999999864 689999999865321        1123588999999999999999999998665


Q ss_pred             Cce-eeeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eeccc
Q 047196          744 DFK-ALDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIG  801 (827)
Q Consensus       744 ~~~-~l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla  801 (827)
                      ... +++++..        ....+.+.....++.++++||+|||   +.+|+||||||+|||             |||+|
T Consensus       213 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a  289 (419)
T 3i6u_A          213 DYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHS  289 (419)
T ss_dssp             EEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCSSTT
T ss_pred             ceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeecccc
Confidence            432 2233321        1235678888999999999999996   467999999999998             99999


Q ss_pred             ccccCCCccccccceecccccccccC
Q 047196          802 RLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +.......  ....+||++|+|||++
T Consensus       290 ~~~~~~~~--~~~~~gt~~y~aPE~~  313 (419)
T 3i6u_A          290 KILGETSL--MRTLCGTPTYLAPEVL  313 (419)
T ss_dssp             TSCC-------------CTTCCTTTT
T ss_pred             eecCCCcc--ccccCCCCCccCceee
Confidence            87643322  2334599999999974

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.7e-19  Score=199.36  Aligned_cols=150  Identities=27%  Similarity=0.421  Sum_probs=116.8

Q ss_pred             hcccccceEecCCceEEEEEEec--------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH--------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      ++|...+.||+|+||.||+|+..        ++..||||++.... ....+++.+|+++++++ +|||||++++++...+
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  148 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG  148 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence            57888899999999999999852        23679999997543 44557899999999999 9999999999998766


Q ss_pred             ceee--eeeccC------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          745 FKAL--DCLHST------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       745 ~~~l--~~l~~~------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                      ..++  ++....                        ...+++.+...|+.++++||+|||   +.+|+||||||+||+  
T Consensus       149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~  225 (382)
T 3tt0_A          149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVT  225 (382)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEC
T ss_pred             ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEEc
Confidence            5443  332210                        123788889999999999999996   568999999999998  


Q ss_pred             --------eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                              |||+|+........ ......+|++|+|||++
T Consensus       226 ~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  265 (382)
T 3tt0_A          226 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL  265 (382)
T ss_dssp             TTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHH
T ss_pred             CCCcEEEcccCcccccccccccccccCCCCCcceeCHHHh
Confidence                    99999876543221 12223478999999963

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.80  E-value=3.3e-20  Score=201.21  Aligned_cols=150  Identities=26%  Similarity=0.361  Sum_probs=118.3

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch--------HHHHHHHHHHHHHHhcCCCCceEEEeeeecC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA--------MALKSFEAECEVMKNIRHRNHVKRISSCSNE  743 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--------~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~  743 (827)
                      ..++|...+.||+|+||.||+|+. .+|+.||||++.....        ...+.+.+|++++++++|||||++++++...
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            346789999999999999999985 4689999999865421        1234578899999999999999999999887


Q ss_pred             Cceeeeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          744 DFKALDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       744 ~~~~l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                      ...++...+.           ....+++.....|+.++++||+|||   +.+|+||||||+||+          |||+++
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~  178 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAA  178 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecccce
Confidence            7554433221           1235678888899999999999996   568999999999998          999998


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ........  ...+||++|+|||++
T Consensus       179 ~~~~~~~~--~~~~gt~~y~aPE~~  201 (335)
T 3dls_A          179 YLERGKLF--YTFCGTIEYCAPEVL  201 (335)
T ss_dssp             ECCTTCCB--CEECSCGGGCCHHHH
T ss_pred             ECCCCCce--eccCCCccccChhhh
Confidence            76543321  234589999999963

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.80  E-value=9.9e-20  Score=198.45  Aligned_cols=150  Identities=21%  Similarity=0.189  Sum_probs=117.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l  748 (827)
                      .++|+..++||+|+||+||+|+.+ +|+.||||++....   ....+.+.+|.++++.+ +||+|+++++++...+..++
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   98 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF   98 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence            467999999999999999999876 48899999997542   12345688999999988 79999999999988765554


Q ss_pred             eeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ...+...          ..+++.....++.+++.||+|||   +.+|+||||||+||+          |||+|+......
T Consensus        99 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  175 (353)
T 2i0e_A           99 VMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG  175 (353)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCC
Confidence            3333221          34667778889999999999996   568999999999998          999998643322


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .. ....+||+.|||||++
T Consensus       176 ~~-~~~~~gt~~y~aPE~~  193 (353)
T 2i0e_A          176 VT-TKTFCGTPDYIAPEII  193 (353)
T ss_dssp             CC-BCCCCSCGGGCCHHHH
T ss_pred             cc-cccccCCccccChhhh
Confidence            21 2335699999999973

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.80  E-value=1.8e-19  Score=203.67  Aligned_cols=148  Identities=24%  Similarity=0.393  Sum_probs=119.1

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++.....   ...+.+.+|+++++.++|||||++++++...+..++..
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            56888899999999999999875 799999999965422   23467899999999999999999999998876554432


Q ss_pred             ecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+.          ....+++.....++.|++.|++|||   +.+|+||||||+||+          |||+++....... 
T Consensus        96 E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~-  171 (476)
T 2y94_A           96 EYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF-  171 (476)
T ss_dssp             ECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC-
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhcccccc-
Confidence            222          1345778888999999999999995   678999999999998          9999987654322 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||+.|+|||++
T Consensus       172 -~~~~~gt~~y~aPE~~  187 (476)
T 2y94_A          172 -LRTSCGSPNYAAPEVI  187 (476)
T ss_dssp             -BCCCCSCSTTCCHHHH
T ss_pred             -ccccCCCcCeEChhhc
Confidence             2335699999999963

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.80  E-value=1e-21  Score=227.07  Aligned_cols=220  Identities=20%  Similarity=0.205  Sum_probs=132.3

Q ss_pred             cccceecCCCCCcEEEEEcCCCCCcc-------------------------ccCc---cccCCCCCCEEECCCCCCCccC
Q 047196           87 NWIGITCNVNSHRVTALNISSLNLQG-------------------------TIPP---QLGNLSSLTTLNLSHNKLSGDI  138 (827)
Q Consensus        87 ~W~gv~C~~~~~~v~~L~L~~~~l~g-------------------------~~~~---~l~~L~~L~~L~Ls~N~l~g~~  138 (827)
                      .|..+.|+....+|-.+++..-.+.-                         ..+.   .+..+++|+.|+|++|+++ .+
T Consensus       286 ~W~~~~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~L~~L~Ls~n~L~-~L  364 (567)
T 1dce_A          286 EWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL  364 (567)
T ss_dssp             CCBCTTSSCCSEEEEEEECCGGGTSTTSSEEEEEEEETTTTEEEEEEEETTCSEEEEECCSTTTTSSSCCCCHHHHH-HH
T ss_pred             eeccCCcccccceeEEeecCccccccccccceEEEeeccCCCCccccccCCCchhhhcccccCccceeccCChhhHH-hh
Confidence            68888887766777777775433321                         0011   2367899999999999997 88


Q ss_pred             ChhhhhccccceEEecCCC-------------CCCccccccCCCCCCcEEE-cCCCCCCCCcchhHhhccccccEEEeec
Q 047196          139 PPSIFTMHKLKFLDFSDNQ-------------LSGSLSSVTFNLSSVLDIR-LDSDKLSGELPVNICNYLHYLKVLFLAK  204 (827)
Q Consensus       139 p~~~~~l~~L~~LdLs~N~-------------l~g~~p~~~~~l~~L~~L~-L~~n~l~g~ip~~~~~~~~~L~~L~Ls~  204 (827)
                      |++++++++|+.||+++|.             +.+.+|..+.++++|+.|+ ++.|.+            ..|+.+.+++
T Consensus       365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~------------~~L~~l~l~~  432 (567)
T 1dce_A          365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL------------DDLRSKFLLE  432 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc------------chhhhhhhhc
Confidence            9999999999999998775             3444455555555555444 333221            1233344444


Q ss_pred             ccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCc
Q 047196          205 NMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVP  284 (827)
Q Consensus       205 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  284 (827)
                      |.++...+      ..|+.|+|++|.+++ +|. ++++++|+.|+|++|+|+ .+|..++.+++|++|+|++|++++ +|
T Consensus       433 n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp  502 (567)
T 1dce_A          433 NSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD  502 (567)
T ss_dssp             HHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred             ccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence            44443222      136667777777765 454 666777777777777776 566667777777777777777665 44


Q ss_pred             hhhhcCCCccEEEecCCcccccc-ChhhhcCCCCccEEeCcCCccccc
Q 047196          285 AAIFNMSTVKKIYLLDNSLLGSF-SLGIDLSLPNVERLNLGLNRFSGT  331 (827)
Q Consensus       285 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~  331 (827)
                       .+.++++|+.|++++|.+.+.. |..+. .+++|+.|+|++|.+++.
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGS
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCC
Confidence             4555555554444444444433 33332 344444444444444433

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.79  E-value=9e-20  Score=198.92  Aligned_cols=147  Identities=25%  Similarity=0.359  Sum_probs=102.7

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .+.|+..+.||+|+||.||+|+.. +++.||||++....  ..+.+.+|++++++++|||||++++++...+..++...+
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  129 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL  129 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence            467888999999999999999975 58899999987542  345688999999999999999999999887655443322


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCCc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~~  809 (827)
                      ..          ...+++.+...++.++++||+|||   +.+|+||||||+||+             |||+++.......
T Consensus       130 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~  206 (349)
T 2w4o_A          130 VTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL  206 (349)
T ss_dssp             CCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccc
Confidence            21          234677888999999999999996   568999999999998             8999887643321


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                        .....||++|+|||++
T Consensus       207 --~~~~~gt~~y~aPE~~  222 (349)
T 2w4o_A          207 --MKTVCGTPGYCAPEIL  222 (349)
T ss_dssp             --------CGGGSCHHHH
T ss_pred             --cccccCCCCccCHHHh
Confidence              1234589999999963

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.79  E-value=9.4e-20  Score=197.81  Aligned_cols=145  Identities=22%  Similarity=0.237  Sum_probs=109.1

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccc--------hHHHHHHHHHHHHHHhcC---------CCCceEE
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--------AMALKSFEAECEVMKNIR---------HRNHVKR  736 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~Ei~~l~~l~---------H~niv~~  736 (827)
                      .++|+..+.||+|+||.||+|+. +|+.||||++....        ....+.+.+|++++++++         |+|+|++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            35788899999999999999987 68999999997542        122467899999999996         8888888


Q ss_pred             Eeeeec------------------------------CCce--eeeeeccC-------CCCCCHHHHHHHHHHHHHHHHHH
Q 047196          737 ISSCSN------------------------------EDFK--ALDCLHST-------NCSLNIFDKLNIMIDVASALEYL  777 (827)
Q Consensus       737 ~~~~~~------------------------------~~~~--~l~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~L  777 (827)
                      .+.+..                              ....  ++++...+       ...+++.....|+.|++.||+||
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~l  177 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVA  177 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            876431                              2222  23333221       13467888899999999999999


Q ss_pred             HhcCCCCeEEccCCCccee------------------------------eecccccccCCCccccccceecccccccccC
Q 047196          778 HFSHSTPVIHCDLKPKNVF------------------------------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       778 h~~h~~~iiHrDlK~~NIl------------------------------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |  ++.+|+||||||+|||                              |||+|+....      ...+||+.|||||++
T Consensus       178 H--~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------~~~~gt~~y~aPE~~  249 (336)
T 2vuw_A          178 E--ASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------GIVVFCDVSMDEDLF  249 (336)
T ss_dssp             H--HHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------TEEECCCCTTCSGGG
T ss_pred             H--HhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------CcEEEeecccChhhh
Confidence            7  2567999999999987                              5677665432      224699999999975

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.79  E-value=9.8e-20  Score=199.54  Aligned_cols=148  Identities=23%  Similarity=0.263  Sum_probs=110.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||||++..... ..+.+.+|+.++++++|||||++++++......++...+
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   97 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY   97 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence            357888999999999999999875 789999999965432 235688999999999999999999999887755543333


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCcc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRSM  810 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~~  810 (827)
                      ..          ...+++.....++.++++||+|||   +.+|+||||||+||+            |||+|+....... 
T Consensus        98 ~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~-  173 (361)
T 3uc3_A           98 ASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQ-  173 (361)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC---------
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCC-
Confidence            22          234677788899999999999996   568999999999998            9999875432221 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||++|+|||++
T Consensus       174 -~~~~~gt~~y~aPE~~  189 (361)
T 3uc3_A          174 -PKSTVGTPAYIAPEVL  189 (361)
T ss_dssp             --------CTTSCHHHH
T ss_pred             -CCCCcCCCCcCChhhh
Confidence             1234599999999963

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.79  E-value=4e-20  Score=208.83  Aligned_cols=151  Identities=25%  Similarity=0.266  Sum_probs=109.0

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|+..+.||+|+||.||+|+. .+|+.||||++...   .....+.+.+|++++++++|||||++++++...+..++.
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            35788899999999999999986 46899999999653   223345788999999999999999999999887765543


Q ss_pred             eeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+...          ..+++.....++.++++||+|||.  .++|+||||||+|||          |||+|+.......
T Consensus       227 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~--~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  304 (446)
T 4ejn_A          227 MEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA  304 (446)
T ss_dssp             ECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC---
T ss_pred             EeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCc
Confidence            333222          345677788899999999999974  268999999999998          9999986543322


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . ....+||++|||||++
T Consensus       305 ~-~~~~~gt~~y~aPE~~  321 (446)
T 4ejn_A          305 T-MKTFCGTPEYLAPEVL  321 (446)
T ss_dssp             ---CCSSSCGGGCCHHHH
T ss_pred             c-cccccCCccccCHhhc
Confidence            2 2335699999999973

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.79  E-value=1.5e-19  Score=206.43  Aligned_cols=149  Identities=26%  Similarity=0.413  Sum_probs=117.8

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .++|...++||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|||||++++++......++..
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            467899999999999999999865 68999999986432  223467899999999999999999999998877555433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCC
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGD  807 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~  807 (827)
                      .+..          ...+++.....++.++++||.|||   +.+|+||||||+||+             |||+|+.....
T Consensus       101 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  177 (486)
T 3mwu_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN  177 (486)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC
T ss_pred             EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCC
Confidence            2222          134677788899999999999996   568999999999998             99999876543


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..  ....+||++|+|||++
T Consensus       178 ~~--~~~~~gt~~y~aPE~~  195 (486)
T 3mwu_A          178 TK--MKDRIGTAYYIAPEVL  195 (486)
T ss_dssp             ------CCTTGGGGCCGGGG
T ss_pred             Cc--cCCCcCCCCCCCHHHh
Confidence            32  2334599999999974

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.79  E-value=1.6e-19  Score=191.07  Aligned_cols=147  Identities=30%  Similarity=0.442  Sum_probs=113.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++......++...+
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            56888999999999999999864 68999999986543 22357799999999999999999999999877654443222


Q ss_pred             cC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eeccccccc
Q 047196          753 ST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLT  805 (827)
Q Consensus       753 ~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~  805 (827)
                      ..              ...+++.....++.++++||+|||   +.+|+||||||+||+             |||+++...
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~  178 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK  178 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence            21              134677788899999999999996   568999999999998             999997764


Q ss_pred             CCCccccccceeccccccccc
Q 047196          806 GDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ....  .....||+.|+|||+
T Consensus       179 ~~~~--~~~~~~t~~y~aPE~  197 (285)
T 3is5_A          179 SDEH--STNAAGTALYMAPEV  197 (285)
T ss_dssp             ----------CTTGGGCCHHH
T ss_pred             Cccc--CcCcccccCcCChHH
Confidence            4322  223458999999996

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.79  E-value=1.3e-19  Score=202.88  Aligned_cols=144  Identities=29%  Similarity=0.448  Sum_probs=111.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecC----C--ce-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNE----D--FK-  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~----~--~~-  746 (827)
                      .+|...++||+|+||.||+|+.. +|+.||||++.....    .+.+|++++++++|+|||++++++...    +  +. 
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            36888899999999999999975 689999999865422    235799999999999999999987542    1  11 


Q ss_pred             -eeeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eeccccc
Q 047196          747 -ALDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRL  803 (827)
Q Consensus       747 -~l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~  803 (827)
                       +++++..           ....+.+.....++.|+++||+|||   +.+|+||||||+|||           |||+|+.
T Consensus       130 lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~  206 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  206 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             eehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhhh
Confidence             2222211           1245677778899999999999996   678999999999998           9999987


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +.....  ....+||++|+|||++
T Consensus       207 ~~~~~~--~~~~~~t~~y~aPE~~  228 (420)
T 1j1b_A          207 LVRGEP--NVSYICSRYYRAPELI  228 (420)
T ss_dssp             CCTTCC--CCSCCSCTTSCCHHHH
T ss_pred             cccCCC--ceeeeeCCCcCCHHHH
Confidence            644332  2335689999999963

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.79  E-value=6.7e-20  Score=196.67  Aligned_cols=150  Identities=22%  Similarity=0.407  Sum_probs=110.8

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++...   .....+.+.+|++++++++|||||++++++....      
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~   91 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   91 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence            5788899999999999999986 57899999999754   2334567999999999999999999999986543      


Q ss_pred             ceeeeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 FKALDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 ~~~l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      +.+++++..        ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++....
T Consensus        92 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  168 (311)
T 3ork_A           92 YIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD  168 (311)
T ss_dssp             EEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC-----
T ss_pred             EEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccc
Confidence            334444322        1235778888999999999999996   568999999999998          9999987654


Q ss_pred             CCcc--ccccceecccccccccC
Q 047196          807 DRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ....  .....+||++|+|||++
T Consensus       169 ~~~~~~~~~~~~gt~~y~aPE~~  191 (311)
T 3ork_A          169 SGNSVTQTAAVIGTAQYLSPEQA  191 (311)
T ss_dssp             -------------CCTTCCHHHH
T ss_pred             cccccccccccCcCcccCCHHHh
Confidence            3221  11224589999999963

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.79  E-value=2.5e-19  Score=198.59  Aligned_cols=151  Identities=16%  Similarity=0.211  Sum_probs=118.1

Q ss_pred             hhcccccceEecC--CceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          674 TEKFSKENLIGVG--SFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       674 ~~~~~~~~~iG~G--~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .++|+..++||+|  +||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|||||++++++...+..++
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            4679999999999  99999999975 69999999996542  3445778999999999999999999999988775544


Q ss_pred             eeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          749 DCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       749 ~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      ...+..            ...+++.....++.++++||+|||   +.+|+||||||+|||          |||.+.....
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~  180 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMIS  180 (389)
T ss_dssp             EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECEE
T ss_pred             EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeecc
Confidence            322221            144677888899999999999996   568999999999998          8998865432


Q ss_pred             CCcc------ccccceecccccccccC
Q 047196          807 DRSM------IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~------~~~~~~gt~~Y~APE~l  827 (827)
                      ....      .....+||+.|+|||++
T Consensus       181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (389)
T 3gni_B          181 HGQRQRVVHDFPKYSVKVLPWLSPEVL  207 (389)
T ss_dssp             TTEECSCBCCCCTTCTTTGGGSCHHHH
T ss_pred             ccccccccccccccccccccccCHHHH
Confidence            2111      11223589999999973

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.79  E-value=3.5e-19  Score=188.22  Aligned_cols=148  Identities=24%  Similarity=0.406  Sum_probs=117.9

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++...  .....+.+.+|++++++++||||+++++++..+...++..
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            467888999999999999999865 6899999998653  2344577899999999999999999999998877554433


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCC
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGD  807 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~  807 (827)
                      .+...          ..+++.....++.+++.|++|||   +.+|+||||||+||+             |||++......
T Consensus        85 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~  161 (284)
T 3kk8_A           85 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS  161 (284)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSS
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccC
Confidence            32221          23667778899999999999996   568999999999998             89998766433


Q ss_pred             Cccccccceeccccccccc
Q 047196          808 RSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~  826 (827)
                      ..  .....||++|+|||+
T Consensus       162 ~~--~~~~~~~~~y~aPE~  178 (284)
T 3kk8_A          162 EA--WHGFAGTPGYLSPEV  178 (284)
T ss_dssp             CB--CCCSCSCGGGCCHHH
T ss_pred             cc--ccCCCCCcCCcCchh
Confidence            22  123458999999996

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.79  E-value=2.1e-19  Score=195.63  Aligned_cols=151  Identities=25%  Similarity=0.411  Sum_probs=114.7

Q ss_pred             HhhcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      ..++|...+.||+|+||.||+|+.      .+++.||||++.... ....+.+.+|+++++++ +||||+++++++...+
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  122 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  122 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence            346788899999999999999985      245789999997542 33456899999999999 8999999999998766


Q ss_pred             ceeeeeeccCC---------------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCC
Q 047196          745 FKALDCLHSTN---------------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLK  791 (827)
Q Consensus       745 ~~~l~~l~~~~---------------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK  791 (827)
                      ..++...+...                                 ..+++.....++.++++||+|||   +.+|+|||||
T Consensus       123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik  199 (344)
T 1rjb_A          123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLA  199 (344)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCS
T ss_pred             ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            54432222111                                 12577788899999999999996   5689999999


Q ss_pred             Cccee----------eecccccccCCCccc-cccceeccccccccc
Q 047196          792 PKNVF----------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       792 ~~NIl----------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                      |+||+          |||+++......... .....||++|+|||+
T Consensus       200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  245 (344)
T 1rjb_A          200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPES  245 (344)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHH
T ss_pred             hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHH
Confidence            99998          999998765443322 223447899999996

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.79  E-value=1.6e-19  Score=198.41  Aligned_cols=149  Identities=19%  Similarity=0.217  Sum_probs=115.0

Q ss_pred             HhhcccccceEecCCceEEEEEE------ecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC---CCCceEEEeeeecC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGR------LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR---HRNHVKRISSCSNE  743 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~------~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~---H~niv~~~~~~~~~  743 (827)
                      ..++|...++||+|+||.||+|+      ..+++.||||++....   ..++.+|++++++++   |+|+|++++++...
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~  139 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ  139 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence            34678889999999999999994      3468899999997543   346788898888888   99999999999877


Q ss_pred             Cceeeeeecc---------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------
Q 047196          744 DFKALDCLHS---------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------  796 (827)
Q Consensus       744 ~~~~l~~l~~---------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------  796 (827)
                      +..++...+.               ....+++.....|+.++++||+|||   +.+|+||||||+|||            
T Consensus       140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~  216 (365)
T 3e7e_A          140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDED  216 (365)
T ss_dssp             SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC----
T ss_pred             CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccc
Confidence            6554432221               1235778889999999999999996   578999999999997            


Q ss_pred             ---------eecccccccCCC-ccccccceecccccccccC
Q 047196          797 ---------DFGIGRLLTGDR-SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---------DFGla~~~~~~~-~~~~~~~~gt~~Y~APE~l  827 (827)
                               |||+|+.+.... .......+||++|||||++
T Consensus       217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  257 (365)
T 3e7e_A          217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML  257 (365)
T ss_dssp             --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH
T ss_pred             cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHh
Confidence                     899987654221 1122345699999999973

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.79  E-value=2.2e-19  Score=192.76  Aligned_cols=150  Identities=23%  Similarity=0.406  Sum_probs=116.2

Q ss_pred             hhcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      .++|...+.||+|+||.||+|+.      .+++.||||++.... ....+++.+|++++++++|||||++++++...+..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  101 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL  101 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence            45788889999999999999975      235889999997543 44567899999999999999999999999876654


Q ss_pred             eeeeeccCC----------------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCC
Q 047196          747 ALDCLHSTN----------------------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKP  792 (827)
Q Consensus       747 ~l~~l~~~~----------------------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~  792 (827)
                      ++...+...                                  ..+++.+...++.++++||+|||   +.+|+||||||
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp  178 (314)
T 2ivs_A          102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAA  178 (314)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccch
Confidence            442222111                                  12567778899999999999996   56899999999


Q ss_pred             ccee----------eecccccccCCCccc-cccceeccccccccc
Q 047196          793 KNVF----------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       793 ~NIl----------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                      +||+          |||+++......... .....+|+.|+|||+
T Consensus       179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  223 (314)
T 2ivs_A          179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIES  223 (314)
T ss_dssp             GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHH
T ss_pred             heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhh
Confidence            9998          999998765433322 122347889999996

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.79  E-value=1.5e-19  Score=204.40  Aligned_cols=150  Identities=26%  Similarity=0.448  Sum_probs=111.5

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l~  752 (827)
                      .++|...+.||+|+||.||+|++.++..||||++.... ...++|.+|++++++++|||||++++++.++... +++++.
T Consensus       183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~  261 (452)
T 1fmk_A          183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMS  261 (452)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCT
T ss_pred             hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhc
Confidence            45688889999999999999999888889999987543 2346799999999999999999999998764322 223332


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..          ...+++.+...++.++++||+|||   +++|+||||||+|||          |||+++..........
T Consensus       262 ~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~  338 (452)
T 1fmk_A          262 KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR  338 (452)
T ss_dssp             TCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC----------
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecc
Confidence            21          124677788899999999999996   568999999999998          9999987654332222


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....+|+.|+|||++
T Consensus       339 ~~~~~~~~y~aPE~~  353 (452)
T 1fmk_A          339 QGAKFPIKWTAPEAA  353 (452)
T ss_dssp             ----CCGGGSCHHHH
T ss_pred             cCCcccccccCHhHH
Confidence            223468899999963

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.79  E-value=2.7e-19  Score=204.72  Aligned_cols=149  Identities=24%  Similarity=0.334  Sum_probs=117.9

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--  748 (827)
                      ++|...++||+|+||.||+|+.+ +|+.||||++.....   ...+.+.+|++++++++|||||++++++......++  
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            56888899999999999999875 699999999965422   234678899999999999999999999887765444  


Q ss_pred             eeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          749 DCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       749 ~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      +++...            ...+.+.....++.+++.||+|||   +.+|+||||||+||+          |||+++.+..
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~  341 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA  341 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence            332211            124677788889999999999996   568999999999998          9999987654


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... ....+||+.|||||++
T Consensus       342 ~~~~-~~~~~GT~~Y~APE~l  361 (543)
T 3c4z_A          342 GQTK-TKGYAGTPGFMAPELL  361 (543)
T ss_dssp             TCCC-BCCCCSCTTTSCHHHH
T ss_pred             CCcc-cccccCCccccChhhh
Confidence            4322 2234699999999974

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.79  E-value=1.6e-19  Score=206.56  Aligned_cols=149  Identities=28%  Similarity=0.420  Sum_probs=115.2

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .+.|...+.||+|+||.||+|+.. +++.||||++....  ....+.+.+|++++++++|||||++++++......++..
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            356888999999999999999875 68999999987543  223567899999999999999999999998877555433


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCC
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGD  807 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~  807 (827)
                      .+...          ..+++.....++.++++||+|||   +.+|+||||||+||+             |||+|+.....
T Consensus       116 e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~  192 (494)
T 3lij_A          116 ECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ  192 (494)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC
Confidence            33221          34667778899999999999996   568999999999998             99999876543


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..  ....+||++|+|||++
T Consensus       193 ~~--~~~~~gt~~y~aPE~l  210 (494)
T 3lij_A          193 KK--MKERLGTAYYIAPEVL  210 (494)
T ss_dssp             BC--BCCCCSCTTTCCHHHH
T ss_pred             cc--ccccCCCcCeeCHHHH
Confidence            32  2335699999999973

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.79  E-value=3.9e-19  Score=190.62  Aligned_cols=149  Identities=31%  Similarity=0.407  Sum_probs=113.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|||||++++++......++...
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            56888999999999999999875 58999999986543  3345678899999999999999999999988765444222


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.          ....+++.....++.++++|++|||   +.+|+||||||+||+          |||+++........ 
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-  158 (311)
T 4agu_A           83 YCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDY-  158 (311)
T ss_dssp             CCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC------
T ss_pred             eCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccc-
Confidence            21          1345778888899999999999996   568999999999998          99999876533221 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....||++|+|||++
T Consensus       159 ~~~~~~~~~y~aPE~~  174 (311)
T 4agu_A          159 YDDEVATRWYRSPELL  174 (311)
T ss_dssp             -------GGGCCHHHH
T ss_pred             cCCCcCCccccChHHH
Confidence            2334589999999963

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.79  E-value=9.9e-20  Score=198.48  Aligned_cols=151  Identities=27%  Similarity=0.419  Sum_probs=112.0

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchH-----HHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAM-----ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      ..++|...+.||+|+||.||+|+.. +|+.||||++......     ..+.+.+|++++++++|||||++++++......
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            4567999999999999999999875 6899999998643211     134688999999999999999999999776544


Q ss_pred             ee--eeec--------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          747 AL--DCLH--------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       747 ~l--~~l~--------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      ++  +++.        .....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++....
T Consensus        88 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  164 (346)
T 1ua2_A           88 SLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS  164 (346)
T ss_dssp             EEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTS
T ss_pred             EEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceeccC
Confidence            43  2221        11234667778899999999999996   567999999999998          9999987654


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... ....+||++|+|||++
T Consensus       165 ~~~~-~~~~~~t~~y~aPE~~  184 (346)
T 1ua2_A          165 PNRA-YTHQVVTRWYRAPELL  184 (346)
T ss_dssp             CCCC-CCCSCCCCTTCCHHHH
T ss_pred             Cccc-CCcccccccccCchHh
Confidence            3322 2335689999999963

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.79  E-value=9.9e-20  Score=191.98  Aligned_cols=150  Identities=25%  Similarity=0.460  Sum_probs=117.3

Q ss_pred             HhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCL  751 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l  751 (827)
                      ..++|+..+.||+|+||.||+|+..++..||||++.... ...+.+.+|++++++++|||++++++++..+... ++++.
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~   89 (279)
T 1qpc_A           11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYM   89 (279)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred             CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecC
Confidence            346788899999999999999998888899999996543 2346789999999999999999999998755432 22333


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ...          ...+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++.........
T Consensus        90 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  166 (279)
T 1qpc_A           90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA  166 (279)
T ss_dssp             TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEEC
T ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccccc
Confidence            211          114677888899999999999996   568999999999998          999998765433222


Q ss_pred             cccceeccccccccc
Q 047196          812 QTETLVTIGYMAPGL  826 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~  826 (827)
                      .....+|+.|+|||+
T Consensus       167 ~~~~~~~~~y~aPE~  181 (279)
T 1qpc_A          167 REGAKFPIKWTAPEA  181 (279)
T ss_dssp             CTTCCCCTTTSCHHH
T ss_pred             ccCCCCccCccChhh
Confidence            223347889999996

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.79  E-value=3.8e-19  Score=191.96  Aligned_cols=141  Identities=27%  Similarity=0.330  Sum_probs=99.3

Q ss_pred             cceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCceeeeeeccC---
Q 047196          680 ENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKALDCLHST---  754 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~l~~l~~~---  754 (827)
                      .+.||+|+||.||+|+.. +|+.||||++...   ....+.+|++++++++ |||||++++++.+....++...+..   
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE   92 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence            478999999999999875 6899999998643   3456789999999998 9999999999988775554332221   


Q ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCCcccccc
Q 047196          755 -------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       755 -------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~~~~~~~  814 (827)
                             ...+++.+...++.++++||+|||   +.+|+||||||+||+             |||+++........ ...
T Consensus        93 L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~-~~~  168 (325)
T 3kn6_A           93 LFERIKKKKHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQP-LKT  168 (325)
T ss_dssp             HHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC--------
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCc-ccc
Confidence                   234677888899999999999996   568999999999998             99999866543322 233


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      .+||++|+|||++
T Consensus       169 ~~~t~~y~aPE~~  181 (325)
T 3kn6_A          169 PCFTLHYAAPELL  181 (325)
T ss_dssp             -------------
T ss_pred             cCCCcCccCHHHh
Confidence            4589999999974

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.79  E-value=1.9e-19  Score=189.99  Aligned_cols=150  Identities=26%  Similarity=0.440  Sum_probs=112.8

Q ss_pred             hhcccccceEecCCceEEEEEEecC----CcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHD----GIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-A  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~  747 (827)
                      .++|...+.||+|+||.||+|+...    +..||||++... .....++|.+|++++++++|||++++++++.+.... .
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v   90 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWII   90 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEEE
Confidence            4678889999999999999998542    346999998754 344567899999999999999999999998765432 2


Q ss_pred             eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      +++...         ....+++.....++.++++|++|||   +.+|+||||||+||+          |||+++......
T Consensus        91 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  167 (281)
T 3cc6_A           91 MELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDED  167 (281)
T ss_dssp             EECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC----
T ss_pred             EecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCccccccc
Confidence            233221         1234677888899999999999996   568999999999998          999998765433


Q ss_pred             ccccccceeccccccccc
Q 047196          809 SMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~  826 (827)
                      ........+|++|+|||+
T Consensus       168 ~~~~~~~~~~~~y~aPE~  185 (281)
T 3cc6_A          168 YYKASVTRLPIKWMSPES  185 (281)
T ss_dssp             -----CCCCCGGGCCHHH
T ss_pred             ccccccCCCCcceeCchh
Confidence            222223347889999996

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.79  E-value=2.4e-19  Score=197.39  Aligned_cols=148  Identities=24%  Similarity=0.338  Sum_probs=107.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-------  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-------  744 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++...  .....+.+.+|++++++++|||||++++++....       
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~  104 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD  104 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence            57888999999999999999864 6899999998653  2344567899999999999999999999987654       


Q ss_pred             -ceeeeeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          745 -FKALDCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       745 -~~~l~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +.+++++...     ...+++.....++.++++||+|||   +.+|+||||||+||+          |||+|+......
T Consensus       105 ~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~  181 (371)
T 2xrw_A          105 VYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF  181 (371)
T ss_dssp             EEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC--------
T ss_pred             eEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeeccccccccc
Confidence             2223333211     134677778889999999999996   568999999999998          999998764332


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .  ....+||+.|+|||++
T Consensus       182 ~--~~~~~gt~~y~aPE~~  198 (371)
T 2xrw_A          182 M--MTPYVVTRYYRAPEVI  198 (371)
T ss_dssp             ----------CTTCCHHHH
T ss_pred             c--cCCceecCCccCHHHh
Confidence            1  2334689999999963

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.79  E-value=1.3e-19  Score=189.57  Aligned_cols=148  Identities=26%  Similarity=0.408  Sum_probs=116.4

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~  752 (827)
                      ++|...+.||+|+||.||+|+..+++.||||++..... ..+.+.+|++++++++|||++++++++...+..++  ++..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME   86 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence            56888899999999999999988888999999975432 23678999999999999999999999987654443  2221


Q ss_pred             c---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 S---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 ~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .         ....+++.....++.++++|++|||   +.+|+||||||+||+          |||+++...........
T Consensus        87 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~  163 (267)
T 3t9t_A           87 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST  163 (267)
T ss_dssp             TCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTT
T ss_pred             CCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccccccccccc
Confidence            1         1234677788899999999999996   568999999999998          99999876432221122


Q ss_pred             cceeccccccccc
Q 047196          814 ETLVTIGYMAPGL  826 (827)
Q Consensus       814 ~~~gt~~Y~APE~  826 (827)
                      ...+|+.|+|||+
T Consensus       164 ~~~~~~~y~aPE~  176 (267)
T 3t9t_A          164 GTKFPVKWASPEV  176 (267)
T ss_dssp             STTCCGGGCCHHH
T ss_pred             cccccccccChhh
Confidence            2347889999996

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.79  E-value=3e-19  Score=193.98  Aligned_cols=147  Identities=22%  Similarity=0.382  Sum_probs=115.5

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ..++|+..+.||+|+||.||+|+.+ +|+.||||++.....    .+.+|++++.++ +|||||++++++.+.+..++..
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   95 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT   95 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence            3467899999999999999999875 689999999965432    245788889888 7999999999998877555433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eecccccccC
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRLLTG  806 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~~~~~  806 (827)
                      .+..          ...+++.+...++.++++||+|||   +.+|+||||||+||+              |||+++....
T Consensus        96 E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~  172 (342)
T 2qr7_A           96 ELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRA  172 (342)
T ss_dssp             CCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBC
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcC
Confidence            2221          234677788899999999999996   568999999999997              9999987654


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .... ....+||+.|+|||++
T Consensus       173 ~~~~-~~~~~gt~~y~aPE~~  192 (342)
T 2qr7_A          173 ENGL-LMTPCYTANFVAPEVL  192 (342)
T ss_dssp             TTCC-BCCSSCCSSCCCHHHH
T ss_pred             CCCc-eeccCCCccccCHHHh
Confidence            4332 2234689999999973

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.79  E-value=1.1e-19  Score=199.46  Aligned_cols=156  Identities=24%  Similarity=0.352  Sum_probs=114.6

Q ss_pred             chhHHHHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccc-----------hHHHHHHHHHHHHHHhcCCCCce
Q 047196          666 SYQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC-----------AMALKSFEAECEVMKNIRHRNHV  734 (827)
Q Consensus       666 ~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-----------~~~~~~~~~Ei~~l~~l~H~niv  734 (827)
                      ...++....++|...+.||+|+||.||+|+..+|+.||||++....           ....+.+.+|++++++++|||||
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            4566777788999999999999999999998889999999985321           12247899999999999999999


Q ss_pred             EEEeeeecCC-------ceeeeeec--------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---
Q 047196          735 KRISSCSNED-------FKALDCLH--------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---  796 (827)
Q Consensus       735 ~~~~~~~~~~-------~~~l~~l~--------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---  796 (827)
                      ++++++...+       +.++++..        .....+++.....++.++++||+|||   +.+|+||||||+||+   
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~  169 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLAD  169 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECT
T ss_pred             ceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEcC
Confidence            9999885422       12223222        12235788889999999999999996   468999999999998   


Q ss_pred             -------eecccccccCCCccccccceeccccccccc
Q 047196          797 -------DFGIGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       797 -------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                             |||+++.......  .....||+.|+|||+
T Consensus       170 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~t~~y~aPE~  204 (362)
T 3pg1_A          170 NNDITICDFNLAREDTADAN--KTHYVTHRWYRAPEL  204 (362)
T ss_dssp             TCCEEECCTTC-----------------CGGGCCHHH
T ss_pred             CCCEEEEecCcccccccccc--cceecccceecCcHH
Confidence                   9999976543322  233458999999996

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.78  E-value=1.4e-19  Score=195.86  Aligned_cols=152  Identities=23%  Similarity=0.347  Sum_probs=112.0

Q ss_pred             HHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ...++|...+.||+|+||.||+|+. .+|+.||||++.....  ...+.+.+|++++++++|||||++++++......++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            3456899999999999999999985 4689999999865432  234568899999999999999999999988775544


Q ss_pred             eeeccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccccc
Q 047196          749 DCLHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLL  804 (827)
Q Consensus       749 ~~l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~~~  804 (827)
                      ...+..         ...+++.....|+.++++||+|||   +.+|+||||||+||+               |||+|+..
T Consensus       111 v~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~  187 (329)
T 3gbz_A          111 IFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAF  187 (329)
T ss_dssp             EEECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHH
T ss_pred             EEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCcccc
Confidence            332221         234677788899999999999996   568999999999987               89998876


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...... ....+||++|+|||++
T Consensus       188 ~~~~~~-~~~~~~t~~y~aPE~~  209 (329)
T 3gbz_A          188 GIPIRQ-FTHEIITLWYRPPEIL  209 (329)
T ss_dssp             C------------CCTTCCHHHH
T ss_pred             CCcccc-cCCCcCCccccCHHHh
Confidence            433221 2334589999999963

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.78  E-value=8.2e-19  Score=192.55  Aligned_cols=152  Identities=25%  Similarity=0.387  Sum_probs=120.1

Q ss_pred             HHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--------hHHHHHHHHHHHHHHhc-CCCCceEEEeee
Q 047196          671 FRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--------AMALKSFEAECEVMKNI-RHRNHVKRISSC  740 (827)
Q Consensus       671 ~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--------~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~  740 (827)
                      ....++|...+.||+|+||.||+|+.. +|+.||||++....        ....+.+.+|+.+++++ +||||+++++++
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            344567999999999999999999975 79999999986432        12245788999999999 799999999999


Q ss_pred             ecCCceeeeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecc
Q 047196          741 SNEDFKALDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI  800 (827)
Q Consensus       741 ~~~~~~~l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGl  800 (827)
                      ......++...+...          ..+++.....++.++++||.|||   +.+|+||||||+||+          |||+
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~  246 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGF  246 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEecCc
Confidence            877765553333222          34677778899999999999996   468999999999998          9999


Q ss_pred             cccccCCCccccccceecccccccccC
Q 047196          801 GRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ++.+.....  ....+||++|+|||++
T Consensus       247 ~~~~~~~~~--~~~~~gt~~y~aPE~~  271 (365)
T 2y7j_A          247 SCHLEPGEK--LRELCGTPGYLAPEIL  271 (365)
T ss_dssp             CEECCTTCC--BCCCCSCGGGCCHHHH
T ss_pred             ccccCCCcc--cccCCCCCCccChhhc
Confidence            987654332  2334699999999963

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.78  E-value=1e-19  Score=199.04  Aligned_cols=151  Identities=25%  Similarity=0.309  Sum_probs=117.2

Q ss_pred             hhcccccceEecCCceEEEEEEe----cCCcEEEEEEEcccc----hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL----HDGIEVAIKVFHQNC----AMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      .++|+..+.||+|+||.||+|+.    .+|+.||||++....    ....+.+.+|+++++++ +||||+++++++..+.
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            36789999999999999999986    368999999986432    12345678899999999 6999999999998776


Q ss_pred             ceeeeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccc
Q 047196          745 FKALDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLL  804 (827)
Q Consensus       745 ~~~l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~  804 (827)
                      ..++...+...          ..+++.....++.++++||+|||   +.+|+||||||+||+          |||+++..
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence            55443333221          34667778889999999999996   568999999999998          99999876


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...........+||++|+|||++
T Consensus       210 ~~~~~~~~~~~~gt~~y~aPE~~  232 (355)
T 1vzo_A          210 VADETERAYDFCGTIEYMAPDIV  232 (355)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHH
T ss_pred             ccCCCCcccCcccCcCccChhhh
Confidence            43333222334699999999973

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.78  E-value=2.5e-19  Score=193.63  Aligned_cols=150  Identities=25%  Similarity=0.372  Sum_probs=118.0

Q ss_pred             hcccccceEecCCceEEEEEEe-----cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--cee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~~  747 (827)
                      ++|+..+.||+|+||.||+|++     .+++.||||++........+.+.+|++++++++|+||+++++++..++  ..+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            5688889999999999999984     358899999998776666778999999999999999999999886432  222


Q ss_pred             --eeeeccC---------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          748 --LDCLHST---------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       748 --l~~l~~~---------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                        ++++...         ...+++.....++.++++||+|||   +.+|+||||||+||+          |||+++....
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~  179 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPL  179 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECCT
T ss_pred             EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceeccc
Confidence              2333211         234678888999999999999996   568999999999998          9999987754


Q ss_pred             CCcc--ccccceecccccccccC
Q 047196          807 DRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ....  ......||+.|+|||++
T Consensus       180 ~~~~~~~~~~~~~~~~y~aPE~~  202 (327)
T 3lxl_A          180 DKDYYVVREPGQSPIFWYAPESL  202 (327)
T ss_dssp             TCSEEECSSCCCSCGGGSCHHHH
T ss_pred             CCccceeeccCCccccccCHHHh
Confidence            4322  12223478899999963

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.78  E-value=4e-19  Score=203.84  Aligned_cols=149  Identities=27%  Similarity=0.420  Sum_probs=116.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch-------------HHHHHHHHHHHHHHhcCCCCceEEEee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-------------MALKSFEAECEVMKNIRHRNHVKRISS  739 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-------------~~~~~~~~Ei~~l~~l~H~niv~~~~~  739 (827)
                      .++|...+.||+|+||.||+|+.. +++.||||++.....             ...+.+.+|++++++++|||||+++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            467888999999999999999865 588999999865321             224678999999999999999999999


Q ss_pred             eecCCceeeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------
Q 047196          740 CSNEDFKALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------  796 (827)
Q Consensus       740 ~~~~~~~~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------  796 (827)
                      +.+....++...+..          ...+++.....++.+++.||+|||   +.+|+||||||+||+             
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~  191 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKIV  191 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEEEC
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEEEE
Confidence            988776554333222          134677888899999999999996   568999999999998             


Q ss_pred             eecccccccCCCccccccceecccccccccC
Q 047196          797 DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |||+|+.......  ....+||++|+|||++
T Consensus       192 Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~  220 (504)
T 3q5i_A          192 DFGLSSFFSKDYK--LRDRLGTAYYIAPEVL  220 (504)
T ss_dssp             CCTTCEECCTTSC--BCCCCSCTTTCCHHHH
T ss_pred             ECCCCEEcCCCCc--cccccCCcCCCCHHHh
Confidence            9999987654432  2335699999999973

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.78  E-value=3e-19  Score=189.15  Aligned_cols=148  Identities=30%  Similarity=0.479  Sum_probs=117.1

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchH-------HHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAM-------ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-------~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      ++|+..+.||+|+||.||+|+. .+++.||||++......       ..+++.+|++++++++||||+++++++.+..+.
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~l   98 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRM   98 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTEE
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCeE
Confidence            5688889999999999999987 47899999998543211       126799999999999999999999999887766


Q ss_pred             eeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccc
Q 047196          747 ALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGR  802 (827)
Q Consensus       747 ~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~  802 (827)
                      ++++...         ....+++.....++.++++|++|||. +.++|+||||||+||+               |||+++
T Consensus        99 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~-~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~  177 (287)
T 4f0f_A           99 VMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ  177 (287)
T ss_dssp             EEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHT-SSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCB
T ss_pred             EEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHh-CCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccc
Confidence            6655432         23457888889999999999999973 2233999999999987               888887


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....    .....||+.|+|||++
T Consensus       178 ~~~~~----~~~~~g~~~y~aPE~~  198 (287)
T 4f0f_A          178 QSVHS----VSGLLGNFQWMAPETI  198 (287)
T ss_dssp             CCSSC----EECCCCCCTTSCGGGS
T ss_pred             ccccc----ccccCCCccccCchhh
Confidence            54322    2234589999999974

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.78  E-value=5e-19  Score=191.90  Aligned_cols=151  Identities=26%  Similarity=0.455  Sum_probs=115.5

Q ss_pred             hhcccccceEecCCceEEEEEEec--------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecC
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH--------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNE  743 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~  743 (827)
                      .++|...+.||+|+||.||+|+..        +++.||||++.... ....+++.+|+++++++ +||||+++++++...
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            367888899999999999999863        46789999997543 34567899999999999 899999999999876


Q ss_pred             Cceee--eeeccC------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          744 DFKAL--DCLHST------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       744 ~~~~l--~~l~~~------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                      +..++  ++....                        ...+++.+...++.++++||+|||   +.+|+||||||+||+ 
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll  190 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV  190 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred             CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEE
Confidence            65443  222110                        113677888999999999999996   568999999999998 


Q ss_pred             ---------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 ---------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                               |||+++......... .....+|++|+|||++
T Consensus       191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  231 (334)
T 2pvf_A          191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL  231 (334)
T ss_dssp             CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHH
T ss_pred             cCCCCEEEccccccccccccccccccCCCCcccceeChHHh
Confidence                     999998765433221 1223478899999963

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.78  E-value=5.1e-19  Score=186.38  Aligned_cols=150  Identities=24%  Similarity=0.402  Sum_probs=105.5

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++.....   ...+++.+|++++++++||||+++++++...+..++.
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35788899999999999999986 5789999999864322   1246789999999999999999999999887755443


Q ss_pred             eecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          750 CLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       750 ~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ..+.           ....+++.....++.++++|++|||   +.+|+||||||+||+          |||+++......
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~  166 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH  166 (278)
T ss_dssp             EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred             EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence            2221           1245778888999999999999996   568999999999998          999998764332


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .. .....||+.|+|||++
T Consensus       167 ~~-~~~~~~~~~y~aPE~~  184 (278)
T 3cok_A          167 EK-HYTLCGTPNYISPEIA  184 (278)
T ss_dssp             -------------------
T ss_pred             Cc-ceeccCCCCcCCcchh
Confidence            21 1224589999999974

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.78  E-value=1.6e-19  Score=194.72  Aligned_cols=151  Identities=24%  Similarity=0.430  Sum_probs=102.8

Q ss_pred             HhhcccccceEecCCceEEEEEEecC-C---cEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHD-G---IEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~-g---~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-  745 (827)
                      ..++|+..+.||+|+||.||+|+... +   ..||||++...  .....+++.+|++++++++|||||++++++..... 
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence            34678899999999999999998653 3   37999998654  23446789999999999999999999999876543 


Q ss_pred             -------eeeeeeccC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------
Q 047196          746 -------KALDCLHST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------  796 (827)
Q Consensus       746 -------~~l~~l~~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------  796 (827)
                             .++++....              ...+++.+...++.++++||+|||   +.+|+||||||+||+        
T Consensus       101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~k  177 (323)
T 3qup_A          101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVC  177 (323)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEE
T ss_pred             cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEE
Confidence                   223332221              014677888999999999999996   568999999999998        


Q ss_pred             --eecccccccCCCccc-cccceeccccccccc
Q 047196          797 --DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       797 --DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                        |||+|+......... .....+|+.|+|||+
T Consensus       178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~  210 (323)
T 3qup_A          178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALES  210 (323)
T ss_dssp             ECCCCC-----------------CCGGGCCHHH
T ss_pred             EeeccccccccccccccccccccCcccccCchh
Confidence              999998764433221 122336889999996

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.78  E-value=1.9e-19  Score=197.68  Aligned_cols=149  Identities=29%  Similarity=0.330  Sum_probs=108.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHH-HHhcCCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEV-MKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~-l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|+..++||+|+||+||+|+.+ +++.||||++....   ....+.+.+|..+ ++.++|||||++++++...+..++.
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv  117 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV  117 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence            57889999999999999999875 58899999997543   2234556777776 5778999999999999887765543


Q ss_pred             eeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+...          ..+.......++.+++.||+|||   +.+|+||||||+|||          |||+++.......
T Consensus       118 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~  194 (373)
T 2r5t_A          118 LDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNS  194 (373)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCC
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccCCC
Confidence            333222          23556667789999999999996   568999999999998          9999986543322


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . ....+||+.|||||++
T Consensus       195 ~-~~~~~gt~~y~aPE~~  211 (373)
T 2r5t_A          195 T-TSTFCGTPEYLAPEVL  211 (373)
T ss_dssp             C-CCSBSCCCCCCCHHHH
T ss_pred             c-cccccCCccccCHHHh
Confidence            2 2335699999999973

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.78  E-value=4.6e-19  Score=190.10  Aligned_cols=150  Identities=23%  Similarity=0.438  Sum_probs=117.2

Q ss_pred             hhcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~  745 (827)
                      .++|...+.||+|+||.||+|+.      .+++.||||++.... ....+.+.+|+++++++ +|||||++++++..++.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~  101 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence            35788889999999999999984      246889999997543 34457899999999999 99999999999987664


Q ss_pred             eee--eeecc---------C-----------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          746 KAL--DCLHS---------T-----------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       746 ~~l--~~l~~---------~-----------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                      .++  ++...         .                 ...+++.+...++.++++||+|||   +.+|+||||||+||+ 
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~  178 (313)
T 1t46_A          102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILL  178 (313)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred             cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEE
Confidence            443  22211         0                 113778888999999999999996   568999999999998 


Q ss_pred             ---------eecccccccCCCccc-cccceeccccccccc
Q 047196          797 ---------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       797 ---------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                               |||+++......... .....||++|+|||+
T Consensus       179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  218 (313)
T 1t46_A          179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES  218 (313)
T ss_dssp             ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHH
T ss_pred             cCCCCEEEccccccccccccccceeccCCCCcceeeChHH
Confidence                     999998775543322 223447899999996

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.78  E-value=1.3e-19  Score=191.93  Aligned_cols=150  Identities=29%  Similarity=0.508  Sum_probs=119.8

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--e
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      ..++|...+.||+|+||.||+|+.. ++..||||++.... ...+++.+|++++++++||||+++++++..+...++  +
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   89 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   89 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence            4567888999999999999999875 48899999997543 345779999999999999999999999987765443  2


Q ss_pred             eecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      +...          ....+++.....++.++++|++|||   +.+|+||||||+||+          |||+++.......
T Consensus        90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  166 (288)
T 3kfa_A           90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  166 (288)
T ss_dssp             CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSS
T ss_pred             cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCcc
Confidence            2221          1234778888899999999999996   457999999999998          9999987765443


Q ss_pred             cccccceeccccccccc
Q 047196          810 MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~  826 (827)
                      .......+|+.|+|||+
T Consensus       167 ~~~~~~~~~~~y~aPE~  183 (288)
T 3kfa_A          167 TAHAGAKFPIKWTAPES  183 (288)
T ss_dssp             EEETTEEECGGGCCHHH
T ss_pred             ccccCCccccCcCChhh
Confidence            33333457899999996

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.78  E-value=6.5e-19  Score=186.57  Aligned_cols=150  Identities=24%  Similarity=0.443  Sum_probs=114.4

Q ss_pred             hcccccc-eEecCCceEEEEEEec---CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-e
Q 047196          675 EKFSKEN-LIGVGSFGSVYKGRLH---DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-L  748 (827)
Q Consensus       675 ~~~~~~~-~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-l  748 (827)
                      ++|...+ .||+|+||.||+|+..   +++.||||++... .....+++.+|++++++++||||+++++++..+...+ +
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~   88 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM   88 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEE
Confidence            3455555 8999999999999853   5788999999764 3445678999999999999999999999995544322 2


Q ss_pred             eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          749 DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 ~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ++..         .....+++.....++.++++||.|||   +.+|+||||||+||+          |||+++.......
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~  165 (287)
T 1u59_A           89 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  165 (287)
T ss_dssp             ECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             EeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcc
Confidence            2221         12345788889999999999999996   568999999999998          9999987754332


Q ss_pred             cc--cccceecccccccccC
Q 047196          810 MI--QTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~--~~~~~gt~~Y~APE~l  827 (827)
                      ..  .....+|+.|+|||++
T Consensus       166 ~~~~~~~~~~~~~y~aPE~~  185 (287)
T 1u59_A          166 YYTARSAGKWPLKWYAPECI  185 (287)
T ss_dssp             EECCCCSSCCCGGGCCHHHH
T ss_pred             eeeccccccccccccCHHHh
Confidence            21  1223368999999963

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.78  E-value=2e-19  Score=192.55  Aligned_cols=150  Identities=29%  Similarity=0.481  Sum_probs=111.6

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-----hHHHHHHHHHHHHHHhcC---CCCceEEEeeeecC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-----AMALKSFEAECEVMKNIR---HRNHVKRISSCSNE  743 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~Ei~~l~~l~---H~niv~~~~~~~~~  743 (827)
                      ..++|+..+.||+|+||.||+|+. .+|+.||||++....     ......+.+|++++++++   |||||++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            356899999999999999999996 568999999986322     111345677888777765   99999999998764


Q ss_pred             Cc-----e--eeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------e
Q 047196          744 DF-----K--ALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------D  797 (827)
Q Consensus       744 ~~-----~--~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------D  797 (827)
                      ..     .  ++++...         ....+++.....++.++++||+|||   +.+|+||||||+||+          |
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~D  163 (308)
T 3g33_A           87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLAD  163 (308)
T ss_dssp             CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEECS
T ss_pred             CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEee
Confidence            41     1  2222221         1123788888999999999999996   567999999999998          9


Q ss_pred             ecccccccCCCccccccceecccccccccC
Q 047196          798 FGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       798 FGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ||+|+.......  .....||+.|+|||++
T Consensus       164 fg~a~~~~~~~~--~~~~~gt~~y~aPE~~  191 (308)
T 3g33_A          164 FGLARIYSYQMA--LTPVVVTLWYRAPEVL  191 (308)
T ss_dssp             CSCTTTSTTCCC--SGGGGCCCSSCCHHHH
T ss_pred             CccccccCCCcc--cCCccccccccCchHH
Confidence            999987643322  2335689999999963

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=7.3e-19  Score=178.33  Aligned_cols=133  Identities=20%  Similarity=0.196  Sum_probs=67.3

Q ss_pred             cEEECCCCCCCCCCC-ccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCC
Q 047196          431 QGLYLPFNKLAGSIP-DQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSS  509 (827)
Q Consensus       431 ~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  509 (827)
                      +.|+|++|++++..| ..|..+++|+.|+|++|++++..|..|.++++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  114 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS  114 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence            344444444433322 2234444444444444444444444444455555555555555544444455555555555555


Q ss_pred             CCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceee
Q 047196          510 NSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGL  563 (827)
Q Consensus       510 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  563 (827)
                      |++++..|..+..+++|+.|+|++|+|++..|..|..+++|+.|+|++|.+++.
T Consensus       115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            555555555555555555555555555555555566666666666655555543

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.78  E-value=1.1e-19  Score=192.51  Aligned_cols=145  Identities=24%  Similarity=0.387  Sum_probs=112.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CC-------cEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DG-------IEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g-------~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      ++|...+.||+|+||.||+|+.. ++       ..||+|++........+.+.+|++++++++|||||++++++..++..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN   87 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence            57888899999999999999864 33       57999999766556667899999999999999999999999876654


Q ss_pred             ee--eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------------e
Q 047196          747 AL--DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------------D  797 (827)
Q Consensus       747 ~l--~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------------D  797 (827)
                      ++  ++...         ....+++..+..++.++++||+|||   +++|+||||||+||+                  |
T Consensus        88 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~D  164 (289)
T 4fvq_A           88 ILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSD  164 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECC
T ss_pred             EEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeecc
Confidence            44  33321         1123677788899999999999996   567999999999998                  5


Q ss_pred             ecccccccCCCccccccceecccccccccC
Q 047196          798 FGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       798 FGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ||+++....     .....||++|+|||++
T Consensus       165 fg~~~~~~~-----~~~~~~~~~y~aPE~~  189 (289)
T 4fvq_A          165 PGISITVLP-----KDILQERIPWVPPECI  189 (289)
T ss_dssp             CCSCTTTSC-----HHHHHHTTTTSCHHHH
T ss_pred             CcccccccC-----ccccCCcCcccCHHHh
Confidence            555543321     1123479999999963

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=6.9e-19  Score=178.51  Aligned_cols=157  Identities=22%  Similarity=0.250  Sum_probs=120.2

Q ss_pred             ccEEEccCCcCccccCccccCCCCCceEeccCcccccccc-ccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP-VTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       382 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      -+.+++++|.++. +|..+.  ..++.|+|++|++++..| ..|..+++|+.|+|++|++++..+..|.++++|++|+|+
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3567777777764 555442  356778888888877654 346778888888888888877666677788888888888


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++..|..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|.+++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            88887766667778888888888888888877888888888888888888888877888888888888888888888755


Q ss_pred             c
Q 047196          541 P  541 (827)
Q Consensus       541 p  541 (827)
                      +
T Consensus       170 ~  170 (220)
T 2v70_A          170 Y  170 (220)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.78  E-value=8.1e-19  Score=186.53  Aligned_cols=149  Identities=20%  Similarity=0.275  Sum_probs=118.9

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|...+.||+|+||.||+|+.. +++.||+|++...   .....+.+.+|++++++++|+|||++++++...+..++.
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            357888999999999999999875 5889999998653   234567899999999999999999999999887765543


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+..          ...+++.+...++.++++|++|||   +.+|+||||||+||+          |||+++.......
T Consensus        94 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  170 (294)
T 2rku_A           94 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE  170 (294)
T ss_dssp             EECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCcc
Confidence            33322          134677788899999999999996   568999999999998          9999987653332


Q ss_pred             cccccceeccccccccc
Q 047196          810 MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~  826 (827)
                      . .....||++|+|||+
T Consensus       171 ~-~~~~~~~~~y~aPE~  186 (294)
T 2rku_A          171 R-KKVLCGTPNYIAPEV  186 (294)
T ss_dssp             C-BCCCCSCCSSCCHHH
T ss_pred             c-cccccCCCCcCCcch
Confidence            2 223458999999996

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.78  E-value=5.8e-19  Score=189.16  Aligned_cols=151  Identities=23%  Similarity=0.297  Sum_probs=112.0

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|...+.||+|+||.||+|+.. +++.||||++....   ....+.+.+|++++++++||||+++++++..++..++.
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            467899999999999999999865 68999999986542   23457899999999999999999999999877655443


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+..          ...+++.+...++.++++|++|||   +.+|+||||||+||+          |||+++.......
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  189 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKL  189 (309)
T ss_dssp             EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC---------
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCcccccccc
Confidence            32221          234677888899999999999996   568999999999998          9999887654332


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      .......||+.|+|||++
T Consensus       190 ~~~~~~~~~~~y~aPE~~  207 (309)
T 2h34_A          190 TQLGNTVGTLYYMAPERF  207 (309)
T ss_dssp             -------CCGGGCCGGGT
T ss_pred             ccccccCCCcCccCHHHH
Confidence            222334589999999974

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.78  E-value=7.4e-19  Score=190.60  Aligned_cols=150  Identities=21%  Similarity=0.282  Sum_probs=119.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|...+.||+|+||.||+|+.. +++.||+|++...   .....+.+.+|++++++++|+|||++++++.+.+..++.
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            357888999999999999999875 5889999998653   234567899999999999999999999999887755543


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+..          ...+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++.......
T Consensus       120 ~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  196 (335)
T 2owb_A          120 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE  196 (335)
T ss_dssp             ECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             EecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCcc
Confidence            33222          134677788899999999999996   568999999999998          9999987653332


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . .....||++|+|||++
T Consensus       197 ~-~~~~~gt~~y~aPE~~  213 (335)
T 2owb_A          197 R-KKVLCGTPNYIAPEVL  213 (335)
T ss_dssp             C-BCCCCSCCSSCCHHHH
T ss_pred             c-ccccCCCccccCHHHh
Confidence            2 2234589999999963

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.78  E-value=2.7e-19  Score=195.44  Aligned_cols=151  Identities=27%  Similarity=0.427  Sum_probs=116.5

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----  745 (827)
                      .++|+..+.||+|+||.||+|+. .+|+.||||++....  ......+.+|++++++++|||||++++++.....     
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            36788999999999999999987 578999999985432  2234578899999999999999999999876431     


Q ss_pred             -----eeeeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          746 -----KALDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       746 -----~~l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                           .++++...        ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+|+
T Consensus        96 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~  172 (351)
T 3mi9_A           96 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLAR  172 (351)
T ss_dssp             -CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhcc
Confidence                 22333221        2245788889999999999999996   568999999999998          999998


Q ss_pred             cccCCCcc---ccccceecccccccccC
Q 047196          803 LLTGDRSM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~---~~~~~~gt~~Y~APE~l  827 (827)
                      .+......   .....+||++|+|||++
T Consensus       173 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (351)
T 3mi9_A          173 AFSLAKNSQPNRYTNRVVTLWYRPPELL  200 (351)
T ss_dssp             ECCCCSSSSCCCCCSSCSCGGGCCHHHH
T ss_pred             cccccccccccccCCcccccCccCchhh
Confidence            76432211   12334589999999963

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.78  E-value=1.1e-19  Score=196.63  Aligned_cols=148  Identities=22%  Similarity=0.297  Sum_probs=115.9

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceee--ee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKAL--DC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l--~~  750 (827)
                      ++|...+.||+|+||.||+|+. .+|+.||||++.....  .+.+.+|+++++++ +|+||+++++++...+..++  ++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~   86 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL   86 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence            5788899999999999999986 5789999999865422  34588999999999 99999999999988765444  33


Q ss_pred             ecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccccccCC
Q 047196          751 LHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLLTGD  807 (827)
Q Consensus       751 l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~~~~~~  807 (827)
                      +..        ....+++.....++.++++||+|||   +.+|+||||||+||+               |||+|+.+...
T Consensus        87 ~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~  163 (330)
T 2izr_A           87 LGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDP  163 (330)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCT
T ss_pred             CCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecC
Confidence            311        1245788888999999999999996   568999999999997               89999876443


Q ss_pred             Cccc------cccceecccccccccC
Q 047196          808 RSMI------QTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~------~~~~~gt~~Y~APE~l  827 (827)
                      ....      .....||+.|+|||++
T Consensus       164 ~~~~~~~~~~~~~~~gt~~y~aPE~~  189 (330)
T 2izr_A          164 ETKKHIPYREHKSLTGTARYMSINTH  189 (330)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             CCCccccccccCCcCCCccccChHHH
Confidence            2211      1234599999999963

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.78  E-value=3e-19  Score=190.60  Aligned_cols=150  Identities=25%  Similarity=0.463  Sum_probs=113.9

Q ss_pred             hcccccceEecCCceEEEEEEe-----cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Cce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~  746 (827)
                      +.|+..+.||+|+||.||+|++     .+++.||||++.... ....+.+.+|++++++++||||+++++++...  ...
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            4578889999999999999984     368999999997442 23356799999999999999999999998775  322


Q ss_pred             --eeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          747 --ALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       747 --~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                        .+++...         ....+++.+...++.+++.||+|||   +.+|+||||||+||+          |||+++...
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  177 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE  177 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccccccc
Confidence              2333321         1234677888899999999999996   568999999999998          999998775


Q ss_pred             CCCcc--ccccceecccccccccC
Q 047196          806 GDRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      .....  ......||..|+|||++
T Consensus       178 ~~~~~~~~~~~~~~~~~y~aPE~~  201 (302)
T 4e5w_A          178 TDKEYYTVKDDRDSPVFWYAPECL  201 (302)
T ss_dssp             TTCCEEECCCCTTCCGGGCCHHHH
T ss_pred             CCCcceeccCCCCCCccccCCeee
Confidence            44322  12233478899999963

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.78  E-value=1.6e-19  Score=194.64  Aligned_cols=156  Identities=24%  Similarity=0.346  Sum_probs=119.2

Q ss_pred             hHHHHHhhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeee
Q 047196          668 QDLFRATEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSC  740 (827)
Q Consensus       668 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~  740 (827)
                      +++....++|...+.||+|+||.||+|+..      +++.||||++.... .....+|.+|++++++++||||+++++++
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   97 (322)
T 1p4o_A           18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV   97 (322)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence            344445678999999999999999999754      36889999987543 34456799999999999999999999999


Q ss_pred             ecCCceeeeeeccCC--------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----
Q 047196          741 SNEDFKALDCLHSTN--------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----  796 (827)
Q Consensus       741 ~~~~~~~l~~l~~~~--------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----  796 (827)
                      ...+..++...+...                    ..+++.....++.++++||+|||   +.+|+||||||+||+    
T Consensus        98 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~  174 (322)
T 1p4o_A           98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAED  174 (322)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTT
T ss_pred             ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCC
Confidence            876654442222211                    23466778889999999999996   568999999999998    


Q ss_pred             ------eecccccccCCCcc-ccccceeccccccccc
Q 047196          797 ------DFGIGRLLTGDRSM-IQTETLVTIGYMAPGL  826 (827)
Q Consensus       797 ------DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~  826 (827)
                            |||+++........ ......||++|+|||+
T Consensus       175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  211 (322)
T 1p4o_A          175 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPES  211 (322)
T ss_dssp             CCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHH
T ss_pred             CeEEECcCccccccccccccccccCCCCCCCccChhh
Confidence                  99999866433221 1223357899999996

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.78  E-value=2.4e-19  Score=190.13  Aligned_cols=148  Identities=27%  Similarity=0.475  Sum_probs=105.6

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-eee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-LDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-l~~  750 (827)
                      .++|...+.||+|+||.||+|+...  .||||++...  .....+.|.+|++++++++|+|++++++++......+ +++
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~  100 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQW  100 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEEC
T ss_pred             ccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEe
Confidence            3568888999999999999998653  5999998643  3445678999999999999999999999876554322 222


Q ss_pred             ec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-
Q 047196          751 LH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-  810 (827)
Q Consensus       751 l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-  810 (827)
                      +.         .....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++........ 
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  177 (289)
T 3og7_A          101 CEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSH  177 (289)
T ss_dssp             CCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC------------
T ss_pred             cCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccccccc
Confidence            21         22345778888999999999999996   568999999999998          99999865432221 


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                      ......||+.|+|||+
T Consensus       178 ~~~~~~gt~~y~aPE~  193 (289)
T 3og7_A          178 QFEQLSGSILWMAPEV  193 (289)
T ss_dssp             ------CCCTTCCHHH
T ss_pred             cccccCCCccccCchh
Confidence            1222458999999996

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.78  E-value=2.2e-19  Score=197.27  Aligned_cols=147  Identities=24%  Similarity=0.404  Sum_probs=109.7

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++...  .....+++.+|++++++++|||||++++++....      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            35688889999999999999986 46999999998543  2344567899999999999999999999986643      


Q ss_pred             --ceeeeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 --FKALDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 --~~~l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                        +.+++++..      ....+++.....++.|+++||+|||   +.+|+||||||+||+          |||+|+....
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  180 (367)
T 1cm8_A          104 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADS  180 (367)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             eEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeeccccccc
Confidence              223333211      1235677778889999999999996   568999999999998          9999987543


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .    .+..+||++|+|||++
T Consensus       181 ~----~~~~~~t~~y~aPE~~  197 (367)
T 1cm8_A          181 E----MTGYVVTRWYRAPEVI  197 (367)
T ss_dssp             S----CCSSCSCGGGCCTHHH
T ss_pred             c----cCcCcCCCCcCCHHHH
Confidence            2    2334689999999963

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.78  E-value=3.7e-19  Score=195.36  Aligned_cols=150  Identities=25%  Similarity=0.366  Sum_probs=116.7

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED-------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-------  744 (827)
                      .++|...+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++|||||++++++....       
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            457999999999999999999864 68899999997432 344578999999999999999999999986543       


Q ss_pred             ceeeeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          745 FKALDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       745 ~~~l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      +.+++++..      ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus       106 ~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~  182 (364)
T 3qyz_A          106 YIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH  182 (364)
T ss_dssp             EEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGG
T ss_pred             EEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCC
Confidence            122222221      1234677888899999999999996   568999999999998          999998764332


Q ss_pred             ccc--cccceeccccccccc
Q 047196          809 SMI--QTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~~--~~~~~gt~~Y~APE~  826 (827)
                      ...  ....+||++|+|||+
T Consensus       183 ~~~~~~~~~~gt~~y~aPE~  202 (364)
T 3qyz_A          183 DHTGFLTEYVATRWYRAPEI  202 (364)
T ss_dssp             CBCCTTCCCCSCGGGCCHHH
T ss_pred             CccccccccccccCCCCCHH
Confidence            211  233468999999996

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.78  E-value=1.8e-19  Score=205.71  Aligned_cols=149  Identities=26%  Similarity=0.446  Sum_probs=119.2

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|...++||+|+||.||+|+.. +|+.||||++....   ....+.+.+|++++++++|||||++++++......++.
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            357888999999999999999875 78999999986432   23456799999999999999999999999887755543


Q ss_pred             eecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccC
Q 047196          750 CLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTG  806 (827)
Q Consensus       750 ~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~  806 (827)
                      ..+.          ....+++.....++.++++||+|||   +.+|+||||||+||+             |||+|+....
T Consensus       105 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  181 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA  181 (484)
T ss_dssp             ECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc
Confidence            3222          1235677888899999999999996   568999999999998             9999987654


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ...  ....+||++|+|||++
T Consensus       182 ~~~--~~~~~gt~~y~aPE~~  200 (484)
T 3nyv_A          182 SKK--MKDKIGTAYYIAPEVL  200 (484)
T ss_dssp             CCS--HHHHTTGGGTCCHHHH
T ss_pred             ccc--cccCCCCccccCceee
Confidence            332  2234599999999973

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.78  E-value=7.8e-20  Score=197.36  Aligned_cols=148  Identities=26%  Similarity=0.376  Sum_probs=109.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++...... ....+.+|++++++++|||||++++++..+...++...+
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            46888899999999999999875 6899999998654322 222456899999999999999999999877654442222


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++........ .
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~-~  157 (324)
T 3mtl_A           82 LDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT-Y  157 (324)
T ss_dssp             CSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC--------
T ss_pred             cccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccc-c
Confidence            1          1234677788889999999999996   568999999999998          99999865433221 2


Q ss_pred             ccceeccccccccc
Q 047196          813 TETLVTIGYMAPGL  826 (827)
Q Consensus       813 ~~~~gt~~Y~APE~  826 (827)
                      ....||++|+|||+
T Consensus       158 ~~~~~t~~y~aPE~  171 (324)
T 3mtl_A          158 DNEVVTLWYRPPDI  171 (324)
T ss_dssp             -----CGGGCCHHH
T ss_pred             ccccCcccccChhh
Confidence            23458999999996

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.78  E-value=4.7e-19  Score=196.82  Aligned_cols=147  Identities=25%  Similarity=0.393  Sum_probs=115.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--c--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--F--KAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~--~~l  748 (827)
                      ++|...++||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++....  .  .++
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            56888999999999999999875 58999999997543 233567889999999999999999999987654  2  223


Q ss_pred             eeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eeccccc
Q 047196          749 DCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRL  803 (827)
Q Consensus       749 ~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~~  803 (827)
                      +++...           ...+++.....++.+++.||+|||   +.+|+||||||+||+              |||+|+.
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~  165 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence            333211           112788889999999999999996   568999999999996              9999987


Q ss_pred             ccCCCccccccceeccccccccc
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ......  .....||+.|+|||+
T Consensus       166 ~~~~~~--~~~~~gt~~y~aPE~  186 (396)
T 4eut_A          166 LEDDEQ--FVSLYGTEEYLHPDM  186 (396)
T ss_dssp             CCCGGG--SSCSSSCCTTCCHHH
T ss_pred             ccCCCc--cccccCCccccCHHH
Confidence            654322  223458999999996

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.78  E-value=8.5e-20  Score=197.15  Aligned_cols=150  Identities=25%  Similarity=0.413  Sum_probs=110.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcE----EEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIE----VAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~----vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-  747 (827)
                      ++|...+.||+|+||.||+|+.. +|+.    ||+|++.... ....+++.+|+.++++++|||||+++++|.+....+ 
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v   92 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLV   92 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEE
Confidence            46888899999999999999864 4543    7888875432 223356788999999999999999999987554322 


Q ss_pred             eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ++++..         ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+|+......
T Consensus        93 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~  169 (325)
T 3kex_A           93 TQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDD  169 (325)
T ss_dssp             EECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCT
T ss_pred             EEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCccc
Confidence            222221         1235667778899999999999996   567999999999998          999999875443


Q ss_pred             ccc-cccceecccccccccC
Q 047196          809 SMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ... .....||++|+|||++
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~  189 (325)
T 3kex_A          170 KQLLYSEAKTPIKWMALESI  189 (325)
T ss_dssp             TCCC-----CCTTTSCHHHH
T ss_pred             ccccccCCCCcccccChHHh
Confidence            322 2233478899999963

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.78  E-value=6.8e-19  Score=184.62  Aligned_cols=148  Identities=26%  Similarity=0.443  Sum_probs=106.7

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccch----HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA----MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~----~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--  748 (827)
                      ++|+..+.||+|+||.||+|+.. |+.||||++.....    ...+.+.+|++++++++||||+++++++..++..++  
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            57888899999999999999975 78999999864322    234678999999999999999999999987765444  


Q ss_pred             eeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------------eeccccc
Q 047196          749 DCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------------DFGIGRL  803 (827)
Q Consensus       749 ~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------------DFGla~~  803 (827)
                      ++...       ....+++.....++.++++|++|||.....+|+||||||+||+                  |||+++.
T Consensus        86 e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~  165 (271)
T 3dtc_A           86 EFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLARE  165 (271)
T ss_dssp             ECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---
T ss_pred             EcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccc
Confidence            33221       1345778888999999999999998644445999999999997                  7888876


Q ss_pred             ccCCCccccccceeccccccccc
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ......   ....||++|+|||+
T Consensus       166 ~~~~~~---~~~~~~~~y~aPE~  185 (271)
T 3dtc_A          166 WHRTTK---MSAAGAYAWMAPEV  185 (271)
T ss_dssp             -------------CCGGGSCHHH
T ss_pred             cccccc---cCCCCccceeCHHH
Confidence            543222   23458999999996

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.78  E-value=2.7e-19  Score=206.37  Aligned_cols=151  Identities=26%  Similarity=0.446  Sum_probs=116.8

Q ss_pred             HhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCL  751 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l  751 (827)
                      ..++|...+.||+|+||.||+|++.++..||||++.... ...++|.+|+++|++++|+|||++++++.++... +++++
T Consensus       265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~  343 (535)
T 2h8h_A          265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYM  343 (535)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCC
T ss_pred             chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehh
Confidence            345688889999999999999999888889999997543 2346799999999999999999999998764432 22332


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ...          ...+.+.+...|+.++++||+|||   +++|+||||||+|||          |||+++.........
T Consensus       344 ~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~  420 (535)
T 2h8h_A          344 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA  420 (535)
T ss_dssp             TTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHT
T ss_pred             cCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceec
Confidence            211          134677888999999999999996   568999999999998          999998764322111


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....++..|+|||++
T Consensus       421 ~~~~~~~~~y~aPE~~  436 (535)
T 2h8h_A          421 RQGAKFPIKWTAPEAA  436 (535)
T ss_dssp             TCSTTSCGGGSCHHHH
T ss_pred             ccCCcCcccccCHHHh
Confidence            2223368899999963

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.78  E-value=6.1e-19  Score=190.09  Aligned_cols=148  Identities=22%  Similarity=0.367  Sum_probs=117.1

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch------HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA------MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      .+.|...+.||+|+||.||+|+.. +|+.||||++.....      ...+++.+|++++++++||||+++++++......
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            356888999999999999999875 689999999865321      1356799999999999999999999999887655


Q ss_pred             eeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eecccc
Q 047196          747 ALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGR  802 (827)
Q Consensus       747 ~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~  802 (827)
                      ++...+..          ...+++.....++.++++||+|||   +.+|+||||||+||+              |||+++
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~  167 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCE
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccce
Confidence            44333221          234567778899999999999996   568999999999997              899887


Q ss_pred             cccCCCccccccceeccccccccc
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      .......  .....||+.|+|||+
T Consensus       168 ~~~~~~~--~~~~~gt~~y~aPE~  189 (321)
T 2a2a_A          168 EIEDGVE--FKNIFGTPEFVAPEI  189 (321)
T ss_dssp             ECCTTCC--CCCCCSCGGGCCHHH
T ss_pred             ecCcccc--ccccCCCCCccCccc
Confidence            7654322  123458999999996

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.78  E-value=4.1e-19  Score=196.45  Aligned_cols=146  Identities=24%  Similarity=0.347  Sum_probs=111.2

Q ss_pred             HHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      ...++|...+.||+|+||.||+|+. .+|+.||||++.....    ...+|+++++.++|||||++++++....      
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~   79 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP   79 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence            3456899999999999999999986 5799999999865422    2347999999999999999999884421      


Q ss_pred             --------------------------------ce--eeeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047196          745 --------------------------------FK--ALDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHF  779 (827)
Q Consensus       745 --------------------------------~~--~l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~  779 (827)
                                                      +.  +++++..           ....+.+.....++.++++||+||| 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH-  158 (383)
T 3eb0_A           80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH-  158 (383)
T ss_dssp             ------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             cccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence                                            11  2222221           1245677788899999999999996 


Q ss_pred             cCCCCeEEccCCCccee-----------eecccccccCCCccccccceeccccccccc
Q 047196          780 SHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       780 ~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                        +.+|+||||||+||+           |||+|+........  ....||+.|+|||+
T Consensus       159 --~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~t~~y~aPE~  212 (383)
T 3eb0_A          159 --SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPS--VAYICSRFYRAPEL  212 (383)
T ss_dssp             --TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCC--CCCCCCSSCCCHHH
T ss_pred             --HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCC--cCcccCCCccCHHH
Confidence              678999999999998           99999876544322  33458999999996

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.78  E-value=1e-18  Score=184.73  Aligned_cols=147  Identities=24%  Similarity=0.358  Sum_probs=115.0

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l  748 (827)
                      ..++|+..+.||+|+||.||+|+.. +++.||||++...  ......++.+|+..+.++ +|||||++++++.+.+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            3467999999999999999999875 7899999998753  233456788999999999 99999999999988776554


Q ss_pred             eeeccCC--------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------------
Q 047196          749 DCLHSTN--------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------------  796 (827)
Q Consensus       749 ~~l~~~~--------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------------  796 (827)
                      ...+...              ..+++.....++.++++||+|||   +.+|+||||||+||+                  
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~  165 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDD  165 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC----------------
T ss_pred             EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCccccccccccc
Confidence            3333221              34677788899999999999996   568999999999987                  


Q ss_pred             -----------eecccccccCCCccccccceecccccccccC
Q 047196          797 -----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                                 |||.++.....     ....||+.|+|||++
T Consensus       166 ~~~~~~~~kl~Dfg~~~~~~~~-----~~~~gt~~y~aPE~~  202 (289)
T 1x8b_A          166 WASNKVMFKIGDLGHVTRISSP-----QVEEGDSRFLANEVL  202 (289)
T ss_dssp             ----CCCEEECCCTTCEETTCS-----CCCCCCGGGCCHHHH
T ss_pred             ccCCceEEEEcccccccccCCc-----cccCCCccccChhHh
Confidence                       55655544322     123489999999963

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.78  E-value=8.3e-19  Score=184.94  Aligned_cols=147  Identities=27%  Similarity=0.392  Sum_probs=113.6

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      .++|+..+.||+|+||.||+|+.. +++.||||++.....   ...+.+.+|++++++++||||+++++++.+....++.
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            467899999999999999999865 578999999864321   2245789999999999999999999999887655443


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+..          ...+++.....++.+++.|++|||   +.+|+||||||+||+          |||++........
T Consensus        88 ~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~  164 (279)
T 3fdn_A           88 LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR  164 (279)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC-----
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcccc
Confidence            32221          134677788899999999999996   678999999999998          9998865433221


Q ss_pred             cccccceeccccccccc
Q 047196          810 MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~  826 (827)
                         ....||+.|+|||+
T Consensus       165 ---~~~~~~~~y~aPE~  178 (279)
T 3fdn_A          165 ---TDLCGTLDYLPPEM  178 (279)
T ss_dssp             ------CCCCTTCCHHH
T ss_pred             ---cccCCCCCccCHhH
Confidence               23458999999996

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=4.9e-19  Score=194.01  Aligned_cols=176  Identities=23%  Similarity=0.211  Sum_probs=94.0

Q ss_pred             cEEEccCCcCccccCccccCCCCCceEeccCcccccccccccc-CCCCCcEEECCCCCCCCCCCccccccccccEEecCC
Q 047196          383 ENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFG-RLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAG  461 (827)
Q Consensus       383 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  461 (827)
                      +.+++++++++. +|..+.  +.++.|+|++|++++..+..|. ++++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            445555555553 343322  3355556666655555555554 555566666665655554455555555566666666


Q ss_pred             CcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccc---cccccCceEEcccceeee
Q 047196          462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDI---GNLRVVIGINLSRNNFSG  538 (827)
Q Consensus       462 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g  538 (827)
                      |++++..+..|.++++|++|+|++|.+++..|..|.++++|+.|+|++|++++..+..+   ..++.|+.|||++|+|++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            65555444455555556666666665555555555555555555555555554333333   345555555555555554


Q ss_pred             cccccccCCCC--CCEEECCCCcce
Q 047196          539 DIPSTIGDLKD--LQNISLACNGLE  561 (827)
Q Consensus       539 ~ip~~~~~l~~--L~~L~Ls~N~l~  561 (827)
                      ..+..+..++.  ++.|+|++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            44444555444  245555555543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.77  E-value=6.9e-19  Score=190.65  Aligned_cols=151  Identities=25%  Similarity=0.428  Sum_probs=116.2

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CC-----cEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DG-----IEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g-----~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      ..++|...+.||+|+||.||+|+.. ++     ..||||++.... ....+.+.+|+++++++ +|||||++++++...+
T Consensus        44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  123 (333)
T 2i1m_A           44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG  123 (333)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence            3467888899999999999999864 23     479999997543 34557799999999999 8999999999998766


Q ss_pred             ceeeeeeccC------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----
Q 047196          745 FKALDCLHST------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----  796 (827)
Q Consensus       745 ~~~l~~l~~~------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----  796 (827)
                      ..++...+..                        ...+++.....++.++++||+|||   +.+|+||||||+||+    
T Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~  200 (333)
T 2i1m_A          124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNG  200 (333)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGG
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCC
Confidence            5444222211                        123567778899999999999996   568999999999998    


Q ss_pred             ------eecccccccCCCccc-cccceeccccccccc
Q 047196          797 ------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       797 ------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                            |||+++......... .....||++|+|||+
T Consensus       201 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  237 (333)
T 2i1m_A          201 HVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPES  237 (333)
T ss_dssp             GEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHH
T ss_pred             CeEEECccccccccccccceeecCCCCCCccccCHHH
Confidence                  999998765443221 223447899999996

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.77  E-value=6.8e-19  Score=188.10  Aligned_cols=148  Identities=28%  Similarity=0.403  Sum_probs=114.2

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||||++........+.+.+|++++++++||||+++++++......++...+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            457888999999999999999865 6899999999765444456789999999999999999999999877655443322


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCCc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~~  809 (827)
                      ..          ...+++.....++.++++|++|||   +.+|+||||||+||+             |||+++...... 
T Consensus        88 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~-  163 (304)
T 2jam_A           88 VSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI-  163 (304)
T ss_dssp             CCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBT-
T ss_pred             CCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCc-
Confidence            22          134567778889999999999996   568999999999987             899887543221 


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                        .....||++|+|||++
T Consensus       164 --~~~~~~~~~y~aPE~~  179 (304)
T 2jam_A          164 --MSTACGTPGYVAPEVL  179 (304)
T ss_dssp             --THHHHSCCCBCCTTTB
T ss_pred             --cccccCCCCccChHHh
Confidence              1223589999999974

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.77  E-value=3.7e-19  Score=197.37  Aligned_cols=144  Identities=26%  Similarity=0.412  Sum_probs=111.1

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc------e--
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF------K--  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~------~--  746 (827)
                      .+|...++||+|+||.||+|+...+..||||++.....    ...+|+++++.++|||||++++++.....      .  
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence            46888999999999999999987767799998854322    22479999999999999999999854321      2  


Q ss_pred             eeeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccc
Q 047196          747 ALDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLL  804 (827)
Q Consensus       747 ~l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~  804 (827)
                      +++++..           ....+.+.....++.|+++||+|||   +.+|+||||||+||+           |||+|+..
T Consensus       116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~  192 (394)
T 4e7w_A          116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL  192 (394)
T ss_dssp             EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccc
Confidence            2233221           1345677778889999999999996   568999999999998           99999876


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....  ....+||++|+|||++
T Consensus       193 ~~~~~--~~~~~~t~~y~aPE~~  213 (394)
T 4e7w_A          193 IAGEP--NVSYICSRYYRAPELI  213 (394)
T ss_dssp             CTTCC--CCSSCSCGGGCCHHHH
T ss_pred             cCCCC--CcccccCcCccCHHHH
Confidence            44332  2334689999999963

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.77  E-value=1.3e-18  Score=182.93  Aligned_cols=151  Identities=22%  Similarity=0.325  Sum_probs=119.0

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+....++...
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            467889999999999999999875 68999999986432 3345789999999999999999999999987765444222


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-  810 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-  810 (827)
                      +.          ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++........ 
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  162 (276)
T 2yex_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER  162 (276)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEEC
T ss_pred             ecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchh
Confidence            21          1234678888999999999999996   568999999999998          99999876433221 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      ......||+.|+|||++
T Consensus       163 ~~~~~~~~~~y~aPE~~  179 (276)
T 2yex_A          163 LLNKMCGTLPYVAPELL  179 (276)
T ss_dssp             CBCCCCSCGGGCCGGGG
T ss_pred             cccCCccccCccChHHH
Confidence            12234589999999974

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.77  E-value=6.5e-19  Score=198.92  Aligned_cols=144  Identities=28%  Similarity=0.435  Sum_probs=111.8

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-cee--eee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FKA--LDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~~--l~~  750 (827)
                      .++|...+.||+|+||.||+|++. |+.||||+++...  ..+.|.+|++++++++|||||+++++|...+ ..+  +++
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~  268 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY  268 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred             hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence            356888899999999999999876 7899999997543  4567999999999999999999999987654 223  333


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +...          ...+++.....++.++++||+|||   +.+|+||||||+|||          |||+++......  
T Consensus       269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~--  343 (450)
T 1k9a_A          269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ--  343 (450)
T ss_dssp             CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc--
Confidence            3221          112577788899999999999996   568999999999998          999998543221  


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ....+|+.|+|||++
T Consensus       344 --~~~~~~~~y~aPE~~  358 (450)
T 1k9a_A          344 --DTGKLPVKWTAPEAL  358 (450)
T ss_dssp             -----CCCTTTSCHHHH
T ss_pred             --cCCCCCcceeCHHHh
Confidence              122478899999963

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.4e-18  Score=176.35  Aligned_cols=151  Identities=25%  Similarity=0.324  Sum_probs=79.9

Q ss_pred             cEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCC
Q 047196          383 ENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGN  462 (827)
Q Consensus       383 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  462 (827)
                      +.+++++++++ .+|..+.  ++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45666666666 3444332  45666666666666555555666666666666666666555555555555555555555


Q ss_pred             cccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEccccee
Q 047196          463 KFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNF  536 (827)
Q Consensus       463 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  536 (827)
                      +++...+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..++.|+.|++++|.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            55543333345555555555555555554444444444444444444444443333333333333344443333

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.77  E-value=1e-18  Score=188.79  Aligned_cols=149  Identities=27%  Similarity=0.432  Sum_probs=116.5

Q ss_pred             hcccccceEecCCceEEEEEEe-----cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC----c
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-----HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED----F  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~----~  745 (827)
                      ++|+..+.||+|+||.||+|++     .+|+.||||++........+.+.+|++++++++|||||++++++...+    +
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  120 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK  120 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence            4678889999999999999984     368999999998766666778999999999999999999999886543    2


Q ss_pred             eeeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          746 KALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       746 ~~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .++++...         ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++....
T Consensus       121 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~  197 (326)
T 2w1i_A          121 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ  197 (326)
T ss_dssp             EEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCS
T ss_pred             EEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhccc
Confidence            23333321         1234778888999999999999996   568999999999998          9999987754


Q ss_pred             CCccc--cccceeccccccccc
Q 047196          807 DRSMI--QTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~~~--~~~~~gt~~Y~APE~  826 (827)
                      .....  .....++..|+|||+
T Consensus       198 ~~~~~~~~~~~~~~~~y~aPE~  219 (326)
T 2w1i_A          198 DKEYYKVKEPGESPIFWYAPES  219 (326)
T ss_dssp             SCSEEECSSCCSCCGGGCCHHH
T ss_pred             cccccccccCCCCceeEECchh
Confidence            43221  122336888999996

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.5e-18  Score=176.04  Aligned_cols=153  Identities=23%  Similarity=0.279  Sum_probs=107.4

Q ss_pred             ceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCC
Q 047196          407 LLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSN  486 (827)
Q Consensus       407 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  486 (827)
                      +.+++++|.++. +|..+.  ++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            466777777763 444433  56777777777777665666777777777777777777666777777777777777777


Q ss_pred             cccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCccee
Q 047196          487 RLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEG  562 (827)
Q Consensus       487 ~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  562 (827)
                      .+++..+..|.++++|+.|+|++|++++..|..+..++.|+.|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            7776666666777777777777777777767777777777777777777776666667777777777777777654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.77  E-value=5.7e-19  Score=189.77  Aligned_cols=150  Identities=25%  Similarity=0.334  Sum_probs=111.2

Q ss_pred             hcccc-cceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSK-ENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~-~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      +.|.. .++||+|+||.||+|+. .+|+.||||++........+.+.+|++++.++ +|||||++++++...+..++...
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            34665 37899999999999985 46899999999765444567789999999995 79999999999988775554333


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCC
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDR  808 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~  808 (827)
                      +..          ...+++.....++.++++||+|||   +.+|+||||||+||+             |||+++......
T Consensus        92 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~  168 (316)
T 2ac3_A           92 KMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNG  168 (316)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC------
T ss_pred             cCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCC
Confidence            322          134677778889999999999996   468999999999998             899887654221


Q ss_pred             cc------ccccceecccccccccC
Q 047196          809 SM------IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~------~~~~~~gt~~Y~APE~l  827 (827)
                      ..      .....+||+.|+|||++
T Consensus       169 ~~~~~~~~~~~~~~gt~~y~aPE~~  193 (316)
T 2ac3_A          169 DCSPISTPELLTPCGSAEYMAPEVV  193 (316)
T ss_dssp             -------------CCSGGGCCHHHH
T ss_pred             ccccccccccccccCCcCccChHHh
Confidence            10      11223489999999963

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.77  E-value=2.9e-19  Score=191.78  Aligned_cols=157  Identities=19%  Similarity=0.316  Sum_probs=117.9

Q ss_pred             hhHHHHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcC--CCCceEEEeeeec
Q 047196          667 YQDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIR--HRNHVKRISSCSN  742 (827)
Q Consensus       667 ~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~--H~niv~~~~~~~~  742 (827)
                      ++.+....++|...+.||+|+||.||+|+..+|+.||||++...  .....+.+.+|++++++++  |+|++++++++..
T Consensus        20 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~   99 (313)
T 3cek_A           20 FQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT   99 (313)
T ss_dssp             CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC
T ss_pred             eeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeec
Confidence            33333445679999999999999999999888999999998643  3445678999999999998  4999999999988


Q ss_pred             CCceeeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccc
Q 047196          743 EDFKALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLL  804 (827)
Q Consensus       743 ~~~~~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~  804 (827)
                      ....++.....         ....+++..+..++.++++||+|||   +.+|+||||||+||+         |||+++..
T Consensus       100 ~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~kL~Dfg~~~~~  176 (313)
T 3cek_A          100 DQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVDGMLKLIDFGIANQM  176 (313)
T ss_dssp             SSEEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTEEEECCCSSSCC-
T ss_pred             CCEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEECCeEEEeeccccccc
Confidence            77654432221         1235677888899999999999996   568999999999998         99999876


Q ss_pred             cCCCccc-cccceeccccccccc
Q 047196          805 TGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       805 ~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                      ....... .....||+.|+|||+
T Consensus       177 ~~~~~~~~~~~~~gt~~y~aPE~  199 (313)
T 3cek_A          177 QPDTTSVVKDSQVGTVNYMPPEA  199 (313)
T ss_dssp             -------------CCGGGCCHHH
T ss_pred             cCccccccccCCCCCCCcCCHHH
Confidence            5433221 223458999999996

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.3e-18  Score=184.46  Aligned_cols=168  Identities=29%  Similarity=0.398  Sum_probs=116.7

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|+.|++++|.++.. + .+..+++|+.|++++|++++..+  +..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence            566677777766643 3 36667777777777777776544  6777777777777777764 23 36677777777777


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++.  +.+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..|  +..++.|+.|++++|+|++ +
T Consensus       121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l  193 (291)
T 1h6t_A          121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L  193 (291)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C
T ss_pred             CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-C
Confidence            7777642  3566777777777777777764  456777777777777777776554  6777777777777777775 3


Q ss_pred             cccccCCCCCCEEECCCCccee
Q 047196          541 PSTIGDLKDLQNISLACNGLEG  562 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g  562 (827)
                      | .+..+++|+.|++++|+++.
T Consensus       194 ~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          194 R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             h-hhccCCCCCEEECcCCcccC
Confidence            3 37777777777777777765

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.77  E-value=3e-19  Score=209.02  Aligned_cols=143  Identities=24%  Similarity=0.456  Sum_probs=106.9

Q ss_pred             eEecCCceEEEEEEec---CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeeecc---
Q 047196          682 LIGVGSFGSVYKGRLH---DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCLHS---  753 (827)
Q Consensus       682 ~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l~~---  753 (827)
                      .||+|+||.||+|.++   ++..||||+++... ....++|.+|++++++++|||||+++++|..+... +++++..   
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~L  422 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPL  422 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCBH
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCcH
Confidence            7999999999999764   46789999997543 33467899999999999999999999999765432 2232221   


Q ss_pred             ------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc--ccc
Q 047196          754 ------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ--TET  815 (827)
Q Consensus       754 ------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~--~~~  815 (827)
                            ....+++.+...++.++++||+|||   +.+|+||||||+|||          |||+|+..........  ...
T Consensus       423 ~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~  499 (613)
T 2ozo_A          423 HKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAG  499 (613)
T ss_dssp             HHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC------------
T ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCC
Confidence                  2345788889999999999999996   568999999999998          9999987654332211  122


Q ss_pred             eecccccccccC
Q 047196          816 LVTIGYMAPGLL  827 (827)
Q Consensus       816 ~gt~~Y~APE~l  827 (827)
                      .+|+.|||||++
T Consensus       500 ~~~~~y~APE~~  511 (613)
T 2ozo_A          500 KWPLKWYAPECI  511 (613)
T ss_dssp             --CCTTSCHHHH
T ss_pred             CCccceeCHhhh
Confidence            357899999974

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.77  E-value=1.2e-18  Score=189.02  Aligned_cols=151  Identities=27%  Similarity=0.404  Sum_probs=110.1

Q ss_pred             HhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhc--CCCCceEEEeeeecC----Cce
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI--RHRNHVKRISSCSNE----DFK  746 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l--~H~niv~~~~~~~~~----~~~  746 (827)
                      ..++|+..+.||+|+||.||+|+.. |+.||||++....   ...+.+|.+++...  +|||||++++++...    ...
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  110 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL  110 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred             cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence            3467999999999999999999876 8899999986432   23345555555554  999999999998776    333


Q ss_pred             ee--eeeccC-------CCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEccCCCccee----------eecccc
Q 047196          747 AL--DCLHST-------NCSLNIFDKLNIMIDVASALEYLHFS-----HSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       747 ~l--~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~Lh~~-----h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                      ++  ++....       ...+.+.....++.+++.||+|||..     |.++|+||||||+||+          |||+|+
T Consensus       111 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~  190 (337)
T 3mdy_A          111 YLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  190 (337)
T ss_dssp             EEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCce
Confidence            33  322211       13467778889999999999999853     3559999999999998          999997


Q ss_pred             cccCCCccc---cccceecccccccccC
Q 047196          803 LLTGDRSMI---QTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~---~~~~~gt~~Y~APE~l  827 (827)
                      .........   .....||++|+|||++
T Consensus       191 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~  218 (337)
T 3mdy_A          191 KFISDTNEVDIPPNTRVGTKRYMPPEVL  218 (337)
T ss_dssp             ECC---------CCSSCSCGGGCCHHHH
T ss_pred             eeccccccccCCCCCCccCcceeChhhc
Confidence            764433221   1234589999999963

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.77  E-value=1.1e-18  Score=184.15  Aligned_cols=147  Identities=25%  Similarity=0.390  Sum_probs=114.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch------HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA------MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++.....      ...+.+.+|++++++++||||+++++++......+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            56888999999999999999875 689999999865321      13567999999999999999999999998876554


Q ss_pred             eeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eeccccc
Q 047196          748 LDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRL  803 (827)
Q Consensus       748 l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~~  803 (827)
                      +...+..          ...+++.+...++.++++||+|||   +.+|+||||||+||+              |||+++.
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~  161 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHK  161 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEeccccee
Confidence            4333221          234677888899999999999996   568999999999997              8888876


Q ss_pred             ccCCCccccccceeccccccccc
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ......  .....||+.|+|||+
T Consensus       162 ~~~~~~--~~~~~~~~~y~aPE~  182 (283)
T 3bhy_A          162 IEAGNE--FKNIFGTPEFVAPEI  182 (283)
T ss_dssp             CC----------CCCGGGCCHHH
T ss_pred             ccCCCc--ccccCCCcCccCcce
Confidence            543322  123458999999996

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.77  E-value=1.4e-18  Score=187.89  Aligned_cols=144  Identities=22%  Similarity=0.385  Sum_probs=114.0

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecC--Cceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNE--DFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~--~~~~l~~  750 (827)
                      ++|+..+.||+|+||.||+|+. .+++.||||++....   .+.+.+|++++++++ ||||+++++++...  ...++..
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~  112 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  112 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence            5788899999999999999986 578999999986443   356889999999998 99999999999873  3333322


Q ss_pred             eccCC-------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCcccc
Q 047196          751 LHSTN-------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       751 l~~~~-------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~~~  812 (827)
                      .+...       ..+...+...++.++++||+|||   +.+|+||||||+||+           |||+|+.......  .
T Consensus       113 e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~  187 (330)
T 3nsz_A          113 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE--Y  187 (330)
T ss_dssp             ECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC--C
T ss_pred             eccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc--c
Confidence            22221       23667778899999999999996   568999999999998           9999987654332  2


Q ss_pred             ccceeccccccccc
Q 047196          813 TETLVTIGYMAPGL  826 (827)
Q Consensus       813 ~~~~gt~~Y~APE~  826 (827)
                      ....||+.|+|||+
T Consensus       188 ~~~~~~~~y~aPE~  201 (330)
T 3nsz_A          188 NVRVASRYFKGPEL  201 (330)
T ss_dssp             CSCCSCGGGCCHHH
T ss_pred             ccccccccccChhh
Confidence            23458999999996

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.77  E-value=7.6e-19  Score=190.21  Aligned_cols=148  Identities=30%  Similarity=0.444  Sum_probs=113.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|||||++++++......++...
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence            57888999999999999999875 58999999985432  3345678899999999999999999999988775444222


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +.          ....+++.....++.++++|++|||   +.+|+||||||+||+          |||+++........ 
T Consensus       105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-  180 (331)
T 4aaa_A          105 FVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV-  180 (331)
T ss_dssp             CCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC----------
T ss_pred             cCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccc-
Confidence            21          1345778888999999999999996   568999999999998          99999876543322 


Q ss_pred             cccceeccccccccc
Q 047196          812 QTETLVTIGYMAPGL  826 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~  826 (827)
                      .....||++|+|||+
T Consensus       181 ~~~~~~t~~y~aPE~  195 (331)
T 4aaa_A          181 YDDEVATRWYRAPEL  195 (331)
T ss_dssp             ---CCCCCTTCCHHH
T ss_pred             cCCCcCCccccCccc
Confidence            223458999999996

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.77  E-value=1.9e-19  Score=194.47  Aligned_cols=149  Identities=27%  Similarity=0.451  Sum_probs=106.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcE----EEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIE----VAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~----vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ++|+..+.||+|+||.||+|+.. +++.    ||+|.+... .....+++.+|++++++++|||||++++++......++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~v   94 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   94 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceEE
Confidence            56888999999999999999864 4543    577777543 23345789999999999999999999999987664332


Q ss_pred             -eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +++.         .....+.+.....++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus        95 ~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~  171 (327)
T 3lzb_A           95 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             ECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC--------
T ss_pred             EEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCcc
Confidence             2111         12345677888999999999999996   568999999999998          999998765433


Q ss_pred             ccc-cccceeccccccccc
Q 047196          809 SMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~~-~~~~~gt~~Y~APE~  826 (827)
                      ... .....+|+.|+|||+
T Consensus       172 ~~~~~~~~~~t~~y~aPE~  190 (327)
T 3lzb_A          172 KEYHAEGGKVPIKWMALES  190 (327)
T ss_dssp             --------CCCGGGSCHHH
T ss_pred             ccccccCCCccccccCHHH
Confidence            221 122336889999996

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.77  E-value=2.6e-19  Score=199.54  Aligned_cols=147  Identities=26%  Similarity=0.364  Sum_probs=99.2

Q ss_pred             cccc-cceEecCCceEEEEEEec---CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeec--CCceee-
Q 047196          676 KFSK-ENLIGVGSFGSVYKGRLH---DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN--EDFKAL-  748 (827)
Q Consensus       676 ~~~~-~~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~--~~~~~l-  748 (827)
                      .|+. .++||+|+||.||+|+..   +++.||||++....  ..+.+.+|++++++++|||||++++++..  ....++ 
T Consensus        21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv   98 (405)
T 3rgf_A           21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL   98 (405)
T ss_dssp             HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEE
T ss_pred             hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEE
Confidence            3554 458999999999999865   57889999986542  23467899999999999999999999854  333332 


Q ss_pred             -eeeccC----------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------e
Q 047196          749 -DCLHST----------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------D  797 (827)
Q Consensus       749 -~~l~~~----------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------D  797 (827)
                       ++....                ...+.+.....|+.+++.||+|||   +.+|+||||||+|||              |
T Consensus        99 ~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~D  175 (405)
T 3rgf_A           99 FDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIAD  175 (405)
T ss_dssp             EECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEECC
T ss_pred             EeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEEEE
Confidence             222110                113677778899999999999996   567999999999997              9


Q ss_pred             ecccccccCCCcc--ccccceecccccccccC
Q 047196          798 FGIGRLLTGDRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       798 FGla~~~~~~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ||+|+........  .....+||++|+|||++
T Consensus       176 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (405)
T 3rgf_A          176 MGFARLFNSPLKPLADLDPVVVTFWYRAPELL  207 (405)
T ss_dssp             TTCCC----------------CCCTTCCHHHH
T ss_pred             CCCceecCCCCcccccCCCceecCcccCchhh
Confidence            9999876533211  12334589999999963

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1e-18  Score=191.42  Aligned_cols=159  Identities=23%  Similarity=0.194  Sum_probs=126.4

Q ss_pred             cccEEEccCCcCccccCcccc-CCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEec
Q 047196          381 SLENIYISNCNIGGSIPQLIS-NLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  459 (827)
                      .++.|+|++|++++..+..+. ++++|+.|+|++|+|++..|..|.++++|++|+|++|++++..+..|.++++|+.|+|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            577788888888877777776 7888888888888888777777888888888888888888766777888888888888


Q ss_pred             CCCcccccCCccccCCCCCCccccCCCcccccCCccc---cccccccccCCCCCCCCCCCccccccccc--CceEEcccc
Q 047196          460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTF---WNLKDILFFDLSSNSLDGPLSLDIGNLRV--VIGINLSRN  534 (827)
Q Consensus       460 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~g~~p~~~~~l~~--L~~L~Ls~N  534 (827)
                      ++|++++..|..|..+++|+.|+|++|.+++..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.|+|++|
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            8888887778888888888888888888887555555   56788888888888888766667777766  377889998


Q ss_pred             eeeec
Q 047196          535 NFSGD  539 (827)
Q Consensus       535 ~l~g~  539 (827)
                      .+...
T Consensus       200 ~~~C~  204 (361)
T 2xot_A          200 PLECD  204 (361)
T ss_dssp             CEECC
T ss_pred             CccCC
Confidence            88753

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=186.33  Aligned_cols=150  Identities=19%  Similarity=0.331  Sum_probs=115.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc----hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC----AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~----~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~  746 (827)
                      .++|...+.||+|+||.||+|+.. +++.||||++....    ....+.+.+|++++++++||||+++++++...+  ..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            367999999999999999999864 68999999996532    234567999999999999999999999985432  22


Q ss_pred             --eeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          747 --ALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       747 --~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                        ++++...         ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++...
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~  160 (305)
T 2wtk_C           84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEALH  160 (305)
T ss_dssp             EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccccccC
Confidence              2333221         1345778888999999999999996   568999999999998          999998764


Q ss_pred             CCCcc-ccccceeccccccccc
Q 047196          806 GDRSM-IQTETLVTIGYMAPGL  826 (827)
Q Consensus       806 ~~~~~-~~~~~~gt~~Y~APE~  826 (827)
                      ..... ......||+.|+|||+
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~  182 (305)
T 2wtk_C          161 PFAADDTCRTSQGSPAFQPPEI  182 (305)
T ss_dssp             TTCSSCEECCCCSCGGGCCHHH
T ss_pred             ccccccccccCCCCCCCcChhh
Confidence            32221 1223458999999996

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.77  E-value=6.9e-19  Score=189.20  Aligned_cols=150  Identities=23%  Similarity=0.255  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecC----Cc--ee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNE----DF--KA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~----~~--~~  747 (827)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++++++|||||++++++...    ..  .+
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  108 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLL  108 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEE
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEE
Confidence            5788999999999999999986 57899999998766666677899999999999999999999998632    11  22


Q ss_pred             eeeecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          748 LDCLHS------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       748 l~~l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      +++...            ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++...
T Consensus       109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~  185 (317)
T 2buj_A          109 LPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQAC  185 (317)
T ss_dssp             EECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEESC
T ss_pred             EEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhcc
Confidence            232221            1245778888999999999999996   458999999999998          999887643


Q ss_pred             CCCccc--------cccceecccccccccC
Q 047196          806 GDRSMI--------QTETLVTIGYMAPGLL  827 (827)
Q Consensus       806 ~~~~~~--------~~~~~gt~~Y~APE~l  827 (827)
                      ......        .....||+.|+|||++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  215 (317)
T 2buj_A          186 IHVEGSRQALTLQDWAAQRCTISYRAPELF  215 (317)
T ss_dssp             EEEESHHHHHHHHHHHHHHSCGGGCCGGGS
T ss_pred             cccccccccccccccccccCCcccCCHhHh
Confidence            211100        0123379999999974

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.77  E-value=6.7e-19  Score=193.81  Aligned_cols=146  Identities=25%  Similarity=0.382  Sum_probs=112.7

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----  745 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||||++...  .....+++.+|++++++++|||||++++++...+.     
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            357888899999999999999864 6899999999753  23345788999999999999999999999876542     


Q ss_pred             ---eeeeeecc-----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          746 ---KALDCLHS-----TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       746 ---~~l~~l~~-----~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                         ..++++..     ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++.....
T Consensus       121 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~  197 (371)
T 4exu_A          121 DFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE  197 (371)
T ss_dssp             CCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC------
T ss_pred             eEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccccccC
Confidence               23333221     1234788888999999999999996   568999999999998          99999865432


Q ss_pred             Cccccccceeccccccccc
Q 047196          808 RSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~  826 (827)
                      .    ...+||++|+|||+
T Consensus       198 ~----~~~~~t~~y~aPE~  212 (371)
T 4exu_A          198 M----TGYVVTRWYRAPEV  212 (371)
T ss_dssp             ------CTTCCCTTSCHHH
T ss_pred             c----CCcccCccccCHHH
Confidence            1    23458999999996

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=185.04  Aligned_cols=148  Identities=26%  Similarity=0.397  Sum_probs=111.7

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeeccC
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHST  754 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~~  754 (827)
                      +|....+||+|+||.||+|+. .+++.||||++........+.+.+|++++++++|||||++++++...+..++...+..
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  102 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP  102 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence            345556899999999999986 4689999999976655556789999999999999999999999987765444222211


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCcc
Q 047196          755 -------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       755 -------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~  810 (827)
                                   .....+.....++.++++||+|||   +.+|+||||||+||+           |||+++........
T Consensus       103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~  179 (295)
T 2clq_A          103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC  179 (295)
T ss_dssp             EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred             CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCc
Confidence                         123456667789999999999996   568999999999998           89998766433221


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....||++|+|||++
T Consensus       180 -~~~~~~~~~y~aPE~~  195 (295)
T 2clq_A          180 -TETFTGTLQYMAPEII  195 (295)
T ss_dssp             --CCCCCCGGGCCHHHH
T ss_pred             -ccccCCCccccChhhh
Confidence             1234589999999963

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.77  E-value=5.9e-19  Score=189.53  Aligned_cols=156  Identities=21%  Similarity=0.371  Sum_probs=117.7

Q ss_pred             HHHHHhhcccccceEecCCceEEEEEEe------cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeee
Q 047196          669 DLFRATEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSC  740 (827)
Q Consensus       669 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~  740 (827)
                      +.....++|...+.||+|+||.||+|+.      .+++.||||++.... ....+.+.+|+++++++ +|||||++++++
T Consensus        21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  100 (316)
T 2xir_A           21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC  100 (316)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEE
Confidence            3333457899999999999999999974      246889999997643 33456799999999999 689999999998


Q ss_pred             ecCCc-e--eeeeecc---------CC---------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCc
Q 047196          741 SNEDF-K--ALDCLHS---------TN---------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPK  793 (827)
Q Consensus       741 ~~~~~-~--~l~~l~~---------~~---------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~  793 (827)
                      ...+. .  ++++...         ..               ..+++.....++.++++||+|||   +.+|+||||||+
T Consensus       101 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~  177 (316)
T 2xir_A          101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAAR  177 (316)
T ss_dssp             CCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGG
T ss_pred             ecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccc
Confidence            76542 2  2232221         01               11567788899999999999996   568999999999


Q ss_pred             cee----------eecccccccCCCccc-cccceecccccccccC
Q 047196          794 NVF----------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       794 NIl----------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ||+          |||+++......... .....||++|+|||++
T Consensus       178 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  222 (316)
T 2xir_A          178 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI  222 (316)
T ss_dssp             GEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH
T ss_pred             eEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhh
Confidence            998          999998765443322 2234589999999963

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.77  E-value=1.5e-18  Score=189.66  Aligned_cols=150  Identities=24%  Similarity=0.336  Sum_probs=114.0

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-----ce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-----FK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-----~~  746 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||||++... ......++.+|++++++++|||||++++++....     ..
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            367888999999999999999865 6899999999643 3344567889999999999999999999886542     22


Q ss_pred             e--eeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          747 A--LDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       747 ~--l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      +  +++...      ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus        90 ~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~  166 (353)
T 2b9h_A           90 YIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESA  166 (353)
T ss_dssp             EEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred             EEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEeccccccccccc
Confidence            2  222211      1234677888899999999999996   568999999999998          999998764322


Q ss_pred             cc---------ccccceeccccccccc
Q 047196          809 SM---------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~---------~~~~~~gt~~Y~APE~  826 (827)
                      ..         .....+||+.|+|||+
T Consensus       167 ~~~~~~~~~~~~~~~~~gt~~y~aPE~  193 (353)
T 2b9h_A          167 ADNSEPTGQQSGMVEFVATRWYRAPEV  193 (353)
T ss_dssp             -------------CCCCCCGGGCCHHH
T ss_pred             ccccCccccccchhhccccccccCCee
Confidence            11         0122358999999996

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.76  E-value=1.9e-18  Score=187.29  Aligned_cols=152  Identities=23%  Similarity=0.306  Sum_probs=104.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecC-------C-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNE-------D-  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~-------~-  744 (827)
                      .+|...++||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++ |||||++++++...       . 
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence            47888999999999999999864 68999999987666666778999999999996 99999999998421       1 


Q ss_pred             --ceeeeeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          745 --FKALDCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       745 --~~~l~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                        +.++++...          ....+++.+...++.++++||+|||. +.++|+||||||+||+          |||+++
T Consensus       108 ~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~-~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  186 (337)
T 3ll6_A          108 EFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSAT  186 (337)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT-SSSCCBCCCCCGGGCEECTTSCEEBCCCTTCB
T ss_pred             eEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-CCCCEEEccCCcccEEECCCCCEEEecCccce
Confidence              112222211          12457888899999999999999973 2234999999999998          999998


Q ss_pred             cccCCCccc-----------cccceecccccccccC
Q 047196          803 LLTGDRSMI-----------QTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~-----------~~~~~gt~~Y~APE~l  827 (827)
                      .........           .....||+.|+|||++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  222 (337)
T 3ll6_A          187 TISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII  222 (337)
T ss_dssp             CCSSCC------------------------------
T ss_pred             eccccCcccccccccccchhhccccCCCCcCChhhh
Confidence            765432210           1123489999999974

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.76  E-value=1e-18  Score=187.96  Aligned_cols=149  Identities=27%  Similarity=0.364  Sum_probs=109.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecC----------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNE----------  743 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~----------  743 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++........+++.+|++++++++|||+|++++++...          
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            56888899999999999999875 5899999999776666678899999999999999999999987432          


Q ss_pred             ----Ccee--eeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecc
Q 047196          744 ----DFKA--LDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGI  800 (827)
Q Consensus       744 ----~~~~--l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGl  800 (827)
                          ...+  +++...      ....+.+.....++.++++||+|||   +.+|+||||||+||+           |||+
T Consensus        91 ~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~  167 (320)
T 2i6l_A           91 LTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGL  167 (320)
T ss_dssp             CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             ccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEccCcc
Confidence                2222  222221      1234677788899999999999996   568999999999998           9999


Q ss_pred             cccccCCCcc--ccccceeccccccccc
Q 047196          801 GRLLTGDRSM--IQTETLVTIGYMAPGL  826 (827)
Q Consensus       801 a~~~~~~~~~--~~~~~~gt~~Y~APE~  826 (827)
                      ++........  ......+|..|+|||+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~  195 (320)
T 2i6l_A          168 ARIMDPHYSHKGHLSEGLVTKWYRSPRL  195 (320)
T ss_dssp             CBCC--------CCCGGGSCCTTCCHHH
T ss_pred             ccccCCCcccccccccccccccccCcHH
Confidence            9876432211  1122347999999996

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.76  E-value=4.1e-19  Score=194.93  Aligned_cols=147  Identities=24%  Similarity=0.416  Sum_probs=101.6

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecC------C
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNE------D  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~------~  744 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++...  .....+++.+|++++++++|||||++++++...      .
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            36788899999999999999985 46899999998643  234557789999999999999999999988643      1


Q ss_pred             --ceeeeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 --FKALDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 --~~~l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                        +.++++...      ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+|+....
T Consensus       108 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~  184 (367)
T 2fst_X          108 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTAD  184 (367)
T ss_dssp             CCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC---------
T ss_pred             eEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeeccccccccc
Confidence              112222111      1235778888999999999999996   568999999999998          9999987543


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .    .+..+||++|+|||++
T Consensus       185 ~----~~~~~~t~~y~aPE~~  201 (367)
T 2fst_X          185 E----MTGYVATRWYRAPEIM  201 (367)
T ss_dssp             ----------CCCTTCCHHHH
T ss_pred             c----CCCcCcCcCccChHHH
Confidence            2    1334689999999963

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.76  E-value=8.7e-19  Score=189.89  Aligned_cols=150  Identities=24%  Similarity=0.437  Sum_probs=108.6

Q ss_pred             hcccccceEecCCceEEEEEEecC-----CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-----GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .+|...+.||+|+||.||+|+...     +..||||++.... ......+.+|++++++++|||||++++++...+..++
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            356667899999999999998642     3469999997543 3445679999999999999999999999987665444


Q ss_pred             eeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          749 DCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       749 ~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      ...+.           ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++.....
T Consensus       124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~  200 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  200 (333)
T ss_dssp             EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred             EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhccc
Confidence            22221           2245788889999999999999996   568999999999998          99999876543


Q ss_pred             Cccc--cccceecccccccccC
Q 047196          808 RSMI--QTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~--~~~~~gt~~Y~APE~l  827 (827)
                      ....  .....+|+.|+|||++
T Consensus       201 ~~~~~~~~~~~~~~~y~aPE~~  222 (333)
T 1mqb_A          201 PEATYTTSGGKIPIRWTAPEAI  222 (333)
T ss_dssp             ----------CCCGGGSCHHHH
T ss_pred             cccccccCCCCccccccCchhc
Confidence            2211  1122368899999963

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.76  E-value=6.8e-19  Score=208.01  Aligned_cols=150  Identities=21%  Similarity=0.189  Sum_probs=117.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l  748 (827)
                      .++|+..++||+|+||.||+|+.. +++.||||++....   ....+.+.+|.+++..+ +|++|+++.+++...+..++
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l  419 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF  419 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence            467899999999999999999865 68899999997532   22345788899999987 69999999999887765544


Q ss_pred             eeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ...+...          ..+++.....++.+++.||+|||   +.+|+||||||+|||          |||+|+......
T Consensus       420 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~  496 (674)
T 3pfq_A          420 VMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG  496 (674)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTT
T ss_pred             EEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccccCC
Confidence            3333221          35677788899999999999996   568999999999998          999998654333


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .. ....+||++|||||++
T Consensus       497 ~~-~~~~~GT~~Y~APE~l  514 (674)
T 3pfq_A          497 VT-TKTFCGTPDYIAPEII  514 (674)
T ss_dssp             CC-BCCCCSCSSSCCHHHH
T ss_pred             cc-cccccCCCcccCHhhh
Confidence            22 2335699999999974

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.9e-18  Score=200.91  Aligned_cols=171  Identities=25%  Similarity=0.369  Sum_probs=79.5

Q ss_pred             CCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCc
Q 047196          314 SLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIG  393 (827)
Q Consensus       314 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~  393 (827)
                      .+++|+.|++++|.+... | .+..+++|+.|+|++|.+++..|                 +..+. +|+.|+|++|+++
T Consensus        41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-----------------l~~l~-~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-----------------LTNLK-NLGWLFLDENKIK  100 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-----------------GGGCT-TCCEEECCSSCCC
T ss_pred             cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-----------------hccCC-CCCEEECcCCCCC
Confidence            345556666666655432 2 34555555555555555443211                 12222 4555555555554


Q ss_pred             cccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCcccc
Q 047196          394 GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLG  473 (827)
Q Consensus       394 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  473 (827)
                      + +| .+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++..|  +.
T Consensus       101 ~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~  172 (605)
T 1m9s_A          101 D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA  172 (605)
T ss_dssp             C-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred             C-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence            3 12 344445555555555555432  2344445555555555555432  334444445555555555444333  44


Q ss_pred             CCCCCCccccCCCcccccCCccccccccccccCCCCCCCCC
Q 047196          474 NLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDG  514 (827)
Q Consensus       474 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  514 (827)
                      .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++
T Consensus       173 ~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            444445555554444442  124444444444444444443

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.76  E-value=2.6e-18  Score=184.90  Aligned_cols=148  Identities=21%  Similarity=0.391  Sum_probs=113.9

Q ss_pred             ccccceEecCCceEEEEEEec-----CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--ce--
Q 047196          677 FSKENLIGVGSFGSVYKGRLH-----DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNED--FK--  746 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--~~--  746 (827)
                      |+..+.||+|+||.||+|++.     +|+.||||++.... ....+.+.+|++++++++|||||++++++...+  ..  
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            478899999999999998653     57899999997543 345678999999999999999999999998743  22  


Q ss_pred             eeeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          747 ALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       747 ~l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ++++...       ....+++.....++.+++.||+|||   +.+|+||||||+||+          |||+++.......
T Consensus       113 v~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  189 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHE  189 (318)
T ss_dssp             EECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCS
T ss_pred             EEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCcccccccccccc
Confidence            2233221       1234678888999999999999996   568999999999998          9999987754432


Q ss_pred             c--ccccceecccccccccC
Q 047196          810 M--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~--~~~~~~gt~~Y~APE~l  827 (827)
                      .  ......||+.|+|||++
T Consensus       190 ~~~~~~~~~~~~~y~aPE~~  209 (318)
T 3lxp_A          190 YYRVREDGDSPVFWYAPECL  209 (318)
T ss_dssp             EEEC---CCCCGGGCCHHHH
T ss_pred             ccccccCCCCCceeeChHHh
Confidence            1  12223478899999963

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.76  E-value=8.6e-19  Score=188.11  Aligned_cols=151  Identities=23%  Similarity=0.411  Sum_probs=106.4

Q ss_pred             HhhcccccceEecCCceEEEEEEec----CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-  745 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-  745 (827)
                      ..++|...+.||+|+||.||+|+..    +++.||||++...  .....+.+.+|++++++++||||+++++++..... 
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  111 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ  111 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence            4467888899999999999999754    3458999998643  34455789999999999999999999999876542 


Q ss_pred             ------eeeeeecc--------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------
Q 047196          746 ------KALDCLHS--------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------  796 (827)
Q Consensus       746 ------~~l~~l~~--------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------  796 (827)
                            .++++...              ....+++.....++.++++||.|||   +.+|+||||||+||+         
T Consensus       112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl  188 (313)
T 3brb_A          112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCV  188 (313)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEE
T ss_pred             CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEE
Confidence                  22332221              1234778889999999999999995   678999999999998         


Q ss_pred             -eecccccccCCCccc-cccceeccccccccc
Q 047196          797 -DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       797 -DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                       |||+++......... .....+++.|+|||+
T Consensus       189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  220 (313)
T 3brb_A          189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIES  220 (313)
T ss_dssp             CSCSCC----------------CCGGGSCHHH
T ss_pred             eecCcceecccccccCcccccCCCccccCchh
Confidence             999998764432211 122337889999996

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.76  E-value=1.4e-18  Score=190.38  Aligned_cols=156  Identities=23%  Similarity=0.293  Sum_probs=109.0

Q ss_pred             hHHHHHhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-
Q 047196          668 QDLFRATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-  745 (827)
Q Consensus       668 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-  745 (827)
                      .......++|...+.||+|+||.||+|+.. +|+.||||++.... ....++.+|++.++.++|||||++++++..... 
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            344566788999999999999999999874 68999999985542 223456788899999999999999999855221 


Q ss_pred             ------e--eeeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------
Q 047196          746 ------K--ALDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------  796 (827)
Q Consensus       746 ------~--~l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------  796 (827)
                            .  +++++..           ....+.+.....++.+++.|+.||| .|+++|+||||||+||+          
T Consensus        95 ~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH-~~~~~ivH~Dlkp~NIll~~~~~~~kl  173 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLH-LPSVNVCHRDIKPHNVLVNEADGTLKL  173 (360)
T ss_dssp             CTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHT-STTTCCBCSCCCGGGEEEETTTTEEEE
T ss_pred             cccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh-CCCCCeecCcCCHHHEEEeCCCCcEEE
Confidence                  2  2233221           1234566777889999999999997 35899999999999998          


Q ss_pred             -eecccccccCCCccccccceecccccccccC
Q 047196          797 -DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                       |||+++........  ....||++|+|||++
T Consensus       174 ~Dfg~a~~~~~~~~~--~~~~gt~~y~aPE~~  203 (360)
T 3e3p_A          174 CDFGSAKKLSPSEPN--VAYICSRYYRAPELI  203 (360)
T ss_dssp             CCCTTCBCCCTTSCC--CSTTSCGGGCCHHHH
T ss_pred             eeCCCceecCCCCCc--ccccCCcceeCHHHH
Confidence             99999876543322  234589999999963

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.76  E-value=1.2e-18  Score=183.88  Aligned_cols=144  Identities=30%  Similarity=0.488  Sum_probs=112.8

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--------  744 (827)
                      ..+|+..+.||+|+||.||+|+.. +|+.||||++....    +.+.+|++++++++|||++++++++...+        
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence            457889999999999999999875 78999999987543    34678999999999999999999875411        


Q ss_pred             ----------ceeeeeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------
Q 047196          745 ----------FKALDCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------  796 (827)
Q Consensus       745 ----------~~~l~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------  796 (827)
                                +..+++...          ....+++.....++.++++||.|||   +.+|+||||||+||+        
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~k  162 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVK  162 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEE
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCEE
Confidence                      112222221          1235678888899999999999996   568999999999998        


Q ss_pred             --eecccccccCCCccccccceeccccccccc
Q 047196          797 --DFGIGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       797 --DFGla~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                        |||+++.......  .....||++|+|||+
T Consensus       163 l~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~  192 (284)
T 2a19_B          163 IGDFGLVTSLKNDGK--RTRSKGTLRYMSPEQ  192 (284)
T ss_dssp             ECCCTTCEESSCCSC--CCCCCSCCTTSCHHH
T ss_pred             ECcchhheecccccc--ccccCCcccccChhh
Confidence              9999987654432  123458999999996

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.76  E-value=2.9e-18  Score=181.20  Aligned_cols=146  Identities=25%  Similarity=0.395  Sum_probs=115.6

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+.. +++.||||++.....   ...+.+.+|++++++++|||++++++++...+..++..
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            57888999999999999999875 588999999864321   12467899999999999999999999998776554433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+++.....++.++++|++|||   +.+|+||||||+||+          |||++.......  
T Consensus        94 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~--  168 (284)
T 2vgo_A           94 EFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR--  168 (284)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC--
T ss_pred             EeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcccc--
Confidence            2221          134677788899999999999995   678999999999998          999987654322  


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                       .....||+.|+|||+
T Consensus       169 -~~~~~~~~~y~aPE~  183 (284)
T 2vgo_A          169 -RRTMCGTLDYLPPEM  183 (284)
T ss_dssp             -BCCCCSCGGGCCHHH
T ss_pred             -cccccCCCCcCCHHH
Confidence             123458999999996

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.76  E-value=2.8e-18  Score=183.25  Aligned_cols=149  Identities=28%  Similarity=0.344  Sum_probs=118.6

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      +.|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++|||++++++++......++...+
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence            5688889999999999999986 468999999986543 33457899999999999999999999999877654443222


Q ss_pred             c---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 S---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 ~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .         ....+++.....++.++++|+.|||   +.+|+||||||+||+          |||+++........ ..
T Consensus       102 ~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~  177 (303)
T 3a7i_A          102 LGGGSALDLLEPGPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK-RN  177 (303)
T ss_dssp             CTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCC-BC
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCccccc-cC
Confidence            2         1245778888999999999999996   568999999999998          99999876543321 22


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...||+.|+|||++
T Consensus       178 ~~~~~~~y~aPE~~  191 (303)
T 3a7i_A          178 TFVGTPFWMAPEVI  191 (303)
T ss_dssp             CCCSCGGGCCHHHH
T ss_pred             ccCCCcCccCHHHH
Confidence            34589999999963

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.76  E-value=1.9e-18  Score=181.79  Aligned_cols=148  Identities=24%  Similarity=0.391  Sum_probs=110.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++.....   ...+.+.+|++++++++||||+++++++...+..++..
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence            56888899999999999999875 789999999865322   23467899999999999999999999998876555433


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+...          ..+++.....++.++++|++|||   +.+|+||||||+||+          |||+++....... 
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~-  166 (276)
T 2h6d_A           91 EYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF-  166 (276)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC----
T ss_pred             eccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCCcc-
Confidence            33221          24567778899999999999996   457999999999998          9999887643322 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....||+.|+|||++
T Consensus       167 -~~~~~~~~~y~aPE~~  182 (276)
T 2h6d_A          167 -LRTSCGSPNYAAPEVI  182 (276)
T ss_dssp             -----------CCTGGG
T ss_pred             -eecccCCccccCHHHH
Confidence             1234589999999974

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.76  E-value=9.5e-19  Score=189.08  Aligned_cols=150  Identities=23%  Similarity=0.407  Sum_probs=112.1

Q ss_pred             hhcccccceEecCCceEEEEEEe------cCCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      .++|...+.||+|+||.||+|+.      .+++.||||++... ......++.+|+.++++++|||||++++++......
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  108 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence            35788899999999999999984      24788999999644 344556899999999999999999999999876544


Q ss_pred             ee--eeecc---------C------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------
Q 047196          747 AL--DCLHS---------T------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------  796 (827)
Q Consensus       747 ~l--~~l~~---------~------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------  796 (827)
                      ++  ++...         .      ...+.+.+...++.++++||+|||   +.+|+||||||+||+             
T Consensus       109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~  185 (327)
T 2yfx_A          109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG  185 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEEC
Confidence            33  33211         0      124778888999999999999996   568999999999998             


Q ss_pred             eecccccccCCCccc-cccceeccccccccc
Q 047196          797 DFGIGRLLTGDRSMI-QTETLVTIGYMAPGL  826 (827)
Q Consensus       797 DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~  826 (827)
                      |||+++......... .....||++|+|||+
T Consensus       186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  216 (327)
T 2yfx_A          186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEA  216 (327)
T ss_dssp             CCHHHHHHHC------CCGGGSCGGGCCHHH
T ss_pred             ccccccccccccccccCCCcCCCcceeCHhH
Confidence            899887654332211 122347899999996

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.76  E-value=1.1e-18  Score=184.84  Aligned_cols=149  Identities=24%  Similarity=0.261  Sum_probs=105.0

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc-h-HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC-A-MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--  748 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~-~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--  748 (827)
                      .++|+..+.||+|+||.||+|+. .+|+.||||++.... . ...+.+.+|...++.++||||+++++++..++..++  
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            36788999999999999999986 578999999996542 2 223345555666888999999999999987765444  


Q ss_pred             eeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          749 DCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       749 ~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      ++...           ....+++.....++.++++|++|||..  .+|+||||||+||+          |||+++.....
T Consensus        86 e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  163 (290)
T 3fme_A           86 ELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDD  163 (290)
T ss_dssp             ECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC---------
T ss_pred             ehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCccccccc
Confidence            22211           124577888899999999999999742  37999999999998          99999876543


Q ss_pred             Cccccccceeccccccccc
Q 047196          808 RSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~  826 (827)
                      ..  .....||+.|+|||+
T Consensus       164 ~~--~~~~~~t~~y~aPE~  180 (290)
T 3fme_A          164 VA--KDIDAGCKPYMAPER  180 (290)
T ss_dssp             --------CCCCCCSCHHH
T ss_pred             cc--ccccCCCccccChhh
Confidence            22  122358999999997

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.76  E-value=1.2e-18  Score=207.28  Aligned_cols=145  Identities=22%  Similarity=0.333  Sum_probs=116.9

Q ss_pred             hcccccceEecCCceEEEEEEec--CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH--DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF------  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~--~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~------  745 (827)
                      ++|...+.||+|+||.||+|+..  +|+.||||++... .....+.|.+|++++++++|||||++++++...+.      
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            57889999999999999999875  6899999998643 34455678999999999999999999999876543      


Q ss_pred             -eeeeeeccC------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccccCCCc
Q 047196          746 -KALDCLHST------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLTGDRS  809 (827)
Q Consensus       746 -~~l~~l~~~------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~~~~~  809 (827)
                       .+++++...      ...+++.+...|+.++++||+|||   +.+|+||||||+||+         |||+++.....  
T Consensus       160 ~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~~~kl~DFG~a~~~~~~--  234 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEEQLKLIDLGAVSRINSF--  234 (681)
T ss_dssp             EEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSCEEECCCTTCEETTCC--
T ss_pred             EEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCCcEEEEecccchhcccC--
Confidence             333433221      225778889999999999999996   568999999999998         99999876433  


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                         ....||++|||||++
T Consensus       235 ---~~~~gt~~y~aPE~~  249 (681)
T 2pzi_A          235 ---GYLYGTPGFQAPEIV  249 (681)
T ss_dssp             ---SCCCCCTTTSCTTHH
T ss_pred             ---CccCCCccccCHHHH
Confidence               234599999999963

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=2.2e-19  Score=214.10  Aligned_cols=182  Identities=23%  Similarity=0.244  Sum_probs=76.1

Q ss_pred             cCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCC
Q 047196          396 IPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNL  475 (827)
Q Consensus       396 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  475 (827)
                      .|..+..+++|+.|+|++|++. .+|..+.++++|++|+|++|.|+ .+|..+.++++|++|+|++|+|+ .+|..++++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3444555555555555555554 34444445555555555555555 45555555555555555555555 445555555


Q ss_pred             CCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccC-ceEEcccceeeecccccccCCCCCCEEE
Q 047196          476 TSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVV-IGINLSRNNFSGDIPSTIGDLKDLQNIS  554 (827)
Q Consensus       476 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L-~~L~Ls~N~l~g~ip~~~~~l~~L~~L~  554 (827)
                      ++|++|+|++|.|+ .+|..|..+++|+.|+|++|.|++.+|..+..+... ..++|++|.++|.+|..      |+.|+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~  365 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE  365 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence            55555555555554 344445555555555555555555555544433211 22455555555555543      23344


Q ss_pred             CCCC--------cceeecCCCCc---CCceEeCcCCcCeecCCC
Q 047196          555 LACN--------GLEGLIPESFG---YLTELNLSFNKLEGEIPR  587 (827)
Q Consensus       555 Ls~N--------~l~g~ip~~~~---~L~~L~ls~N~l~g~ip~  587 (827)
                      +++|        .+.+.++..+.   .+....+++|.+.+....
T Consensus       366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~  409 (727)
T 4b8c_D          366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYAT  409 (727)
T ss_dssp             ------------------------------------CCCGGGCC
T ss_pred             eecccccccccCCccccccchhhcccccceeeeeccccccccCc
Confidence            4444        22222222222   334556677776654443

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.76  E-value=3.4e-18  Score=181.98  Aligned_cols=148  Identities=22%  Similarity=0.309  Sum_probs=117.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---------hHHHHHHHHHHHHHHhcC-CCCceEEEeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---------AMALKSFEAECEVMKNIR-HRNHVKRISSCSN  742 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---------~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~  742 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||||++....         ....+.+.+|++++++++ ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            467888999999999999999875 68999999986432         123467889999999996 9999999999987


Q ss_pred             CCceeeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          743 EDFKALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       743 ~~~~~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                      ....++...+..          ...+++.....++.++++||+|||   +.+|+||||||+||+          |||+++
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  172 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSC  172 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccchh
Confidence            765554333322          134677788899999999999996   568999999999998          999998


Q ss_pred             cccCCCccccccceeccccccccc
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      .......  .....||+.|+|||+
T Consensus       173 ~~~~~~~--~~~~~~~~~y~aPE~  194 (298)
T 1phk_A          173 QLDPGEK--LREVCGTPSYLAPEI  194 (298)
T ss_dssp             ECCTTCC--BCCCCSCGGGCCHHH
T ss_pred             hcCCCcc--cccccCCccccCHHH
Confidence            7654322  123458999999996

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.76  E-value=1.2e-18  Score=204.60  Aligned_cols=144  Identities=25%  Similarity=0.442  Sum_probs=107.8

Q ss_pred             ceEecCCceEEEEEEec---CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeeecc-
Q 047196          681 NLIGVGSFGSVYKGRLH---DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCLHS-  753 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l~~-  753 (827)
                      +.||+|+||.||+|.+.   .++.||||+++...  ....++|.+|++++++++|||||+++++|..+... +++++.. 
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g  454 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG  454 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCC
Confidence            57999999999999653   46889999997543  23457899999999999999999999999765532 2233221 


Q ss_pred             -------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc--cccc
Q 047196          754 -------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM--IQTE  814 (827)
Q Consensus       754 -------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~--~~~~  814 (827)
                             ....+.+.....|+.+|++||+|||   +.+|+||||||+|||          |||+|+.+..+...  ..+.
T Consensus       455 ~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~  531 (635)
T 4fl3_A          455 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTH  531 (635)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----------
T ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccC
Confidence                   1245778888999999999999996   568999999999998          99999887544322  1222


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..+|+.|+|||++
T Consensus       532 ~~~t~~y~APE~~  544 (635)
T 4fl3_A          532 GKWPVKWYAPECI  544 (635)
T ss_dssp             ---CGGGSCHHHH
T ss_pred             CCCceeeeChhhh
Confidence            3368899999974

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.76  E-value=1.3e-18  Score=190.72  Aligned_cols=156  Identities=26%  Similarity=0.332  Sum_probs=119.6

Q ss_pred             ccchhHHHHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-----CCCceEEE
Q 047196          664 RFSYQDLFRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-----HRNHVKRI  737 (827)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-----H~niv~~~  737 (827)
                      .+++.+-....++|...++||+|+||.||+|+. .+++.||||++... ....+.+.+|++++++++     |||||+++
T Consensus        24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~  102 (360)
T 3llt_A           24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYH  102 (360)
T ss_dssp             SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred             eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence            344444444567899999999999999999987 46899999998643 334567888999999997     99999999


Q ss_pred             eeeecCCceeeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------
Q 047196          738 SSCSNEDFKALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------  796 (827)
Q Consensus       738 ~~~~~~~~~~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------  796 (827)
                      +++...+..++...+..           ...+++.+...++.++++||+|||   +.+|+||||||+|||          
T Consensus       103 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~  179 (360)
T 3llt_A          103 GKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSL  179 (360)
T ss_dssp             EEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEE
T ss_pred             ceeeECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccc
Confidence            99988775544322211           123677788899999999999996   578999999999985          


Q ss_pred             -------------------------eecccccccCCCccccccceecccccccccC
Q 047196          797 -------------------------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -------------------------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                                               |||+|+.....    .....||+.|+|||++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----~~~~~gt~~y~aPE~~  231 (360)
T 3llt_A          180 ITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----HGSIINTRQYRAPEVI  231 (360)
T ss_dssp             EEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC----CCSCCSCGGGCCHHHH
T ss_pred             cchhcccccccccccccCCCCEEEEeccCceecCCC----CcCccCcccccCcHHH
Confidence                                     67777654322    1234589999999973

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.76  E-value=4.7e-19  Score=198.66  Aligned_cols=147  Identities=23%  Similarity=0.424  Sum_probs=107.3

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      .+|...++||+|+||+||.....+|+.||||++.....   +.+.+|+++++++ +|||||++++++.+....++...+.
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~  100 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC  100 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECC
Confidence            46888899999999986655556789999999864322   2356899999999 7999999999998877654432221


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccccccCCC
Q 047196          754 ----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLLTGDR  808 (827)
Q Consensus       754 ----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~~~~~~~  808 (827)
                                ........+...++.++++||+|||   +.+|+||||||+||+               |||+|+......
T Consensus       101 ~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~  177 (432)
T 3p23_A          101 AATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGR  177 (432)
T ss_dssp             SEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC----
T ss_pred             CCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCC
Confidence                      1122333456789999999999996   567999999999987               999998765432


Q ss_pred             cc--ccccceecccccccccC
Q 047196          809 SM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ..  .....+||++|+|||++
T Consensus       178 ~~~~~~~~~~gt~~y~APE~l  198 (432)
T 3p23_A          178 HSFSRRSGVPGTEGWIAPEML  198 (432)
T ss_dssp             --------CCSCTTSCCGGGT
T ss_pred             cceeeccccCCCcCccChhhh
Confidence            21  12334599999999975

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.76  E-value=1.3e-18  Score=182.41  Aligned_cols=145  Identities=16%  Similarity=0.316  Sum_probs=110.4

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Cc--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DF--KAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~--~~l  748 (827)
                      ++|...+.||+|+||.||+|+.+ |+.||||++...  .....++|.+|++++++++|||||++++++...  ..  ..+
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            56888899999999999999985 789999999754  234557899999999999999999999999775  33  233


Q ss_pred             eeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 DCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 ~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ++....          ...+++.+...++.++++||+|||. +.++|+||||||+||+          |||++....   
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~-~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~---  164 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ---  164 (271)
T ss_dssp             ECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTT-SSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS---
T ss_pred             cccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc-CCCceecCCCccceEEEcCCcceeEEeccceeeec---
Confidence            333221          1247888999999999999999953 2233999999999998          344432211   


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                         .....||+.|+|||++
T Consensus       165 ---~~~~~~t~~y~aPE~~  180 (271)
T 3kmu_A          165 ---SPGRMYAPAWVAPEAL  180 (271)
T ss_dssp             ---CTTCBSCGGGSCHHHH
T ss_pred             ---ccCccCCccccChhhh
Confidence               1234589999999963

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.76  E-value=7.4e-19  Score=192.93  Aligned_cols=151  Identities=17%  Similarity=0.224  Sum_probs=111.3

Q ss_pred             hhcccccceEecCCceEEEEEEecC------CcEEEEEEEcccchHH-----------HHHHHHHHHHHHhcCCCCceEE
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHD------GIEVAIKVFHQNCAMA-----------LKSFEAECEVMKNIRHRNHVKR  736 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~~~~-----------~~~~~~Ei~~l~~l~H~niv~~  736 (827)
                      .++|...+.||+|+||.||+|++..      ++.||||++.......           ...+.+|+..++.++|+|||++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4579999999999999999998754      4789999986543211           1234456777888899999999


Q ss_pred             EeeeecCC------ceeeeeec--------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------
Q 047196          737 ISSCSNED------FKALDCLH--------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------  796 (827)
Q Consensus       737 ~~~~~~~~------~~~l~~l~--------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------  796 (827)
                      ++++....      +.+++++.        .....+++..+..|+.++++||+|||   +.+|+||||||+|||      
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~~~  190 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYKNP  190 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESSCT
T ss_pred             EeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecCCC
Confidence            99986641      22333331        12246889999999999999999996   458999999999998      


Q ss_pred             ------eecccccccCCCcc------ccccceecccccccccC
Q 047196          797 ------DFGIGRLLTGDRSM------IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ------DFGla~~~~~~~~~------~~~~~~gt~~Y~APE~l  827 (827)
                            |||+|+.+......      ......||+.|||||++
T Consensus       191 ~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  233 (364)
T 3op5_A          191 DQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH  233 (364)
T ss_dssp             TCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH
T ss_pred             CeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh
Confidence                  99999876433211      11223499999999963

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.76  E-value=8.9e-19  Score=192.02  Aligned_cols=148  Identities=23%  Similarity=0.297  Sum_probs=116.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..+.||+|+||.||+|+.. +|+.||+|++... .....+.+.+|++++++++|||||++++++...+..++...+
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            56888899999999999999875 6899999998754 344457899999999999999999999999887655443333


Q ss_pred             cCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 STN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ...          ..+++.....++.++++|++|||..  .+|+||||||+||+          |||+++......   .
T Consensus       113 ~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~  187 (360)
T 3eqc_A          113 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM---A  187 (360)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCccccccc---c
Confidence            221          2456677788999999999999743  27999999999998          999987653221   1


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||++|+|||++
T Consensus       188 ~~~~gt~~y~aPE~~  202 (360)
T 3eqc_A          188 NSFVGTRSYMSPERL  202 (360)
T ss_dssp             ---CCCCTTCCHHHH
T ss_pred             cCCCCCCCeECHHHH
Confidence            234589999999963

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.76  E-value=1.3e-18  Score=190.10  Aligned_cols=145  Identities=25%  Similarity=0.402  Sum_probs=112.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-------  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-------  744 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++...  .....+++.+|+.++++++|||||++++++....       
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            56888899999999999999864 6899999999653  2334567899999999999999999999987653       


Q ss_pred             -ceeeeeecc-----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          745 -FKALDCLHS-----TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       745 -~~~l~~l~~-----~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +..+++...     ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++..... 
T Consensus       104 ~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-  179 (353)
T 3coi_A          104 FYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE-  179 (353)
T ss_dssp             CEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-----
T ss_pred             EEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccCCCCC-
Confidence             223333221     1234678888999999999999996   568999999999998          99998765422 


Q ss_pred             ccccccceeccccccccc
Q 047196          809 SMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~  826 (827)
                         .....||++|+|||+
T Consensus       180 ---~~~~~~t~~y~aPE~  194 (353)
T 3coi_A          180 ---MTGYVVTRWYRAPEV  194 (353)
T ss_dssp             -------CCSBCCSCHHH
T ss_pred             ---ccccccCcCcCCHHH
Confidence               123458999999996

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.76  E-value=1.5e-18  Score=184.64  Aligned_cols=147  Identities=17%  Similarity=0.198  Sum_probs=115.7

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|...+.||+|+||.||+|+. .+|+.||||++....  ..+.+.+|+++++++ +|++++++++++......++...+
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~   87 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   87 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEe
Confidence            5688899999999999999985 578999999986432  234578999999999 799999999998877654442222


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccccccCC
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLLTGD  807 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~~~~~~  807 (827)
                      .          ....+++.+...++.++++||+|||   +.+|+||||||+||+               |||+++.....
T Consensus        88 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~  164 (298)
T 1csn_A           88 LGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP  164 (298)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred             cCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccc
Confidence            1          1234778888999999999999996   678999999999998               89999876543


Q ss_pred             Ccc------ccccceeccccccccc
Q 047196          808 RSM------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       808 ~~~------~~~~~~gt~~Y~APE~  826 (827)
                      ...      ......||+.|+|||+
T Consensus       165 ~~~~~~~~~~~~~~~gt~~y~aPE~  189 (298)
T 1csn_A          165 VTKQHIPYREKKNLSGTARYMSINT  189 (298)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHH
T ss_pred             cccccccccCccCCCCCcccCCchh
Confidence            221      1223458999999996

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.76  E-value=4.6e-18  Score=180.28  Aligned_cols=148  Identities=28%  Similarity=0.391  Sum_probs=111.9

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecC----Cceee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNE----DFKAL  748 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~----~~~~l  748 (827)
                      .|...+.||+|+||.||+|... +++.||+|++...  .....+.+.+|++++++++|||||++++++...    ...++
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            3666778999999999999864 6889999998653  244567899999999999999999999987642    22222


Q ss_pred             --eeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCC
Q 047196          749 --DCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGD  807 (827)
Q Consensus       749 --~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~  807 (827)
                        ++....        ...+++.....++.++++||+|||. +.++|+||||||+||+           |||+++.....
T Consensus       107 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~  185 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS  185 (290)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT-SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT
T ss_pred             EEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHc-CCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccccc
Confidence              332211        1346777788999999999999973 2234999999999998           99998755433


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..   ....||++|+|||++
T Consensus       186 ~~---~~~~~t~~y~aPE~~  202 (290)
T 1t4h_A          186 FA---KAVIGTPEFMAPEMY  202 (290)
T ss_dssp             SB---EESCSSCCCCCGGGG
T ss_pred             cc---ccccCCcCcCCHHHH
Confidence            21   234589999999974

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.76  E-value=1.5e-18  Score=184.87  Aligned_cols=148  Identities=29%  Similarity=0.395  Sum_probs=114.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++.....  ...+.+.+|++++++++||||+++++++..++..++...
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            57888899999999999999875 689999999865432  224678899999999999999999999987765444222


Q ss_pred             ccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          752 HST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       752 ~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +..           ...+.+.....++.++++||+|||   +.+|+||||||+||+          |||+++........
T Consensus        83 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~  159 (299)
T 2r3i_A           83 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT  159 (299)
T ss_dssp             CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCSBC
T ss_pred             cccCCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCccc
Confidence            211           134667778889999999999996   568999999999998          99999876433221


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                       .....||+.|+|||+
T Consensus       160 -~~~~~~~~~y~aPE~  174 (299)
T 2r3i_A          160 -YTHEVVTLWYRAPEI  174 (299)
T ss_dssp             -TTSCBCCCTTCCHHH
T ss_pred             -cCcccccccccCcHH
Confidence             233458999999996

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.76  E-value=1e-18  Score=188.38  Aligned_cols=148  Identities=26%  Similarity=0.361  Sum_probs=112.5

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch--------HHHHHHHHHHHHHHhcCCCCceEEEeeeecCC
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--------MALKSFEAECEVMKNIRHRNHVKRISSCSNED  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~  744 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||||++.....        .....+.+|++++++++||||+++++++..+.
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            467899999999999999999865 689999999864321        12345889999999999999999999987665


Q ss_pred             cee-eeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccc
Q 047196          745 FKA-LDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGR  802 (827)
Q Consensus       745 ~~~-l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~  802 (827)
                      ..+ ++++..        ....+++.....++.++++||+|||   +.+|+||||||+||+             |||+++
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence            322 233221        1235677788899999999999996   568999999999998             899987


Q ss_pred             cccCCCccccccceeccccccccc
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      .......  .....||+.|+|||+
T Consensus       166 ~~~~~~~--~~~~~gt~~y~aPE~  187 (322)
T 2ycf_A          166 ILGETSL--MRTLCGTPTYLAPEV  187 (322)
T ss_dssp             ECCCCHH--HHHHHSCCTTCCHHH
T ss_pred             ecccccc--cccccCCcCccCchh
Confidence            7643221  122358999999996

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.76  E-value=2.4e-18  Score=192.91  Aligned_cols=145  Identities=21%  Similarity=0.322  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhc------CCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNI------RHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l------~H~niv~~~~~~~~~~~~~  747 (827)
                      .+|+..++||+|+||.||+|+.. +++.||||++... ....+.+.+|+++++.+      .|+|++++++++......+
T Consensus        97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~  175 (429)
T 3kvw_A           97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC  175 (429)
T ss_dssp             TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEE
T ss_pred             CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEE
Confidence            46888999999999999999865 5899999999654 33456788899999888      4669999999998776554


Q ss_pred             eeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccc
Q 047196          748 LDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLL  804 (827)
Q Consensus       748 l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~  804 (827)
                      +...+..           ...+++.....++.++++||+|||   +.+|+||||||+|||            |||+|+..
T Consensus       176 lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~  252 (429)
T 3kvw_A          176 MTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYE  252 (429)
T ss_dssp             EEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCEET
T ss_pred             EEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccceec
Confidence            4322211           123778888999999999999997   458999999999998            99998764


Q ss_pred             cCCCccccccceecccccccccC
Q 047196          805 TGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ....    ...+||++|||||++
T Consensus       253 ~~~~----~~~~gt~~y~aPE~~  271 (429)
T 3kvw_A          253 HQRV----YTYIQSRFYRAPEVI  271 (429)
T ss_dssp             TCCC----CSSCSCGGGCCHHHH
T ss_pred             CCcc----cccCCCCCccChHHH
Confidence            3221    234689999999973

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.75  E-value=7.1e-19  Score=187.63  Aligned_cols=149  Identities=26%  Similarity=0.324  Sum_probs=112.8

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||+|++........+.+.+|++++++++||||+++++++...+..++...+
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence            467888999999999999999975 5899999999765555567899999999999999999999999876654442222


Q ss_pred             c-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          753 S-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       753 ~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      .           ....+++.....++.++++|+.|||   +.+|+||||||+||+          |||+++....... .
T Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~  173 (302)
T 2j7t_A           98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQ-K  173 (302)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHH-C
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccccc-c
Confidence            1           1245778888899999999999996   568999999999998          9998764321111 1


Q ss_pred             cccceeccccccccc
Q 047196          812 QTETLVTIGYMAPGL  826 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~  826 (827)
                      .....||+.|+|||+
T Consensus       174 ~~~~~~~~~y~aPE~  188 (302)
T 2j7t_A          174 RDSFIGTPYWMAPEV  188 (302)
T ss_dssp             -----CCGGGCCHHH
T ss_pred             cccccCChhhcCCee
Confidence            122458999999996

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=4.3e-18  Score=197.95  Aligned_cols=172  Identities=28%  Similarity=0.383  Sum_probs=100.7

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|+.|++++|.+.. +| .+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|+
T Consensus        44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            45555555555543 22 35555666666666666655443  5556666666666666653 22 45556666666666


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..++.|+.|+|++|+|++. 
T Consensus       118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-  190 (605)
T 1m9s_A          118 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-  190 (605)
T ss_dssp             TSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred             CCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence            666653 2 3355666666666666666654  445566666666666666666555  56666666666666666653 


Q ss_pred             cccccCCCCCCEEECCCCcceeecCC
Q 047196          541 PSTIGDLKDLQNISLACNGLEGLIPE  566 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g~ip~  566 (827)
                       +.+..+++|+.|+|++|++++....
T Consensus       191 -~~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          191 -RALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             -GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred             -hHHccCCCCCEEEccCCcCcCCccc
Confidence             2466666666666666666654333

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.75  E-value=2.3e-18  Score=186.05  Aligned_cols=158  Identities=21%  Similarity=0.299  Sum_probs=117.4

Q ss_pred             cchhHHHHHhhccccc-ceEecCCceEEEEEEec-CCcEEEEEEEcccch--HHHHHHHHHHHHHHhcC-CCCceEEEee
Q 047196          665 FSYQDLFRATEKFSKE-NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA--MALKSFEAECEVMKNIR-HRNHVKRISS  739 (827)
Q Consensus       665 ~~~~~~~~~~~~~~~~-~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~-H~niv~~~~~  739 (827)
                      ..++......+.|... +.||+|+||.||+|+.. +|+.||||++.....  ....++.+|++++++++ ||||++++++
T Consensus        18 ~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~   97 (327)
T 3lm5_A           18 LYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV   97 (327)
T ss_dssp             CCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred             hHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            3344445555667766 88999999999999865 689999999875432  23567899999999995 5999999999


Q ss_pred             eecCCceee--eeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------
Q 047196          740 CSNEDFKAL--DCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------  796 (827)
Q Consensus       740 ~~~~~~~~l--~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------  796 (827)
                      +......++  +++..          ....+++.+...++.++++||+|||   +.+|+||||||+||+           
T Consensus        98 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~k  174 (327)
T 3lm5_A           98 YENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIK  174 (327)
T ss_dssp             EECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEE
T ss_pred             EEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEE
Confidence            987765444  22211          1245778889999999999999996   568999999999998           


Q ss_pred             --eecccccccCCCccccccceecccccccccC
Q 047196          797 --DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                        |||+++.......  .....||++|+|||++
T Consensus       175 L~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~  205 (327)
T 3lm5_A          175 IVDFGMSRKIGHACE--LREIMGTPEYLAPEIL  205 (327)
T ss_dssp             ECCGGGCEEC-----------CCCGGGCCHHHH
T ss_pred             EeeCccccccCCccc--cccccCCcCccCCeee
Confidence              8999887643322  1234589999999963

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=5.3e-18  Score=173.13  Aligned_cols=154  Identities=23%  Similarity=0.250  Sum_probs=82.7

Q ss_pred             ccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCC
Q 047196          382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAG  461 (827)
Q Consensus       382 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  461 (827)
                      .+.++.++++++ .+|..+.  ++|+.|+|++|++++..|..|..+++|++|+|++|++.+..+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456666666665 3444332  5566666666666665555566666666666666665544334445555555555555


Q ss_pred             CcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeeccc
Q 047196          462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIP  541 (827)
Q Consensus       462 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip  541 (827)
                      |++++..+..+..+++|++|+|++|.++                         .+|..+..+++|+.|+|++|+|++..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-------------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-------------------------ELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-------------------------ccCcccccCCCCCEEECCCCcCCccCH
Confidence            5555443444444444554444444444                         334444455555555555555554444


Q ss_pred             ccccCCCCCCEEECCCCcceee
Q 047196          542 STIGDLKDLQNISLACNGLEGL  563 (827)
Q Consensus       542 ~~~~~l~~L~~L~Ls~N~l~g~  563 (827)
                      ..+..+++|+.|+|++|.+.+.
T Consensus       153 ~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTTCTTCCEEECTTSCBCTT
T ss_pred             HHHhCCCCCCEEEeeCCCccCC
Confidence            4555555555555555555443

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.75  E-value=1.1e-18  Score=185.80  Aligned_cols=149  Identities=26%  Similarity=0.400  Sum_probs=111.7

Q ss_pred             hcccccceEecCCceEEEEEEecC----CcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-c--e
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD----GIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-F--K  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~--~  746 (827)
                      ..|...++||+|+||.||+|+..+    +..||||++... .....+++.+|++++++++|||||+++++|...+ .  .
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            357778999999999999998642    346899998753 3445678999999999999999999999975543 2  2


Q ss_pred             eeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          747 ALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       747 ~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +++++..         ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++.....
T Consensus       105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  181 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  181 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCG
T ss_pred             EEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECccccccccccc
Confidence            3333322         2334677888899999999999996   568999999999998          99999876433


Q ss_pred             Ccc---ccccceeccccccccc
Q 047196          808 RSM---IQTETLVTIGYMAPGL  826 (827)
Q Consensus       808 ~~~---~~~~~~gt~~Y~APE~  826 (827)
                      ...   ......||+.|+|||+
T Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~  203 (298)
T 3f66_A          182 EYYSVHNKTGAKLPVKWMALES  203 (298)
T ss_dssp             GGCBC-----CCBCGGGSCHHH
T ss_pred             chhccccccCCCCCccccChHH
Confidence            211   1222347889999996

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.6e-18  Score=180.26  Aligned_cols=145  Identities=22%  Similarity=0.372  Sum_probs=66.3

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      +++.|+++++.+...  +.+..+++|++|+|++|++++..|  +..+++|++|+|++|.+++. | .+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEECC
Confidence            455566666655543  235556666666666666654333  55566666666666665542 1 24445555555555


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLR  256 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  256 (827)
                      +|.+++ ++ .+. .+++|++|++++|.+++.  ..++.+++|++|++++|.+++..|  +..+++|++|++++|.++
T Consensus       121 ~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          121 HNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             TSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            554443 21 111 122444444444444332  233344444444444444433222  333444444444444443

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.75  E-value=2.9e-18  Score=190.46  Aligned_cols=143  Identities=24%  Similarity=0.395  Sum_probs=102.5

Q ss_pred             hccccc-ceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHH-hcCCCCceEEEeeeec----CCce-
Q 047196          675 EKFSKE-NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMK-NIRHRNHVKRISSCSN----EDFK-  746 (827)
Q Consensus       675 ~~~~~~-~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~-~l~H~niv~~~~~~~~----~~~~-  746 (827)
                      ++|... ++||+|+||+||+|+.. +|+.||||++...     ..+.+|++++. ..+|||||++++++..    .... 
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~  135 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL  135 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence            455554 68999999999999865 6899999998643     34678888874 5589999999998754    2222 


Q ss_pred             -eeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccc
Q 047196          747 -ALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGR  802 (827)
Q Consensus       747 -~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~  802 (827)
                       +++++...          ...+++.....|+.++++||+|||   +.+|+||||||+|||             |||+++
T Consensus       136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~  212 (400)
T 1nxk_A          136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK  212 (400)
T ss_dssp             EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEeccccc
Confidence             23333211          124778888999999999999996   468999999999998             999998


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .......  ....+||++|+|||++
T Consensus       213 ~~~~~~~--~~~~~gt~~y~aPE~~  235 (400)
T 1nxk_A          213 ETTSHNS--LTTPCYTPYYVAPEVL  235 (400)
T ss_dssp             ECC-------------CTTCCGGGS
T ss_pred             ccCCCCc--cccCCCCCCccCHhhc
Confidence            6543322  2335689999999985

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.75  E-value=1.9e-18  Score=184.23  Aligned_cols=149  Identities=26%  Similarity=0.384  Sum_probs=109.1

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC--------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED--------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~--------  744 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++... ....+.+.+|++++++++|||++++++++.+..        
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            467899999999999999999864 7899999998653 344578999999999999999999999886531        


Q ss_pred             -----ce--eeeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------ee
Q 047196          745 -----FK--ALDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DF  798 (827)
Q Consensus       745 -----~~--~l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DF  798 (827)
                           ..  .+++...         ......+.....++.++++|++|||   +.+|+||||||+||+          ||
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~df  160 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDF  160 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEeeC
Confidence                 11  1222211         1223456677789999999999996   568999999999998          99


Q ss_pred             cccccccCCC-------------ccccccceeccccccccc
Q 047196          799 GIGRLLTGDR-------------SMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       799 Gla~~~~~~~-------------~~~~~~~~gt~~Y~APE~  826 (827)
                      |+++......             ........||+.|+|||+
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  201 (303)
T 1zy4_A          161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEV  201 (303)
T ss_dssp             CCCSCTTC-------------------------CTTSCHHH
T ss_pred             cchhhcccccchhccccccccccccccccCCCcccccCccc
Confidence            9998654221             011123458999999996

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.75  E-value=1.3e-18  Score=204.96  Aligned_cols=151  Identities=25%  Similarity=0.395  Sum_probs=112.9

Q ss_pred             hhcccccceEecCCceEEEEEEec----CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-ee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-KA  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-~~  747 (827)
                      .++|...+.||+|+||.||+|++.    .+..||||++... .....+.|.+|+.++++++|||||++++++.+... .+
T Consensus       389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv  468 (656)
T 2j0j_A          389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWII  468 (656)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEE
T ss_pred             cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEE
Confidence            356888899999999999999864    2567999998653 33445789999999999999999999999865442 22


Q ss_pred             eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ++++..         ....+++.....++.++++||+|||   +.+|+||||||+|||          |||+++......
T Consensus       469 ~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~  545 (656)
T 2j0j_A          469 MELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  545 (656)
T ss_dssp             EECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC--
T ss_pred             EEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCCCc
Confidence            333321         1235778888899999999999996   468999999999998          999998765433


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      ........+|+.|||||++
T Consensus       546 ~~~~~~~~~t~~y~aPE~~  564 (656)
T 2j0j_A          546 YYKASKGKLPIKWMAPESI  564 (656)
T ss_dssp             --------CCGGGCCHHHH
T ss_pred             ceeccCCCCCcceeCHHHh
Confidence            2222223478899999963

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.75  E-value=2.8e-18  Score=183.80  Aligned_cols=148  Identities=29%  Similarity=0.413  Sum_probs=105.9

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+. .+|+.||||++...   .....+++.+|++++++++||||+++++++...+..++..
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  111 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL  111 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence            5788899999999999999986 57899999998642   2445678999999999999999999999998776554432


Q ss_pred             eccC--------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          751 LHST--------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       751 l~~~--------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      .+..              ...+++.....++.++++||+|||   +.+|+||||||+||+          |||+++....
T Consensus       112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~  188 (310)
T 2wqm_A          112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  188 (310)
T ss_dssp             ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred             ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence            2221              233567778899999999999996   568999999999998          9999887644


Q ss_pred             CCccccccceeccccccccc
Q 047196          807 DRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~  826 (827)
                      .... .....||+.|+|||+
T Consensus       189 ~~~~-~~~~~~~~~y~aPE~  207 (310)
T 2wqm_A          189 KTTA-AHSLVGTPYYMSPER  207 (310)
T ss_dssp             -----------CCSSCCHHH
T ss_pred             CCcc-ccccCCCeeEeChHH
Confidence            3221 122458999999996

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.75  E-value=1.7e-18  Score=188.84  Aligned_cols=147  Identities=18%  Similarity=0.335  Sum_probs=117.1

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchH-----------------HHHHHHHHHHHHHhcCCCCceEEE
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAM-----------------ALKSFEAECEVMKNIRHRNHVKRI  737 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-----------------~~~~~~~Ei~~l~~l~H~niv~~~  737 (827)
                      ++|...+.||+|+||.||+|+. +|+.||||++......                 ..+.+.+|++++++++||||++++
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            5788899999999999999998 8999999998643211                 117899999999999999999999


Q ss_pred             eeeecCCceee--eeecc--------------C--CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---
Q 047196          738 SSCSNEDFKAL--DCLHS--------------T--NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---  796 (827)
Q Consensus       738 ~~~~~~~~~~l--~~l~~--------------~--~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---  796 (827)
                      +++...+..++  ++...              .  ...+++.....++.++++|++|||.  .++|+||||||+||+   
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~~  187 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDK  187 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEECT
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEcC
Confidence            99987765443  22111              1  3456788889999999999999974  378999999999998   


Q ss_pred             -------eecccccccCCCccccccceecccccccccC
Q 047196          797 -------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                             |||+++......   .....||+.|+|||++
T Consensus       188 ~~~~kl~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~  222 (348)
T 2pml_X          188 NGRVKLSDFGESEYMVDKK---IKGSRGTYEFMPPEFF  222 (348)
T ss_dssp             TSCEEECCCTTCEECBTTE---ECSSCSCGGGCCGGGG
T ss_pred             CCcEEEecccccccccccc---ccCCCCCcCccCchhh
Confidence                   999998764431   2334589999999974

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.75  E-value=5.1e-18  Score=184.45  Aligned_cols=152  Identities=27%  Similarity=0.447  Sum_probs=117.4

Q ss_pred             HHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHh--cCCCCceEEEeeeecCC----c
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKN--IRHRNHVKRISSCSNED----F  745 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~--l~H~niv~~~~~~~~~~----~  745 (827)
                      ...++|...+.||+|+||.||+|+. +|+.||||++...   ..+.+.+|+++++.  ++||||+++++++....    .
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~  114 (342)
T 1b6c_B           39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ  114 (342)
T ss_dssp             HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred             cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence            3456799999999999999999987 4899999998643   23567889999988  78999999999987764    2


Q ss_pred             eee--eeeccC-------CCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEccCCCccee----------eeccc
Q 047196          746 KAL--DCLHST-------NCSLNIFDKLNIMIDVASALEYLHFS-----HSTPVIHCDLKPKNVF----------DFGIG  801 (827)
Q Consensus       746 ~~l--~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~Lh~~-----h~~~iiHrDlK~~NIl----------DFGla  801 (827)
                      .++  ++....       ...+++.+...++.++++|++|||..     ++++|+||||||+||+          |||++
T Consensus       115 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~  194 (342)
T 1b6c_B          115 LWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA  194 (342)
T ss_dssp             EEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred             eEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCc
Confidence            233  322211       13467788899999999999999832     2789999999999998          99999


Q ss_pred             ccccCCCcc---ccccceecccccccccC
Q 047196          802 RLLTGDRSM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       802 ~~~~~~~~~---~~~~~~gt~~Y~APE~l  827 (827)
                      +........   ......||+.|+|||++
T Consensus       195 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  223 (342)
T 1b6c_B          195 VRHDSATDTIDIAPNHRVGTKRYMAPEVL  223 (342)
T ss_dssp             EEEETTTTEEEECCCSCCCCGGGCCHHHH
T ss_pred             eeccccccccccccccCCcCcccCCHhhh
Confidence            877544322   12234589999999963

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.75  E-value=4.7e-19  Score=194.81  Aligned_cols=149  Identities=26%  Similarity=0.418  Sum_probs=103.2

Q ss_pred             cccccceEecCCceEEEEEEec--CC--cEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-c--ee
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH--DG--IEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-F--KA  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~--~g--~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~--~~  747 (827)
                      .|...++||+|+||.||+|++.  ++  ..||||++... .....++|.+|++++++++|||||+++++|...+ .  .+
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            3566789999999999999863  22  46899998643 3345678999999999999999999999976533 2  23


Q ss_pred             eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      ++++..         ....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus       170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~  246 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  246 (373)
T ss_dssp             EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccccc
Confidence            333322         1234677788899999999999996   568999999999998          999998764332


Q ss_pred             cc---ccccceecccccccccC
Q 047196          809 SM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~---~~~~~~gt~~Y~APE~l  827 (827)
                      ..   ......+|++|+|||++
T Consensus       247 ~~~~~~~~~~~~~~~y~aPE~~  268 (373)
T 3c1x_A          247 FDSVHNKTGAKLPVKWMALESL  268 (373)
T ss_dssp             -----------CCGGGSCHHHH
T ss_pred             cccccccCCCCCcccccChHHh
Confidence            11   11223478899999963

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.75  E-value=2.6e-18  Score=186.35  Aligned_cols=149  Identities=30%  Similarity=0.438  Sum_probs=106.3

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHH--HHHHHHHhcCCCCceEEEeeeecC----C---c
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFE--AECEVMKNIRHRNHVKRISSCSNE----D---F  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~--~Ei~~l~~l~H~niv~~~~~~~~~----~---~  745 (827)
                      ++|...+.||+|+||.||+|+. +++.||||++.....   +.+.  .|+..++.++|+||+++++.+...    .   +
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~   88 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL   88 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred             HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCceEE
Confidence            5788899999999999999976 578999999865432   2334  444445568999999999865431    1   1


Q ss_pred             eeeeeeccC-------CCCCCHHHHHHHHHHHHHHHHHHHhcC------CCCeEEccCCCccee----------eecccc
Q 047196          746 KALDCLHST-------NCSLNIFDKLNIMIDVASALEYLHFSH------STPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       746 ~~l~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~Lh~~h------~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                      .+++++...       .....+.....++.++++||+|||..+      .++|+||||||+|||          |||+|+
T Consensus        89 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~  168 (336)
T 3g2f_A           89 LVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSM  168 (336)
T ss_dssp             EEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeecccee
Confidence            223333221       123467778899999999999997542      339999999999998          999998


Q ss_pred             cccCCCc-------cccccceecccccccccC
Q 047196          803 LLTGDRS-------MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~-------~~~~~~~gt~~Y~APE~l  827 (827)
                      .+.....       ......+||+.|+|||++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (336)
T 3g2f_A          169 RLTGNRLVRPGEEDNAAISEVGTIRYMAPEVL  200 (336)
T ss_dssp             ECSSSSCC---------CCTTSCGGGCCHHHH
T ss_pred             ecccccccCccccccccccCCCccceeCchhh
Confidence            7653321       111234589999999963

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.74  E-value=2.1e-18  Score=183.56  Aligned_cols=148  Identities=24%  Similarity=0.356  Sum_probs=111.9

Q ss_pred             cccccceEecCCceEEEEEEec-C---CcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce---e
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-D---GIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK---A  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~---g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~---~  747 (827)
                      .|...++||+|+||.||+|+.. +   +..||||++.... ....+.|.+|++++++++|||||++++++...+..   +
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            4556689999999999999853 2   2379999987543 34567899999999999999999999999765432   2


Q ss_pred             eeeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          748 LDCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       748 l~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      +++..         .....+++.+...++.++++||+|||   +.+|+||||||+||+          |||+++......
T Consensus       102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  178 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE  178 (298)
T ss_dssp             ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred             EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence            22221         11345677888899999999999996   568999999999998          999998654322


Q ss_pred             cc---ccccceeccccccccc
Q 047196          809 SM---IQTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~---~~~~~~gt~~Y~APE~  826 (827)
                      ..   ......+|+.|+|||+
T Consensus       179 ~~~~~~~~~~~~~~~y~aPE~  199 (298)
T 3pls_A          179 YYSVQQHRHARLPVKWTALES  199 (298)
T ss_dssp             GGCSCCSSCTTCGGGGSCHHH
T ss_pred             ccccccCcCCCCCccccChhh
Confidence            11   1122347899999996

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.74  E-value=1.2e-18  Score=184.88  Aligned_cols=149  Identities=26%  Similarity=0.385  Sum_probs=105.5

Q ss_pred             hcccccceEecCCceEEEEEEec--CCc--EEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH--DGI--EVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~--~g~--~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|+..+.||+|+||.||+|++.  +++  .||||++...   .....+.+.+|++++++++||||+++++++..+...+
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   97 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM   97 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCcee
Confidence            57888899999999999999853  333  6999998643   2334678999999999999999999999998765332


Q ss_pred             -eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          748 -LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       748 -l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                       +++...         ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++.....
T Consensus        98 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  174 (291)
T 1u46_A           98 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  174 (291)
T ss_dssp             EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             eEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEcccccccccccc
Confidence             222221         1234677788899999999999996   568999999999998          99999877544


Q ss_pred             Cccc--cccceeccccccccc
Q 047196          808 RSMI--QTETLVTIGYMAPGL  826 (827)
Q Consensus       808 ~~~~--~~~~~gt~~Y~APE~  826 (827)
                      ....  .....+|++|+|||+
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~  195 (291)
T 1u46_A          175 DDHYVMQEHRKVPFAWCAPES  195 (291)
T ss_dssp             CCEEEC-----CCGGGCCHHH
T ss_pred             ccchhhhccCCCCceeeCchh
Confidence            3221  122347889999996

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.74  E-value=5e-18  Score=187.62  Aligned_cols=148  Identities=24%  Similarity=0.336  Sum_probs=116.0

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCC-----ceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRN-----HVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~n-----iv~~~~~~~~~~~~  746 (827)
                      .++|...+.||+|+||.||+|+.. +|+.||||++... .....++.+|+++++.++ |++     +|++.+++...+..
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  131 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL  131 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence            467899999999999999999865 6889999999754 334567888999999886 553     89999998776655


Q ss_pred             eeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eeccccc
Q 047196          747 ALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRL  803 (827)
Q Consensus       747 ~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~  803 (827)
                      ++...+..           ...+++.....++.+++.||+|||. |+.+|+||||||+|||            |||+|+.
T Consensus       132 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~-~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~  210 (382)
T 2vx3_A          132 CLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT-PELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQ  210 (382)
T ss_dssp             EEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS-TTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEE
T ss_pred             EEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc-CCCCEEcCCCCcccEEEecCCCCcEEEEeccCcee
Confidence            44322211           1346788888999999999999974 5789999999999998            9999987


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....    ...+||+.|+|||++
T Consensus       211 ~~~~~----~~~~~t~~y~aPE~~  230 (382)
T 2vx3_A          211 LGQRI----YQYIQSRFYRSPEVL  230 (382)
T ss_dssp             TTCCC----CSSCSCGGGCCHHHH
T ss_pred             ccccc----ccccCCccccChHHH
Confidence            64321    234689999999973

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.74  E-value=3.2e-18  Score=181.63  Aligned_cols=150  Identities=24%  Similarity=0.433  Sum_probs=111.3

Q ss_pred             hcccccc-eEecCCceEEEEEEe---cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-e
Q 047196          675 EKFSKEN-LIGVGSFGSVYKGRL---HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-A  747 (827)
Q Consensus       675 ~~~~~~~-~iG~G~fg~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~  747 (827)
                      ++|...+ .||+|+||.||+|.+   .+++.||||++....  ....+++.+|++++++++||||+++++++..+... +
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv   95 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLV   95 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEE
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEEE
Confidence            4567666 899999999999964   246889999986542  23457899999999999999999999999554432 2


Q ss_pred             eeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          748 LDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       748 l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      +++...        ....+++.....++.++++||+|||   +.+|+||||||+||+          |||+++.......
T Consensus        96 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  172 (291)
T 1xbb_A           96 MEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  172 (291)
T ss_dssp             EECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS
T ss_pred             EEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCC
Confidence            222221        1234778888999999999999996   568999999999998          9999987654433


Q ss_pred             ccc--ccceecccccccccC
Q 047196          810 MIQ--TETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~--~~~~gt~~Y~APE~l  827 (827)
                      ...  ....+|+.|+|||++
T Consensus       173 ~~~~~~~~~~~~~y~aPE~~  192 (291)
T 1xbb_A          173 YYKAQTHGKWPVKWYAPECI  192 (291)
T ss_dssp             EEEC----CCCGGGCCHHHH
T ss_pred             cccccccCCCCceeeChHHh
Confidence            211  122367899999963

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.74  E-value=3.7e-18  Score=179.80  Aligned_cols=152  Identities=27%  Similarity=0.369  Sum_probs=113.0

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Ccee-
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKA-  747 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~~-  747 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++...  .....+.+.+|++++++++||||+++++++...  ...+ 
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            367888999999999999999875 6899999999653  234567899999999999999999999987542  2222 


Q ss_pred             -eeeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcC--CCCeEEccCCCccee----------eecccc
Q 047196          748 -LDCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSH--STPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       748 -l~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h--~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                       +++....            ...+++.....++.++++||+|||...  ..+|+||||||+||+          |||+++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~  164 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  164 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence             2332211            123778888999999999999998643  244999999999998          999988


Q ss_pred             cccCCCccccccceeccccccccc
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ........ .....||+.|+|||+
T Consensus       165 ~~~~~~~~-~~~~~~~~~y~aPE~  187 (279)
T 2w5a_A          165 ILNHDTSF-AKTFVGTPYYMSPEQ  187 (279)
T ss_dssp             HC---CHH-HHHHHSCCTTCCHHH
T ss_pred             eecccccc-ccccCCCccccChHH
Confidence            76543221 122358999999996

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.74  E-value=3.1e-18  Score=181.38  Aligned_cols=149  Identities=26%  Similarity=0.411  Sum_probs=117.9

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ..++|...+.||+|+||.||+|+.. +++.||||++....  ....+.+.+|++++++++||||+++++++......++.
T Consensus        20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   99 (287)
T 2wei_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (287)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence            3467999999999999999999875 68999999986432  23456789999999999999999999999877655443


Q ss_pred             eeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccC
Q 047196          750 CLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTG  806 (827)
Q Consensus       750 ~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~  806 (827)
                      ..+..          ...+++.+...++.++++||+|||   +.+|+||||||+||+             |||+++....
T Consensus       100 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~  176 (287)
T 2wei_A          100 GELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ  176 (287)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCC
T ss_pred             EEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceeecC
Confidence            32221          134677788899999999999996   568999999999998             8998876643


Q ss_pred             CCccccccceeccccccccc
Q 047196          807 DRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ....  ....||+.|+|||+
T Consensus       177 ~~~~--~~~~~~~~y~aPE~  194 (287)
T 2wei_A          177 NTKM--KDRIGTAYYIAPEV  194 (287)
T ss_dssp             CSSC--SCHHHHHTTCCHHH
T ss_pred             CCcc--ccccCcccccChHH
Confidence            3221  22348999999996

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.74  E-value=4.3e-19  Score=195.81  Aligned_cols=146  Identities=16%  Similarity=0.216  Sum_probs=105.1

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc---chHHHHHHHHHH---HHHHhcCCCCceEEE-------ee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN---CAMALKSFEAEC---EVMKNIRHRNHVKRI-------SS  739 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~Ei---~~l~~l~H~niv~~~-------~~  739 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++...   .....+.|.+|+   +++++++|||||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            45788889999999999999996 56999999998632   334567899999   566666899999987       44


Q ss_pred             eecCC-------------------ceeeeeeccC-------CC-------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q 047196          740 CSNED-------------------FKALDCLHST-------NC-------SLNIFDKLNIMIDVASALEYLHFSHSTPVI  786 (827)
Q Consensus       740 ~~~~~-------------------~~~l~~l~~~-------~~-------~l~~~~~~~i~~~ia~~L~~Lh~~h~~~ii  786 (827)
                      +..++                   +..+++....       ..       .+.+..+..|+.|+++||+|||   +.+|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~iv  228 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV  228 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCee
Confidence            43331                   1112222110       00       1113556779999999999996   46899


Q ss_pred             EccCCCccee----------eecccccccCCCccccccceecccccccccC
Q 047196          787 HCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       787 HrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ||||||+|||          |||+|+....    .....+| ++|+|||++
T Consensus       229 HrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~  274 (377)
T 3byv_A          229 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELE  274 (377)
T ss_dssp             CSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHH
T ss_pred             cCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhh
Confidence            9999999998          9999985322    1223457 999999974

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.6e-18  Score=187.04  Aligned_cols=158  Identities=27%  Similarity=0.352  Sum_probs=113.8

Q ss_pred             cchhHHHHHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeec
Q 047196          665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSN  742 (827)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~  742 (827)
                      +...++....++|+..+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|+++++++ +||||+++++++..
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   92 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIK   92 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence            33444445667899999999999999999986 478999999986543 2346789999999999 79999999999876


Q ss_pred             C------Ccee--eeeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------
Q 047196          743 E------DFKA--LDCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------  796 (827)
Q Consensus       743 ~------~~~~--l~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------  796 (827)
                      .      ...+  +++...          ....++......++.+++.||+|||   +.+|+||||||+||+        
T Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~k  169 (326)
T 2x7f_A           93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVK  169 (326)
T ss_dssp             CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEE
T ss_pred             ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEE
Confidence            3      2222  233221          1134667778889999999999996   568999999999998        


Q ss_pred             --eecccccccCCCccccccceecccccccccC
Q 047196          797 --DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                        |||+++........ .....||+.|+|||++
T Consensus       170 l~Dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~  201 (326)
T 2x7f_A          170 LVDFGVSAQLDRTVGR-RNTFIGTPYWMAPEVI  201 (326)
T ss_dssp             ECCCTTTC--------------CCGGGCCHHHH
T ss_pred             EeeCcCceecCcCccc-cccccCCccccChhhh
Confidence              99998776432221 1234589999999963

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.74  E-value=6.2e-18  Score=182.66  Aligned_cols=149  Identities=24%  Similarity=0.273  Sum_probs=99.7

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHH-HHHhcCCCCceEEEeeeecCCceee--e
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECE-VMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~-~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++.... .....++.+|+. +++.++|||||++++++...+..++  +
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e  101 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME  101 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence            57888899999999999999874 68999999997543 334455666666 7788899999999999987765443  2


Q ss_pred             eecc------------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          750 CLHS------------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       750 ~l~~------------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +...            ....+.+.....++.++++|+.|||..  .+|+||||||+||+          |||+++.....
T Consensus       102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~  179 (327)
T 3aln_A          102 LMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDS  179 (327)
T ss_dssp             CCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC----
T ss_pred             ecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCceecccc
Confidence            2221            134567778889999999999999742  27999999999998          99999876543


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..  .....||+.|+|||++
T Consensus       180 ~~--~~~~~gt~~y~aPE~~  197 (327)
T 3aln_A          180 IA--KTRDAGCRPYMAPERI  197 (327)
T ss_dssp             --------------------
T ss_pred             cc--cccCCCCccccCceee
Confidence            22  1223589999999974

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=1.1e-19  Score=210.24  Aligned_cols=216  Identities=16%  Similarity=0.119  Sum_probs=125.0

Q ss_pred             CCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEE-ccCCcC
Q 047196          314 SLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIY-ISNCNI  392 (827)
Q Consensus       314 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~-Ls~N~l  392 (827)
                      ..++|+.|+|+.|+++ .+|..++++++|+.|++++|......|..  +..+...+..|..++.+. +|+.|+ ++.|.+
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l--l~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~  422 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL--MRALDPLLYEKETLQYFS-TLKAVDPMRAAYL  422 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH--HHhcccccCCHHHHHHHH-hcccCcchhhccc
Confidence            5677888888888886 67888888888888887665421111100  001111222333333332 333333 222221


Q ss_pred             ccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccc
Q 047196          393 GGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCL  472 (827)
Q Consensus       393 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  472 (827)
                                 .+|..+.+++|.+++..+      ..|+.|+|++|++++ +|. +..+++|+.|+|++|+++ .+|..+
T Consensus       423 -----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~  482 (567)
T 1dce_A          423 -----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL  482 (567)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred             -----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence                       123333344445443222      246777777777775 555 777777777777777777 667777


Q ss_pred             cCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCC-cccccccccCceEEcccceeeeccccc---ccCCC
Q 047196          473 GNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPL-SLDIGNLRVVIGINLSRNNFSGDIPST---IGDLK  548 (827)
Q Consensus       473 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~ip~~---~~~l~  548 (827)
                      +.+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.+ |..++.++.|+.|+|++|+|++.+|..   +..++
T Consensus       483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence            777777777777777776 45 5666666666666666666665 666666666666666666666554422   22355


Q ss_pred             CCCEEEC
Q 047196          549 DLQNISL  555 (827)
Q Consensus       549 ~L~~L~L  555 (827)
                      +|+.||+
T Consensus       561 ~L~~L~l  567 (567)
T 1dce_A          561 SVSSILT  567 (567)
T ss_dssp             TCSEEEC
T ss_pred             ccCccCC
Confidence            5555543

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.73  E-value=6.9e-18  Score=181.09  Aligned_cols=148  Identities=29%  Similarity=0.335  Sum_probs=112.4

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ..++|+..+.||+|+||.||+|+.. +|+.||||++....  ..+++.+|++++++++||||+++++++......++...
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  104 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME  104 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence            3467888999999999999999875 58999999986543  24578999999999999999999999987765444222


Q ss_pred             cc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          752 HS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       752 ~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +.           ....+++.....++.+++.|+.|||   +.+|+||||||+||+          |||+++........
T Consensus       105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~  181 (314)
T 3com_A          105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAK  181 (314)
T ss_dssp             CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSC
T ss_pred             cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccc
Confidence            21           1345778888999999999999996   568999999999998          99999876543221


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                       .....||+.|+|||+
T Consensus       182 -~~~~~~~~~y~aPE~  196 (314)
T 3com_A          182 -RNTVIGTPFWMAPEV  196 (314)
T ss_dssp             -BCCCCSCGGGCCHHH
T ss_pred             -cCccCCCCCccChhh
Confidence             223458999999996

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.73  E-value=3.2e-18  Score=181.89  Aligned_cols=149  Identities=26%  Similarity=0.409  Sum_probs=110.7

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecC-Cceee--
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNE-DFKAL--  748 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~-~~~~l--  748 (827)
                      ..++|+..+.||+|+||.||+|+. .+++.||||++....  ..+++.+|++++++++|++++..++.+... +..++  
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence            456799999999999999999986 578999999875432  224578999999999999988888777543 33232  


Q ss_pred             eeec--------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCC
Q 047196          749 DCLH--------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGD  807 (827)
Q Consensus       749 ~~l~--------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~  807 (827)
                      ++..        .....+++.....++.++++||+|||   +.+|+||||||+||+             |||+++.....
T Consensus        85 e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  161 (296)
T 4hgt_A           85 ELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             ECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             EccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCc
Confidence            3221        11345788889999999999999996   568999999999998             99999876543


Q ss_pred             Ccc------ccccceeccccccccc
Q 047196          808 RSM------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       808 ~~~------~~~~~~gt~~Y~APE~  826 (827)
                      ...      ......||+.|+|||+
T Consensus       162 ~~~~~~~~~~~~~~~gt~~y~aPE~  186 (296)
T 4hgt_A          162 RTHQHIPYRENKNLTGTARYASINT  186 (296)
T ss_dssp             TTCCBCCCCCSCCCCSCGGGCCHHH
T ss_pred             ccCccCCCCcccccCCCccccchHH
Confidence            321      1123458999999996

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.73  E-value=3.9e-18  Score=181.30  Aligned_cols=148  Identities=26%  Similarity=0.411  Sum_probs=113.6

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecC-Ccee--ee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNE-DFKA--LD  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~-~~~~--l~  749 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++.....  .+++.+|++++++++|+++++.+.++... ...+  ++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence            46788999999999999999986 5789999999865432  24688999999999999988877776443 3222  23


Q ss_pred             eec--------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCC
Q 047196          750 CLH--------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDR  808 (827)
Q Consensus       750 ~l~--------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~  808 (827)
                      +..        .....+++.+...++.++++||+|||   +.+|+||||||+||+             |||+++......
T Consensus        86 ~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~  162 (296)
T 3uzp_A           86 LLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR  162 (296)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             ecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccc
Confidence            321        11345778888999999999999996   568999999999998             999998765443


Q ss_pred             cc------ccccceeccccccccc
Q 047196          809 SM------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       809 ~~------~~~~~~gt~~Y~APE~  826 (827)
                      ..      ......||+.|+|||+
T Consensus       163 ~~~~~~~~~~~~~~gt~~y~aPE~  186 (296)
T 3uzp_A          163 THQHIPYRENKNLTGTARYASINT  186 (296)
T ss_dssp             TCCBCCCCCSCCCCSCTTTCCHHH
T ss_pred             cccccccccccccccccccCChhh
Confidence            21      1123458999999996

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.73  E-value=2.9e-18  Score=186.77  Aligned_cols=150  Identities=19%  Similarity=0.221  Sum_probs=107.5

Q ss_pred             hcccccceEecCCceEEEEEEec----CCcEEEEEEEcccchH-----------HHHHHHHHHHHHHhcCCCCceEEEee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNCAM-----------ALKSFEAECEVMKNIRHRNHVKRISS  739 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~-----------~~~~~~~Ei~~l~~l~H~niv~~~~~  739 (827)
                      ++|...+.||+|+||.||+|+..    ++..||||+.......           ..+.+.+|+..++.++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            56888999999999999999875    5788999998654311           12347789999999999999999999


Q ss_pred             eec----CCceee--eeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------
Q 047196          740 CSN----EDFKAL--DCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------  796 (827)
Q Consensus       740 ~~~----~~~~~l--~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------  796 (827)
                      +..    ....++  ++...       ....+++.+...++.++++||+|||   +.+|+||||||+||+          
T Consensus       117 ~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~k  193 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPDQVY  193 (345)
T ss_dssp             EEEESSSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTTSEE
T ss_pred             cccccCCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCCcEE
Confidence            876    333332  33210       1225788899999999999999996   568999999999998          


Q ss_pred             --eecccccccCCCcc------ccccceecccccccccC
Q 047196          797 --DFGIGRLLTGDRSM------IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --DFGla~~~~~~~~~------~~~~~~gt~~Y~APE~l  827 (827)
                        |||+|+.+......      ......||+.|+|||++
T Consensus       194 L~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  232 (345)
T 2v62_A          194 LADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAH  232 (345)
T ss_dssp             ECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHH
T ss_pred             EEeCCCceecccccccccchhccccccCCCccccCHHHh
Confidence              99999876432211      11234589999999963

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.73  E-value=5.2e-18  Score=183.27  Aligned_cols=148  Identities=28%  Similarity=0.462  Sum_probs=110.4

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcE--EEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIE--VAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~--vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|...+.||+|+||.||+|+.. +|..  ||||++.... ....+.+.+|+++++++ +||||+++++++...+..++.
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            57888899999999999999864 5664  4999986532 33456789999999999 899999999999887755443


Q ss_pred             eeccC--------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          750 CLHST--------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       750 ~l~~~--------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                      ..+..                          ...+++.+...++.++++||+|||   +.+|+||||||+||+       
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~  181 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA  181 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeE
Confidence            22211                          124677888999999999999996   578999999999998       


Q ss_pred             ---eecccccccCCCccccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                         |||+++.......  .....+|+.|+|||++
T Consensus       182 kL~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~  213 (327)
T 1fvr_A          182 KIADFGLSRGQEVYVK--KTMGRLPVRWMAIESL  213 (327)
T ss_dssp             EECCTTCEESSCEECC--C----CCTTTCCHHHH
T ss_pred             EEcccCcCcccccccc--ccCCCCCccccChhhh
Confidence               9999874322111  1223468899999963

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.73  E-value=5.1e-18  Score=178.74  Aligned_cols=143  Identities=27%  Similarity=0.430  Sum_probs=104.3

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-cee--eee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FKA--LDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~~--l~~  750 (827)
                      .++|+..+.||+|+||.||+|+.. |+.||||++....  ..+.+.+|++++++++|||+|++++++.+.. ..+  +++
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   96 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   96 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred             hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence            357888999999999999999875 7899999986543  4567899999999999999999999976543 222  232


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .....          ..+++.....++.++++|++|||   +.+|+||||||+||+          |||+++......  
T Consensus        97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~--  171 (278)
T 1byg_A           97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ--  171 (278)
T ss_dssp             CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred             CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeeccccccccccc--
Confidence            22110          11566677889999999999996   568999999999998          999987654321  


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                        ....+++.|+|||+
T Consensus       172 --~~~~~~~~y~aPE~  185 (278)
T 1byg_A          172 --DTGKLPVKWTAPEA  185 (278)
T ss_dssp             ------CCTTTSCHHH
T ss_pred             --cCCCccccccCHHH
Confidence              12347889999996

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.73  E-value=2.9e-18  Score=184.66  Aligned_cols=148  Identities=25%  Similarity=0.315  Sum_probs=115.5

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch------HHHHHHHHHHHHHHhcC--CCCceEEEeeeecCC
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA------MALKSFEAECEVMKNIR--HRNHVKRISSCSNED  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~Ei~~l~~l~--H~niv~~~~~~~~~~  744 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++.....      ...+.+.+|++++++++  |+|++++++++..++
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~  121 (320)
T 3a99_A           42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD  121 (320)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence            45688899999999999999986 4689999999865321      12245778999999997  599999999998876


Q ss_pred             ceeeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccc
Q 047196          745 FKALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGR  802 (827)
Q Consensus       745 ~~~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~  802 (827)
                      ..++...+..           ...+++.....++.++++||+|||   +.+|+||||||+||+           |||+++
T Consensus       122 ~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~  198 (320)
T 3a99_A          122 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGA  198 (320)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             cEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence            5544332221           235677788899999999999996   568999999999998           999998


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .......   ....||+.|+|||++
T Consensus       199 ~~~~~~~---~~~~gt~~y~aPE~~  220 (320)
T 3a99_A          199 LLKDTVY---TDFDGTRVYSPPEWI  220 (320)
T ss_dssp             ECCSSCB---CCCCSCGGGSCHHHH
T ss_pred             ccccccc---cCCCCCccCCChHHh
Confidence            7653321   234589999999963

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.73  E-value=1.1e-18  Score=186.16  Aligned_cols=150  Identities=25%  Similarity=0.318  Sum_probs=99.3

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .++|...+.||+|+||.||+|+.. +++.||||++.... ....+++.+|++++++++||||+++++++...+..++...
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   93 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMK   93 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEeh
Confidence            467888999999999999999864 68999999986432 3345678999999999999999999999987765544222


Q ss_pred             ccC------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          752 HST------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       752 ~~~------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      +..                  ...+++.....++.++++|++|||   +.+|+||||||+||+          |||+++.
T Consensus        94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  170 (303)
T 2vwi_A           94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAF  170 (303)
T ss_dssp             CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred             hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence            211                  234678888999999999999996   568999999999998          9999877


Q ss_pred             ccCCCcc----ccccceeccccccccc
Q 047196          804 LTGDRSM----IQTETLVTIGYMAPGL  826 (827)
Q Consensus       804 ~~~~~~~----~~~~~~gt~~Y~APE~  826 (827)
                      .......    ......||+.|+|||+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~  197 (303)
T 2vwi_A          171 LATGGDITRNKVRKTFVGTPCWMAPEV  197 (303)
T ss_dssp             CC---------------CCCTTCCHHH
T ss_pred             eccCCCccchhhhcccCCCccccCHHH
Confidence            6433211    1122458999999996

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.73  E-value=1.9e-18  Score=190.25  Aligned_cols=147  Identities=14%  Similarity=0.157  Sum_probs=94.3

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhc--CCCCceEEEe-------ee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNI--RHRNHVKRIS-------SC  740 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l--~H~niv~~~~-------~~  740 (827)
                      ...|...+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+++++.+  +|||+|+++.       .+
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            345888899999999999999965 78999999997643   23456788885555444  6999888553       22


Q ss_pred             ecCC-------------------ceeeeeecc--------CCCCCCHHHH------HHHHHHHHHHHHHHHhcCCCCeEE
Q 047196          741 SNED-------------------FKALDCLHS--------TNCSLNIFDK------LNIMIDVASALEYLHFSHSTPVIH  787 (827)
Q Consensus       741 ~~~~-------------------~~~l~~l~~--------~~~~l~~~~~------~~i~~~ia~~L~~Lh~~h~~~iiH  787 (827)
                      ....                   +.+++++..        ....+.+..+      ..++.++++||+|||   +.+|+|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~ivH  217 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLVH  217 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEEE
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCcc
Confidence            2111                   122222221        0111233334      677899999999996   568999


Q ss_pred             ccCCCccee----------eecccccccCCCccccccceecccccccccC
Q 047196          788 CDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       788 rDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      |||||+|||          |||+|+......    ....+|+.|+|||++
T Consensus       218 rDikp~NIll~~~~~~kL~DFG~a~~~~~~~----~~~~~t~~y~aPE~~  263 (371)
T 3q60_A          218 GHFTPDNLFIMPDGRLMLGDVSALWKVGTRG----PASSVPVTYAPREFL  263 (371)
T ss_dssp             TTCSGGGEEECTTSCEEECCGGGEEETTCEE----EGGGSCGGGCCHHHH
T ss_pred             CcCCHHHEEECCCCCEEEEecceeeecCCCc----cCccCCcCCcChhhc
Confidence            999999998          999998654221    134477999999973

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.72  E-value=4.8e-18  Score=183.30  Aligned_cols=149  Identities=28%  Similarity=0.451  Sum_probs=111.1

Q ss_pred             HhhcccccceEecCCceEEEEEEe--cCCcEEEEEEEcccch--HHHHHHHHHHHHHHhc---CCCCceEEEeeeec---
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL--HDGIEVAIKVFHQNCA--MALKSFEAECEVMKNI---RHRNHVKRISSCSN---  742 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l---~H~niv~~~~~~~~---  742 (827)
                      +.++|+..+.||+|+||.||+|+.  .+|+.||||++.....  .....+.+|+++++++   +||||+++++++..   
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            457899999999999999999987  3688999999864321  1223567788877776   89999999999862   


Q ss_pred             --CCcee--eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eec
Q 047196          743 --EDFKA--LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFG  799 (827)
Q Consensus       743 --~~~~~--l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFG  799 (827)
                        ....+  +++...         ....+.+.....++.++++||+|||   +.+|+||||||+||+          |||
T Consensus        89 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Dfg  165 (326)
T 1blx_A           89 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFG  165 (326)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSCC
T ss_pred             CCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEecCc
Confidence              22222  222221         1123677888899999999999996   568999999999998          999


Q ss_pred             ccccccCCCccccccceeccccccccc
Q 047196          800 IGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       800 la~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      +++......  ......||+.|+|||+
T Consensus       166 ~~~~~~~~~--~~~~~~~~~~y~aPE~  190 (326)
T 1blx_A          166 LARIYSFQM--ALTSVVVTLWYRAPEV  190 (326)
T ss_dssp             SCCCCCGGG--GGCCCCCCCTTCCHHH
T ss_pred             ccccccCCC--CccccccccceeCHHH
Confidence            998654322  1233458999999996

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.72  E-value=2.2e-18  Score=188.29  Aligned_cols=144  Identities=13%  Similarity=0.232  Sum_probs=108.6

Q ss_pred             hcccccceEecCCceEEEEEEecC---------CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceE----------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD---------GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVK----------  735 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~---------g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~----------  735 (827)
                      ++|...+.||+|+||.||+|+...         ++.||||++...     +.+.+|++++++++|||+|+          
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL  116 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence            578889999999999999998753         789999998654     35789999999999999987          


Q ss_pred             -----EEeeeec-CCceee--eeecc--------C-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          736 -----RISSCSN-EDFKAL--DCLHS--------T-NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       736 -----~~~~~~~-~~~~~l--~~l~~--------~-~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                           +++++.. ....++  ++...        . ...+++.+...++.++++||+|||   +.+|+||||||+||+  
T Consensus       117 ~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl~~  193 (352)
T 2jii_A          117 LAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIFVD  193 (352)
T ss_dssp             CSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEEEE
T ss_pred             cCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEEc
Confidence                 4556554 333222  33210        1 245788889999999999999996   568999999999998  


Q ss_pred             ----------eecccccccCCCcc------ccccceeccccccccc
Q 047196          797 ----------DFGIGRLLTGDRSM------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       797 ----------DFGla~~~~~~~~~------~~~~~~gt~~Y~APE~  826 (827)
                                |||+++.+......      ......||+.|+|||+
T Consensus       194 ~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  239 (352)
T 2jii_A          194 PEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDL  239 (352)
T ss_dssp             TTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHH
T ss_pred             CCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHH
Confidence                      99999876432211      1123358999999996

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=179.23  Aligned_cols=150  Identities=22%  Similarity=0.278  Sum_probs=102.0

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hH-HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~-~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++.... .. ..+.+..+..+++.++||||+++++++...+..++..
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            357888899999999999999875 68999999996542 22 2334455566788999999999999998877554432


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+.+.....++.++++||+|||..  .+|+||||||+||+          |||+++....... 
T Consensus       104 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~-  180 (318)
T 2dyl_A          104 ELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA-  180 (318)
T ss_dssp             CCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSCEEECCCTTC---------
T ss_pred             eccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcc-
Confidence            2211          24567778889999999999999742  27999999999998          9999876644322 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       .....||+.|+|||++
T Consensus       181 -~~~~~~~~~y~aPE~~  196 (318)
T 2dyl_A          181 -KDRSAGCAAYMAPERI  196 (318)
T ss_dssp             -------CCTTCCHHHH
T ss_pred             -ccccCCCccccChhhc
Confidence             1234589999999973

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.72  E-value=3.9e-18  Score=182.92  Aligned_cols=149  Identities=25%  Similarity=0.320  Sum_probs=109.0

Q ss_pred             HHhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch------HHHHHHHHHHHHHHhc----CCCCceEEEeee
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA------MALKSFEAECEVMKNI----RHRNHVKRISSC  740 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~Ei~~l~~l----~H~niv~~~~~~  740 (827)
                      ...++|...+.||+|+||.||+|+. .+|+.||||++.....      .....+.+|+++++++    +|+||+++++++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~  107 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF  107 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence            3456799999999999999999986 4689999999865432      1223467899999999    899999999998


Q ss_pred             ecCCceeeeeec-c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------ee
Q 047196          741 SNEDFKALDCLH-S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DF  798 (827)
Q Consensus       741 ~~~~~~~l~~l~-~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DF  798 (827)
                      ...+..++...+ .          ....+++.....++.++++||+|||   +.+|+||||||+||+           ||
T Consensus       108 ~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~df  184 (312)
T 2iwi_A          108 ETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDF  184 (312)
T ss_dssp             -----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred             ecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEEEEc
Confidence            766544432222 1          1234778888999999999999997   457999999999998           99


Q ss_pred             cccccccCCCccccccceeccccccccc
Q 047196          799 GIGRLLTGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       799 Gla~~~~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      |+++.......   ....||++|+|||+
T Consensus       185 g~~~~~~~~~~---~~~~~~~~y~aPE~  209 (312)
T 2iwi_A          185 GSGALLHDEPY---TDFDGTRVYSPPEW  209 (312)
T ss_dssp             SSCEECCSSCB---CCCCSCTTTSCHHH
T ss_pred             chhhhcccCcc---cccCCcccccCcee
Confidence            99887654322   23458999999996

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.72  E-value=6.6e-18  Score=189.76  Aligned_cols=145  Identities=26%  Similarity=0.375  Sum_probs=102.4

Q ss_pred             ccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeeeeccCC
Q 047196          677 FSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDCLHSTN  755 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~l~~~~  755 (827)
                      |...++||+|+||+||.+...+|+.||||++....   .+.+.+|+++++++ +|||||++++++......++...+...
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~g   93 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNL   93 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCSE
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCCC
Confidence            44567899999999987766679999999986532   34678999999987 899999999998877755443222110


Q ss_pred             ---------CC-------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------------------
Q 047196          756 ---------CS-------LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------------------  796 (827)
Q Consensus       756 ---------~~-------l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------------------  796 (827)
                               ..       ..+.....++.++++||+|||   +.+|+||||||+||+                       
T Consensus        94 sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~  170 (434)
T 2rio_A           94 NLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILIS  170 (434)
T ss_dssp             EHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEEC
T ss_pred             CHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEEEc
Confidence                     00       112234679999999999996   568999999999986                       


Q ss_pred             eecccccccCCCccc---cccceecccccccccC
Q 047196          797 DFGIGRLLTGDRSMI---QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 DFGla~~~~~~~~~~---~~~~~gt~~Y~APE~l  827 (827)
                      |||+|+.........   ....+||++|+|||++
T Consensus       171 DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  204 (434)
T 2rio_A          171 DFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELL  204 (434)
T ss_dssp             CCTTCEECCC--------------CCTTSCHHHH
T ss_pred             ccccceecCCCCccceeeecCCCCCCCccCHHHh
Confidence            789888765433211   1234599999999963

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=7.7e-18  Score=167.71  Aligned_cols=154  Identities=16%  Similarity=0.200  Sum_probs=86.2

Q ss_pred             cCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCc
Q 047196          401 SNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRS  480 (827)
Q Consensus       401 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  480 (827)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34455555555555555 233 3555555555555555443  2234555566666666666665555555666666666


Q ss_pred             cccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcc
Q 047196          481 PDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGL  560 (827)
Q Consensus       481 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l  560 (827)
                      |++++|.+++..|..+..+++|+.|++++|.+.+.+| .+..++.|+.|++++|++++ ++ .+..+++|+.|++++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            6666666665555556666666666666665223334 45566666666666666664 33 556666666666666665


Q ss_pred             e
Q 047196          561 E  561 (827)
Q Consensus       561 ~  561 (827)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.7e-17  Score=173.05  Aligned_cols=167  Identities=19%  Similarity=0.249  Sum_probs=119.6

Q ss_pred             EEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCC
Q 047196          100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDS  179 (827)
Q Consensus       100 v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~  179 (827)
                      ++.++++.+.+++..  .+..+++|++|++++|+++ .+| .+..+++|++|+|++|++++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            445566677766543  5777888888888888887 445 67888888888888888887655  77778888888888


Q ss_pred             CCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccc
Q 047196          180 DKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEI  259 (827)
Q Consensus       180 n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  259 (827)
                      |++++ +|....   ++|++|++++|.+++.  ..+.++++|+.|++++|++++. | .++.+++|++|++++|++++. 
T Consensus        95 N~l~~-l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           95 NRLKN-LNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SCCSC-CTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CccCC-cCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence            87774 443222   4777777777777753  2477777777777777777754 3 567777777777777777755 


Q ss_pred             cccccCcCCCcEEEeecccCccc
Q 047196          260 PHEIGYLPNLENLVLGFNNLVGV  282 (827)
Q Consensus       260 p~~~~~l~~L~~L~Ls~N~l~~~  282 (827)
                       ..+..+++|++|++++|.+++.
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHhccCCCCCEEeCCCCcccCC
Confidence             5677777777777777777654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.71  E-value=1.4e-17  Score=184.89  Aligned_cols=118  Identities=22%  Similarity=0.322  Sum_probs=93.2

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC--------CCCceEEEeeeec---
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR--------HRNHVKRISSCSN---  742 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~--------H~niv~~~~~~~~---  742 (827)
                      ++|...+.||+|+||.||+|+. .+|+.||||++... ....+.+.+|++++++++        |+|||++++++..   
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~  115 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV  115 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence            5788899999999999999986 46899999999654 344567899999999997        7789999998862   


Q ss_pred             -CCceee--eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEEccCCCccee
Q 047196          743 -EDFKAL--DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHST-PVIHCDLKPKNVF  796 (827)
Q Consensus       743 -~~~~~l--~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~-~iiHrDlK~~NIl  796 (827)
                       ....++  +++..         ....+++.....|+.|+++||+|||.   + +|+||||||+|||
T Consensus       116 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIl  179 (397)
T 1wak_A          116 NGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENIL  179 (397)
T ss_dssp             TEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEE
T ss_pred             CCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHee
Confidence             222222  22211         11347788889999999999999974   4 8999999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2.3e-17  Score=164.26  Aligned_cols=155  Identities=17%  Similarity=0.196  Sum_probs=131.0

Q ss_pred             hcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCcccccccccc
Q 047196          376 GNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLN  455 (827)
Q Consensus       376 ~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  455 (827)
                      ..+. +|+.|++++|.++ .+| .+..+++|+.|++++|.++.  +..+..+++|++|++++|++++..|..+..+++|+
T Consensus        41 ~~l~-~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMN-SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHH-TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcC-CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            3444 7999999999998 566 68889999999999997753  34788999999999999999988888999999999


Q ss_pred             EEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccce
Q 047196          456 TLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNN  535 (827)
Q Consensus       456 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~  535 (827)
                      +|++++|++++..|..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+++. + .+..++.|+.|++++|+
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            99999999998888899999999999999998434455 688999999999999999874 3 78899999999999999


Q ss_pred             eee
Q 047196          536 FSG  538 (827)
Q Consensus       536 l~g  538 (827)
                      |.+
T Consensus       193 i~~  195 (197)
T 4ezg_A          193 IGG  195 (197)
T ss_dssp             ---
T ss_pred             cCC
Confidence            864

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.71  E-value=3.5e-18  Score=197.61  Aligned_cols=138  Identities=17%  Similarity=0.098  Sum_probs=96.9

Q ss_pred             EecCCceEEEEEEe-cCCcEEEEEEEcccc----------hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeeee
Q 047196          683 IGVGSFGSVYKGRL-HDGIEVAIKVFHQNC----------AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       683 iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~----------~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      .+.|+.|.++.++. -.|+.||||++....          ....++|.+|+++|+++ .|+||+++++++.++...++..
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            56677777666653 358999999996431          22356799999999999 6999999999998887665543


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..+          +.++   ..+|+.||+.||+|+|   +++||||||||+|||          |||+|+....+...
T Consensus       322 Eyv~G~~L~d~i~~~~~l~---~~~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~  395 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGEEID---REKILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSW  395 (569)
T ss_dssp             ECCCSEEHHHHHHTTCCCC---HHHHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CC
T ss_pred             ecCCCCcHHHHHHhCCCCC---HHHHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCCCcc
Confidence            33322          2233   3469999999999995   678999999999998          99999987654332


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||++|||||++
T Consensus       396 -~~t~vGTp~YmAPE~l  411 (569)
T 4azs_A          396 -PTNLVQSFFVFVNELF  411 (569)
T ss_dssp             -SHHHHHHHHHHHHHHC
T ss_pred             -ccCceechhhccHHHh
Confidence             2335699999999974

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.71  E-value=1.6e-17  Score=182.73  Aligned_cols=145  Identities=19%  Similarity=0.337  Sum_probs=112.3

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-----------CCCceEEEeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-----------HRNHVKRISSCSN  742 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-----------H~niv~~~~~~~~  742 (827)
                      ++|...+.||+|+||.||+|+. .+|+.||||++... ....+.+.+|++++++++           |+||+++++++..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            5788899999999999999986 56899999999754 334567889999999887           8899999998865


Q ss_pred             CC----ceeeeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEEccCCCccee----------
Q 047196          743 ED----FKALDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHST-PVIHCDLKPKNVF----------  796 (827)
Q Consensus       743 ~~----~~~l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~-~iiHrDlK~~NIl----------  796 (827)
                      ..    ..++...+.           ....+++.....++.+++.||+|||.   + +|+||||||+||+          
T Consensus        98 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~~~~~~~~~  174 (373)
T 1q8y_A           98 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLMEIVDSPENL  174 (373)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEEEEETTTTE
T ss_pred             cCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEeccCCCcCc
Confidence            32    222211111           12347788888999999999999974   4 8999999999987          


Q ss_pred             ------eecccccccCCCccccccceecccccccccC
Q 047196          797 ------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                            |||+|+......    ....||++|+|||++
T Consensus       175 ~~~kl~Dfg~a~~~~~~~----~~~~~t~~y~aPE~~  207 (373)
T 1q8y_A          175 IQIKIADLGNACWYDEHY----TNSIQTREYRSPEVL  207 (373)
T ss_dssp             EEEEECCCTTCEETTBCC----CSCCSCGGGCCHHHH
T ss_pred             ceEEEcccccccccCCCC----CCCCCCccccCcHHH
Confidence                  899887664321    234589999999963

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.71  E-value=1.9e-17  Score=187.48  Aligned_cols=149  Identities=23%  Similarity=0.364  Sum_probs=111.2

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEee-eecCCceee--e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISS-CSNEDFKAL--D  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~-~~~~~~~~l--~  749 (827)
                      .++|...++||+|+||.||+|+. .+|+.||||++.....  .+++.+|+++++.++|++.+..+.+ +...+..++  +
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            35789999999999999999986 5689999998764432  2357899999999998665554444 444443333  3


Q ss_pred             eecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCC
Q 047196          750 CLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDR  808 (827)
Q Consensus       750 ~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~  808 (827)
                      ++..        ....+++.....|+.+++.||+|||   +.+|+||||||+|||             |||+|+.+....
T Consensus        84 ~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~  160 (483)
T 3sv0_A           84 LLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTS  160 (483)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCc
Confidence            3311        1345788889999999999999996   568999999999998             999998775433


Q ss_pred             ccc------cccceecccccccccC
Q 047196          809 SMI------QTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~------~~~~~gt~~Y~APE~l  827 (827)
                      ...      .....||+.|+|||++
T Consensus       161 ~~~~~~~~~~~~~~gt~~Y~aPE~~  185 (483)
T 3sv0_A          161 THQHIPYRENKNLTGTARYASVNTH  185 (483)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             cccccccccccccCCCccccCHHHh
Confidence            211      1234589999999963

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=9.7e-18  Score=174.96  Aligned_cols=168  Identities=17%  Similarity=0.246  Sum_probs=112.0

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      .+..+++++|.+++..  .+..+++|+.|++++|.++. +| .+..+++|+.|+|++|++++..|  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4556667777776433  45667777777777777764 34 56677777777777777775443  6777777777777


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++ +|....  ++|++|++++|.+++.  +.+..+++|+.||+++|++++. + .++.++.|+.|++++|++++. 
T Consensus        94 ~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKN-LNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSC-CTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCC-cCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence            777764 343222  6777777777777663  2466677777777777777664 2 466677777777777777765 


Q ss_pred             cccccCCCCCCEEECCCCcceee
Q 047196          541 PSTIGDLKDLQNISLACNGLEGL  563 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g~  563 (827)
                       ..+..+++|+.|++++|.+++.
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHhccCCCCCEEeCCCCcccCC
Confidence             5566777777777777776654

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.70  E-value=3.6e-17  Score=177.26  Aligned_cols=145  Identities=19%  Similarity=0.328  Sum_probs=111.9

Q ss_pred             hcccccceEecCCceEEEEEEe--cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCC------ceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL--HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN------HVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~~~~~~~~~~~~  746 (827)
                      ++|+..+.||+|+||.||+|..  .+|+.||||++... ....+.+.+|+++++.++|++      ++++++++...+..
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~   92 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI   92 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence            5788899999999999999986  36889999999654 334567899999999998765      89999998877655


Q ss_pred             eeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------------
Q 047196          747 ALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------------  796 (827)
Q Consensus       747 ~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------------  796 (827)
                      ++...+..           ...+++.....++.++++||+|||   +.+|+||||||+||+                   
T Consensus        93 ~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~  169 (339)
T 1z57_A           93 CIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRDER  169 (339)
T ss_dssp             EEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CEEE
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccccccc
Confidence            44322211           124667788899999999999996   568999999999986                   


Q ss_pred             ----------eecccccccCCCccccccceecccccccccC
Q 047196          797 ----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                                |||+++.....    .....||++|+|||++
T Consensus       170 ~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~  206 (339)
T 1z57_A          170 TLINPDIKVVDFGSATYDDEH----HSTLVSTRHYRAPEVI  206 (339)
T ss_dssp             EESCCCEEECCCSSCEETTSC----CCSSCSCGGGCCHHHH
T ss_pred             cccCCCceEeeCcccccCccc----cccccCCccccChHHh
Confidence                      67777654322    1234589999999963

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.7e-17  Score=164.49  Aligned_cols=130  Identities=25%  Similarity=0.339  Sum_probs=74.0

Q ss_pred             cEEEccCCcCccccCccccCCCCCceEeccCccccccccc-cccCCCCCcEEECCCCCCCCCCCccccccccccEEecCC
Q 047196          383 ENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPV-TFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAG  461 (827)
Q Consensus       383 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  461 (827)
                      +.+++++|+++ .+|..+.  .+|+.|++++|++++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            55666666664 4444332  2566666666666554443 355566666666666666655555565666666666666


Q ss_pred             CcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCC
Q 047196          462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGP  515 (827)
Q Consensus       462 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  515 (827)
                      |++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|.+++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            666555555555555555555555555555555555555555555555555543

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.69  E-value=6.4e-17  Score=176.53  Aligned_cols=145  Identities=23%  Similarity=0.343  Sum_probs=112.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CC-cEEEEEEEcccchHHHHHHHHHHHHHHhcCCCC------ceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DG-IEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN------HVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g-~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~~~~~~~~~~~~  746 (827)
                      ++|...+.||+|+||.||+|+.. ++ +.||||++... ....+.+.+|++++++++|++      ++.+.+++......
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM   97 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence            57888999999999999999864 44 78999999654 334567889999999998877      88888888776654


Q ss_pred             eeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------------
Q 047196          747 ALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------------  796 (827)
Q Consensus       747 ~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------------  796 (827)
                      ++...+..           ...+++.+...++.++++||+|||   +.+|+||||||+||+                   
T Consensus        98 ~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~  174 (355)
T 2eu9_A           98 CIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEK  174 (355)
T ss_dssp             EEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCCEE
T ss_pred             EEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccccccccc
Confidence            44222211           134778888999999999999996   678999999999985                   


Q ss_pred             ----------eecccccccCCCccccccceecccccccccC
Q 047196          797 ----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                                |||+++......    ....||+.|+|||++
T Consensus       175 ~~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          175 SVKNTSIRVADFGSATFDHEHH----TTIVATRHYRPPEVI  211 (355)
T ss_dssp             EESCCCEEECCCTTCEETTSCC----CSSCSCGGGCCHHHH
T ss_pred             ccCCCcEEEeecCccccccccc----cCCcCCCcccCCeee
Confidence                      788876543221    234589999999963

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.69  E-value=3.1e-18  Score=184.15  Aligned_cols=149  Identities=30%  Similarity=0.433  Sum_probs=111.2

Q ss_pred             HhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ..++|+..+.||+|+||.||+|+..+  .||||++....  ....+.|.+|++++++++|+||+++++++...+..++..
T Consensus        31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~  108 (319)
T 2y4i_B           31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT  108 (319)
T ss_dssp             CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred             CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence            34678889999999999999998754  49999986432  223456789999999999999999999998876544422


Q ss_pred             ecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eecccccccCCCc-
Q 047196          751 LHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLTGDRS-  809 (827)
Q Consensus       751 l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~~~~~-  809 (827)
                      .+.           ....+++.+...++.++++||+|||   +.+|+||||||+||+         |||+++....... 
T Consensus       109 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~~~~~~l~Dfg~~~~~~~~~~~  185 (319)
T 2y4i_B          109 SLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYDNGKVVITDFGLFSISGVLQAG  185 (319)
T ss_dssp             BCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC--CCEECCCSCCC--------
T ss_pred             ecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEeCCCEEEeecCCcccccccccc
Confidence            221           1234677888999999999999996   568999999999998         9999876532111 


Q ss_pred             ---cccccceeccccccccc
Q 047196          810 ---MIQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ---~~~~~~~gt~~Y~APE~  826 (827)
                         .......||++|+|||+
T Consensus       186 ~~~~~~~~~~g~~~y~aPE~  205 (319)
T 2y4i_B          186 RREDKLRIQNGWLCHLAPEI  205 (319)
T ss_dssp             --CCSCBCCSGGGGTSCHHH
T ss_pred             ccccccccCCCcccccChHH
Confidence               11122348999999996

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.69  E-value=1.3e-17  Score=193.19  Aligned_cols=149  Identities=31%  Similarity=0.460  Sum_probs=113.6

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeec------CCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSN------EDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~------~~~  745 (827)
                      .++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++|||||++++++..      .+.
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            36799999999999999999986 46899999998654 34456789999999999999999999998754      222


Q ss_pred             --eeeeeeccC-----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eec
Q 047196          746 --KALDCLHST-----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFG  799 (827)
Q Consensus       746 --~~l~~l~~~-----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFG  799 (827)
                        .+++++...           ...+++.....++.+++.|++|||   +.+|+||||||+||+             |||
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG  169 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLG  169 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred             EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence              233333211           124667778899999999999996   468999999999997             899


Q ss_pred             ccccccCCCccccccceecccccccccC
Q 047196          800 IGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       800 la~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +++.......  .....||++|+|||++
T Consensus       170 ~a~~~~~~~~--~~~~~gt~~Y~APE~l  195 (676)
T 3qa8_A          170 YAKELDQGEL--CTEFVGTLQYLAPELL  195 (676)
T ss_dssp             CCCBTTSCCC--CCCCCSCCTTCSSCSS
T ss_pred             cccccccccc--cccccCCcccCChHHh
Confidence            9987654332  2334689999999974

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.69  E-value=7.5e-17  Score=174.83  Aligned_cols=144  Identities=23%  Similarity=0.383  Sum_probs=92.5

Q ss_pred             hhccccc-ceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeec----CC--c
Q 047196          674 TEKFSKE-NLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN----ED--F  745 (827)
Q Consensus       674 ~~~~~~~-~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~----~~--~  745 (827)
                      .++|... ++||+|+||.||+|+.. +|+.||||++..... ..   ......++.++|||++++++++..    ..  +
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~---~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~  102 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK-AR---QEVDHHWQASGGPHIVCILDVYENMHHGKRCLL  102 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH-HH---HHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH-HH---HHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence            4567774 57999999999999875 689999999865321 11   222334677799999999999865    22  2


Q ss_pred             eeeeeecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccc
Q 047196          746 KALDCLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGR  802 (827)
Q Consensus       746 ~~l~~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~  802 (827)
                      .+++++..          ....+++.+...++.++++||+|||   +.+|+||||||+||+             |||+++
T Consensus       103 lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~  179 (336)
T 3fhr_A          103 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK  179 (336)
T ss_dssp             EEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccce
Confidence            22333322          1125788889999999999999996   568999999999998             899887


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ......   .....||++|+|||++
T Consensus       180 ~~~~~~---~~~~~~t~~y~aPE~~  201 (336)
T 3fhr_A          180 ETTQNA---LQTPCYTPYYVAPEVL  201 (336)
T ss_dssp             EC-----------------------
T ss_pred             eccccc---cccCCCCcCccChhhh
Confidence            654322   1234589999999974

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=6.6e-17  Score=160.17  Aligned_cols=113  Identities=23%  Similarity=0.272  Sum_probs=58.5

Q ss_pred             cccEEecCCCcccccCCc-cccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEc
Q 047196          453 RLNTLGLAGNKFSGSIPS-CLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINL  531 (827)
Q Consensus       453 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  531 (827)
                      +|++|++++|++++..+. .+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..++.++.|+.|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            344444444444433332 2444444455555555554444444445555555555555555444444555555555555


Q ss_pred             ccceeeecccccccCCCCCCEEECCCCcceeecC
Q 047196          532 SRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP  565 (827)
Q Consensus       532 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip  565 (827)
                      ++|+|++.+|..+..+++|+.|+|++|.+++..+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            5555555556566666666666666666655443

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.68  E-value=1.4e-17  Score=185.91  Aligned_cols=147  Identities=16%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             HhhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCC-CCce---------EEEe
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRH-RNHV---------KRIS  738 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H-~niv---------~~~~  738 (827)
                      .++.|...++||+|+||.||+|++ .+|+.||||++....   ....+.|.+|+.+++.++| +|..         ....
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            345677889999999999999995 579999999987332   2235789999999999988 2211         1000


Q ss_pred             e------------eecCC------ce-eeeeec--------------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCe
Q 047196          739 S------------CSNED------FK-ALDCLH--------------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPV  785 (827)
Q Consensus       739 ~------------~~~~~------~~-~l~~l~--------------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~i  785 (827)
                      .            .....      .. ++....              .....+.+..+..|+.|+++||+|||   +++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i  232 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL  232 (413)
T ss_dssp             EEECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             hcccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCc
Confidence            1            01100      00 000000              01122455677889999999999996   5689


Q ss_pred             EEccCCCccee----------eecccccccCCCccccccceecccccccccC
Q 047196          786 IHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       786 iHrDlK~~NIl----------DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +||||||+|||          |||+++.....    ....+| ++|||||++
T Consensus       233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~  279 (413)
T 3dzo_A          233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETT  279 (413)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHH
T ss_pred             ccCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhh
Confidence            99999999998          99998865432    233457 999999974

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.67  E-value=1.1e-17  Score=192.27  Aligned_cols=144  Identities=19%  Similarity=0.203  Sum_probs=95.1

Q ss_pred             cccceEecCCceEEEEEEecCCcEEEEEEEcccc--------hHHHHHHHHHHHHHHhcCCCCceEEEeeeecC--Ccee
Q 047196          678 SKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--------AMALKSFEAECEVMKNIRHRNHVKRISSCSNE--DFKA  747 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~--~~~~  747 (827)
                      ...++||+|+||.||+|+. .++.+|+|+.....        ....++|.+|++++++++|||||++..++...  .+..
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            4467899999999999954 46889999864321        11245689999999999999999444444343  3344


Q ss_pred             eeeeccCCCCCCHH--HHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------eecccccccCCCccc------
Q 047196          748 LDCLHSTNCSLNIF--DKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------DFGIGRLLTGDRSMI------  811 (827)
Q Consensus       748 l~~l~~~~~~l~~~--~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------DFGla~~~~~~~~~~------  811 (827)
                      ++++..  +.+...  .+..++.|+++||+|||   +++|+||||||+|||        |||+|+.........      
T Consensus       418 mE~~~g--gsL~~~l~~~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~~~kL~DFGla~~~~~~~~~~~~~~~~  492 (540)
T 3en9_A          418 MSYING--KLAKDVIEDNLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDKDLYIIDFGLGKISNLDEDKAVDLIVF  492 (540)
T ss_dssp             EECCCS--EEHHHHSTTCTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESSSEEECCCTTCEECCCHHHHHHHHHHH
T ss_pred             EECCCC--CCHHHHHHHHHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECCeEEEEECccCEECCCccccccchhhh
Confidence            444432  221111  14589999999999996   568999999999997        999999875432211      


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||+.|||||++
T Consensus       493 ~~~~~GT~~y~APEv~  508 (540)
T 3en9_A          493 KKAVLSTHHEKFDEIW  508 (540)
T ss_dssp             HHHHHHHCGGGHHHHH
T ss_pred             hhhhcCCCCcCCHHHH
Confidence            1234599999999974

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=5.2e-17  Score=175.55  Aligned_cols=134  Identities=15%  Similarity=0.106  Sum_probs=67.0

Q ss_pred             CCCCCCEEECCCCCCCccCChhhhh-ccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhcccccc
Q 047196          120 NLSSLTTLNLSHNKLSGDIPPSIFT-MHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLK  198 (827)
Q Consensus       120 ~L~~L~~L~Ls~N~l~g~~p~~~~~-l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~  198 (827)
                      .+.+++.|+++++ +....-..+.. +++|++|||++|++..... ..+.+..+..+.+..|    .||..         
T Consensus        23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~-~~~~~~~~~~~~~~~~----~I~~~---------   87 (329)
T 3sb4_A           23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSG-KAGTYPNGKFYIYMAN----FVPAY---------   87 (329)
T ss_dssp             HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEE-SSSSSGGGCCEEECTT----EECTT---------
T ss_pred             hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecC-cccccccccccccccc----ccCHH---------
Confidence            3678888888864 22222234444 6779999999998871100 0000000111111111    12211         


Q ss_pred             EEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeec
Q 047196          199 VLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGF  276 (827)
Q Consensus       199 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  276 (827)
                             .|.+..|..+.++++|+.++|.. .++..-+..|.++++|+.|++++|.+....+..|..+.++..+.+..
T Consensus        88 -------aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A           88 -------AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             -------TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             -------HhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence                   12222222222366666666666 56555555566666666666666666555555565555555544443

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.64  E-value=6.9e-16  Score=163.08  Aligned_cols=119  Identities=11%  Similarity=0.003  Sum_probs=96.1

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|...+.||+|+||.||+|+.. +|+.||||++....   ....++|.+|++++++++|||||++++++...+..++..
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            56888999999999999999875 58999999996542   344578999999999999999999999998876554432


Q ss_pred             eccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          751 LHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       751 l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                      .+..        .......+...|+.++++||+|||   +.+|+||||||+||+
T Consensus       111 e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIl  161 (286)
T 3uqc_A          111 EWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVR  161 (286)
T ss_dssp             ECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEE
T ss_pred             EecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEE
Confidence            2221        112345567889999999999996   568999999999998

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=5e-16  Score=150.22  Aligned_cols=133  Identities=20%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             CCCcEEECCCCCCC-CCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccC
Q 047196          428 QKLQGLYLPFNKLA-GSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFD  506 (827)
Q Consensus       428 ~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld  506 (827)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555554 45555555555555555555555543  4455556666666666666555555555566666666


Q ss_pred             CCCCCCCCCC-cccccccccCceEEcccceeeeccc---ccccCCCCCCEEECCCCccee
Q 047196          507 LSSNSLDGPL-SLDIGNLRVVIGINLSRNNFSGDIP---STIGDLKDLQNISLACNGLEG  562 (827)
Q Consensus       507 Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~ip---~~~~~l~~L~~L~Ls~N~l~g  562 (827)
                      +++|.+++.. +..+..++.|+.|++++|++++..+   ..+..+++|+.|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            6666665532 2456666666777777777665444   366677777777777766643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=4.3e-16  Score=168.30  Aligned_cols=101  Identities=22%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             CCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCcccccccccc-EEecCCCcccccCCccccCCCCCCcc
Q 047196          403 LSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLN-TLGLAGNKFSGSIPSCLGNLTSLRSP  481 (827)
Q Consensus       403 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L  481 (827)
                      +++|+.++|++|+++...+..|.++++|+.|+|++| +...-+..|.++++|+ .+++.+ +++..-+..|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            566666666666666555555666666666666665 4433344555666666 666655 4444444555566666666


Q ss_pred             ccCCCcccccCCcccccccccccc
Q 047196          482 DLGSNRLTSVLPSTFWNLKDILFF  505 (827)
Q Consensus       482 ~Ls~N~l~~~~p~~~~~l~~L~~L  505 (827)
                      ++++|+++...+..|.++++|+.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EeCCCccCccchhhhcCCcchhhh
Confidence            665566655555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.4e-15  Score=147.17  Aligned_cols=134  Identities=20%  Similarity=0.174  Sum_probs=75.9

Q ss_pred             CCCCCEEECCCCCCC-ccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccE
Q 047196          121 LSSLTTLNLSHNKLS-GDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKV  199 (827)
Q Consensus       121 L~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~  199 (827)
                      .++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|++++|.+++.+|..+.. +++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCE
Confidence            367788888888887 67777778888888888888887755  44555555555555555555443333222 224445


Q ss_pred             EEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccc---ccccCcCCCcEEEeec
Q 047196          200 LFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIP---HEIGYLPNLENLVLGF  276 (827)
Q Consensus       200 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~  276 (827)
                      |++++|.+++..                       .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++.
T Consensus       100 L~Ls~N~l~~~~-----------------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          100 LNLSGNKLKDIS-----------------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             EECBSSSCCSSG-----------------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             EeccCCccCcch-----------------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            554444444321                       11344455555555555555553332   2455555555555555


Q ss_pred             ccCc
Q 047196          277 NNLV  280 (827)
Q Consensus       277 N~l~  280 (827)
                      |.+.
T Consensus       157 n~~~  160 (168)
T 2ell_A          157 REDQ  160 (168)
T ss_dssp             TTSC
T ss_pred             CChh
Confidence            5544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=4.8e-16  Score=147.12  Aligned_cols=126  Identities=24%  Similarity=0.306  Sum_probs=96.7

Q ss_pred             cccEEEccCCcCc-cccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEec
Q 047196          381 SLENIYISNCNIG-GSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  459 (827)
                      +++.|++++|+++ +.+|..+..+++|+.|++++|++++.  ..++.+++|++|++++|++++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            6888888888887 77787778888888888888888765  66777888888888888888777777777788888888


Q ss_pred             CCCccccc-CCccccCCCCCCccccCCCcccccCC---ccccccccccccCCC
Q 047196          460 AGNKFSGS-IPSCLGNLTSLRSPDLGSNRLTSVLP---STFWNLKDILFFDLS  508 (827)
Q Consensus       460 s~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs  508 (827)
                      ++|++++. .|..+..+++|++|++++|.+++..+   ..+..+++|+.||++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888753 34667777788888888887777655   456677777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=3.7e-16  Score=147.91  Aligned_cols=126  Identities=15%  Similarity=0.152  Sum_probs=64.3

Q ss_pred             CCcEEECCCCCCC-CCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCC
Q 047196          429 KLQGLYLPFNKLA-GSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDL  507 (827)
Q Consensus       429 ~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  507 (827)
                      +|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3344444444443 33444444444444444444444432  33444455555555555555444444444555555555


Q ss_pred             CCCCCCCC-CcccccccccCceEEcccceeeeccc---ccccCCCCCCEEECC
Q 047196          508 SSNSLDGP-LSLDIGNLRVVIGINLSRNNFSGDIP---STIGDLKDLQNISLA  556 (827)
Q Consensus       508 s~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~ip---~~~~~l~~L~~L~Ls  556 (827)
                      ++|.+++. .+..++.++.|+.|++++|++++..+   ..++.+++|+.||++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555542 23455566666666666666665544   456666666666665

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.59  E-value=2.5e-15  Score=158.09  Aligned_cols=127  Identities=13%  Similarity=0.166  Sum_probs=89.6

Q ss_pred             HHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccch------------------HHHHHHHHHHHHHHhcCCCC
Q 047196          671 FRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA------------------MALKSFEAECEVMKNIRHRN  732 (827)
Q Consensus       671 ~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~------------------~~~~~~~~Ei~~l~~l~H~n  732 (827)
                      ......|...+.||+|+||.||+|+..+|+.||||+++....                  .....+.+|++++++++|.+
T Consensus        86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~  165 (282)
T 1zar_A           86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLA  165 (282)
T ss_dssp             HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCC
Confidence            334445667799999999999999987799999999864321                  23467899999999999544


Q ss_pred             ceEEEeeeec-CCceeeeeeccCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eeccc
Q 047196          733 HVKRISSCSN-EDFKALDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIG  801 (827)
Q Consensus       733 iv~~~~~~~~-~~~~~l~~l~~~~-~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla  801 (827)
                      +.   +++.. ..+..++++.... ..+...+...++.++++|++|||   +.+|+||||||+|||         |||+|
T Consensus       166 v~---~~~~~~~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~~~~vkl~DFG~a  239 (282)
T 1zar_A          166 VP---KVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEEGIWIIDFPQS  239 (282)
T ss_dssp             SC---CEEEEETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETTEEEECCCTTC
T ss_pred             cC---eEEeccceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEECCcEEEEECCCC
Confidence            44   43322 2333444443211 11222345679999999999996   678999999999998         77776


Q ss_pred             cc
Q 047196          802 RL  803 (827)
Q Consensus       802 ~~  803 (827)
                      +.
T Consensus       240 ~~  241 (282)
T 1zar_A          240 VE  241 (282)
T ss_dssp             EE
T ss_pred             eE
Confidence            53

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=4.5e-15  Score=146.95  Aligned_cols=108  Identities=27%  Similarity=0.362  Sum_probs=56.7

Q ss_pred             cccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcc
Q 047196          453 RLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLS  532 (827)
Q Consensus       453 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls  532 (827)
                      +|+.|++++|+++ .+|..+.++++|++|+|++|.+++..|..|.++++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4444455555444 344444455555555555555554444445555555555555555555444455555555555555


Q ss_pred             cceeeecccccccCCCCCCEEECCCCcce
Q 047196          533 RNNFSGDIPSTIGDLKDLQNISLACNGLE  561 (827)
Q Consensus       533 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  561 (827)
                      +|+|++..+..|..+++|+.|+|++|.+.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            55555444445555666666666655554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=5.2e-15  Score=144.40  Aligned_cols=132  Identities=27%  Similarity=0.268  Sum_probs=82.4

Q ss_pred             ccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCC
Q 047196          382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAG  461 (827)
Q Consensus       382 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  461 (827)
                      .+.+++++|+++. +|..+  .++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4566777777663 34322  25677777777777665555666677777777777777655555566666666666666


Q ss_pred             CcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCC
Q 047196          462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPL  516 (827)
Q Consensus       462 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  516 (827)
                      |++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            6666555555666666666666666666555544555566666666666555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=4.7e-15  Score=144.70  Aligned_cols=113  Identities=22%  Similarity=0.241  Sum_probs=56.6

Q ss_pred             cccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcc
Q 047196          453 RLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLS  532 (827)
Q Consensus       453 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls  532 (827)
                      +|+.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..++.++.|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            44444444444443333334444455555555555544444444445555555555555554444444555555555555


Q ss_pred             cceeeecccccccCCCCCCEEECCCCcceeecC
Q 047196          533 RNNFSGDIPSTIGDLKDLQNISLACNGLEGLIP  565 (827)
Q Consensus       533 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip  565 (827)
                      +|+|++..+..+..+++|+.|+|++|.+++..|
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            555554444444555555655555555554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=7.9e-15  Score=145.16  Aligned_cols=126  Identities=24%  Similarity=0.336  Sum_probs=64.0

Q ss_pred             cEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCC
Q 047196          383 ENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGN  462 (827)
Q Consensus       383 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  462 (827)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|+++ .+|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666666665 3443332  35555666655555 34455555555555555555555544445555555555555555


Q ss_pred             cccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCC
Q 047196          463 KFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSL  512 (827)
Q Consensus       463 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  512 (827)
                      ++++..|..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            55544444455555555555555555444333344444444444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=4.7e-17  Score=162.12  Aligned_cols=137  Identities=20%  Similarity=0.224  Sum_probs=69.5

Q ss_pred             cCCCCCceEeccCccccccccc------cccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccC
Q 047196          401 SNLSNLLLLDLEGNKLTGSIPV------TFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGN  474 (827)
Q Consensus       401 ~~l~~L~~L~Ls~N~l~g~~p~------~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  474 (827)
                      .....++.++++.|.++|.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3345556666666666665554      45555555555555555554 34 4555555555555555554 34444444


Q ss_pred             CCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCc-ccccccccCceEEcccceeeecccc
Q 047196          475 LTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLS-LDIGNLRVVIGINLSRNNFSGDIPS  542 (827)
Q Consensus       475 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~ip~  542 (827)
                      +++|++|++++|.+++. | .+..+++|+.|++++|++++..+ ..+..++.|+.|++++|++++.+|.
T Consensus        92 ~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           92 ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            45555555555555442 2 34444455555555555443211 2344455555555555555544443

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.52  E-value=3.7e-14  Score=150.84  Aligned_cols=124  Identities=23%  Similarity=0.427  Sum_probs=96.0

Q ss_pred             hccccc-ceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHH-HhcCCCCceEEEeeeec----CCcee
Q 047196          675 EKFSKE-NLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVM-KNIRHRNHVKRISSCSN----EDFKA  747 (827)
Q Consensus       675 ~~~~~~-~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l-~~l~H~niv~~~~~~~~----~~~~~  747 (827)
                      ++|... ++||+|+||.||+|+. .+|+.||||++...     ..+.+|++++ +..+||||+++++++..    ....+
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   91 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   91 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence            456665 7899999999999986 46899999998643     3467889888 66699999999998865    22222


Q ss_pred             --eeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccc
Q 047196          748 --LDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGR  802 (827)
Q Consensus       748 --l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~  802 (827)
                        +++....          ...+++.....++.+++.||+|||   +.+|+||||||+||+             |||+|+
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~  168 (299)
T 3m2w_A           92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK  168 (299)
T ss_dssp             EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEecccccc
Confidence              2332211          124778888999999999999996   568999999999998             899987


Q ss_pred             cccC
Q 047196          803 LLTG  806 (827)
Q Consensus       803 ~~~~  806 (827)
                      ....
T Consensus       169 ~~~~  172 (299)
T 3m2w_A          169 ETTG  172 (299)
T ss_dssp             ECTT
T ss_pred             cccc
Confidence            6543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=1.5e-16  Score=158.48  Aligned_cols=59  Identities=32%  Similarity=0.524  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCCccccCc------cccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCC
Q 047196           99 RVTALNISSLNLQGTIPP------QLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS  159 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~------~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~  159 (827)
                      +|+.++++.+.+.|.+|.      .+..+++|++|+|++|.+++ +| .+..+++|++|+|++|.++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence            344444555555554443      44445555555555555443 33 4444555555555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=1.9e-14  Score=140.16  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=84.3

Q ss_pred             ccCCCCCcEEECCCCCCCCCCCccccccc-cccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccc
Q 047196          424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLA-RLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDI  502 (827)
Q Consensus       424 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  502 (827)
                      +.++.+|+.|++++|+++. +|. +..+. +|+.|++++|++++.  ..+..+++|++|++++|.+++..|..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4455666666666666653 343 33333 666777777766653  456667777777777777776555555667777


Q ss_pred             cccCCCCCCCCCCCcc--cccccccCceEEcccceeeeccccc----ccCCCCCCEEECCCCcce
Q 047196          503 LFFDLSSNSLDGPLSL--DIGNLRVVIGINLSRNNFSGDIPST----IGDLKDLQNISLACNGLE  561 (827)
Q Consensus       503 ~~LdLs~N~l~g~~p~--~~~~l~~L~~L~Ls~N~l~g~ip~~----~~~l~~L~~L~Ls~N~l~  561 (827)
                      ++|+|++|.++. +|.  .++.++.|+.|++++|.++ .+|..    +..+++|+.||++.|.+.
T Consensus        91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777777743 444  5667777777777777776 44553    677777777777776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=3.7e-14  Score=138.14  Aligned_cols=127  Identities=19%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|++|++++|+++. +|......++|+.|++++|++++.  ..+..+++|++|+|++|++++..|..+..+++|++|+++
T Consensus        20 ~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            56666666666663 343333233666666666666653  455566666666666666654333334556666666666


Q ss_pred             CCcccccCCc--cccCCCCCCccccCCCcccccCCcc----ccccccccccCCCCCCC
Q 047196          461 GNKFSGSIPS--CLGNLTSLRSPDLGSNRLTSVLPST----FWNLKDILFFDLSSNSL  512 (827)
Q Consensus       461 ~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~LdLs~N~l  512 (827)
                      +|+++ .+|.  .+..+++|+.|++++|.++. +|..    +..+++|+.||++.|..
T Consensus        97 ~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           97 NNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            66663 3443  45555555555555555553 2332    44444455555444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=3.4e-12  Score=140.89  Aligned_cols=168  Identities=11%  Similarity=0.123  Sum_probs=84.2

Q ss_pred             CccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCcccc
Q 047196          317 NVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSI  396 (827)
Q Consensus       317 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~  396 (827)
                      +|+.+.+.. .++..-+..|.++.+|+.++++.|+++......                +.. .+|+.+.+.++ ++..-
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----------------F~~-~~L~~l~lp~~-l~~I~  218 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST----------------FVY-AGIEEVLLPVT-LKEIG  218 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT----------------TTT-CCCSEEECCTT-CCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh----------------Eee-cccCEEEeCCc-hheeh
Confidence            455555543 444444556666666666666666555322211                111 15666666533 54444


Q ss_pred             CccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCccc-----ccCCcc
Q 047196          397 PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFS-----GSIPSC  471 (827)
Q Consensus       397 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~  471 (827)
                      ...|.++++|+.+++..| ++..-...|.+ .+|+.+++ .|.++..-+..|.++++|+.+++.+|.+.     ..-+..
T Consensus       219 ~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          219 SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             TTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             hhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence            556666666666666653 34333444554 45666666 23344333445555555665555555443     222334


Q ss_pred             ccCCCCCCccccCCCcccccCCccccccccccccCC
Q 047196          472 LGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDL  507 (827)
Q Consensus       472 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  507 (827)
                      |.+|++|+.++|. |.++..-..+|.++++|+.++|
T Consensus       296 F~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          296 LEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             TTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred             hhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence            4555555555554 2344444444444444444444

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.42  E-value=1.5e-13  Score=142.70  Aligned_cols=125  Identities=18%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             ccccceEecCCceEEEEEEe-cCCcE--EEEEEEcccch------------------------HHHHHHHHHHHHHHhcC
Q 047196          677 FSKENLIGVGSFGSVYKGRL-HDGIE--VAIKVFHQNCA------------------------MALKSFEAECEVMKNIR  729 (827)
Q Consensus       677 ~~~~~~iG~G~fg~Vy~~~~-~~g~~--vAvK~l~~~~~------------------------~~~~~~~~Ei~~l~~l~  729 (827)
                      |+..+.||+|+||.||+|+. .+|+.  ||||+++....                        .....+.+|++++++++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            55678899999999999987 68888  99998754311                        11236889999999999


Q ss_pred             CCCc--eEEEeeeecCCceeeeeeccCC---CCC-------CHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          730 HRNH--VKRISSCSNEDFKALDCLHSTN---CSL-------NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       730 H~ni--v~~~~~~~~~~~~~l~~l~~~~---~~l-------~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                      |+++  ...+.  ....+.+++++....   ..+       .+.+...++.++++++.|||.  +.+|+||||||+||| 
T Consensus       129 ~~~i~~p~~~~--~~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlkp~NILl  204 (258)
T 1zth_A          129 EAGVSVPQPYT--YMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQ--EAELVHADLSEYNIMY  204 (258)
T ss_dssp             HTTCCCCCEEE--EETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCSTTSEEE
T ss_pred             hCCCCCCeEEE--cCCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCCHHHEEE
Confidence            8864  23332  234445555552100   011       122457899999999999962  678999999999987 


Q ss_pred             -------eeccccccc
Q 047196          797 -------DFGIGRLLT  805 (827)
Q Consensus       797 -------DFGla~~~~  805 (827)
                             |||+|....
T Consensus       205 ~~~~~liDFG~a~~~~  220 (258)
T 1zth_A          205 IDKVYFIDMGQAVTLR  220 (258)
T ss_dssp             SSSEEECCCTTCEETT
T ss_pred             cCcEEEEECcccccCC
Confidence                   999997654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=6.1e-12  Score=138.89  Aligned_cols=161  Identities=12%  Similarity=0.143  Sum_probs=88.7

Q ss_pred             CCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccc
Q 047196          316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGS  395 (827)
Q Consensus       316 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~  395 (827)
                      .+|+.+.+..+ ++..-...|.++++|+.+++..| ++.+-.               ..+..  .+|+.+++ .++++..
T Consensus       203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~---------------~aF~~--~~L~~i~l-p~~i~~I  262 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ---------------EAFRE--SGITTVKL-PNGVTNI  262 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT---------------TTTTT--CCCSEEEE-ETTCCEE
T ss_pred             cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc---------------ccccc--CCccEEEe-CCCccEE
Confidence            45555555532 44444556666667777666543 221111               11111  15666766 3445545


Q ss_pred             cCccccCCCCCceEeccCcccc-----ccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCc
Q 047196          396 IPQLISNLSNLLLLDLEGNKLT-----GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPS  470 (827)
Q Consensus       396 ~p~~~~~l~~L~~L~Ls~N~l~-----g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  470 (827)
                      -+..|.++++|+.+++.+|.+.     ...+..|.+|++|+.++|. +.+...-...|.++++|+.++|.+| ++..-+.
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence            5667777777777777776654     2344556666777777666 3354333455666666666666443 4433445


Q ss_pred             cccCCCCCCccccCCCcccccCCcccccc
Q 047196          471 CLGNLTSLRSPDLGSNRLTSVLPSTFWNL  499 (827)
Q Consensus       471 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  499 (827)
                      .|.++ +|+.+++++|.+....+..|.++
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             hCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            56666 66666666665555444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=4.5e-13  Score=129.60  Aligned_cols=107  Identities=22%  Similarity=0.264  Sum_probs=64.0

Q ss_pred             ccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEccc
Q 047196          454 LNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSR  533 (827)
Q Consensus       454 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~  533 (827)
                      .+.+++++|+++ .+|..+.  ++|++|+|++|.|++..|..|..+++|++|||++|+|++..+..+..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345555555555 3444432  4556666666666665555566666666666666666655555556666666666666


Q ss_pred             ceeeecccccccCCCCCCEEECCCCcceee
Q 047196          534 NNFSGDIPSTIGDLKDLQNISLACNGLEGL  563 (827)
Q Consensus       534 N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  563 (827)
                      |+|++..|..|..+++|+.|+|++|.++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            666655555666666666666666666544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=9.1e-13  Score=127.41  Aligned_cols=106  Identities=25%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             ccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCC
Q 047196          382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAG  461 (827)
Q Consensus       382 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  461 (827)
                      .+.+++++|+++. +|..+  .++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            5667777777764 44443  25666677777776666666666666666666666666655555556666666666666


Q ss_pred             CcccccCCccccCCCCCCccccCCCcccc
Q 047196          462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTS  490 (827)
Q Consensus       462 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  490 (827)
                      |++++..+..|..+++|++|+|++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            66665444456666666666666665554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1e-12  Score=127.46  Aligned_cols=105  Identities=20%  Similarity=0.249  Sum_probs=58.9

Q ss_pred             cEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccc
Q 047196          455 NTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRN  534 (827)
Q Consensus       455 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N  534 (827)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..+..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34555555553 3444332  45555555555555555555555555555555555555544444555666666666666


Q ss_pred             eeeecccccccCCCCCCEEECCCCccee
Q 047196          535 NFSGDIPSTIGDLKDLQNISLACNGLEG  562 (827)
Q Consensus       535 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  562 (827)
                      +|++..+..|..+++|+.|+|++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            6665444456666666666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1.8e-12  Score=125.72  Aligned_cols=106  Identities=27%  Similarity=0.295  Sum_probs=62.9

Q ss_pred             ccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCC
Q 047196          382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAG  461 (827)
Q Consensus       382 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  461 (827)
                      -+.+++++|+++ .+|..+.  ++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            355666666664 4454432  5666666666666666666666666666666666666654444455666666666666


Q ss_pred             CcccccCCccccCCCCCCccccCCCcccc
Q 047196          462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTS  490 (827)
Q Consensus       462 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  490 (827)
                      |++++..+..+..+++|++|+|++|.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            66654434445555566666666555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.33  E-value=4.9e-11  Score=131.92  Aligned_cols=238  Identities=12%  Similarity=0.068  Sum_probs=133.9

Q ss_pred             hhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCC
Q 047196          285 AAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTG  364 (827)
Q Consensus       285 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~  364 (827)
                      .+|.++++|+.+.+.++-  ..++...+..+++|+.+.+..| ++......|.++..|+.+.+..+...-          
T Consensus       156 ~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i----------  222 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL----------  222 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE----------
T ss_pred             hhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe----------
Confidence            345555555555554332  1233333334555555555444 333334455666666665554432210          


Q ss_pred             CCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCC
Q 047196          365 NPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSI  444 (827)
Q Consensus       365 n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~  444 (827)
                             ........ +|+.+.+..+ ++..-...|..+..|+.+.+..+... .....|..+..++.+....+.+.   
T Consensus       223 -------~~~~~~~~-~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---  289 (394)
T 4fs7_A          223 -------GDFALSKT-GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---  289 (394)
T ss_dssp             -------CTTTTTTC-CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---
T ss_pred             -------ehhhcccC-CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---
Confidence                   01111111 4566655432 23233455667777777777766443 44556777777777776654322   


Q ss_pred             CccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccc
Q 047196          445 PDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLR  524 (827)
Q Consensus       445 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~  524 (827)
                      ...|..+.+|+.+.+.++ ++..-...|.++++|+.+++.++ ++..-..+|.++.+|+.+++..| ++..-...|.++.
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            234666777777777654 44344556777788888887644 66555677777788877777665 5544455677777


Q ss_pred             cCceEEcccceeeecccccccCCCCCCEE
Q 047196          525 VVIGINLSRNNFSGDIPSTIGDLKDLQNI  553 (827)
Q Consensus       525 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L  553 (827)
                      +|+.+++..+ ++ .+...|.++++|+.+
T Consensus       367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          367 NLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            7777777654 22 234556666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.33  E-value=4.8e-11  Score=132.01  Aligned_cols=329  Identities=13%  Similarity=0.073  Sum_probs=159.9

Q ss_pred             CccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhcc
Q 047196          115 PPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYL  194 (827)
Q Consensus       115 ~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~  194 (827)
                      ..+|.++++|+.++|.. .++.+-..+|.++++|+.++|..+ ++..-...|.+..+|+.+.+..+ +. .+....+...
T Consensus        64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~  139 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC  139 (394)
T ss_dssp             TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred             HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence            45788888899999874 466555667888899999988754 54333455666666666554432 11 2222223222


Q ss_pred             ccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEe
Q 047196          195 HYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL  274 (827)
Q Consensus       195 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  274 (827)
                      ..++......  .......+|.++++|+.+.+..+. ...-...|.++++|+.+++..| ++..-...|.+++.|+.+.+
T Consensus       140 ~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          140 DFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             CCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             cccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence            1122111111  111223445566666666665432 2233344555566665555544 33233344555555555554


Q ss_pred             ecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCccee
Q 047196          275 GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSG  354 (827)
Q Consensus       275 s~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  354 (827)
                      ..+...  +......                         ..+|+.+.+..+ ++..-...+.++..|+.+.+..+... 
T Consensus       216 ~~~~~~--i~~~~~~-------------------------~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-  266 (394)
T 4fs7_A          216 PNSLYY--LGDFALS-------------------------KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-  266 (394)
T ss_dssp             CTTCCE--ECTTTTT-------------------------TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-
T ss_pred             CCCceE--eehhhcc-------------------------cCCCceEEECCC-ceecccccccccccceeEEcCCCcce-
Confidence            443221  1122222                         234444444322 22222344555666666665544321 


Q ss_pred             ecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEE
Q 047196          355 IIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLY  434 (827)
Q Consensus       355 ~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  434 (827)
                       +..              ..+.... .++.+....+.+   ....|..+.+|+.+.+..+ ++..-...|.++.+|+.++
T Consensus       267 -i~~--------------~~F~~~~-~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~  326 (394)
T 4fs7_A          267 -IGG--------------SLFYNCS-GLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID  326 (394)
T ss_dssp             -ECS--------------CTTTTCT-TCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred             -eec--------------ccccccc-ccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence             000              0111111 344444433322   1234555666666666543 4433345566666666666


Q ss_pred             CCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccc
Q 047196          435 LPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILF  504 (827)
Q Consensus       435 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  504 (827)
                      +..+ ++..-...|.++.+|+.+++..| ++..-...|.+|++|+.+++..+ +. .+...|.++++|+.
T Consensus       327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            6533 44233445566666666666554 44333445666666666666543 21 12334555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=2.1e-13  Score=149.16  Aligned_cols=161  Identities=19%  Similarity=0.181  Sum_probs=68.6

Q ss_pred             CCCCEEECCCCCCCccCChhhhhc-----cccceEEecCCCCCCccccc-cCCCCCCcEEEcCCCCCCCCcchhHhhc--
Q 047196          122 SSLTTLNLSHNKLSGDIPPSIFTM-----HKLKFLDFSDNQLSGSLSSV-TFNLSSVLDIRLDSDKLSGELPVNICNY--  193 (827)
Q Consensus       122 ~~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~LdLs~N~l~g~~p~~-~~~l~~L~~L~L~~n~l~g~ip~~~~~~--  193 (827)
                      +.|++|+|++|.++......+..+     ++|++|||++|.++...... ...+.+|++|+|++|.++..-...+...  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            345555555555554333333332     45555555555554221111 1122233334444443332212222211  


Q ss_pred             --cccccEEEeecccccc----cCCccCCCCCCCcEEEccCCCCccc----CCCcCcCCccccEEEccccccccc----c
Q 047196          194 --LHYLKVLFLAKNMFHG----QIPLALSKCKRLQLLNLGFKKLSGA----IPKEISNLTILRKISLRNNKLRGE----I  259 (827)
Q Consensus       194 --~~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~  259 (827)
                        ..+|++|+|++|.++.    .++..+..+++|++|+|++|.++..    ++..+...++|++|+|++|.|+..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence              1245555555555442    1222334445555555555555421    233344444555555555555432    2


Q ss_pred             cccccCcCCCcEEEeecccCccc
Q 047196          260 PHEIGYLPNLENLVLGFNNLVGV  282 (827)
Q Consensus       260 p~~~~~l~~L~~L~Ls~N~l~~~  282 (827)
                      +..+...++|++|+|++|.|+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHH
Confidence            22333345555555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=9.6e-13  Score=143.92  Aligned_cols=137  Identities=15%  Similarity=0.153  Sum_probs=88.7

Q ss_pred             ccccceEEecCCCCCCcccccc----C-CCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccC----
Q 047196          145 MHKLKFLDFSDNQLSGSLSSVT----F-NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL----  215 (827)
Q Consensus       145 l~~L~~LdLs~N~l~g~~p~~~----~-~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l----  215 (827)
                      ++.|++|+|++|.++......+    . ...+|++|+|++|.++..-...+...+.+|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            5789999999999986433332    2 236888888888888754445555555678888888887765433333    


Q ss_pred             -CCCCCCcEEEccCCCCcc----cCCCcCcCCccccEEEccccccccc----ccccccCcCCCcEEEeecccCcc
Q 047196          216 -SKCKRLQLLNLGFKKLSG----AIPKEISNLTILRKISLRNNKLRGE----IPHEIGYLPNLENLVLGFNNLVG  281 (827)
Q Consensus       216 -~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~  281 (827)
                       ...++|+.|+|++|.++.    .++..+..+++|++|+|++|.|+..    ++..+...++|++|+|++|.++.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence             245667777777777753    2333445566677777777776532    24445556667777777776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=2.3e-11  Score=132.09  Aligned_cols=105  Identities=20%  Similarity=0.196  Sum_probs=77.5

Q ss_pred             cEEEccCC-cCccccCccccCCCCCceEeccC-ccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          383 ENIYISNC-NIGGSIPQLISNLSNLLLLDLEG-NKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       383 ~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      ..++.+++ ++++ +|. +..+++|+.|+|++ |+|++..|..|.++++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 7774 666 77788888888885 88887777778888888888888888887777777778888888888


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTS  490 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  490 (827)
                      +|+|++..+..+..++ |+.|+|++|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            8888755455555544 7777777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=3.5e-11  Score=130.70  Aligned_cols=104  Identities=21%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             eEeccCc-cccccccccccCCCCCcEEECCC-CCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCC
Q 047196          408 LLDLEGN-KLTGSIPVTFGRLQKLQGLYLPF-NKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGS  485 (827)
Q Consensus       408 ~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  485 (827)
                      .++.+++ ++++ +|. +..+++|+.|+|++ |+|++..|..|.++++|+.|+|++|+|++..|..|.++++|++|||++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455555 5553 444 55556666666653 666555555556666666666666666655555556666666666666


Q ss_pred             CcccccCCccccccccccccCCCCCCCCC
Q 047196          486 NRLTSVLPSTFWNLKDILFFDLSSNSLDG  514 (827)
Q Consensus       486 N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  514 (827)
                      |+|++..+..|..++ |+.|+|++|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            666554444444444 5666666665553

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.11  E-value=1e-10  Score=126.29  Aligned_cols=118  Identities=14%  Similarity=0.129  Sum_probs=78.2

Q ss_pred             cccccceEecCCceEEEEEEecCCcEEEEEEEcccch-----------------H-----HHHHHHHHHHHHHhcCCCCc
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA-----------------M-----ALKSFEAECEVMKNIRHRNH  733 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-----------------~-----~~~~~~~Ei~~l~~l~H~ni  733 (827)
                      -|+..+.||+|+||.||+|...+|+.||||+++....                 .     ......+|...|.++.+..+
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3788899999999999999988999999998753210                 0     01123567888888865543


Q ss_pred             eEEEeeeecCCceeeeeeccCC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee
Q 047196          734 VKRISSCSNEDFKALDCLHSTN--CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF  796 (827)
Q Consensus       734 v~~~~~~~~~~~~~l~~l~~~~--~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl  796 (827)
                      .....+.......+|+++....  ......+...++.+++.++.|+|   +.+||||||||.|||
T Consensus       176 ~vp~p~~~~~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NIL  237 (397)
T 4gyi_A          176 PVPEPIAQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLA---KHGLIHGDFNEFNIL  237 (397)
T ss_dssp             SCCCEEEEETTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEE
T ss_pred             CCCeeeeccCceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEE
Confidence            2211122223344555543211  01122234568889999999996   467999999999999

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.10  E-value=5.1e-09  Score=115.60  Aligned_cols=309  Identities=12%  Similarity=0.104  Sum_probs=135.4

Q ss_pred             CCccCCCCCCCcEEEccCCC---CcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCchhh
Q 047196          211 IPLALSKCKRLQLLNLGFKK---LSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAI  287 (827)
Q Consensus       211 ~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  287 (827)
                      -..+|.++++|+.+.+..|.   ++..-...|.++.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.......|
T Consensus        79 g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F  156 (394)
T 4gt6_A           79 GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMF  156 (394)
T ss_dssp             CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred             hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccce
Confidence            34455566666666655442   33233344555555655554433 33233345555666666666532 333334455


Q ss_pred             hcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCC
Q 047196          288 FNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPL  367 (827)
Q Consensus       288 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l  367 (827)
                      .++.+|+.+.+.++-  ..+....+ ....|+.+.+..+- ...-...+.++.++.......+.....- .         
T Consensus       157 ~~c~~L~~i~~~~~~--~~I~~~aF-~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~-~---------  222 (394)
T 4gt6_A          157 SYCYSLHTVTLPDSV--TAIEERAF-TGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAID-N---------  222 (394)
T ss_dssp             TTCTTCCEEECCTTC--CEECTTTT-TTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSS-S---------
T ss_pred             eccccccccccccee--eEeccccc-cccceeEEEECCcc-cccccchhhhccccceeccccccccccc-c---------
Confidence            555666665554431  12222222 22345555554332 2223345556666665554433321100 0         


Q ss_pred             cccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCcc
Q 047196          368 DGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQ  447 (827)
Q Consensus       368 ~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~  447 (827)
                            .+...           +.........+.....+..+.+. +.++..-...|.++..|+.+.+..+... .-...
T Consensus       223 ------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a  283 (394)
T 4gt6_A          223 ------VLYEK-----------SANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGA  283 (394)
T ss_dssp             ------CEEEE-----------CTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT
T ss_pred             ------eeecc-----------cccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcc
Confidence                  00000           00000000000011122222221 1122222334555555666555443321 22334


Q ss_pred             ccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCc
Q 047196          448 LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVI  527 (827)
Q Consensus       448 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~  527 (827)
                      |.+++.|+.+.+. +.++..-...|.+|.+|+.++|..+ ++..-..+|.++.+|+.+.+..+ ++..-...|.++++|+
T Consensus       284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            5555666666654 2333333445666666666666543 44444556666666666666433 4433345566666677


Q ss_pred             eEEcccceeeecccccccCCCCCCEEECCCCcc
Q 047196          528 GINLSRNNFSGDIPSTIGDLKDLQNISLACNGL  560 (827)
Q Consensus       528 ~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l  560 (827)
                      .+++.+|....   ..+..+.+|+.+.+..|.+
T Consensus       361 ~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          361 NIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            77776665432   3455666677666655543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.99  E-value=8.2e-08  Score=105.87  Aligned_cols=318  Identities=12%  Similarity=0.110  Sum_probs=147.2

Q ss_pred             CccccCCC-CCCEEECCCCCCCccCChhhhhccccceEEecCCC---CCCccccccCCCCCCcEEEcCCCCCCCCcchhH
Q 047196          115 PPQLGNLS-SLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQ---LSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNI  190 (827)
Q Consensus       115 ~~~l~~L~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~---l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~  190 (827)
                      ..+|.+.+ .|+.+.+..+ ++.+-..+|.++++|+.+.++.|.   ++..-...|.+..+|+.+.+..+          
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~----------  124 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS----------  124 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT----------
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc----------
Confidence            34677764 5888888754 665666788889999999988774   33222334555555554433322          


Q ss_pred             hhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCc
Q 047196          191 CNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLE  270 (827)
Q Consensus       191 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  270 (827)
                                      ++......|.++.+|+.+.+..+ +...-...|.++..|+.+.+..+ ++..-...|. ..+|+
T Consensus       125 ----------------~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~  185 (394)
T 4gt6_A          125 ----------------VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALT  185 (394)
T ss_dssp             ----------------CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCS
T ss_pred             ----------------cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-cccee
Confidence                            11122334455555555555432 22223334555555555555443 2212222332 24555


Q ss_pred             EEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhh-------------cCCCCccEEeCcCCccccccCcccc
Q 047196          271 NLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGID-------------LSLPNVERLNLGLNRFSGTIPSFIT  337 (827)
Q Consensus       271 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------~~l~~L~~L~L~~N~l~~~~p~~~~  337 (827)
                      .+.+..+- +......+.++.++.......+..... ...+.             .....+..+.+. +.++..-...|.
T Consensus       186 ~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~  262 (394)
T 4gt6_A          186 QIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAI-DNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFD  262 (394)
T ss_dssp             EEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBS-SSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTT
T ss_pred             EEEECCcc-cccccchhhhccccceecccccccccc-cceeecccccccccccccccccccceEEcC-CcceEcccceee
Confidence            55554432 223334455555555554433322100 00000             000111111111 111111222334


Q ss_pred             CCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcccc
Q 047196          338 NASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT  417 (827)
Q Consensus       338 ~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  417 (827)
                      ++.+|                                        +.+.+.++.. ..-...|.++++|+.+.+. +.++
T Consensus       263 ~c~~L----------------------------------------~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~  300 (394)
T 4gt6_A          263 SCAYL----------------------------------------ASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRIT  300 (394)
T ss_dssp             TCSSC----------------------------------------CEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCC
T ss_pred             ecccc----------------------------------------cEEecccccc-eecCcccccccccccccCC-Cccc
Confidence            44444                                        4444433222 1223445556666666664 3344


Q ss_pred             ccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCcccc
Q 047196          418 GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFW  497 (827)
Q Consensus       418 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  497 (827)
                      ......|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-...|.+|++|+.+++.+|....   ..+.
T Consensus       301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~  375 (394)
T 4gt6_A          301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAIS  375 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCB
T ss_pred             ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhh
Confidence            344455666666666666543 43233445666666666666543 443334456667777777776664432   2455


Q ss_pred             ccccccccCCCCCCC
Q 047196          498 NLKDILFFDLSSNSL  512 (827)
Q Consensus       498 ~l~~L~~LdLs~N~l  512 (827)
                      .+.+|+.+.+..|.+
T Consensus       376 ~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          376 TDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCCCC----------
T ss_pred             ccCCCCEEEeCCCCE
Confidence            556666666655544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=1.1e-09  Score=118.54  Aligned_cols=181  Identities=14%  Similarity=0.167  Sum_probs=97.7

Q ss_pred             CCcEEEEEcCCCCCcc-c-------cCccccCCCCCCEEECCCCCCC---------ccCChhhhhccccceEEecCCCCC
Q 047196           97 SHRVTALNISSLNLQG-T-------IPPQLGNLSSLTTLNLSHNKLS---------GDIPPSIFTMHKLKFLDFSDNQLS  159 (827)
Q Consensus        97 ~~~v~~L~L~~~~l~g-~-------~~~~l~~L~~L~~L~Ls~N~l~---------g~~p~~~~~l~~L~~LdLs~N~l~  159 (827)
                      ..+|+.|.+......| .       +..+...+++|+.|.+..+...         +.++..+..+++|+.|+|++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3578888888766553 2       2334667889999999776431         235566778899999999887311


Q ss_pred             CccccccCCCCCCcEEEcCCCCCCCCcchhHhh-ccccccEEEeec--ccccccC-----CccC--CCCCCCcEEEccCC
Q 047196          160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICN-YLHYLKVLFLAK--NMFHGQI-----PLAL--SKCKRLQLLNLGFK  229 (827)
Q Consensus       160 g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~-~~~~L~~L~Ls~--N~l~~~~-----p~~l--~~l~~L~~L~L~~n  229 (827)
                       .++. + .+++|+.|+|..+.+....-..+.. .+++|+.|+|+.  |...+..     ...+  ..+++|++|+|.+|
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence             2232 2 3677888888777654332223331 355777777753  2221110     0111  23455555555555


Q ss_pred             CCcccCCCcC---cCCccccEEEccccccccc----ccccccCcCCCcEEEeecccCc
Q 047196          230 KLSGAIPKEI---SNLTILRKISLRNNKLRGE----IPHEIGYLPNLENLVLGFNNLV  280 (827)
Q Consensus       230 ~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  280 (827)
                      .++...+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            5543221111   1345555555555555432    2222233455555555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.85  E-value=3.4e-11  Score=123.83  Aligned_cols=24  Identities=13%  Similarity=-0.013  Sum_probs=17.9

Q ss_pred             CCCcccceecCCCCCcEEEEEcCC
Q 047196           84 SVCNWIGITCNVNSHRVTALNISS  107 (827)
Q Consensus        84 ~~C~W~gv~C~~~~~~v~~L~L~~  107 (827)
                      ..|+|.|+.|+....+|+.+...+
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~   99 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSS   99 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred             HHHhcCcEEECCCCCEEEEEEecC
Confidence            468999999997666776665544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=1.1e-08  Score=110.72  Aligned_cols=211  Identities=15%  Similarity=0.103  Sum_probs=112.3

Q ss_pred             CCCCCEEECCCCCCCc-cC-------ChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhh
Q 047196          121 LSSLTTLNLSHNKLSG-DI-------PPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICN  192 (827)
Q Consensus       121 L~~L~~L~Ls~N~l~g-~~-------p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~  192 (827)
                      ++.++.|.+....+.| ..       ..+...+++|+.|.+..+.....--.+..               .+.++ .+..
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~---------------~~~L~-~ll~  169 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE---------------QVDLS-PVLD  169 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCB---------------CCBCH-HHHH
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhccccccc---------------ccCHH-HHHh
Confidence            3467788887666543 21       33456788999999977644210000000               01122 2223


Q ss_pred             ccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCc--CCccccEEEccc--cccccc-----ccccc
Q 047196          193 YLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEIS--NLTILRKISLRN--NKLRGE-----IPHEI  263 (827)
Q Consensus       193 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~-----~p~~~  263 (827)
                      ..++|+.|+|++|.-. .++. + .+++|+.|++..+.++......+.  .+++|++|+|+.  |...+.     +...+
T Consensus       170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            3446666666665211 1222 2 256777777766665433222232  566777777653  221111     11112


Q ss_pred             --cCcCCCcEEEeecccCcccCchhhh---cCCCccEEEecCCccccccChhhh---cCCCCccEEeCcCCccccccCcc
Q 047196          264 --GYLPNLENLVLGFNNLVGVVPAAIF---NMSTVKKIYLLDNSLLGSFSLGID---LSLPNVERLNLGLNRFSGTIPSF  335 (827)
Q Consensus       264 --~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~~~p~~  335 (827)
                        ..+++|++|+|.+|.++...+..+.   .+++|++|+++.|.+.+.-...+.   ..+++|+.|+|+.|.++...-..
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence              2467777777777777654444443   366778888877776653211111   14678888888888876543333


Q ss_pred             ccCCCCCcEEEcCCCc
Q 047196          336 ITNASKLVYLDMGTNS  351 (827)
Q Consensus       336 ~~~l~~L~~L~Ls~N~  351 (827)
                      +...- ...++++.++
T Consensus       327 l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC-CSEEECCSBC
T ss_pred             HHHHc-CCEEEecCCc
Confidence            33211 4567888776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.61  E-value=2.6e-06  Score=93.17  Aligned_cols=80  Identities=4%  Similarity=-0.020  Sum_probs=43.5

Q ss_pred             ccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEE
Q 047196          193 YLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENL  272 (827)
Q Consensus       193 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  272 (827)
                      ...+|+.+.+..+ ++..-..+|.+|.+|+.+++..+ ++..-...|.++ +|+.+.+..+ ++..-...|.. .+|+.+
T Consensus        44 ~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i  118 (379)
T 4h09_A           44 DRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF  118 (379)
T ss_dssp             GGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred             cccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence            3446777777543 44444566777777777777543 544444556655 4555555433 33222233333 356666


Q ss_pred             Eeecc
Q 047196          273 VLGFN  277 (827)
Q Consensus       273 ~Ls~N  277 (827)
                      ++..+
T Consensus       119 ~lp~~  123 (379)
T 4h09_A          119 EFPGA  123 (379)
T ss_dssp             ECCTT
T ss_pred             cCCCc
Confidence            66543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.59  E-value=9.5e-06  Score=88.69  Aligned_cols=107  Identities=13%  Similarity=0.065  Sum_probs=48.7

Q ss_pred             ccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCC
Q 047196          398 QLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTS  477 (827)
Q Consensus       398 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  477 (827)
                      ..|.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +...-...|.++++|+.+.+.++.++..-...|.+|.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            34444555555555433 33233334455555555555332 22222234444555555555555444333444555555


Q ss_pred             CCccccCCCcccccCCccccccccccccCC
Q 047196          478 LRSPDLGSNRLTSVLPSTFWNLKDILFFDL  507 (827)
Q Consensus       478 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  507 (827)
                      |+.++|..+ ++.+-..+|.++++|+.+.+
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            555555432 33333444555555554444

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.34  E-value=1.3e-06  Score=90.16  Aligned_cols=107  Identities=14%  Similarity=0.049  Sum_probs=72.4

Q ss_pred             HHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCCcee--e
Q 047196          672 RATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNEDFKA--L  748 (827)
Q Consensus       672 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~~~~--l  748 (827)
                      .....|......+.|+.+.||+.... |..+++|+...........+.+|+++++.++ |..+.++++++......+  +
T Consensus        11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~   89 (263)
T 3tm0_A           11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM   89 (263)
T ss_dssp             HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEE
Confidence            34456777777888889999999754 6789999986432222346889999999995 556667888777655433  3


Q ss_pred             eeeccCCC---CCCHHHHHHHHHHHHHHHHHHHh
Q 047196          749 DCLHSTNC---SLNIFDKLNIMIDVASALEYLHF  779 (827)
Q Consensus       749 ~~l~~~~~---~l~~~~~~~i~~~ia~~L~~Lh~  779 (827)
                      +++.....   ..+..+...++.+++++++.||.
T Consensus        90 e~i~G~~l~~~~~~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           90 SEADGVLCSEEYEDEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             ECCSSEEHHHHCCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCeehhhccCCcccHHHHHHHHHHHHHHHhC
Confidence            44332210   00112345788999999999997

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.32  E-value=6.2e-08  Score=94.56  Aligned_cols=46  Identities=13%  Similarity=0.103  Sum_probs=29.3

Q ss_pred             cCccccCCCCCCEEECCCC-CCCcc----CChhhhhccccceEEecCCCCC
Q 047196          114 IPPQLGNLSSLTTLNLSHN-KLSGD----IPPSIFTMHKLKFLDFSDNQLS  159 (827)
Q Consensus       114 ~~~~l~~L~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~LdLs~N~l~  159 (827)
                      +...+...+.|++|+|++| .+...    +...+...++|++|||++|.+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            3445666777778888877 76532    3334445567777777777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=8.8e-08  Score=98.37  Aligned_cols=67  Identities=22%  Similarity=0.309  Sum_probs=38.9

Q ss_pred             cCCCCCcEEECCCCCCCC--CCCccccccccccEEecCCCcccccCCccccCCC--CCCccccCCCcccccCC
Q 047196          425 GRLQKLQGLYLPFNKLAG--SIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLT--SLRSPDLGSNRLTSVLP  493 (827)
Q Consensus       425 ~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p  493 (827)
                      .++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            456666666666666665  3445555666666666666666643  2222222  56666666666665444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=1.7e-07  Score=91.48  Aligned_cols=44  Identities=9%  Similarity=0.075  Sum_probs=23.2

Q ss_pred             ccccCCCCCcEEECCCC-CCCCC----CCccccccccccEEecCCCccc
Q 047196          422 VTFGRLQKLQGLYLPFN-KLAGS----IPDQLCHLARLNTLGLAGNKFS  465 (827)
Q Consensus       422 ~~~~~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~  465 (827)
                      ..+...+.|+.|+|++| .+...    +...+...++|++|+|++|++.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            34555667777777776 66421    1222333445555555555554

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.17  E-value=1.9e-06  Score=88.72  Aligned_cols=93  Identities=12%  Similarity=0.052  Sum_probs=61.0

Q ss_pred             ecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCc-e-EEEeeeecCC--ceeeeeeccCCCCCC
Q 047196          684 GVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH-V-KRISSCSNED--FKALDCLHSTNCSLN  759 (827)
Q Consensus       684 G~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~ni-v-~~~~~~~~~~--~~~l~~l~~~~~~l~  759 (827)
                      +.|..+.||+....+|..++||+....   ....+.+|+++++.+++.++ | +++++...++  +.+++++........
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~~~  105 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSS  105 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETTTS
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccCcC
Confidence            456679999998777888999997543   22457889999999976554 4 4677665544  334444433221111


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 047196          760 IFDKLNIMIDVASALEYLHF  779 (827)
Q Consensus       760 ~~~~~~i~~~ia~~L~~Lh~  779 (827)
                      ..+...++.++++.++.||.
T Consensus       106 ~~~~~~~~~~l~~~l~~lh~  125 (264)
T 1nd4_A          106 HLAPAEKVSIMADAMRRLHT  125 (264)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCHhHHHHHHHHHHHHHhC
Confidence            11234678888899999875

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.80  E-value=5.5e-05  Score=81.91  Aligned_cols=99  Identities=12%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEc--ccc-hHHHHHHHHHHHHHHhcCC--CCceEEEeeeecC-----Cceeee
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFH--QNC-AMALKSFEAECEVMKNIRH--RNHVKRISSCSNE-----DFKALD  749 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~--~~~-~~~~~~~~~Ei~~l~~l~H--~niv~~~~~~~~~-----~~~~l~  749 (827)
                      .+.++.|.++.||+.+..+ ..+++|+..  ... ......+.+|+++++.+++  ..+.+.+.++.+.     .+.+++
T Consensus        43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            4568899999999988764 578888765  322 1223468899999999984  4567788887665     344555


Q ss_pred             eeccCC------CCCCHHHHHHHHHHHHHHHHHHHh
Q 047196          750 CLHSTN------CSLNIFDKLNIMIDVASALEYLHF  779 (827)
Q Consensus       750 ~l~~~~------~~l~~~~~~~i~~~ia~~L~~Lh~  779 (827)
                      ++....      ..++..++..++.++++.|+.||.
T Consensus       122 ~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~  157 (359)
T 3dxp_A          122 FVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHT  157 (359)
T ss_dssp             CCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhC
Confidence            554322      124566778899999999999996

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.16  E-value=0.00015  Score=69.00  Aligned_cols=34  Identities=3%  Similarity=-0.133  Sum_probs=17.2

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCC
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFK  229 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  229 (827)
                      +|+.||++++.++..--..+.++++|+.|+|+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4566666655554332333445555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.15  E-value=0.0003  Score=66.88  Aligned_cols=84  Identities=12%  Similarity=0.118  Sum_probs=49.6

Q ss_pred             CCCcEEEccCCCCcccCCCcCcCCccccEEEccccc-ccccccccccCc----CCCcEEEeeccc-CcccCchhhhcCCC
Q 047196          219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNK-LRGEIPHEIGYL----PNLENLVLGFNN-LVGVVPAAIFNMST  292 (827)
Q Consensus       219 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~  292 (827)
                      .+|+.||++++.++..--..+.++++|++|+|++|. ++..-=..+..+    ++|++|+|++|. +|..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467777777777664333445667777777777774 553322334443    357777777763 55433334555666


Q ss_pred             ccEEEecCCc
Q 047196          293 VKKIYLLDNS  302 (827)
Q Consensus       293 L~~L~l~~n~  302 (827)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666654

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=96.39  E-value=0.017  Score=60.38  Aligned_cols=94  Identities=15%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCC-CC--ceEEEeeeecCC-----ceeeeee
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRH-RN--HVKRISSCSNED-----FKALDCL  751 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H-~n--iv~~~~~~~~~~-----~~~l~~l  751 (827)
                      .+.++.|....||+..    ..+++|+-...  .....+.+|+++++.+.+ ..  +.+.+..+...+     +.+++++
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i   98 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI   98 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence            3568999999999853    46888885432  345678999999999843 22  223444433322     2233334


Q ss_pred             ccCCC------CCCHHHHHHHHHHHHHHHHHHHh
Q 047196          752 HSTNC------SLNIFDKLNIMIDVASALEYLHF  779 (827)
Q Consensus       752 ~~~~~------~l~~~~~~~i~~~ia~~L~~Lh~  779 (827)
                      .....      .++..++..++.++++.++.||.
T Consensus        99 ~G~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A           99 KGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             CCEECCHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeECCccccccCCHHHHHHHHHHHHHHHHHHHc
Confidence            32211      23344566788888888888885

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.39  E-value=0.011  Score=61.35  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=42.6

Q ss_pred             cccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC
Q 047196          676 KFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR  729 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~  729 (827)
                      .....+.+|.|..+.||+.+..+|+.|.||+-..........|.+|++.|+.+.
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~   69 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLG   69 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHH
Confidence            345557789999999999999999999999865443333346889999999885

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.34  E-value=0.00059  Score=66.10  Aligned_cols=41  Identities=10%  Similarity=0.255  Sum_probs=19.7

Q ss_pred             cCCCCCCEEECCCC-CCCc----cCChhhhhccccceEEecCCCCC
Q 047196          119 GNLSSLTTLNLSHN-KLSG----DIPPSIFTMHKLKFLDFSDNQLS  159 (827)
Q Consensus       119 ~~L~~L~~L~Ls~N-~l~g----~~p~~~~~l~~L~~LdLs~N~l~  159 (827)
                      .+-+.|++|+|++| +|..    .+-..+..-+.|+.|+|++|++.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            34455556666553 4431    12233334455555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.16  E-value=0.0089  Score=53.87  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=43.1

Q ss_pred             EEEcCCCCCc-cccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCC
Q 047196          102 ALNISSLNLQ-GTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS  159 (827)
Q Consensus       102 ~L~L~~~~l~-g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~  159 (827)
                      .++.++++++ ..+|..+.  .+|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777776 35554432  36899999999999766677888999999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.16  E-value=0.0029  Score=61.22  Aligned_cols=83  Identities=18%  Similarity=0.287  Sum_probs=59.0

Q ss_pred             CcEEEEEcCCC-CCcc----ccCccccCCCCCCEEECCCCCCCc----cCChhhhhccccceEEecCCCCCCc----ccc
Q 047196           98 HRVTALNISSL-NLQG----TIPPQLGNLSSLTTLNLSHNKLSG----DIPPSIFTMHKLKFLDFSDNQLSGS----LSS  164 (827)
Q Consensus        98 ~~v~~L~L~~~-~l~g----~~~~~l~~L~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~LdLs~N~l~g~----~p~  164 (827)
                      ..++.|+|+++ +|..    .+..++..-+.|+.|+|++|.|..    .+...+..-+.|++|+|++|.|...    +-.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            46899999985 7753    244567778899999999999973    3445566778999999999999743    223


Q ss_pred             ccCCCCCCcEEEcCCC
Q 047196          165 VTFNLSSVLDIRLDSD  180 (827)
Q Consensus       165 ~~~~l~~L~~L~L~~n  180 (827)
                      .+..-+.|++|+|+.|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            3444445666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.00  E-value=0.0096  Score=53.63  Aligned_cols=56  Identities=25%  Similarity=0.367  Sum_probs=34.1

Q ss_pred             EEEccCCCCc-ccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCc
Q 047196          223 LLNLGFKKLS-GAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLV  280 (827)
Q Consensus       223 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  280 (827)
                      .++.+++.++ ..+|..+.  .+|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4556666654 23444332  34667777777776555556666777777777777654

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.09  E-value=0.021  Score=62.22  Aligned_cols=60  Identities=15%  Similarity=0.112  Sum_probs=38.3

Q ss_pred             cceEecCCceEEEEEEec-CCcEEEEEEEcccch-------HHHHHHHHHHHHHHhcCC--CCce-EEEee
Q 047196          680 ENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA-------MALKSFEAECEVMKNIRH--RNHV-KRISS  739 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-------~~~~~~~~Ei~~l~~l~H--~niv-~~~~~  739 (827)
                      .+.+|.|..+.||+++.. +++.|+||.......       ....++..|+++++.+++  +..| +.+.+
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~  105 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS  105 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE
Confidence            357899999999999754 468899998643211       123456789999988743  3444 34433

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=94.99  E-value=0.036  Score=59.30  Aligned_cols=64  Identities=8%  Similarity=-0.034  Sum_probs=41.1

Q ss_pred             cceE-ecCCceEEEEEEec-------CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCC---CCceEEEeeeecC
Q 047196          680 ENLI-GVGSFGSVYKGRLH-------DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRH---RNHVKRISSCSNE  743 (827)
Q Consensus       680 ~~~i-G~G~fg~Vy~~~~~-------~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H---~niv~~~~~~~~~  743 (827)
                      .+.+ +.|..+.+|+.+..       +|+.+++|+-....   ......+.+|+++++.++.   -.+.+.+.++.+.
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~  102 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTG  102 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSS
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCC
Confidence            3567 78889999998754       25678888754322   0012457789888888753   2355566666543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=94.93  E-value=0.15  Score=53.13  Aligned_cols=94  Identities=9%  Similarity=-0.003  Sum_probs=54.5

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCC---ceEEEeeeec-C--Cceeeeeecc
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN---HVKRISSCSN-E--DFKALDCLHS  753 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~n---iv~~~~~~~~-~--~~~~l~~l~~  753 (827)
                      .+.++.|....||+.    |..++||+-.  .......+.+|+++++.+++..   +-+.+.++.. .  .+.+++++..
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            356888999999987    5678888743  2234567899999999998632   3344444432 1  2333443332


Q ss_pred             CC------CCCCHHHHHHHHHHHHHHHHHHHh
Q 047196          754 TN------CSLNIFDKLNIMIDVASALEYLHF  779 (827)
Q Consensus       754 ~~------~~l~~~~~~~i~~~ia~~L~~Lh~  779 (827)
                      ..      ..++..++..++.++++.++.||.
T Consensus        98 ~~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~  129 (306)
T 3tdw_A           98 QILGEDGMAVLPDDAKDRLALQLAEFMNELSA  129 (306)
T ss_dssp             EECHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eECchhhhhhCCHHHHHHHHHHHHHHHHHHhc
Confidence            11      112333445555666666655553

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=93.76  E-value=0.38  Score=48.86  Aligned_cols=61  Identities=13%  Similarity=0.012  Sum_probs=39.7

Q ss_pred             eEecCCce-EEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCC-CCceEEEeeeecCCc
Q 047196          682 LIGVGSFG-SVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRH-RNHVKRISSCSNEDF  745 (827)
Q Consensus       682 ~iG~G~fg-~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H-~niv~~~~~~~~~~~  745 (827)
                      .+..|..| .||+.... ++..+.||+-...   ....+.+|.+.|+.+.. -.+-+.++++.+++.
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~   94 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDD   94 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCe
Confidence            35556555 69987754 4677889986433   34567889999998853 223456666665543

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=90.46  E-value=0.38  Score=49.89  Aligned_cols=93  Identities=6%  Similarity=-0.050  Sum_probs=49.7

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCce-EEEeeeecCCceeeeeeccCCCCC
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV-KRISSCSNEDFKALDCLHSTNCSL  758 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv-~~~~~~~~~~~~~l~~l~~~~~~l  758 (827)
                      .+.++.|....+|+.     ..+.+|+-...... .....+|+++++.+....+. ++++.+.+.....++++. ....+
T Consensus        23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~~~~~~~v~e~i~-~g~~l   95 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVDPATGVMVTRYIA-GAQTM   95 (301)
T ss_dssp             CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEECTTTCCEEEECCT-TCEEC
T ss_pred             eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEECCCCEEEEeecC-CCccC
Confidence            567899999999998     45788886543211 11235688777777543343 444444333445555551 11222


Q ss_pred             CHHHH---HHHHHHHHHHHHHHHh
Q 047196          759 NIFDK---LNIMIDVASALEYLHF  779 (827)
Q Consensus       759 ~~~~~---~~i~~~ia~~L~~Lh~  779 (827)
                      +....   -.+...+++.|+-+|.
T Consensus        96 ~~~~~~~~~~~~~~~~~~La~lH~  119 (301)
T 3dxq_A           96 SPEKFKTRPGSPARAGEAFRKLHG  119 (301)
T ss_dssp             CHHHHHHSTTHHHHHHHHHHHHHT
T ss_pred             CHhhHhhhHHHHHHHHHHHHHHhC
Confidence            22111   1245556666666653

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=87.95  E-value=1.4  Score=48.04  Aligned_cols=26  Identities=19%  Similarity=0.132  Sum_probs=20.9

Q ss_pred             cceEecCCceEEEEEEecCCcEEEEEE
Q 047196          680 ENLIGVGSFGSVYKGRLHDGIEVAIKV  706 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~  706 (827)
                      .+.+|.|..+.||+... +++.++||.
T Consensus        39 i~~l~~G~~n~vyrv~~-~~~~~vvK~   64 (420)
T 2pyw_A           39 IKEVGDGNLNFVFIVVG-SSGSLVIKQ   64 (420)
T ss_dssp             EEECCCSSSCEEEEEEC-SSCEEEEEE
T ss_pred             EEEccCCCcEEEEEEEc-CCceEEEEE
Confidence            35688999999999964 467899994

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=87.43  E-value=2.1  Score=44.81  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=24.0

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhc
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI  728 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l  728 (827)
                      +.++.|..+.||+....+| .+++|+.... .   .+...|+++++.+
T Consensus        38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~-~---~~~~~e~~~l~~L   80 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP-E---KKALFSIFAQDYL   80 (346)
T ss_dssp             EECC----CEEEEEEETTE-EEEEEEECSC-H---HHHHHHHHHHHHH
T ss_pred             eeccccccCcEEEEEeCCC-CEEEEecCCC-H---HHHHHHHHHHHHH
Confidence            3456677899999987655 4889988652 1   2233445545444

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=86.81  E-value=1.5  Score=45.59  Aligned_cols=62  Identities=8%  Similarity=0.102  Sum_probs=35.3

Q ss_pred             cchhHHHHHhhcccc-----cceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC
Q 047196          665 FSYQDLFRATEKFSK-----ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR  729 (827)
Q Consensus       665 ~~~~~~~~~~~~~~~-----~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~  729 (827)
                      ++.+++....+.|..     .+.++.|....+|+.+..+| .+++|+.....  ..+.+..|+++++.++
T Consensus         7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~   73 (322)
T 2ppq_A            7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLA   73 (322)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHH
Confidence            344455544444543     23466788899999987666 57789876521  1234566777777664

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=83.21  E-value=1.2  Score=47.40  Aligned_cols=53  Identities=17%  Similarity=0.239  Sum_probs=30.1

Q ss_pred             ceEecCCceEEEEEEecC---------CcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCce
Q 047196          681 NLIGVGSFGSVYKGRLHD---------GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV  734 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~---------g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv  734 (827)
                      ..++.|....+|+....+         ++.+.+|+...... .......|.++++.+....++
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~  100 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIA  100 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSS
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCC
Confidence            456778888999998654         26788888654322 111235788888777533444

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=82.23  E-value=3  Score=43.35  Aligned_cols=47  Identities=11%  Similarity=0.103  Sum_probs=32.5

Q ss_pred             ceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC
Q 047196          681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR  729 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~  729 (827)
                      ..++ |....||+....+|+.+++|+..... .....+..|.++++.++
T Consensus        32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~   78 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLV   78 (328)
T ss_dssp             EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHH
T ss_pred             Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHH
Confidence            3466 77889999877778789999985321 12345667888777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	827
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-30
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	9e-29
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-28
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-27
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-27
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-26
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-26
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-26
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-26
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-25
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-25
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	7e-25
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-24
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-24
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-24
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-23
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-23
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-23
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-23
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-23
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-23
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-23
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-07
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-22
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-22
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-22
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	9e-22
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-21
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-21
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-20
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-20
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-20
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-20
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	5e-20
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	6e-20
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	9e-20
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-19
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-19
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-19
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	5e-19
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-18
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-18
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-18
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-18
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-18
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-18
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	7e-18
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-17
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-17
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-17
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-17
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-17
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-17
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-17
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-17
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-17
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	1e-16
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-16
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-16
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	5e-16
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-14
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 1e-30
 Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E       +G G FG V+ G  +   +VA+K   Q  +M+  +F AE  +MK ++H+  V
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLV 71

Query: 735 KRISSCSNEDF----------KALDCLHS-TNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +  +  + E              +D L + +   L I   L++   +A  + ++      
Sbjct: 72  RLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFI---EER 128

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
             IH DL+  N+           DFG+ RL+  +    +      I + AP  +
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAI 182

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (287), Expect = 9e-29
 Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 42/199 (21%)

Query: 665 FSYQDLFRATEKFSKE---------NLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNC 711
           F+++D   A  +F+KE          +IG G FG V  G L       I VAIK      
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 712 AM-ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK------- 763
                + F +E  +M    H N +      +      +      N SL+ F +       
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFT 126

Query: 764 ----LNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS 809
               + ++  +A+ ++YL   +    +H DL  +N+           DFG+ R L  D S
Sbjct: 127 VIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 183

Query: 810 MIQTETLV----TIGYMAP 824
                + +     I + AP
Sbjct: 184 DPTYTSALGGKIPIRWTAP 202

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 2e-28
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMA--LKSFEAECEVMKNIRHRN 732
            + +    IG GSFG+VYKG+ H   +VA+K+ +        L++F+ E  V++  RH N
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65

Query: 733 HVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
            +  +   +                   LH       +   ++I    A  ++YLH    
Sbjct: 66  ILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK-- 123

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAP 824
             +IH DLK  N+F          DFG+  + +      Q E L  +I +MAP
Sbjct: 124 -SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 1e-27
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 25/174 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           E    E  +G G FG V+ G  +    VAIK       M+ ++F  E +VMK +RH   V
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 75

Query: 735 KRISSCSNEDF-----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +  +  S E                     T   L +   +++   +AS + Y+   +  
Sbjct: 76  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN-- 133

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
             +H DL+  N+           DFG+ RL+  +    +      I + AP   
Sbjct: 134 -YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAA 186

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 3e-27
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 27/188 (14%)

Query: 663 RRFSYQDLFRATEKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAE 721
              +Y          + ++ +G G +G VY+G      + VA+K   ++  M ++ F  E
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKE 63

Query: 722 CEVMKNIRHRNHVKRISSCSNEDF-----------KALDCLHSTN-CSLNIFDKLNIMID 769
             VMK I+H N V+ +  C+ E               LD L   N   ++    L +   
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQ 123

Query: 770 VASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTI 819
           ++SA+EYL        IH DL  +N            DFG+ RL+TGD           I
Sbjct: 124 ISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 180

Query: 820 GYMAPGLL 827
            + AP  L
Sbjct: 181 KWTAPESL 188

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 1e-26
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 25/174 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           +  +    +G G FG V  G+     +VAIK+  +  +M+   F  E +VM N+ H   V
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLV 62

Query: 735 KRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHST 783
           +    C+ +    +           + L            L +  DV  A+EYL      
Sbjct: 63  QLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ-- 120

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
             +H DL  +N            DFG+ R +  D       +   + +  P +L
Sbjct: 121 -FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVL 173

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 3e-26
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 673 ATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRH 730
             + F K + +G G+ G V+K      G+ +A K+ H +           E +V+     
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 731 RNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
              V    +  ++             +LD +      +       + I V   L YL   
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK 123

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           H   ++H D+KP N+           DFG+   L    +      + T  YM+P  L
Sbjct: 124 HK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA---NSFVGTRSYMSPERL 175

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 3e-26
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 30/187 (16%)

Query: 668 QDLFRATEKFSKENL-IGVGSFGSVYKGRLH---DGIEVAIKVFHQN-CAMALKSFEAEC 722
           + LF   +     ++ +G G+FGSV +G        I+VAIKV  Q       +    E 
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 723 EVMKNIRHRNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVAS 772
           ++M  + +   V+ I  C  E                 L      + + +   ++  V+ 
Sbjct: 61  QIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM 120

Query: 773 ALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV--TIG 820
            ++YL        +H DL  +NV           DFG+ + L  D S     +     + 
Sbjct: 121 GMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLK 177

Query: 821 YMAPGLL 827
           + AP  +
Sbjct: 178 WYAPECI 184

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 6e-26
 Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 25/171 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
            + +    IG G FG V+ G   +  +VAIK   +  AM+ + F  E EVM  + H   V
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLV 63

Query: 735 KRISSCSNEDFKALDCLHSTNCSLNIFDK-----------LNIMIDVASALEYLHFSHST 783
           +    C  +    L      +  L+ + +           L + +DV   + YL      
Sbjct: 64  QLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEA 120

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            VIH DL  +N            DFG+ R +  D+    T T   + + +P
Sbjct: 121 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 171

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (267), Expect = 6e-26
 Identities = 42/175 (24%), Positives = 62/175 (35%), Gaps = 32/175 (18%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM---ALKSFEAECEVMKNIR 729
            + FS    IG GSFG+VY  R + +   VAIK    +        +    E   ++ +R
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 730 HRNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHF 779
           H N ++       E             A D L      L   +   +       L YL  
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYL-- 131

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            HS  +IH D+K  N+           DFG   ++    S +      T  +MAP
Sbjct: 132 -HSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVG-----TPYWMAP 180

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 5e-25
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 28/177 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH-QNCAMALKSFEAECEVMKNIRHRN 732
           E +     +G G++G V           VA+K+   +      ++ + E  + K + H N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 733 HVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            VK        + + L           D +   +  +   D       + + + YLH   
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLH--- 120

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
              + H D+KP+N+           DFG+  +   +        +  T+ Y+AP LL
Sbjct: 121 GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 177

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 6e-25
 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 29/172 (16%)

Query: 679 KENLIGVGSFGSVYKGRLHD---GIEVAIKVFHQ--NCAMALKSFEAECEVMKNIRHRNH 733
           ++  +G G+FG+V KG          VA+K+     N         AE  VM+ + +   
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70

Query: 734 VKRISSCSNEDF---------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
           V+ I  C  E +           L+     N  +   + + ++  V+  ++YL  S+   
Sbjct: 71  VRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN--- 127

Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV--TIGYMAP 824
            +H DL  +NV           DFG+ + L  D +  + +T     + + AP
Sbjct: 128 FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAP 179

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 7e-25
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 22/178 (12%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM---ALKSFEAECEVMKN 727
           +  E F    ++G GSF +V   R L    E AIK+  +   +    +     E +VM  
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 728 IRHRNHVKRISSCSNEDFKAL-------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
           + H   VK   +  +++             L      +  FD+       A  +  L + 
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL 124

Query: 781 HSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLV-TIGYMAPGLL 827
           H   +IH DLKP+N          + DFG  ++L+ +    +  + V T  Y++P LL
Sbjct: 125 HGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 182

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 1e-24
 Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 34/180 (18%)

Query: 676 KFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFH--QNCAMALKSFEAECEVMKNIRHRN 732
           KF  E  IG GSF +VYKG   +  +EVA       +      + F+ E E++K ++H N
Sbjct: 12  KFDIE--IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN 69

Query: 733 HVKRISSCSNE--------------DFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLH 778
            V+   S  +                   L         + I    +    +   L++LH
Sbjct: 70  IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLH 129

Query: 779 FSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            + + P+IH DLK  N+F           D G+  L     +      + T  +MAP + 
Sbjct: 130 -TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA---KAVIGTPEFMAPEMY 185

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 2e-24
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 26/176 (14%)

Query: 674 TEKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            + +     +G G+FG VYK +  +  +  A KV        L+ +  E +++ +  H N
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN 70

Query: 733 HVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
            VK + +   E+   +             +      L       +      AL YL   H
Sbjct: 71  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYL---H 127

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
              +IH DLK  N+           DFG+    T       +  + T  +MAP ++
Sbjct: 128 DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS-FIGTPYWMAPEVV 182

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (248), Expect = 8e-24
 Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 32/184 (17%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM--ALKSFEAECEVMKNIRHR 731
           E +     IG GS+G   K R   DG  +  K            +   +E  +++ ++H 
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63

Query: 732 NHVKRISSCSNED----------------FKALDCLHSTNCSLNIFDKLNIMIDVASALE 775
           N V+      +                     +         L+    L +M  +  AL+
Sbjct: 64  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 123

Query: 776 YLHFSH--STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMA 823
             H        V+H DLKP NVF          DFG+ R+L  D S  +     T  YM+
Sbjct: 124 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFV-GTPYYMS 182

Query: 824 PGLL 827
           P  +
Sbjct: 183 PEQM 186

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (247), Expect = 1e-23
 Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 33/176 (18%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           ++      IG G FG V  G  + G +VA+K    +     ++F AE  VM  +RH N V
Sbjct: 7   KELKLLQTIGKGEFGDVMLGD-YRGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLV 63

Query: 735 KRISSCSNEDFK------------ALDCLHSTNCS-LNIFDKLNIMIDVASALEYLHFSH 781
           + +     E                +D L S   S L     L   +DV  A+EYL    
Sbjct: 64  QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL---E 120

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
               +H DL  +NV           DFG+ +  +  +   +      + + AP  L
Sbjct: 121 GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL----PVKWTAPEAL 172

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 1e-23
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 32/179 (17%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG-----IEVAIKVFHQNCAM-ALKSFEAECEVMKNI 728
              +++ +IG G FG VYKG L        + VAIK             F  E  +M   
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 729 RHRNHVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYL 777
            H N ++     S      +             L   +   ++   + ++  +A+    +
Sbjct: 67  SHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG---M 123

Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET--LVTIGYMAP 824
            +  +   +H DL  +N+           DFG+ R+L  D     T +   + I + AP
Sbjct: 124 KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAP 182

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 24/171 (14%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRN 732
            +K+++   IG G+ G+VY    +  G EVAI+  +       +    E  VM+  ++ N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 733 HVKRISSCSNEDFKALDCLHSTNCSLNIF---------DKLNIMIDVASALEYLHFSHST 783
            V  + S    D   +   +    SL                +  +   ALE+L   HS 
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFL---HSN 135

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            VIH D+K  N+           DFG    +T ++S  ++  + T  +MAP
Sbjct: 136 QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVGTPYWMAP 185

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-23
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 31/182 (17%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKGRLHD-----GIEVAIKVFHQ-NCAMALKSFEAECE 723
           + + TE F K  ++G G+FG+VYKG          I VAIK   +     A K    E  
Sbjct: 5   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 63

Query: 724 VMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK----------LNIMIDVASA 773
           VM ++ + +  + +  C     + +  L    C L+   +          LN  + +A  
Sbjct: 64  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 123

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV-TIGYM 822
           + YL       ++H DL  +NV           DFG+ +LL  +      E     I +M
Sbjct: 124 MNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 180

Query: 823 AP 824
           A 
Sbjct: 181 AL 182

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  100 bits (251), Expect = 1e-23
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 29/174 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
           + +     +G G+FG V++      G   A K          ++   E + M  +RH   
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 734 VKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
           V    +  +++   +           + +   +  ++  + +  M  V   L ++   H 
Sbjct: 86  VNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHM---HE 142

Query: 783 TPVIHCDLKPKNVF------------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
              +H DLKP+N+             DFG+   L   +S+  T    T  + AP
Sbjct: 143 NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTG--TAEFAAP 194

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 2e-23
 Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 30/174 (17%)

Query: 675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQ---NCAMALKSFEAECEVMKNIRH 730
           E F     +G G FG+VY  R       +A+KV  +     A        E E+  ++RH
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSLNIF----------DKLNIMIDVASALEYLHFS 780
            N ++      +     L   ++   ++                  + ++A+AL Y H  
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH-- 123

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
            S  VIH D+KP+N+           DFG        R         T+ Y+ P
Sbjct: 124 -SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLC---GTLDYLPP 173

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 99.0 bits (246), Expect = 6e-23
 Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 29/177 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
           + +     +G G+FG V++      G     K  +    +   + + E  +M  + H   
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 734 VKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
           +    +  ++    L           D + + +  ++  + +N M      L+++   H 
Sbjct: 89  INLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHM---HE 145

Query: 783 TPVIHCDLKPKNVF------------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
             ++H D+KP+N+             DFG+   L  D  +    T  T  + AP ++
Sbjct: 146 HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKV--TTATAEFAAPEIV 200

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 96.4 bits (238), Expect = 3e-22
 Identities = 75/315 (23%), Positives = 126/315 (40%), Gaps = 35/315 (11%)

Query: 55  TDQQALLALKAHISYDPTNLLAQNSTSNTSVCNWIGITCNVNS--HRVTALNISSLNLQG 112
            D+QALL +K  +  +PT L +   T++     W+G+ C+ ++  +RV  L++S LNL  
Sbjct: 6   QDKQALLQIKKDLG-NPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64

Query: 113 --TIPPQLGNLSSLTTLNLSHN-KLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNL 169
              IP  L NL  L  L +     L G IPP+I  + +L +L  +               
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN------------ 112

Query: 170 SSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFK 229
                              +  + +  L  L  + N   G +P ++S    L  +     
Sbjct: 113 -------------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 230 KLSGAIPKEISNLTILRK-ISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIF 288
           ++SGAIP    + + L   +++  N+L G+IP     L      +               
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 289 NMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMG 348
           + +T K     ++    +F LG      N+  L+L  NR  GT+P  +T    L  L++ 
Sbjct: 220 DKNTQKIHLAKNSL---AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 349 TNSFSGIIPNTIGLT 363
            N+  G IP    L 
Sbjct: 277 FNNLCGEIPQGGNLQ 291

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 78/285 (27%), Positives = 125/285 (43%), Gaps = 24/285 (8%)

Query: 337 TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNC-NIGGS 395
           T   ++  LD+   +     P             +P+S+ NL   L  +YI    N+ G 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYP-------------IPSSLANLP-YLNFLYIGGINNLVGP 92

Query: 396 IPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLN 455
           IP  I+ L+ L  L +    ++G+IP    +++ L  L   +N L+G++P  +  L  L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 456 TLGLAGNKFSGSIPSCLGNLTSLRS-PDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDG 514
            +   GN+ SG+IP   G+ + L +   +  NRLT  +P TF N    L F   S ++  
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLE 210

Query: 515 PLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YL 571
             +  +              N        +G  K+L  + L  N + G +P+      +L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 572 TELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKC 616
             LN+SFN L GEIP+GG    F   ++  N+ LCG P    P C
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 86  CNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTM 145
                +     S  +  L++ +  + GT+P  L  L  L +LN+S N L G+I P    +
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNL 290

Query: 146 HKLKFLDFSDNQ-LSGS 161
            +     +++N+ L GS
Sbjct: 291 QRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 122 SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDK 181
            +L  L+L +N++ G +P  +  +  L  L+ S N L G +     NL         ++K
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

Query: 182 LSGELPVNIC 191
                P+  C
Sbjct: 303 CLCGSPLPAC 312

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 3e-22
 Identities = 39/182 (21%), Positives = 59/182 (32%), Gaps = 32/182 (17%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH----DGIEVAIKVFHQNCAM---ALKSFEAECEVMKN 727
           +       +G GSFG V +G         + VA+K    +      A+  F  E   M +
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 728 IRHRNHVKRISSCSNEDFK----------ALDCLHSTNCSLNIFDKLNIMIDVASALEYL 777
           + HRN ++          K           LD L        +       + VA  + YL
Sbjct: 68  LDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL 127

Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV--TIGYMAPG 825
               S   IH DL  +N+           DFG+ R L  +      +        + AP 
Sbjct: 128 ---ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPE 184

Query: 826 LL 827
            L
Sbjct: 185 SL 186

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 95.3 bits (236), Expect = 4e-22
 Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFH--QNCAMALKSFEAECEVMKNIRHRN 732
           EK+     IG G++G VYK + + G   A+K     +       +   E  ++K ++H N
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 733 HVKRISSCSNEDFKALDCLHSTNCSLNIFDKLN-------IMIDVASALEYLHFSHSTPV 785
            VK       +    L   H       + D              +   L  + + H   V
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRV 121

Query: 786 IHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           +H DLKP+N+           DFG+ R             +VT+ Y AP +L
Sbjct: 122 LHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTH-EIVTLWYRAPDVL 172

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 6e-22
 Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 28/178 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD----GIEVAIKVFHQNCAMALKS-FEAECEVMKNIR 729
           E+      IG G FG V++G         + VAIK      + +++  F  E   M+   
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 730 HRNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHF 779
           H + VK I   +              +    L     SL++   +     +++AL YL  
Sbjct: 67  HPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL-- 124

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
             S   +H D+  +NV           DFG+ R +        ++  + I +MAP  +
Sbjct: 125 -ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESI 181

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 9e-22
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%)

Query: 670 LFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQ-NCAMALKSFEAECEVMKN 727
           +F    +++  + IG G++G V       + + VAIK           +    E +++  
Sbjct: 3   VFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLR 62

Query: 728 IRHRNHVKRISSCSNEDFKALDCLHSTN--CSLNIFDKLN--------IMIDVASALEYL 777
            RH N +           + +  ++        +++  L         I   +   L  L
Sbjct: 63  FRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGL 122

Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV--TIGYMAPG 825
            + HS  V+H DLKP N+           DFG+ R+   D       T    T  Y AP 
Sbjct: 123 KYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPE 182

Query: 826 LL 827
           ++
Sbjct: 183 IM 184

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 1e-21
 Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 33/179 (18%)

Query: 680 ENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISS 739
           +  IG G FG V++G+   G EVA+K+F      +    EAE      +RH N +  I++
Sbjct: 8   QESIGKGRFGEVWRGK-WRGEEVAVKIFSSREERSWF-REAEIYQTVMLRHENILGFIAA 65

Query: 740 CSNEDFKALDCL-------------HSTNCSLNIFDKLNIMIDVASALEYLH-----FSH 781
            + ++                    +    ++ +   + + +  AS L +LH        
Sbjct: 66  DNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQG 125

Query: 782 STPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTET---LVTIGYMAPGLL 827
              + H DLK KN+           D G+          I       + T  YMAP +L
Sbjct: 126 KPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL 184

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.8 bits (232), Expect = 2e-21
 Identities = 38/185 (20%), Positives = 62/185 (33%), Gaps = 36/185 (19%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR 729
            R   ++     IG GSFG +Y G  +  G EVAIK+              E ++ K ++
Sbjct: 3   LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK--TKHPQLHIESKIYKMMQ 60

Query: 730 HRNHVKRISSCSNEDFK-----------ALDCLHSTNCSLNIFDKLNIMIDVASALEYLH 778
               +  I  C  E                D  +  +   ++   L +   + S +EY+H
Sbjct: 61  GGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH 120

Query: 779 FSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDRSMIQ------TETLVTI 819
             +    IH D+KP N               DFG+ +     R+              T 
Sbjct: 121 SKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTA 177

Query: 820 GYMAP 824
            Y + 
Sbjct: 178 RYASI 182

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 1e-20
 Identities = 39/202 (19%), Positives = 68/202 (33%), Gaps = 55/202 (27%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD------GIEVAIKVFHQNC-AMALKSFEAECEVMKN 727
           E      ++G G+FG V     +        I+VA+K+  +   +   ++  +E ++M  
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 728 I-RHRNHVKRISSCSNEDFKAL-----------DCLHSTN-------------------- 755
           +  H N V  + +C+      L           + L S                      
Sbjct: 97  LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEE 156

Query: 756 --CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL 803
               L   D L     VA  +E+L        +H DL  +NV           DFG+ R 
Sbjct: 157 DLNVLTFEDLLCFAYQVAKGMEFL---EFKSCVHRDLAARNVLVTHGKVVKICDFGLARD 213

Query: 804 LTGDRSMIQTETLV-TIGYMAP 824
           +  D + +        + +MAP
Sbjct: 214 IMSDSNYVVRGNARLPVKWMAP 235

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 89.8 bits (222), Expect = 3e-20
 Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 33/181 (18%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM---ALKSFEAECEVMKNIR 729
           ++++    ++G G    V+  R L    +VA+KV   + A        F  E +    + 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 730 HRNHVKRISSCSNEDFKA--------------LDCLHSTNCSLNIFDKLNIMIDVASALE 775
           H   V    +   E                  L  +  T   +     + ++ D   AL 
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 125

Query: 776 YLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLV--TIGYMA 823
           +    H   +IH D+KP N          V DFGI R +    + +     V  T  Y++
Sbjct: 126 FS---HQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLS 182

Query: 824 P 824
           P
Sbjct: 183 P 183

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 89.9 bits (222), Expect = 3e-20
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 38/183 (20%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH 733
             +     IG GSFG +++G  L +  +VAIK   +           E    K +     
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR--SDAPQLRDEYRTYKLLAGCTG 62

Query: 734 VKRISSCSNED-----------FKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
           +  +     E                D L       ++         + + ++ +H    
Sbjct: 63  IPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS- 121

Query: 783 TPVIHCDLKPKNVF---------------DFGIGRLLTGDRS-----MIQTETLV-TIGY 821
             +++ D+KP N                 DFG+ +      +       + + L  T  Y
Sbjct: 122 --LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARY 179

Query: 822 MAP 824
           M+ 
Sbjct: 180 MSI 182

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.8 bits (222), Expect = 4e-20
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 31/177 (17%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM---ALKSFEAECEVMKNIRH 730
           + F     +G GSFG V+  R  H+G   A+KV  +   +    ++    E  ++  + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 731 RNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
              ++   +  +               L  L   +             +V  ALEYLH  
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLH-- 121

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            S  +I+ DLKP+N+           DFG  + +      +      T  Y+AP ++
Sbjct: 122 -SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCG----TPDYIAPEVV 173

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 5e-20
 Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 50/200 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMA-LKSFEAECEVMKN 727
            + S    +G G+FG V +   +        + VA+K+   +  +   ++  +E +V+  
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 728 I-RHRNHVKRISSCSNEDFKAL----------------------------DCLHSTNCSL 758
           +  H N V  + +C+      +                              +     +L
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL 142

Query: 759 NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR 808
           ++ D L+    VA  + +L    S   IH DL  +N+           DFG+ R +  D 
Sbjct: 143 DLEDLLSFSYQVAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199

Query: 809 S-MIQTETLVTIGYMAPGLL 827
           + +++    + + +MAP  +
Sbjct: 200 NYVVKGNARLPVKWMAPESI 219

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 6e-20
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 21/173 (12%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH--QNCAMALKSFEAECEVMKNIRHR 731
           +K+ K   IG G++G+V+K +       VA+K      +      S   E  ++K ++H+
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMID-------VASALEYLHFSHSTP 784
           N V+      ++    L            FD  N  +D       +   L+ L F HS  
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN 121

Query: 785 VIHCDLKPKN----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           V+H DLKP+N          + +FG+ R          +  +VT+ Y  P +L
Sbjct: 122 VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC-YSAEVVTLWYRPPDVL 173

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.4 bits (218), Expect = 9e-20
 Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 55/214 (25%)

Query: 666 SYQDLFRATEKFSKENLIGVGSFGSVYKGRL------HDGIEVAIKVFHQNCAM-ALKSF 718
               L            IG G+FG V++ R            VA+K+  +  +      F
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADF 63

Query: 719 EAECEVMKNIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCS---------- 757
           + E  +M    + N VK +  C+      L           + L S +            
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL 123

Query: 758 -------------LNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------- 796
                        L+  ++L I   VA+ + YL        +H DL  +N          
Sbjct: 124 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYL---SERKFVHRDLATRNCLVGENMVVK 180

Query: 797 --DFGIGRLL-TGDRSMIQTETLVTIGYMAPGLL 827
             DFG+ R + + D         + I +M P  +
Sbjct: 181 IADFGLSRNIYSADYYKADGNDAIPIRWMPPESI 214

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 1e-19
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 665 FSYQDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH------QNCAMALKS 717
           F  +++    + +     +G G F  V K R    G++ A K             ++ + 
Sbjct: 3   FRQENV---DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSRED 59

Query: 718 FEAECEVMKNIRHRNHVKRISSCSNEDFKAL-------DCLHSTNCSLNIFDKLNIMIDV 770
            E E  ++K I+H N +       N+    L         L           +      +
Sbjct: 60  IEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFL 119

Query: 771 ASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRLLTGDRSMIQTETL 816
              L  +++ HS  + H DLKP+N+               DFG+   +            
Sbjct: 120 KQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF--KNIF 177

Query: 817 VTIGYMAPGLL 827
            T  ++AP ++
Sbjct: 178 GTPEFVAPEIV 188

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 1e-19
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA---LKSFEAECEVMKNIRH 730
             F    L+G G+FG V   R    G   A+K+  +   +A   +     E  V++N RH
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 731 RNHVKRISSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMIDVASALEYLHFSHST 783
                   +    D       ++    L        +F +       A  +  L + HS 
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR 124

Query: 784 PVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
            V++ D+K +N+           DFG+ +    D + ++T    T  Y+AP +L
Sbjct: 125 DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFC-GTPEYLAPEVL 177

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 89.7 bits (221), Expect = 1e-19
 Identities = 86/388 (22%), Positives = 148/388 (38%), Gaps = 49/388 (12%)

Query: 99  RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQL 158
           +VT L    L ++ +I   +  L++LT +N S+N+L+   P  +  + KL  +  ++NQ+
Sbjct: 45  QVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100

Query: 159 SGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKC 218
           +           + L +  +       L          L    ++       +       
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN 278
              Q+ +           K ++NLT L ++ + +N  +      +  L NLE+L+   N 
Sbjct: 161 FGNQVTD----------LKPLANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNNQ 208

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN 338
           +  + P  +  ++ + ++ L  N L    +L    SL N+  L+L  N+ S   P  ++ 
Sbjct: 209 ISDITP--LGILTNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSG 261

Query: 339 ASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQ 398
            +KL  L +G N  S I P                 +  L+         N         
Sbjct: 262 LTKLTELKLGANQISNISP-----------------LAGLTALTNLELNENQLE---DIS 301

Query: 399 LISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLG 458
            ISNL NL  L L  N ++   P     L KLQ L+   NK+  S    L +L  +N L 
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLS 357

Query: 459 LAGNKFSGSIPSCLGNLTSLRSPDLGSN 486
              N+ S   P  L NLT +    L   
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 1e-17
 Identities = 84/381 (22%), Positives = 145/381 (38%), Gaps = 29/381 (7%)

Query: 202 LAKNMFHGQIPLA-LSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIP 260
           L K      +    L +   LQ   LG K + G     +  L  L +I+  NN+L    P
Sbjct: 29  LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 83

Query: 261 HEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVER 320
             +  L  L ++++  N       A I  ++ +  +  L         +    +L N+ R
Sbjct: 84  --LKNLTKLVDILMNNNQ-----IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 321 LNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG-LTGNPLDGVLPTSIGNLS 379
           L L  N  S         + + +           +   T         + V   S+    
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 380 MSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNK 439
            +LE++  +N  I    P  I   +NL  L L GN+L      T   L  L  L L  N+
Sbjct: 197 TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252

Query: 440 LAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNL 499
           ++   P  L  L +L  L L  N+ S   P     LT+L + +L  N+L     S   NL
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED--ISPISNL 306

Query: 500 KDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNG 559
           K++ +  L  N++       + +L  +  +  + N  S    S++ +L ++  +S   N 
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 560 LEGLIP-ESFGYLTELNLSFN 579
           +  L P  +   +T+L L+  
Sbjct: 363 ISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 5e-15
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 15/212 (7%)

Query: 66  HISYDPTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLT 125
                    L    +   +      IT       +  L+++   L+      L +L++LT
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 244

Query: 126 TLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGE 185
            L+L++N++S   P  +  + KL  L    NQ+S         L+ +  +       +  
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-----SPLAGLTALTNLELNENQL 297

Query: 186 LPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTIL 245
             ++  + L  L  L L  N      P+  S   +LQ L     K+S      ++NLT +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 246 RKISLRNNKLRGEIPHEIGYLPNLENLVLGFN 277
             +S  +N++    P  +  L  +  L L   
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 60/387 (15%), Positives = 123/387 (31%), Gaps = 43/387 (11%)

Query: 168 NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLG 227
            L+  +   L    ++  +     + +  L+   L      G     +     L  +N  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 228 FKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAI 287
             +L+   P  + NLT L  I + NN++    P           L       +  +    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 288 FNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDM 347
                      + +    S   G+           +   +    + +          +  
Sbjct: 133 NLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 348 GTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLL 407
            +         ++  T N +  + P  I     +L+ + ++   +       +++L+NL 
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLT 244

Query: 408 LLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP--------------------DQ 447
            LDL  N+++   P     L KL  L L  N+++   P                      
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302

Query: 448 LCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDL 507
           + +L  L  L L  N  S   P  + +LT L+     +N+++    S+  NL +I +   
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 508 SSNSLDGPLSLDIGNLRVVIGINLSRN 534
             N +     L   NL  +  + L+  
Sbjct: 359 GHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 60/335 (17%), Positives = 104/335 (31%), Gaps = 51/335 (15%)

Query: 289 NMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMG 348
            ++   K  L   ++  + S      L  V  L              +   + L  ++  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFS 74

Query: 349 TNSFSGIIP--NTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNL 406
            N  + I P  N   L    ++      I  L+       ++  N   +    + NL+NL
Sbjct: 75  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 407 LLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFN-----------------KLAGSIPDQLC 449
             L+L  N ++    ++     +                              S    L 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 450 HLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSS 509
            L  L +L    N+ S   P     LT+L    L  N+L      T  +L ++   DL++
Sbjct: 195 KLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 510 NSLDGPLSLDIGNLRVVIGINLSRNNFSGDIP--------------------STIGDLKD 549
           N +     L    L  +  + L  N  S   P                    S I +LK+
Sbjct: 251 NQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 550 LQNISLACNGLEGLIP-ESFGYLTELNLSFNKLEG 583
           L  ++L  N +  + P  S   L  L  + NK+  
Sbjct: 309 LTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 522 NLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFGY---LTELNLSF 578
            L   +   L + N +  +  +  DL  +  +     G++ +  +   Y   LT++N S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 579 NKLEGEIP 586
           N+L    P
Sbjct: 76  NQLTDITP 83

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (214), Expect = 2e-19
 Identities = 60/268 (22%), Positives = 92/268 (34%), Gaps = 16/268 (5%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSI 375
              +R+ L  NR S    +       L  L + +N  + I                    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-------------- 77

Query: 376 GNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL 435
             L++  +     N  +    P     L  L  L L+   L    P  F  L  LQ LYL
Sbjct: 78  -GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPST 495
             N L     D    L  L  L L GN+ S         L SL    L  NR+  V P  
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 496 FWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISL 555
           F +L  ++   L +N+L    +  +  LR +  + L+ N +  D  +       LQ    
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRG 255

Query: 556 ACNGLEGLIPESFGYLTELNLSFNKLEG 583
           + + +   +P+         L+ N L+G
Sbjct: 256 SSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 9e-16
 Identities = 51/297 (17%), Positives = 89/297 (29%), Gaps = 24/297 (8%)

Query: 122 SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDK 181
               T +     L   +P  I      + +    N++S   ++      ++  + L S+ 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 182 LSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISN 241
           L+              ++            P       RL  L+L    L    P     
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 242 LTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDN 301
           L  L+ + L++N L+         L NL +L L  N +  V   A   + ++ ++ L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 302 SLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG 361
            +           L  +  L L  N  S      +     L YL +  N +         
Sbjct: 188 RVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR---- 242

Query: 362 LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG 418
                           L   L+    S+  +  S+P     L+   L  L  N L G
Sbjct: 243 -------------ARPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 54/237 (22%), Positives = 81/237 (34%), Gaps = 4/237 (1%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
            +  + + I++    I            NL +L L  N L       F  L  L+ L L 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 437 FNKLAGSI-PDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPST 495
            N    S+ P     L RL+TL L         P     L +L+   L  N L ++   T
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 496 FWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISL 555
           F +L ++    L  N +          L  +  + L +N  +   P    DL  L  + L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 556 ACNGLEGLIPESFG---YLTELNLSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLP 609
             N L  L  E+      L  L L+ N    +      +A         +E  C LP
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 2/217 (0%)

Query: 75  LAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKL 134
           L      +  +           +         +  L+   P     L  L TL+L    L
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 135 SGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYL 194
               P     +  L++L   DN L         +L ++  + L  +++S  +P      L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGL 176

Query: 195 HYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNK 254
           H L  L L +N      P A     RL  L L    LS    + ++ L  L+ + L +N 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 255 LRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMS 291
              +          L+      + +   +P  +    
Sbjct: 237 WVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 27/193 (13%)

Query: 88  WIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHK 147
            +         R+  L++    LQ   P     L++L  L L  N L      +   +  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 148 LKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHY----------- 196
           L  L    N++S         L S+  + L  ++++   P    +               
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 197 ------------LKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTI 244
                       L+ L L  N +             LQ       ++  ++P+ ++   +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL 273

Query: 245 LRKISLRNNKLRG 257
                L  N L+G
Sbjct: 274 K---RLAANDLQG 283

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 2e-19
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 33/175 (18%)

Query: 680 ENLIGVGSFGSVYKGRLHD----GIEVAIKVFHQNCAMA-LKSFEAECEVMKNIRHRNHV 734
             +IG G FG VY G L D     I  A+K  ++   +  +  F  E  +MK+  H N +
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 91

Query: 735 KRISSCSNEDFKAL------------DCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
             +  C   +   L            + + +   +  + D +   + VA     + F  S
Sbjct: 92  SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG---MKFLAS 148

Query: 783 TPVIHCDLKPKNVF----------DFGIGRLLTG---DRSMIQTETLVTIGYMAP 824
              +H DL  +N            DFG+ R +     D    +T   + + +MA 
Sbjct: 149 KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMAL 203

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 3e-19
 Identities = 40/182 (21%), Positives = 68/182 (37%), Gaps = 40/182 (21%)

Query: 677 FSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVK 735
           ++   +IG GSFG VY+ +L D G  VAIK   Q+     +    E ++M+ + H N V+
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD----KRFKNRELQIMRKLDHCNIVR 77

Query: 736 RISS-------------------CSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEY 776
                                       ++          +L +      M  +  +L Y
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 137

Query: 777 LHFSHSTPVIHCDLKPKN-----------VFDFGIGRLLTGDRSMIQTETLVTIGYMAPG 825
           +   HS  + H D+KP+N           + DFG  + L      +    + +  Y AP 
Sbjct: 138 I---HSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSRYYRAPE 192

Query: 826 LL 827
           L+
Sbjct: 193 LI 194

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 5e-19
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 41/191 (21%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAM-ALKSFEAECEVMKN 727
           EK +    +G GSFG VY+G             VAIK  ++  +M     F  E  VMK 
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 728 IRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDK--------------------LNIM 767
               + V+ +   S      +     T   L  + +                    + + 
Sbjct: 80  FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA 139

Query: 768 IDVASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLT-GDRSMIQTETL 816
            ++A  + YL   ++   +H DL  +N          + DFG+ R +   D      + L
Sbjct: 140 GEIADGMAYL---NANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGL 196

Query: 817 VTIGYMAPGLL 827
           + + +M+P  L
Sbjct: 197 LPVRWMSPESL 207

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (212), Expect = 1e-18
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 33/181 (18%)

Query: 668 QDLFRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMK 726
           ++L+   EK+     +G G FG V++            K             + E  ++ 
Sbjct: 1   KELY---EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILN 56

Query: 727 NIRHRNHVKRISSCSNEDFKAL-----------DCLHSTNCSLNIFDKLNIMIDVASALE 775
             RHRN +    S  + +   +           + ++++   LN  + ++ +  V  AL+
Sbjct: 57  IARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQ 116

Query: 776 YLHFSHSTPVIHCDLKPKNV------------FDFGIGRLLTGDRSMIQTETLVTIGYMA 823
           +L   HS  + H D++P+N+             +FG  R L    +           Y A
Sbjct: 117 FL---HSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF--RLLFTAPEYYA 171

Query: 824 P 824
           P
Sbjct: 172 P 172

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 1e-18
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 38/189 (20%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR--LHDGIEVAIKVFHQNCA--MALKSFEAECEVMKN 727
           RA +++     IG G++G V+K R   + G  VA+K             S   E  V+++
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 728 I---RHRNHVKRISSCSNEDFKALDCL----------------HSTNCSLNIFDKLNIMI 768
           +    H N V+    C+         L                      +      ++M 
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 769 DVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVT 818
            +   L++LH   S  V+H DLKP+N+           DFG+ R+      M  T  +VT
Sbjct: 124 QLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIY--SFQMALTSVVVT 178

Query: 819 IGYMAPGLL 827
           + Y AP +L
Sbjct: 179 LWYRAPEVL 187

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 2e-18
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 30/173 (17%)

Query: 681 NLIGVGSFGSVYKGR-LHDGIEVAIKVFH-----QNCAMALKSFEAECEVMKNIRHRNHV 734
           + +G G F +VYK R  +    VAIK        +      ++   E ++++ + H N +
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 735 KRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHSTP 784
             + +  ++                 +   +  L        M+     LEYLH      
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHW 120

Query: 785 VIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           ++H DLKP N+           DFG+ +          T  +VT  Y AP LL
Sbjct: 121 ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA-YTHQVVTRWYRAPELL 172

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 4e-18
 Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 28/177 (15%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM--ALKSFEAECEVMKNIRHR 731
           E F K   IG G++G VYK R    G  VA+K    +        +   E  ++K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 732 NHVKRISSCSNEDFKALDCLHSTNCSLNIFDK-----------LNIMIDVASALEYLHFS 780
           N VK +     E+   L             D             + +  +   L +    
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC--- 118

Query: 781 HSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           HS  V+H DLKP+N+           DFG+ R          T  +VT+ Y AP +L
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT-YTHEVVTLWYRAPEIL 174

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.9 bits (207), Expect = 4e-18
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 30/179 (16%)

Query: 674 TEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM-ALKSFEAECEVMKNIRHR 731
            + +   +++G G+F  V           VAIK   +        S E E  V+  I+H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 732 NHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSH 781
           N V       +               L             D   ++  V  A++YL   H
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL---H 124

Query: 782 STPVIHCDLKPKNVF-------------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
              ++H DLKP+N+              DFG+ ++      +  +    T GY+AP +L
Sbjct: 125 DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVL--STACGTPGYVAPEVL 181

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 7e-18
 Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 30/190 (15%)

Query: 665 FSYQDLFRAT----EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCA--MALKS 717
           F  Q++ +        +     +G G++G+V        G +VAIK  ++     +  K 
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKR 63

Query: 718 FEAECEVMKNIRHRNHVKRISSCSNED--------FKALDCLHSTNCSLNIFDKLN---- 765
              E  ++K++RH N +  +   + ++        +  +  + +    L   +KL     
Sbjct: 64  AYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRI 123

Query: 766 --IMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGDRSMIQ------TETLV 817
             ++  +   L Y+H +    +IH DLKP N+       L   D  + +      T  +V
Sbjct: 124 QFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVV 180

Query: 818 TIGYMAPGLL 827
           T  Y AP ++
Sbjct: 181 TRWYRAPEVI 190

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 7e-18
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 30/190 (15%)

Query: 665 FSYQDL----FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCA--MALKS 717
           F  Q+L    +   E++   + +G G++GSV        G+ VA+K   +     +  K 
Sbjct: 4   FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKR 63

Query: 718 FEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL--------------HSTNCSLNIFDK 763
              E  ++K+++H N +  +   +                              L     
Sbjct: 64  TYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHV 123

Query: 764 LNIMIDVASALEYLHFSHSTPVIHCDLKPKNVFDFGIGRLLTGDR------SMIQTETLV 817
             ++  +   L+Y+   HS  +IH DLKP N+       L   D           T  + 
Sbjct: 124 QFLIYQILRGLKYI---HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVA 180

Query: 818 TIGYMAPGLL 827
           T  Y AP ++
Sbjct: 181 TRWYRAPEIM 190

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 1e-17
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 49/199 (24%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNCAMA-LKSFEAECEVMKN 727
           ++      +G G+FG V +              VA+K+  +    +  ++  +E +++ +
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 728 IRHRNHVKRISSCSNEDFKAL-------------DCLHSTNCS---------------LN 759
           I H  +V  +     +    L               L S                   L 
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 132

Query: 760 IFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS 809
           +   +     VA  +E+L    S   IH DL  +N+           DFG+ R +  D  
Sbjct: 133 LEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 810 MIQTETLV-TIGYMAPGLL 827
            ++       + +MAP  +
Sbjct: 190 YVRKGDARLPLKWMAPETI 208

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 2e-17
 Identities = 31/178 (17%), Positives = 59/178 (33%), Gaps = 29/178 (16%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAM---ALKSFEAECEVM-KNIR 729
           E F    ++G GSFG V+           AIK   ++  +    ++    E  V+     
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 730 HRNHVKRISSCSNEDFKALDCLHSTNCSL----------NIFDKLNIMIDVASALEYLHF 779
           H        +   ++       +     L          ++        ++   L++LH 
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS 121

Query: 780 SHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
                +++ DLK  N+           DFG+ +      +   T    T  Y+AP +L
Sbjct: 122 KG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNT-FCGTPDYIAPEIL 175

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-17
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 46/194 (23%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHDG---IEVAIKVFHQNCAM-ALKSFEAECEVMKNI-R 729
                +++IG G+FG V K R+      ++ AIK   +  +    + F  E EV+  +  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 730 HRNHVKRISSCSNEDF--------------------------KALDCLHSTNCSLNIFDK 763
           H N +  + +C +  +                           A    +ST  +L+    
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 764 LNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT 813
           L+   DVA  ++YL        IH DL  +N+           DFG+ R          T
Sbjct: 130 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK--T 184

Query: 814 ETLVTIGYMAPGLL 827
              + + +MA   L
Sbjct: 185 MGRLPVRWMAIESL 198

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-17
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 26/175 (14%)

Query: 675 EKFSKENLIGVGSFGSVYKGRL----HDGIEVAIKVFHQ----NCAMALKSFEAECEVMK 726
           E F    ++G G++G V+  R       G   A+KV  +      A   +    E +V++
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 727 NIRHRNHVKRI-SSCSNEDFKALDCLHSTNCSL-------NIFDKLNIMIDVASALEYLH 778
           +IR    +  +  +   E    L   +     L         F +  + I V   +  L 
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALE 143

Query: 779 FSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMA 823
             H   +I+ D+K +N+           DFG+ +    D +    +   TI YMA
Sbjct: 144 HLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMA 198

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 80.9 bits (199), Expect = 2e-17
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 36/181 (19%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH---------QNCAMALKSFEAECEV 724
           E +  + ++G G    V +        E A+K+           +      ++   E ++
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 725 MKNIR-HRNHVKRISSCSNEDF----------KALDCLHSTNCSLNIFDKLNIMIDVASA 773
           ++ +  H N ++   +     F            L    +   +L+  +   IM  +   
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV 122

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMA 823
           +  L   H   ++H DLKP+N+           DFG    L     +   E   T  Y+A
Sbjct: 123 ICAL---HKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKL--REVCGTPSYLA 177

Query: 824 P 824
           P
Sbjct: 178 P 178

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 2e-17
 Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 31/187 (16%)

Query: 672 RATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFH--QNCAMALKSFEAECEVMKNI 728
               K+ K   IG G+FG V+K R    G +VA+K             +   E ++++ +
Sbjct: 7   DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 66

Query: 729 RHRNHVKRISSCSNEDFKALDC---------------LHSTNCSLNIFDKLNIMIDVASA 773
           +H N V  I  C  +      C                   +  L  F    I   +   
Sbjct: 67  KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 126

Query: 774 LEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS---MIQTETLVTIG 820
           L  L++ H   ++H D+K  NV           DFG+ R  +  ++      T  +VT+ 
Sbjct: 127 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 186

Query: 821 YMAPGLL 827
           Y  P LL
Sbjct: 187 YRPPELL 193

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 3e-17
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 37/183 (20%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMA------LKSFEAECEVMKNI 728
           ++    L+G G FGSVY G  + D + VAIK   ++                E  ++K +
Sbjct: 5   QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 64

Query: 729 R--HRNHVKRISSCSNEDFKA-----------LDCLHSTNCSLNIFDKLNIMIDVASALE 775
                  ++ +      D              L    +   +L      +    V  A+ 
Sbjct: 65  SSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVR 124

Query: 776 YLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           +    H+  V+H D+K +N+            DFG G LL        T+   T  Y  P
Sbjct: 125 HC---HNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV---YTDFDGTRVYSPP 178

Query: 825 GLL 827
             +
Sbjct: 179 EWI 181

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (201), Expect = 4e-17
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 30/170 (17%)

Query: 675 EKFSKENLIGVGSFGSVYKGRLHD-GIEVAIKVFH------QNCAMALKSFEAECEVMKN 727
             FS   +IG G FG VY  R  D G   A+K         +       +      ++  
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 728 IRHRNHVKRISSCSNED--FKALDCLHSTNCSLNIFDK--------LNIMIDVASALEYL 777
                 V    +    D     LD ++  +   ++                ++   LE++
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM 123

Query: 778 HFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLV 817
              H+  V++ DLKP N+           D G+    +  +      T  
Sbjct: 124 ---HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHG 170

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 9e-17
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 50/200 (25%)

Query: 675 EKFSKENLIGVGSFGSVYKGRL--------HDGIEVAIKVFHQNCAM-ALKSFEAECEVM 725
           ++      +G G+FG V             +   +VA+K+   +     L    +E E+M
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 726 KNI-RHRNHVKRISSCSNEDFKAL--------------------------DCLHSTNCSL 758
           K I +H+N +  + +C+ +    +                          +  H+    L
Sbjct: 73  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 132

Query: 759 NIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKN----------VFDFGIGRLLTGDR 808
           +  D ++    VA  +EYL    S   IH DL  +N          + DFG+ R +    
Sbjct: 133 SSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189

Query: 809 SMIQTET-LVTIGYMAPGLL 827
              +T    + + +MAP  L
Sbjct: 190 YYKKTTNGRLPVKWMAPEAL 209

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 76.7 bits (188), Expect = 1e-16
 Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 31/149 (20%)

Query: 681 NLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCA------------------MALKSFEAEC 722
            L+G G   +V+        E  +K                         +A++S   E 
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 723 EVMKNIRHRNHVKRISSCSNEDFKALDCLHSTNCSLNIFDKLNIMIDVASALEYLHFSHS 782
             ++ ++     K  +   N     L           + +   ++  +   +      + 
Sbjct: 66  RALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRV-RVENPDEVLDMILEEVAKF---YH 121

Query: 783 TPVIHCDLKPKNVF---------DFGIGR 802
             ++H DL   NV          DF    
Sbjct: 122 RGIVHGDLSQYNVLVSEEGIWIIDFPQSV 150

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (196), Expect = 2e-16
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 675 EKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALK---SFEAECEVMKNIRH 730
           ++F +   +G GSFG V   +    G   A+K+  +   + LK       E  +++ +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 731 RNHVKRISSCSNEDFKA----------LDCLHSTNCSLNIFDKLNIMIDVASALEYLHFS 780
              VK   S  +               +          +          +    EYLH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158

Query: 781 HSTPVIHCDLKPKNVF 796
            S  +I+ DLKP+N+ 
Sbjct: 159 -SLDLIYRDLKPENLL 173

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 2e-16
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 31/180 (17%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCA--MALKSFEAECEVMKN 727
           F   +++     IG G+ G V           VAIK   +        K    E  +MK 
Sbjct: 13  FTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC 72

Query: 728 IRHRNHVKRISSCSNED-------------FKALDCLHSTNCSLNIFDKLNIMIDVASAL 774
           + H+N +  ++  + +                  +        L+      ++  +   +
Sbjct: 73  VNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGI 132

Query: 775 EYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
           ++L   HS  +IH DLKP N+           DFG+ R       M  T  +VT  Y AP
Sbjct: 133 KHL---HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM--TPYVVTRYYRAP 187

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 5e-16
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 41/179 (22%)

Query: 680 ENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRI 737
             ++G+G  G V +        + A+K+              E E+     +  + V+ +
Sbjct: 17  SQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIV 71

Query: 738 SSCSNEDFKA---------------LDCLHS-TNCSLNIFDKLNIMIDVASALEYLHFSH 781
               N                       +    + +    +   IM  +  A++YLH   
Sbjct: 72  DVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH--- 128

Query: 782 STPVIHCDLKPKNVF-------------DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL 827
           S  + H D+KP+N+              DFG  +  T   S+       T  Y+AP +L
Sbjct: 129 SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY--TPYYVAPEVL 185

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 76.8 bits (188), Expect = 1e-15
 Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 30/176 (17%)

Query: 671 FRATEKFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR 729
           +   + +     +G G +  V++   + +  +V +K+         K  + E ++++N+R
Sbjct: 31  WGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLR 87

Query: 730 -HRNHVKRISSCSNEDFKALDC---------LHSTNCSLNIFDKLNIMIDVASALEYLHF 779
              N +       +   +                   +L  +D    M ++  AL+Y H 
Sbjct: 88  GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHS 147

Query: 780 SHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQTETLVTIGYMAP 824
                ++H D+KP NV            D+G+       +       + +  +  P
Sbjct: 148 MG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY--NVRVASRYFKGP 198

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 7e-15
 Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 40/262 (15%)

Query: 377 NLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLP 436
           +L      + + N  I         NL NL  L L  NK++   P  F  L KL+ LYL 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 437 FNKLAGSIPDQLCH------------------------LARLNTLGLAGNKFSGSIPSCL 472
            N+L   +P+++                             +  LG    K SG      
Sbjct: 88  KNQL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 473 GNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLS 532
             +  L    +    +T++      +L ++    L  N +    +  +  L  +  + LS
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 533 RNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG--YLTELNLSFNKLEGEIPRGGP 590
            N+ S     ++ +   L+ + L  N L  +        Y+  + L  N +         
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-------- 255

Query: 591 FANFTAKSFMGNEKLCGLPNLQ 612
                +  F          +  
Sbjct: 256 --AIGSNDFCPPGYNTKKASYS 275

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 27/279 (9%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---------LTGNP 366
           P+   L+L  N+ +        N   L  L +  N  S I P             L+ N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 367 LDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEG--NKLTGSIPVTF 424
           L  +       +  +L+ + +    I      + + L+ +++++L     K +G     F
Sbjct: 91  LKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 425 GRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLG 484
             ++KL  + +    +  +IP  L     L  L L GNK +    + L  L +L    L 
Sbjct: 147 QGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 485 SNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG------ 538
            N +++V   +  N   +    L++N L       + + + +  + L  NN S       
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 539 DIPSTIGDLKDLQNISLACNGLE--GLIPESFGYLTELN 575
             P           +SL  N ++   + P +F  +    
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 55/291 (18%), Positives = 102/291 (35%), Gaps = 24/291 (8%)

Query: 86  CNWIGITCNVNSHR---------VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSG 136
           C+   + C+                 L++ +  +         NL +L TL L +NK+S 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 137 DIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHY 196
             P +   + KL+ L  S NQL      +   L  +     +  K+   +          
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF--NGLNQMI 127

Query: 197 LKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLR 256
           +  L        G    A    K+L  + +    ++        +LT L    L  NK+ 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKIT 184

Query: 257 GEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLP 316
                 +  L NL  L L FN++  V   ++ N   +++++L +N L      G      
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHK 242

Query: 317 NVERLNLGLNRFSG------TIPSFITNASKLVYLDMGTN--SFSGIIPNT 359
            ++ + L  N  S         P + T  +    + + +N   +  I P+T
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.9 bits (180), Expect = 1e-14
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 30/148 (20%)

Query: 676 KFSKENLIGVGSFGSVYKGR-LHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHV 734
           ++     +G G F +V+  + + +   VA+K+   +  +  ++ E E ++++ +   ++ 
Sbjct: 14  RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNT 72

Query: 735 KRISSCSNEDFKALDC--------------------------LHSTNCSLNIFDKLNIMI 768
           K  S  +N   K LD                               +  + +     I  
Sbjct: 73  KEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISK 132

Query: 769 DVASALEYLHFSHSTPVIHCDLKPKNVF 796
            +   L+Y+H      +IH D+KP+NV 
Sbjct: 133 QLLLGLDYMHRRCG--IIHTDIKPENVL 158

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 9e-09
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 8/207 (3%)

Query: 238 EISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIY 297
           E+S +    +++     L   +P ++    +   L L  N L     A +   + + ++ 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 298 LLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTN----SFS 353
           L    L      G    L  ++  +  L        +        V  +  T+    +  
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 354 GIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEG 413
           G+               LP  +   +  LE + ++N N+      L++ L NL  L L+ 
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 414 NKLTGSIPVTFGRLQKLQGLYLPFNKL 440
           N L  +IP  F     L   +L  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 47/209 (22%), Positives = 74/209 (35%), Gaps = 8/209 (3%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
                  +N    NL   +PP L      T L+LS N L      ++    +L  L+   
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 156 NQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLAL 215
            +L+      T  +   LD+  +  +    L   +           ++ N        AL
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL----DVSFNRLTSLPLGAL 120

Query: 216 SKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG 275
                LQ L L   +L    P  ++    L K+SL NN L       +  L NL+ L+L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLL 304
            N+L   +P   F    +   +L  N  L
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 8/203 (3%)

Query: 381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKL 440
           S   +     N+  ++P  +    +  +L L  N L      T     +L  L L   + 
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 441 AGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLK 500
             +       L  L TL L+ N+           L +L   D+  NRLTS+       L 
Sbjct: 67  -LTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 501 DILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGL 560
           ++    L  N L       +     +  ++L+ NN +      +  L++L  + L  N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 561 EGLIPESFG--YLTELNLSFNKL 581
             +    FG   L    L  N  
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 6/178 (3%)

Query: 316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGII-----PNTIGLTGNPLDGV 370
            +   L+L  N       + +   ++L  L++     + +      P    L  +     
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 371 LPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKL 430
               +G    +L  + +S   +       +  L  L  L L+GN+L    P       KL
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 431 QGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRL 488
           + L L  N L       L  L  L+TL L  N    +IP        L    L  N  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 86  CNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTM 145
              +       + ++  L++++ NL       L  L +L TL L  N L   IP   F  
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 146 HKLKFLDFSDNQL 158
           H L F     N  
Sbjct: 195 HLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 16/209 (7%)

Query: 168 NLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLG 227
            ++S L++  D   L+  LP ++        +L L++N+ +      L    RL  LNL 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 228 FKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAI 287
             +L+         +     +S    +    +   +  L  L+       +L    P   
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL----PLGA 119

Query: 288 FNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDM 347
                  +   L  + L +   G+    P +E+L+L  N  +      +     L  L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 348 GTNSFSGIIPN--------TIGLTGNPLD 368
             NS   I              L GNP  
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 386 YISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIP 445
                     I  L     +L  L++  NKL   +P    RL++   L   FN L   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHL-AEVP 320

Query: 446 DQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLR 479
           +   +L +L+   +  N      P    ++  LR
Sbjct: 321 ELPQNLKQLH---VEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 52/334 (15%), Positives = 96/334 (28%), Gaps = 25/334 (7%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
              L +++L L  ++P    +L    +L  S N L+ ++P        LK L   +N L 
Sbjct: 40  AHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK 91

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCK 219
                   +L  +L+    S+    +LP    +    +  +          +P +L    
Sbjct: 92  A-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 220 RLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNL 279
                     +L                  L +  L  E       +      +     L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 280 VGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNA 339
             +        +       L+   +    L     LP               +     N 
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266

Query: 340 SKLVYLDMGTNSFSGIIPN--TIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIP 397
             L        S   + P+   + ++ N L   LP     L    E +  S  ++   +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL----ERLIASFNHLA-EVP 320

Query: 398 QLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQ 431
           +L  NL  L    +E N L    P     ++ L+
Sbjct: 321 ELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 86  CNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTM 145
            +    +       +  LN+S+  L   +P     L     L  S N L+ ++P      
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELP--- 323

Query: 146 HKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDS 179
             LK L    N     L        SV D+R++S
Sbjct: 324 QNLKQLHVEYNP----LREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 462 NKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIG 521
           N  S  I S      SL   ++ +N+L   LP+    L+ +     S N L   +     
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLAE-VPELPQ 324

Query: 522 NLRVVIGINLSRNNFSGDIPSTIGDLKDLQ 551
           NL+    +++  N      P     ++DL+
Sbjct: 325 NLKQ---LHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 86  CNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTM 145
              +          +             I        SL  LN+S+NKL  ++P      
Sbjct: 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP--- 303

Query: 146 HKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKV 199
            +L+ L  S N L+  +  +  NL     + ++ + L  E P    + +  L++
Sbjct: 304 PRLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPES-VEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 25/94 (26%)

Query: 315 LPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTS 374
            P++E LN+  N+    +P+       L  L    N                        
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL--------------------AE 318

Query: 375 IGNLSMSLENIYISNCNIGGSIPQLISNLSNLLL 408
           +  L  +L+ +++    +    P +  ++ +L +
Sbjct: 319 VPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 34/219 (15%), Positives = 81/219 (36%), Gaps = 15/219 (6%)

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN 278
                +  G   ++  + +  ++L  +  +S     +       + YL NL  L L  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN 338
           +       +  +  + KI  L+ S     ++     L +++ L+L   + +   P    +
Sbjct: 75  ITD-----LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 339 ASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLS--MSLENIYISNCNIGGSI 396
             +++YLD+   +    +     L    +     + +  L+    L  +   +  I    
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 397 PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL 435
           P  +++L NL+ + L+ N+++   P        L  + L
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 11/219 (5%)

Query: 241 NLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLD 300
            L    KI+   + +   +      L  +  L      +  +    +  ++ +  + L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 301 NSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTI 360
           N +     L    +L  +  L L  N            + K + L     +    +    
Sbjct: 73  NQITDLAPLK---NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 361 GLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSI 420
            L    LD    T+I  L+      Y+S  N   S    ++NLS L  L  + NK++   
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 421 PVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL 459
           P     L  L  ++L  N+++   P  L + + L  + L
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 21/212 (9%)

Query: 100 VTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS 159
              +     N+  T+     +L  +TTL+     ++  I   +  ++ L  L+  DNQ++
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQIT 76

Query: 160 GSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAK-------------NM 206
                      + L++  +  K    +          L    +                +
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 207 FHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYL 266
              QI           L  L       +    ++NL+ L  +   +NK+    P  +  L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 267 PNLENLVLGFNNLVGVVPAAIFNMSTVKKIYL 298
           PNL  + L  N +  V P  + N S +  + L
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 86  CNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTM 145
                +T   N  ++T L      +    P  L +L +L  ++L +N++S   P  +   
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216

Query: 146 HKLKFLDFSD 155
             L  +  ++
Sbjct: 217 SNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 71  PTNLLAQNSTSNTSVCNWIGITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLS 130
           P   LA          N        +   +T L+     +  TI   +  L++L  L L 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELK 71

Query: 131 HNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNI 190
            N+++   P    T      L  +  +   +++ +    +  L     +D        N+
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 191 CNYLHYLKVLFLAKNMFHGQI-------------PLALSKCKRLQLLNLGFKKLSGAIPK 237
                 L  +     +                     L+   +L  L     K+S   P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 238 EISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVL 274
            +++L  L ++ L+NN++    P  +    NL  + L
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 12/126 (9%)

Query: 385 IYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSI 444
           +++++ ++  ++   +  L  +  LDL  N+L    P     L+ L+ L    N L    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 445 PDQLCHLARLNTLGLAGNKF-SGSIPSCLGNLTSLRSPDLGSNRLTSV------LPSTFW 497
                   +   L L  N+    +    L +   L   +L  N L         L     
Sbjct: 60  GVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 498 NLKDIL 503
           ++  IL
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 126 TLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGE 185
            L+L+H  L+  +   +  +  +  LD S N+L     +    L+++  + +     +  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNAL 55

Query: 186 LPVNICNYLHYLKVLFLAKNMF-HGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTI 244
             V+    L  L+ L L  N          L  C RL LLNL    L          L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 245 L 245
           +
Sbjct: 115 M 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVG 281
           ++L+L  K L+  +   +  L ++  + L +N+LR   P  +  L  LE  VL  ++   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNAL 55

Query: 282 VVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASK 341
                + N+  ++++ L +N L  S ++   +S P +  LNL  N             ++
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 342 LV 343
           ++
Sbjct: 115 ML 116

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 6/168 (3%)

Query: 395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTF-GRLQKLQGLYLPFNKLAGSIPDQLCHLAR 453
            IP+ I    +   L L  N+L         GRL  L  L L  N+L G  P+     + 
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 454 LNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLD 513
           +  L L  NK           L  L++ +L  N+++ V+P +F +L  +   +L+SN  +
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 514 GPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGD--LKDLQNISLACNG 559
               L       +   +L+        PS + D  +KDL +    C+ 
Sbjct: 140 CNCHLA-WFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSS 186

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 7/184 (3%)

Query: 246 RKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLG 305
             +      L+ EIP +I    +   L+L  N L  +    +F          L  + L 
Sbjct: 11  TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 306 SFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG---- 361
                      +++ L LG N+             +L  L++  N  S ++P +      
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 362 LTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIP 421
           LT   L         +L+   E +   + N G +     S + ++ + DL  ++   S  
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 422 VTFG 425
            + G
Sbjct: 188 NSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 384 NIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGS 443
            + +    I     ++   L  L  L+L  N+++  +P +F  L  L  L L  +     
Sbjct: 82  ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL-ASNPFNC 140

Query: 444 IPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPST 495
                     L    L G       PS + ++      DL  +       ++
Sbjct: 141 NCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIK---DLPHSEFKCSSENS 189

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 10/138 (7%)

Query: 116 PQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQL-----SGSLSSVTFNLS 170
            Q  N      L+L   K+   I     T+ +   +DFSDN++        L  +   L 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 70

Query: 171 SVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKK 230
           +   I    + L   LP      L    ++ L            L     L +L      
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS----LKSLTYLCILRNPVTN 126

Query: 231 LSGAIPKEISNLTILRKI 248
                   I  +  +R +
Sbjct: 127 KKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 401 SNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA 460
           +N      LDL G K+   I      L +   +    N++     D    L RL TL + 
Sbjct: 15  TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVN 71

Query: 461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFW 497
            N+           L  L    L +N L  +      
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL 108

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 379 SMSLENIYISNCNIGGS-IPQLISNLSNLLLLDLEGNKLTG----SIPVTFGRLQKLQGL 433
           S+ ++++ I    +  +   +L+  L    ++ L+   LT      I         L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 434 YLPFNKLAGSIPDQLCHLARLNTLGL 459
            L  N+L       +    +  +  +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 10/69 (14%)

Query: 103 LNISSLNLQGT------IPPQLGNLSSLTTLNLSHNKLSGD----IPPSIFTMHKLKFLD 152
           L+I SL++Q            L  L     + L    L+      I  ++     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 153 FSDNQLSGS 161
              N+L   
Sbjct: 62  LRSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 380 MSLENIYISNCNIGG----SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQK-----L 430
             L  +++++C++      S+   +    +L  LDL  N L  +  +      +     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 431 QGLYLPFNKLAGSIPDQLCHLARLN 455
           + L L     +  + D+L  L +  
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 9/84 (10%)

Query: 86  CNWIGITCNVNSHRVTALNISSLNLQGT----IPPQLGNLSSLTTLNLSHNKLSGDIPPS 141
              +          +  L ++  ++  +    +   L    SL  L+LS+N L       
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 142 IFT-----MHKLKFLDFSDNQLSG 160
           +          L+ L   D   S 
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 221 LQLLNLGFKKLSGAIPKEI-SNLTILRKISLRNNKLRGE----IPHEIGYLPNLENLVLG 275
           +Q L++  ++LS A   E+   L   + + L +  L       I   +   P L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 276 FNNLVGVVPAAIFNMSTVKKIYLLDNSL 303
            N L  V    +          +   SL
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 4/96 (4%)

Query: 359 TIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGG----SIPQLISNLSNLLLLDLEGN 414
           ++ +    L       +  L    + + + +C +       I   +     L  L+L  N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 415 KLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCH 450
           +L         +  +     +    L          
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 401 SNLSNLLLLDLEGNKLTG----SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLC-----HL 451
              S L +L L    ++     S+  T      L+ L L  N L  +   QL        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 452 ARLNTLGLAGNKFSGSIPSCLGNL 475
             L  L L    +S  +   L  L
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 120 NLSSLTTLNLSHNKLSGD----IPPSIFTMHKLKFLDFSDNQLSGS-----LSSVTFNLS 170
             S L  L L+   +S      +  ++   H L+ LD S+N L  +     + SV     
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 171 SVLDIRLDSDKLSGELP 187
            +  + L     S E+ 
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 166 TFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQ----IPLALSKCKRL 221
           + ++ S LD  +  ++LS      +   L   +V+ L            I  AL     L
Sbjct: 1   SLDIQS-LD--IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPH 261
             LNL   +L       +          ++   L+     
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 430 LQGLYLPFNKLAGSIPDQLC-HLARLNTLGLAGNKFSG----SIPSCLGNLTSLRSPDLG 484
           +Q L +   +L+ +   +L   L +   + L     +      I S L    +L   +L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 485 SNRLTS 490
           SN L  
Sbjct: 64  SNELGD 69

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 15/209 (7%)

Query: 259 IPHEIGYL---PNLENLV---LGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGID 312
           +P  I  +         +   L   ++   V      ++++ +I   ++ +     +   
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 313 LSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLP 372
             LPNV +L L  N+ +   P         ++LD         + +   L    L+    
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 373 TSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQG 432
           + I  L    +   +   N   +   ++S L+ L  L LE N+++  +P     L KLQ 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182

Query: 433 LYLPFNKLAGSIPDQLCHLARLNTLGLAG 461
           LYL  N +  S    L  L  L+ L L  
Sbjct: 183 LYLSKNHI--SDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 9/193 (4%)

Query: 219 KRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNN 278
                 NL  K ++ A+ +  + L  + +I   N+ ++      I YLPN+  L L  N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 279 LVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN 338
           L  + P A         +       L S      L   ++E   +        +P   + 
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 339 ASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQ 398
                 +   T        +T+ L  N +  ++P  +  L+  L+N+Y+S  +I   +  
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHI-SDLRA 195

Query: 399 LISNLSNLLLLDL 411
           L + L NL +L+L
Sbjct: 196 L-AGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 23/191 (12%)

Query: 99  RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQL 158
                N+   ++   +      L+S+  +  +++ +       I  +  +  L  + N+L
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 159 SG---------------SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLA 203
           +                  + V    S     +L S  L      +I   +H  ++  L 
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

Query: 204 KNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI 263
                      LS+  +L  L+L   ++S  +P  ++ LT L+ + L  N +       +
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRAL 196

Query: 264 GYLPNLENLVL 274
             L NL+ L L
Sbjct: 197 AGLKNLDVLEL 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 125 TTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSG 184
            TL+L+   L  D+   + +   +       + +   L+   F+   V  + L +  +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 60

Query: 185 ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLN 225
                I +    L+ L L        I   L+K   L  LN
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 34/259 (13%), Positives = 86/259 (33%), Gaps = 15/259 (5%)

Query: 90  GITCNVNSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFT-MHKL 148
            +T  + S  V A       +   +         +  ++LS++ +       I +   KL
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKL 73

Query: 149 KFLDFSDNQLSGSLSSVTFNLSSVLDIRLDS----DKLSGELPVNICNYLHYLKVLFLAK 204
           + L     +LS  + +     S+++ + L       + + +  ++ C+ L  L + +   
Sbjct: 74  QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133

Query: 205 NMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKI----SLRNNKLRGEIP 260
                         + +  LNL   + +       + +     +       +  L+ +  
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193

Query: 261 HEIGYLPNLENLVL-GFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVE 319
            E   L  L++L L    +++      +  + T+K + +      G     + L    + 
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG----TLQLLKEALP 249

Query: 320 RLNLGLNRFSGTIPSFITN 338
            L +  + F+      I N
Sbjct: 250 HLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 33/277 (11%), Positives = 82/277 (29%), Gaps = 27/277 (9%)

Query: 320 RLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIG--------LTGNPLDGVL 371
            L+L        +   +  +  ++      +     +             L+ + ++   
Sbjct: 4   TLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 372 PTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQ 431
              I +    L+N+ +    +   I   ++  SNL+ L+                L    
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN----------------LSGCS 106

Query: 432 GLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSV 491
           G      +   S   +L  L               ++      +T L       N   S 
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 492 LPSTFWNLKDILFFDLSSNSL-DGPLSLDIGNLRVVIGINLSR-NNFSGDIPSTIGDLKD 549
           L +      +++  DLS + +       +   L  +  ++LSR  +   +    +G++  
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 550 LQNISLACNGLEGLIPESFGYLTELNLSFNKLEGEIP 586
           L+ + +     +G +      L  L ++ +       
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR 263

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 10/60 (16%), Positives = 19/60 (31%)

Query: 380 MSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNK 439
              E     N N+      +    S  ++LD+   ++          L+KL+       K
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 86  CNWIGITCNVNSHRVTALNISSLNLQGTIPPQ-LGNLSSLTTLNLSHNKLSGDIPPSIFT 144
                  C  N  ++  LN+S  N    +P       S    L++S  ++   +P     
Sbjct: 164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLE 222

Query: 145 -MHKLKFLDFSDNQ 157
            + KL+     + +
Sbjct: 223 NLKKLRARSTYNLK 236

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 23/192 (11%)

Query: 96  NSHRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSD 155
                    +   N+  T+     +L  +TTL      +   I   +  ++ L  ++FS+
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSN 71

Query: 156 NQLSG--SLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYL-------------HYLKVL 200
           NQL+    L ++T  +  +++    +D        N+                 +   + 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 201 FLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIP 260
            L  +        ALS    LQ LN    +++   P  ++NLT L ++ + +NK+     
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--I 187

Query: 261 HEIGYLPNLENL 272
             +  L NLE+L
Sbjct: 188 SVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 25/181 (13%)

Query: 98  HRVTALNISSLNLQGTIPP------QLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFL 151
             V A     + L G IPP       L  L +   L LS N +   I      +  ++ L
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS----LSGMENL 72

Query: 152 DFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQI 211
                  +        +  +     L            I   ++   +      + +   
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 212 PLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLEN 271
              L+   +L+ L L    L     +              NN         +  LPNL+ 
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKE--------------NNATSEYRIEVVKRLPNLKK 178

Query: 272 L 272
           L
Sbjct: 179 L 179

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 47/334 (14%), Positives = 94/334 (28%), Gaps = 24/334 (7%)

Query: 103 LNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGD----IPPSIFTMHKLKFLDFSDNQL 158
           L+  +   + ++   L    S+  + LS N +  +    +  +I +   L+  +FSD   
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 159 SGSLSSVTFNLSSVLDIRLDSDKLS--GELPVNICNYLHYLKVLFLAKNMFHGQIPLALS 216
                 +   L  +L   L   KL                  + FL+K+     + L  +
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 217 KCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGF 276
                    +       A+ K+  N   LR I    N+L      E              
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-------S 184

Query: 277 NNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFI 336
           + L+  V      +      +LL   L     L +     N                   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 337 TNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSI 396
                L    +     + ++     L    L           ++ L+   I    +    
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGL----------QTLRLQYNEIELDAVRTLK 294

Query: 397 PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKL 430
             +   + +LL L+L GN+           ++++
Sbjct: 295 TVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 378 LSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG--SIPVTFGRLQKLQGLYL 435
           ++ +++ +     ++  ++  +  N+  LL L+L  N+L     +     +   L+ L L
Sbjct: 39  VAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 98

Query: 436 PFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRS 480
             N+L            +L  L L GN  S +       ++++R 
Sbjct: 99  SGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	827
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.93
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.93
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.93
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.93
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.92
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.92
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.92
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.92
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.92
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.92
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.92
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.92
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.91
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.91
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.91
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.91
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.91
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.91
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.9
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.9
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.9
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.9
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.9
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.9
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.9
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.9
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.89
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.89
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.89
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.89
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.89
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.89
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.88
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.88
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.88
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.88
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.88
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.88
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.88
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.87
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.87
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.86
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.86
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.86
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.86
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.86
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.86
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.86
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.85
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.85
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.85
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.85
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.81
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.77
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	94.74
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	91.65
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	86.44
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	82.57

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.7e-43  Score=375.50  Aligned_cols=293  Identities=27%  Similarity=0.461  Sum_probs=207.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCCcCCCCCCCCCCCC--cccceecCCCC--CcEEEEEcCCCCCcc--ccCccccCCCCC
Q 047196           51 SNITTDQQALLALKAHISYDPTNLLAQNSTSNTSVC--NWIGITCNVNS--HRVTALNISSLNLQG--TIPPQLGNLSSL  124 (827)
Q Consensus        51 ~~~~~~~~aLl~~k~~~~~~~~~~l~~w~~~~~~~C--~W~gv~C~~~~--~~v~~L~L~~~~l~g--~~~~~l~~L~~L  124 (827)
                      -|.++||+||++||+++. ||. .+++|+ .++|||  .|.||+|+..+  +||+.|||+++++.|  .+|+++++|++|
T Consensus         2 ~c~~~e~~aLl~~k~~~~-~~~-~l~sW~-~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L   78 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG-NPT-TLSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTTCC-TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHHCC-CCC-cCCCCC-CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccc
Confidence            388999999999999994 553 688897 678999  49999998754  489999999999998  578999999999


Q ss_pred             CEEECCC-CCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEee
Q 047196          125 TTLNLSH-NKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLA  203 (827)
Q Consensus       125 ~~L~Ls~-N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls  203 (827)
                      ++|||++ |+++|.+|++|+++++|++|||++|++.+..+..+..+..|+.++++.|.+.+.+|..+.++. .|++++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~-~L~~l~l~  157 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc-ccceeecc
Confidence            9999997 899999999999999999999999999988877777777777777777766666666655433 66666666


Q ss_pred             cccccccCCccCCCCCCC-cEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCccc
Q 047196          204 KNMFHGQIPLALSKCKRL-QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGV  282 (827)
Q Consensus       204 ~N~l~~~~p~~l~~l~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  282 (827)
                      +|.++|.+|..+..+..+ +.++++.|++++..|..+.++..+ .++++++.+.+.+|..++.+++|+.+++++|.+++.
T Consensus       158 ~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            666666666666665554 566666666666666666555433 466666666666666666666666666666666654


Q ss_pred             CchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCc
Q 047196          283 VPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNS  351 (827)
Q Consensus       283 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  351 (827)
                      +| .+..+++++.|++++|+++|.+|..+. .+++|++|+|++|+++|.+|. ++++++|+.+++++|+
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~-~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cc-ccccccccccccCccCeecccCChHHh-CCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            43 344555555555555555555555443 455555555555555555553 3444555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=7.8e-33  Score=295.50  Aligned_cols=257  Identities=34%  Similarity=0.618  Sum_probs=206.1

Q ss_pred             CCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccC-CcCccccCccccCCCCCceEeccCcccccc
Q 047196          341 KLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISN-CNIGGSIPQLISNLSNLLLLDLEGNKLTGS  419 (827)
Q Consensus       341 ~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~  419 (827)
                      +++.|+|++|.++|..             .+|..+++++ +|++|+|++ |+++|.+|..|+++++|++|+|++|++.+.
T Consensus        51 ~v~~L~L~~~~l~g~~-------------~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~  116 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPY-------------PIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             CEEEEEEECCCCSSCE-------------ECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred             EEEEEECCCCCCCCCC-------------CCChHHhcCc-cccccccccccccccccccccccccccchhhhcccccccc
Confidence            4566666666555421             2455666665 677777775 677778888888888888888888888888


Q ss_pred             ccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCC-CccccCCCcccccCCccccc
Q 047196          420 IPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSL-RSPDLGSNRLTSVLPSTFWN  498 (827)
Q Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~  498 (827)
                      .|..+..+.+|+.+++++|.+.+.+|..+.+++.|+.+++++|++++.+|..+..+..+ +.+++++|++++..|..+..
T Consensus       117 ~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~  196 (313)
T d1ogqa_         117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             ccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence            88888888888888888888888888888888888888888888888888888777775 77888888888888887777


Q ss_pred             cccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCCCcceeecCCCCc---CCceEe
Q 047196          499 LKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLACNGLEGLIPESFG---YLTELN  575 (827)
Q Consensus       499 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~L~~L~  575 (827)
                      +..+ .+++++|...|.+|..++.++.++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.++   +|++||
T Consensus       197 l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~  274 (313)
T d1ogqa_         197 LNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             CCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred             cccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEE
Confidence            6554 68888888888888888888888888888888887765 578888888888888888888888764   688889


Q ss_pred             CcCCcCeecCCCCCCCCCCcccccccCccccCCCCCCCccc
Q 047196          576 LSFNKLEGEIPRGGPFANFTAKSFMGNEKLCGLPNLQFPKC  616 (827)
Q Consensus       576 ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p~~~~~~c  616 (827)
                      |++|+|+|.||..+.++.+....+.||+.+||.|   .|.|
T Consensus       275 Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~p---lp~c  312 (313)
T d1ogqa_         275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP---LPAC  312 (313)
T ss_dssp             CCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT---SSCC
T ss_pred             CcCCcccccCCCcccCCCCCHHHhCCCccccCCC---CCCC
Confidence            9999999999988888888889999999999965   3567

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.7e-27  Score=261.13  Aligned_cols=207  Identities=26%  Similarity=0.360  Sum_probs=137.0

Q ss_pred             ccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccC
Q 047196          318 VERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIP  397 (827)
Q Consensus       318 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p  397 (827)
                      ........|...  ....+..++++..+++++|.+++..|.                 ... .+|++|++++|+++. + 
T Consensus       177 ~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~~-----------------~~~-~~L~~L~l~~n~l~~-~-  234 (384)
T d2omza2         177 LERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITPL-----------------GIL-TNLDELSLNGNQLKD-I-  234 (384)
T ss_dssp             CCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGGG-----------------GGC-TTCCEEECCSSCCCC-C-
T ss_pred             cccccccccccc--cccccccccccceeeccCCccCCCCcc-----------------ccc-CCCCEEECCCCCCCC-c-
Confidence            334444444432  234455666777777777766644321                 111 267777777777764 2 


Q ss_pred             ccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCC
Q 047196          398 QLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTS  477 (827)
Q Consensus       398 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  477 (827)
                      ..+..+++|+.|++++|++++..+  +..+++|+.|++++|++++..  .+..+..++.+++++|++++  +..+..+++
T Consensus       235 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~  308 (384)
T d2omza2         235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKN  308 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTT
T ss_pred             chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcc
Confidence            356677778888888887776543  667777888888887777543  25567777777787777764  234667777


Q ss_pred             CCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEECCC
Q 047196          478 LRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNISLAC  557 (827)
Q Consensus       478 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~  557 (827)
                      ++.|++++|++++..|  +..+++|+.|++++|++++ ++ .++++++|++|++++|+|++.+|  +.++++|+.|+|++
T Consensus       309 l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~  382 (384)
T d2omza2         309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  382 (384)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCC
T ss_pred             cCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCC
Confidence            7777787777776533  6677777777777777765 33 46777777777777777776554  67777777777777


Q ss_pred             C
Q 047196          558 N  558 (827)
Q Consensus       558 N  558 (827)
                      |
T Consensus       383 N  383 (384)
T d2omza2         383 Q  383 (384)
T ss_dssp             E
T ss_pred             C
Confidence            6

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=7.3e-27  Score=255.95  Aligned_cols=340  Identities=25%  Similarity=0.353  Sum_probs=195.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEc
Q 047196           98 HRVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRL  177 (827)
Q Consensus        98 ~~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  177 (827)
                      ..++.|++++++++..  +.+..|++|++|||++|+|++. | .++++++|++|++++|++.+..+  +..+++|+.|++
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccccc--cccccccccccc
Confidence            4689999999998753  4688899999999999999864 3 39999999999999999987543  788999999999


Q ss_pred             CCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccc
Q 047196          178 DSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRG  257 (827)
Q Consensus       178 ~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (827)
                      +.+.+++..+..   ....+..+....|.+....+..................+     ..+...+.........|... 
T Consensus       118 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-  188 (384)
T d2omza2         118 FNNQITDIDPLK---NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPLANLTTLERLDISSNKVS-  188 (384)
T ss_dssp             CSSCCCCCGGGT---TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGGTTCTTCCEEECCSSCCC-
T ss_pred             cccccccccccc---ccccccccccccccccccccccccccccccccccccchh-----hhhccccccccccccccccc-
Confidence            999888644322   223677778887777654443333333333333322222     22334444455555555443 


Q ss_pred             cccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCcccc
Q 047196          258 EIPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFIT  337 (827)
Q Consensus       258 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (827)
                       .+..+..+++++.+++++|.+++..|  +..+.+|++|++++|.+... + .+ ..+++|+.|++++|++++..+  +.
T Consensus       189 -~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~-~-~l-~~l~~L~~L~l~~n~l~~~~~--~~  260 (384)
T d2omza2         189 -DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G-TL-ASLTNLTDLDLANNQISNLAP--LS  260 (384)
T ss_dssp             -CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G-GG-GGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             -cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc-c-hh-hcccccchhccccCccCCCCc--cc
Confidence             34455667777777777777766543  23445555555555554431 1 11 134555555555555554322  44


Q ss_pred             CCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcccc
Q 047196          338 NASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLT  417 (827)
Q Consensus       338 ~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  417 (827)
                      .+++|+.|++++|++                                        ++..  .+..++.++.++++.|+++
T Consensus       261 ~~~~L~~L~l~~~~l----------------------------------------~~~~--~~~~~~~l~~l~~~~n~l~  298 (384)
T d2omza2         261 GLTKLTELKLGANQI----------------------------------------SNIS--PLAGLTALTNLELNENQLE  298 (384)
T ss_dssp             TCTTCSEEECCSSCC----------------------------------------CCCG--GGTTCTTCSEEECCSSCCS
T ss_pred             ccccCCEeeccCccc----------------------------------------CCCC--ccccccccccccccccccc
Confidence            445555555555444                                        3321  1334444445555555444


Q ss_pred             ccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCcccc
Q 047196          418 GSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFW  497 (827)
Q Consensus       418 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  497 (827)
                      +.  ..+..+++++.|++++|++++..  .+..+++|+.|++++|++++ +| .+.++++|++|++++|++++..|  +.
T Consensus       299 ~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~  370 (384)
T d2omza2         299 DI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LA  370 (384)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GT
T ss_pred             cc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hc
Confidence            32  12444455555555555554332  14445555555555555542 22 34555555555555555554433  45


Q ss_pred             ccccccccCCCCC
Q 047196          498 NLKDILFFDLSSN  510 (827)
Q Consensus       498 ~l~~L~~LdLs~N  510 (827)
                      ++++|+.|+|++|
T Consensus       371 ~l~~L~~L~L~~N  383 (384)
T d2omza2         371 NLTRITQLGLNDQ  383 (384)
T ss_dssp             TCTTCSEEECCCE
T ss_pred             cCCCCCEeeCCCC
Confidence            5555555555554

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.7e-27  Score=242.58  Aligned_cols=150  Identities=25%  Similarity=0.466  Sum_probs=121.1

Q ss_pred             hhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l~  752 (827)
                      .++|+..+.||+|+||.||+|++++++.||||+++... ...++|.+|++++++++|||||+++|+|.++... ++++..
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~   90 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYME   90 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCT
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCC
Confidence            35788889999999999999999888999999997543 2346799999999999999999999998765532 333333


Q ss_pred             cC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .+          ...+++.++..|+.|||+||+|||   +++|+||||||+|||          |||+|+.+........
T Consensus        91 ~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~  167 (272)
T d1qpca_          91 NGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR  167 (272)
T ss_dssp             TCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECC
T ss_pred             CCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccchhheeeecccceeeccccceEEccCCccccc
Confidence            21          124788889999999999999996   568999999999998          9999998765443333


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....||++|||||++
T Consensus       168 ~~~~gt~~y~APE~~  182 (272)
T d1qpca_         168 EGAKFPIKWTAPEAI  182 (272)
T ss_dssp             TTCCCCTTTSCHHHH
T ss_pred             cccCCcccccChHHH
Confidence            445689999999974

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-26  Score=238.44  Aligned_cols=151  Identities=22%  Similarity=0.351  Sum_probs=119.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--e
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      .++|+..+.||+|+||+||+|+.+ +|+.||||++.... ....+++.+|++++++++|||||++++++.+++..++  +
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            357889999999999999999864 69999999997543 2334679999999999999999999999988876544  3


Q ss_pred             eecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-
Q 047196          750 CLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-  810 (827)
Q Consensus       750 ~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-  810 (827)
                      +...        ....+++.+...++.|+++||+|||   +++|+||||||+|||          |||+|+.+...... 
T Consensus        84 y~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~  160 (271)
T d1nvra_          84 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER  160 (271)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEEC
T ss_pred             ccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccc
Confidence            3221        1245778888899999999999996   568999999999998          99999987544322 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                      ..+..+||+.|||||++
T Consensus       161 ~~~~~~GT~~Y~APE~~  177 (271)
T d1nvra_         161 LLNKMCGTLPYVAPELL  177 (271)
T ss_dssp             CBCCCCSCGGGSCTHHH
T ss_pred             cccceeeCcCccCHhHh
Confidence            23345699999999974

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-26  Score=241.14  Aligned_cols=148  Identities=27%  Similarity=0.493  Sum_probs=113.9

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l  751 (827)
                      ++|...+.||+|+||+||+|++++  .||||+++..  .....++|.+|++++++++|||||++++++.++... +++++
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~   85 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWC   85 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred             ccEEEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecC
Confidence            568888999999999999998753  5999998643  344567899999999999999999999998765532 23332


Q ss_pred             c---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc-c
Q 047196          752 H---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM-I  811 (827)
Q Consensus       752 ~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~-~  811 (827)
                      .         .....+++.++..|+.|+|+||+|||   +++||||||||+|||          |||+|+........ .
T Consensus        86 ~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~  162 (276)
T d1uwha_          86 EGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ  162 (276)
T ss_dssp             CEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTSSEEECCCCCSCC---------
T ss_pred             CCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHh---cCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCccc
Confidence            2         22346889999999999999999996   568999999999998          99999877543322 2


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....||+.|||||++
T Consensus       163 ~~~~~gt~~y~APE~l  178 (276)
T d1uwha_         163 FEQLSGSILWMAPEVI  178 (276)
T ss_dssp             ---CCCCGGGCCHHHH
T ss_pred             ccccccCcccCCHHHH
Confidence            2334589999999973

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.1e-27  Score=240.89  Aligned_cols=149  Identities=27%  Similarity=0.421  Sum_probs=110.3

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~  752 (827)
                      .+|+..+.||+|+||.||+|++.+++.||||+++... ...++|.+|++++++++|||||+++|+|..++..++  ++..
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence            4677889999999999999999888899999997543 234679999999999999999999999987665444  3322


Q ss_pred             c---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 S---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 ~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      .         ....+.+..+..|+.|+|+||+|||   +++|+||||||+|||          |||+|+...........
T Consensus        84 ~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~  160 (263)
T d1sm2a_          84 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST  160 (263)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCSGGGEEECGGGCEEECSCC--------------
T ss_pred             CCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhh---ccceeecccchhheeecCCCCeEecccchheeccCCCceeec
Confidence            1         2245678888999999999999996   567999999999998          99999887554433333


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...||+.|||||++
T Consensus       161 ~~~gt~~y~aPE~l  174 (263)
T d1sm2a_         161 GTKFPVKWASPEVF  174 (263)
T ss_dssp             ----CTTSCCHHHH
T ss_pred             ceecCcccCChHHh
Confidence            34589999999974

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=7.7e-27  Score=244.32  Aligned_cols=151  Identities=29%  Similarity=0.513  Sum_probs=122.2

Q ss_pred             HhhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--e
Q 047196          673 ATEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--D  749 (827)
Q Consensus       673 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~  749 (827)
                      ..++|+..+.||+|+||+||+|++. +|+.||||+++... ...++|.+|++++++++|||||+++++|.+++..++  +
T Consensus        15 ~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E   93 (287)
T d1opja_          15 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   93 (287)
T ss_dssp             CGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEee
Confidence            3457888899999999999999875 58999999987543 235679999999999999999999999988765544  3


Q ss_pred             eecc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      +...          ....+++..+..|+.|+|+||+|||   +++|+||||||+|||          |||+|+....+..
T Consensus        94 ~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~  170 (287)
T d1opja_          94 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  170 (287)
T ss_dssp             CCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSS
T ss_pred             cccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHH---HCCcccCccccCeEEECCCCcEEEccccceeecCCCCc
Confidence            3221          1235678888999999999999996   468999999999999          9999998765544


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ...+...||+.|||||++
T Consensus       171 ~~~~~~~g~~~y~aPE~~  188 (287)
T d1opja_         171 TAHAGAKFPIKWTAPESL  188 (287)
T ss_dssp             EEETTEEECGGGCCHHHH
T ss_pred             eeeccccccccccChHHH
Confidence            434445589999999974

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.9e-26  Score=238.22  Aligned_cols=149  Identities=27%  Similarity=0.327  Sum_probs=121.4

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~~  753 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++........+.+.+|++++++++|||||++++++..++..++...+.
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            4689999999999999999986 469999999997654444577999999999999999999999998887655533332


Q ss_pred             CC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccccc
Q 047196          754 TN---------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQTE  814 (827)
Q Consensus       754 ~~---------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~~  814 (827)
                      ..         ..++..+...++.|++.||+|||   +++|+||||||+|||          |||+|+.+..+... ...
T Consensus       100 ~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~-~~~  175 (293)
T d1yhwa1         100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RST  175 (293)
T ss_dssp             TTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC-BCC
T ss_pred             CCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCcHHHeEECCCCcEeeccchhheeecccccc-ccc
Confidence            22         34667778899999999999996   578999999999998          99999987544332 234


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      .+||+.|||||++
T Consensus       176 ~~gt~~Y~aPE~~  188 (293)
T d1yhwa1         176 MVGTPYWMAPEVV  188 (293)
T ss_dssp             CCSCGGGCCHHHH
T ss_pred             cccCCCccChhhh
Confidence            5699999999974

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.9e-24  Score=226.56  Aligned_cols=244  Identities=26%  Similarity=0.332  Sum_probs=128.8

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      .++++|=+++.++ .+|..+.  +++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4566666666666 4565553  567777777777776555567777777777777777776666677777777777777


Q ss_pred             cccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccc--cccCccccCCCCCcEEEcCCCcce
Q 047196          276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFS--GTIPSFITNASKLVYLDMGTNSFS  353 (827)
Q Consensus       276 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~  353 (827)
                      +|+++.. |..+  ...++.|++.+|.+.+. +...+.....++.++...|...  ...+..+..+++            
T Consensus        88 ~n~l~~l-~~~~--~~~l~~L~~~~n~l~~l-~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~------------  151 (305)
T d1xkua_          88 KNQLKEL-PEKM--PKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK------------  151 (305)
T ss_dssp             SSCCSBC-CSSC--CTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT------------
T ss_pred             CCccCcC-ccch--hhhhhhhhccccchhhh-hhhhhhccccccccccccccccccCCCccccccccc------------
Confidence            7777643 3222  23445555555544332 2222223333444444443221  122233333444            


Q ss_pred             eecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEE
Q 047196          354 GIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGL  433 (827)
Q Consensus       354 g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  433 (827)
                                                  |+.+++++|+++. +|..+  +++|+.|++++|..++..+..|.+++.+++|
T Consensus       152 ----------------------------L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L  200 (305)
T d1xkua_         152 ----------------------------LSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL  200 (305)
T ss_dssp             ----------------------------CCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             ----------------------------cCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhcccccccc
Confidence                                        4444444444432 22221  3445555555555554445555555555555


Q ss_pred             ECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccc
Q 047196          434 YLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS  490 (827)
Q Consensus       434 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  490 (827)
                      ++++|.+.+..+..+.++++|++|+|++|+++ .+|.++..+++|++|+|++|+|+.
T Consensus       201 ~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             ccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            55555555444445555555555555555554 344455555555555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.5e-24  Score=226.09  Aligned_cols=255  Identities=21%  Similarity=0.215  Sum_probs=181.2

Q ss_pred             CcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccccccc
Q 047196          185 ELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIG  264 (827)
Q Consensus       185 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  264 (827)
                      ++|.++.   +++++|+|++|+++...+.+|.++++|++|++++|.++...|..|.++++|++|++++|+++ .+|..+ 
T Consensus        24 ~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~-   98 (305)
T d1xkua_          24 KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-   98 (305)
T ss_dssp             SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC-
T ss_pred             ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch-
Confidence            5665543   47899999999998766678999999999999999999888888999999999999999998 456543 


Q ss_pred             CcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccc-cChhhhcCCCCccEEeCcCCccccccCccccCCCCCc
Q 047196          265 YLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGS-FSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLV  343 (827)
Q Consensus       265 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  343 (827)
                       ...++.|+++.|.+.+..+..+.....+..++...|..... ........+++|+.+++++|+++. +|..+  .+   
T Consensus        99 -~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~---  171 (305)
T d1xkua_          99 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PP---  171 (305)
T ss_dssp             -CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CT---
T ss_pred             -hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CC---
Confidence             46789999999999988777788888888888888754322 222233468899999999998763 33221  23   


Q ss_pred             EEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCcccccccccc
Q 047196          344 YLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVT  423 (827)
Q Consensus       344 ~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~  423 (827)
                                                           +++.|++++|..++..+..|..++.++.|++++|.+++..+..
T Consensus       172 -------------------------------------~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~  214 (305)
T d1xkua_         172 -------------------------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS  214 (305)
T ss_dssp             -------------------------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             -------------------------------------ccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc
Confidence                                                 4555666666666666666666667777777777777666666


Q ss_pred             ccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCcc------ccCCCCCCccccCCCccc
Q 047196          424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSC------LGNLTSLRSPDLGSNRLT  489 (827)
Q Consensus       424 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------~~~l~~L~~L~Ls~N~l~  489 (827)
                      +.++++|++|+|++|+|+ .+|.++.++++|++|+|++|+++..-...      ...+.+|+.|+|++|.+.
T Consensus       215 ~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            667777777777777776 45666777777777777777776322222      223455666666666553

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-26  Score=237.83  Aligned_cols=150  Identities=24%  Similarity=0.476  Sum_probs=111.3

Q ss_pred             hcccccceEecCCceEEEEEEecC-C----cEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-G----IEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g----~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      ..|+..++||+|+||.||+|+++. +    ..||||++.... .....+|.+|++++++++|||||+++|+|.+.+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            468888999999999999998753 2    479999996543 3445679999999999999999999999987665443


Q ss_pred             --eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          749 --DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       749 --~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                        +++.         .....+++.++..++.|+|+|++|||   +++|+||||||+|||          |||+|+.+...
T Consensus        87 v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~  163 (283)
T d1mqba_          87 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  163 (283)
T ss_dssp             EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred             EEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhcc---ccccccCccccceEEECCCCeEEEcccchhhcccCC
Confidence              2221         12346889999999999999999996   578999999999998          99999987544


Q ss_pred             Cccc--cccceecccccccccC
Q 047196          808 RSMI--QTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~--~~~~~gt~~Y~APE~l  827 (827)
                      ....  .....||+.|||||++
T Consensus       164 ~~~~~~~~~~~gt~~Y~APE~l  185 (283)
T d1mqba_         164 PEATYTTSGGKIPIRWTAPEAI  185 (283)
T ss_dssp             ----------CCCGGGSCHHHH
T ss_pred             CccceEeccCCCCccccCHHHH
Confidence            3221  2223489999999963

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1e-25  Score=237.83  Aligned_cols=145  Identities=27%  Similarity=0.356  Sum_probs=118.7

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD-  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~-  749 (827)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++....   ....+.|.+|++++++++|||||++++++.+++..++. 
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            4588899999999999999986 578999999997543   33456799999999999999999999999887755543 


Q ss_pred             -eecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          750 -CLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       750 -~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                       +...        ....+++.+...++.|+++||.|||   +++|+||||||+|||          |||+|+.....   
T Consensus        95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~---  168 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA---  168 (309)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB---
T ss_pred             EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEECCCCCEEEeecccccccCCC---
Confidence             3221        2345788889999999999999996   568999999999998          99999865432   


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ...+||++|||||++
T Consensus       169 --~~~~GT~~Y~APE~~  183 (309)
T d1u5ra_         169 --NSFVGTPYWMAPEVI  183 (309)
T ss_dssp             --CCCCSCGGGCCHHHH
T ss_pred             --CccccCccccCHHHH
Confidence              234699999999973

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=5.8e-26  Score=239.05  Aligned_cols=161  Identities=25%  Similarity=0.481  Sum_probs=113.4

Q ss_pred             ccchhHHHHHhhccc---------ccceEecCCceEEEEEEec-CC---cEEEEEEEccc-chHHHHHHHHHHHHHHhcC
Q 047196          664 RFSYQDLFRATEKFS---------KENLIGVGSFGSVYKGRLH-DG---IEVAIKVFHQN-CAMALKSFEAECEVMKNIR  729 (827)
Q Consensus       664 ~~~~~~~~~~~~~~~---------~~~~iG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~  729 (827)
                      .++++|+.+++.+|.         ..++||+|+||+||+|+++ +|   ..||||++... .....++|.+|+++|++++
T Consensus         6 ~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~   85 (299)
T d1jpaa_           6 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD   85 (299)
T ss_dssp             GGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC
Confidence            456777777766554         4578999999999999864 23   36899998654 3445678999999999999


Q ss_pred             CCCceEEEeeeecCCceee--eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          730 HRNHVKRISSCSNEDFKAL--DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       730 H~niv~~~~~~~~~~~~~l--~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                      |||||+++|+|..++..++  +++..         ....+++.++..|+.|+|+||+|||   +++|+||||||+|||  
T Consensus        86 HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlKp~NILl~  162 (299)
T d1jpaa_          86 HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVN  162 (299)
T ss_dssp             CTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEC
T ss_pred             CCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHh---hCCCccCccccceEEEC
Confidence            9999999999987665444  33221         2345789999999999999999996   568999999999999  


Q ss_pred             --------eecccccccCCCccc----cccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSMI----QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~~----~~~~~gt~~Y~APE~l  827 (827)
                              |||+|+.+.......    .....||+.|||||++
T Consensus       163 ~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  205 (299)
T d1jpaa_         163 SNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAI  205 (299)
T ss_dssp             TTCCEEECCC-----------------------CGGGSCHHHH
T ss_pred             CCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHH
Confidence                    999999875443221    1123479999999963

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-25  Score=230.44  Aligned_cols=147  Identities=27%  Similarity=0.403  Sum_probs=119.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||+||+|+.+ +|+.||||++....   ....+.+.+|++++++++|||||++++++.+++..++..
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            57888999999999999999875 68999999986432   223467899999999999999999999998887655433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+++.+...++.|+++||+|||   +++|+||||||+|||          |||+|+....... 
T Consensus        86 Ey~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~-  161 (263)
T d2j4za1          86 EYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR-  161 (263)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCC-
T ss_pred             eecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeeccccceecCCCCEeecccceeeecCCCcc-
Confidence            3322          235677788899999999999996   578999999999998          9999987654322 


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ...+||+.|||||++
T Consensus       162 --~~~~Gt~~Y~APE~~  176 (263)
T d2j4za1         162 --TTLCGTLDYLPPEMI  176 (263)
T ss_dssp             --EETTEEGGGCCHHHH
T ss_pred             --cccCCCCcccCHHHH
Confidence              234599999999974

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9e-26  Score=232.13  Aligned_cols=149  Identities=25%  Similarity=0.440  Sum_probs=121.3

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l~  752 (827)
                      ++|+..+.||+|+||+||+|++++++.||||+++.... ..++|.+|++++++++|||||+++|+|.+.+..++  ++..
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence            46888899999999999999998888999999976433 34679999999999999999999999987665443  3222


Q ss_pred             ---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          753 ---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       753 ---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                               .....+.+..+.+++.|+|+||+|||   +++|+||||||+||+          |||+|+...........
T Consensus        83 ~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~  159 (258)
T d1k2pa_          83 NGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV  159 (258)
T ss_dssp             TEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCC
T ss_pred             CCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHh---hcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeec
Confidence                     12345678889999999999999996   468999999999998          99999877554433333


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...||+.|||||++
T Consensus       160 ~~~~t~~y~aPE~~  173 (258)
T d1k2pa_         160 GSKFPVRWSPPEVL  173 (258)
T ss_dssp             CSCCCGGGCCHHHH
T ss_pred             ccCCCCCcCCcHHh
Confidence            45589999999974

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.6e-26  Score=238.97  Aligned_cols=149  Identities=25%  Similarity=0.348  Sum_probs=120.3

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l  751 (827)
                      +.|+..+.||+|+||+||+|+.. +|+.||||+++.......++|.+|++++++++|||||++++++.+++..++  +++
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            45788899999999999999864 689999999977655566789999999999999999999999988775544  332


Q ss_pred             cc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          752 HS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       752 ~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      ..         ....+++.+...++.|+++||+|||   +++|+||||||+|||          |||+|+....... ..
T Consensus        92 ~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~-~~  167 (288)
T d2jfla1          92 AGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ-RR  167 (288)
T ss_dssp             TTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHH-HH
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecChhheeECCCCCEEEEechhhhccCCCcc-cc
Confidence            21         1235778888999999999999996   568999999999998          9999976543221 12


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ...+||+.|||||++
T Consensus       168 ~~~~Gt~~y~APE~l  182 (288)
T d2jfla1         168 DSFIGTPYWMAPEVV  182 (288)
T ss_dssp             TCCCSCCTTCCHHHH
T ss_pred             cccccccccCCHHHH
Confidence            235699999999973

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-25  Score=231.72  Aligned_cols=152  Identities=27%  Similarity=0.395  Sum_probs=108.9

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC----cee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNED----FKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~----~~~  747 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++....  ....+.|.+|++++++++|||||++++++.+..    +..
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            6799999999999999999986 469999999996542  344577999999999999999999999986532    223


Q ss_pred             eeeeccC------------CCCCCHHHHHHHHHHHHHHHHHHHhcC--CCCeEEccCCCccee----------eeccccc
Q 047196          748 LDCLHST------------NCSLNIFDKLNIMIDVASALEYLHFSH--STPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       748 l~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h--~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      +++...+            ...+++.....++.|+++||+|||...  ..+|+||||||+|||          |||+|+.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            4443321            234777888899999999999999754  356999999999998          9999998


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +..+... ....+||++|||||++
T Consensus       164 ~~~~~~~-~~~~~gt~~Y~APE~l  186 (269)
T d2java1         164 LNHDTSF-AKAFVGTPYYMSPEQM  186 (269)
T ss_dssp             C------------CCCSCCCHHHH
T ss_pred             cccCCCc-cccCCCCcccCCHHHH
Confidence            7544332 2335699999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-24  Score=226.51  Aligned_cols=223  Identities=20%  Similarity=0.208  Sum_probs=141.0

Q ss_pred             EcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCC
Q 047196          104 NISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLS  183 (827)
Q Consensus       104 ~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~  183 (827)
                      +.++.+++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++||+++|++.+..+..+.++..+..++...+...
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            44555666 4565543  57899999999999777778999999999999999998777766666666666655433332


Q ss_pred             CCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccc
Q 047196          184 GELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEI  263 (827)
Q Consensus       184 g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  263 (827)
                      ..++                        |..|.++++|++|++++|.+....+..+..+++|+.+++++|++++..+..|
T Consensus        94 ~~l~------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f  149 (284)
T d1ozna_          94 RSVD------------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF  149 (284)
T ss_dssp             CCCC------------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccc------------------------chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh
Confidence            2333                        4444455555555555555544444444455555555555555554444445


Q ss_pred             cCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCc
Q 047196          264 GYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLV  343 (827)
Q Consensus       264 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  343 (827)
                      ..+++|++|++++|++++..+..|.++++|+.+++++|.+.+..|..+. .+++|++|++++|++.+..|..|.++++|+
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhh-hhhhcccccccccccccccccccccccccC
Confidence            5555555555555555555455555555555555555555544443333 566777777777777777777788888888


Q ss_pred             EEEcCCCccee
Q 047196          344 YLDMGTNSFSG  354 (827)
Q Consensus       344 ~L~Ls~N~l~g  354 (827)
                      +|++++|.+..
T Consensus       229 ~L~l~~N~l~C  239 (284)
T d1ozna_         229 YLRLNDNPWVC  239 (284)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEecCCCCCC
Confidence            88888887764

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.9e-26  Score=241.91  Aligned_cols=149  Identities=23%  Similarity=0.289  Sum_probs=119.5

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .++|+..+.||+|+||+||+|+. .+|+.||||+++.. .....+++.+|+++|++++|||||++++++.+++..++...
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            46799999999999999999986 46899999999754 23345689999999999999999999999988876554333


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      +..          ...+++.....++.|+++||.|||+.  .+|+||||||+|||          |||+|+.+....   
T Consensus        85 y~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~---  159 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM---  159 (322)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT---
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc---
Confidence            222          23577778889999999999999853  36999999999999          999999765332   


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      ....+||++|||||++
T Consensus       160 ~~~~~GT~~Y~APEvl  175 (322)
T d1s9ja_         160 ANSFVGTRSYMSPERL  175 (322)
T ss_dssp             C---CCSSCCCCHHHH
T ss_pred             cccccCCccccCchHH
Confidence            2335799999999974

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.92  E-value=2.4e-25  Score=239.01  Aligned_cols=149  Identities=21%  Similarity=0.310  Sum_probs=122.8

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++........+.+.+|++++++++|||||++++++.+++..++...+
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35799999999999999999986 46999999999776666667899999999999999999999999887765543222


Q ss_pred             c-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCc
Q 047196          753 S-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRS  809 (827)
Q Consensus       753 ~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~  809 (827)
                      .           ....+++.....|+.|++.||+|||   +.+||||||||+|||            |||+|+.+.....
T Consensus       105 ~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~  181 (350)
T d1koaa2         105 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS  181 (350)
T ss_dssp             CCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSC
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheecccccc
Confidence            1           2235778888999999999999996   578999999999997            9999987754433


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      .  ....||+.|||||++
T Consensus       182 ~--~~~~gT~~Y~aPEv~  197 (350)
T d1koaa2         182 V--KVTTGTAEFAAPEVA  197 (350)
T ss_dssp             E--EEECSCTTTCCHHHH
T ss_pred             c--ceecCcccccCHHHH
Confidence            2  334599999999974

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.6e-25  Score=232.29  Aligned_cols=150  Identities=28%  Similarity=0.392  Sum_probs=117.1

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++....   ....+.+.+|++++++++|||||++++++.+++..++..
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5799999999999999999986 469999999996432   223467999999999999999999999998877555433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+++.....++.|++.||+|||   +++|+||||||+||+          |||+|+.+......
T Consensus        88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~  164 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ  164 (288)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             EccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCCccccccCCCceEEecccccceecccCCcc
Confidence            2222          235677778889999999999995   678999999999998          99999987543322


Q ss_pred             -ccccceecccccccccC
Q 047196          811 -IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 -~~~~~~gt~~Y~APE~l  827 (827)
                       .....+||+.|||||++
T Consensus       165 ~~~~~~~GT~~Y~APE~~  182 (288)
T d1uu3a_         165 ARANSFVGTAQYVSPELL  182 (288)
T ss_dssp             -----CCCCGGGCCHHHH
T ss_pred             cccccccCCccccCceee
Confidence             22335699999999974

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.5e-25  Score=230.24  Aligned_cols=150  Identities=24%  Similarity=0.463  Sum_probs=116.8

Q ss_pred             hcccccce-EecCCceEEEEEEec---CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-ee
Q 047196          675 EKFSKENL-IGVGSFGSVYKGRLH---DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-AL  748 (827)
Q Consensus       675 ~~~~~~~~-iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l  748 (827)
                      ++|...+. ||+|+||+||+|.++   ++..||||+++... ....++|.+|++++++++|||||+++|+|..+... ++
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvm   87 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM   87 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEE
Confidence            34555564 999999999999764   35689999997543 44567899999999999999999999999765532 23


Q ss_pred             eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          749 DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 ~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      +++.         .....+++.++..++.|+|+||+|||   +++|+||||||+||+          |||+|+.+.....
T Consensus        88 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  164 (285)
T d1u59a_          88 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  164 (285)
T ss_dssp             ECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             EeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCchhheeeccCCceeeccchhhhccccccc
Confidence            3322         12345788899999999999999996   578999999999998          9999998755433


Q ss_pred             cc--cccceecccccccccC
Q 047196          810 MI--QTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~--~~~~~gt~~Y~APE~l  827 (827)
                      ..  .....||+.|||||++
T Consensus       165 ~~~~~~~~~gt~~y~aPE~~  184 (285)
T d1u59a_         165 YYTARSAGKWPLKWYAPECI  184 (285)
T ss_dssp             EECCCCSSCCCGGGCCHHHH
T ss_pred             ccccccccccCccccChHHH
Confidence            21  2234589999999974

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-25  Score=233.95  Aligned_cols=149  Identities=26%  Similarity=0.450  Sum_probs=113.6

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee-eeeecc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA-LDCLHS  753 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~-l~~l~~  753 (827)
                      ++|+..+.||+|+||.||+|++++++.||||++.... ...+.|.+|++++++++|||||+++|+|.+++..+ +++...
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~   95 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSK   95 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTT
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCC
Confidence            5788899999999999999999888889999996543 23467999999999999999999999997655332 233222


Q ss_pred             C----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccccc
Q 047196          754 T----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQT  813 (827)
Q Consensus       754 ~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~~  813 (827)
                      +          ...++|.++..|+.+||+||+|||   +.+|+||||||+|||          |||+|+.+........+
T Consensus        96 g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~  172 (285)
T d1fmka3          96 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ  172 (285)
T ss_dssp             CBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC-----------
T ss_pred             CchhhhhhhcccccchHHHHHHHHHHHHHHHHHHh---hhheecccccceEEEECCCCcEEEcccchhhhccCCCceeec
Confidence            1          134789999999999999999996   568999999999998          99999887544433334


Q ss_pred             cceecccccccccC
Q 047196          814 ETLVTIGYMAPGLL  827 (827)
Q Consensus       814 ~~~gt~~Y~APE~l  827 (827)
                      ...||+.|||||++
T Consensus       173 ~~~gt~~y~aPE~~  186 (285)
T d1fmka3         173 GAKFPIKWTAPEAA  186 (285)
T ss_dssp             ---CCGGGSCHHHH
T ss_pred             cccccccccChHHH
Confidence            45589999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=228.18  Aligned_cols=251  Identities=25%  Similarity=0.259  Sum_probs=177.3

Q ss_pred             CCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEc-cCCcCcc
Q 047196          316 PNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYI-SNCNIGG  394 (827)
Q Consensus       316 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~L-s~N~l~g  394 (827)
                      +++++|+|++|+|+...+..|.++++|++|++++|++.+..+..+               .... .++.++. ..|.++.
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~---------------~~~~-~~~~l~~~~~~~~~~   95 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF---------------TGLA-LLEQLDLSDNAQLRS   95 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT---------------TTCT-TCCEEECCSCTTCCC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccc---------------cccc-ccccccccccccccc
Confidence            457788888888887666778888888888888888776544321               1122 4555554 3555666


Q ss_pred             ccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccC
Q 047196          395 SIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGN  474 (827)
Q Consensus       395 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  474 (827)
                      ..|..|.++++|++|++++|.+.+..+..+..+.+|+.+++++|++++..+..|..++.|+.|++++|++++..|..|.+
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence            66777788888888888888877766777777788888888888887666667777777888888888887777777777


Q ss_pred             CCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecccccccCCCCCCEEE
Q 047196          475 LTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDIPSTIGDLKDLQNIS  554 (827)
Q Consensus       475 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~  554 (827)
                      +++|+++++++|++++..|..|.++++|++||+++|.+++..|..++.+.+|+.|++++|.+.+.-+.. .-...++.+.
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~  254 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFR  254 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCC
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCc
Confidence            888888888888888777777777778888888888887777777777777777777777777654321 1112244455


Q ss_pred             CCCCcceeecCCCCcCCceEeCcCCcCee
Q 047196          555 LACNGLEGLIPESFGYLTELNLSFNKLEG  583 (827)
Q Consensus       555 Ls~N~l~g~ip~~~~~L~~L~ls~N~l~g  583 (827)
                      ...+++....|..+......+++.++|+|
T Consensus       255 ~~~~~~~C~~p~~l~g~~l~~l~~~~l~g  283 (284)
T d1ozna_         255 GSSSEVPCSLPQRLAGRDLKRLAANDLQG  283 (284)
T ss_dssp             SEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred             CCCCceEeCCchHHcCCccccCCHHHCCC
Confidence            55566666667666666666666666665

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=225.65  Aligned_cols=146  Identities=27%  Similarity=0.390  Sum_probs=112.6

Q ss_pred             cccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecC----C--ceee
Q 047196          678 SKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNE----D--FKAL  748 (827)
Q Consensus       678 ~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~----~--~~~l  748 (827)
                      +..++||+|+||+||+|+.. +++.||||++...  .....+.|.+|++++++++|||||++++++...    .  +..+
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            44567999999999999865 6899999998653  234457899999999999999999999998642    1  2233


Q ss_pred             eeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCc
Q 047196          749 DCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 ~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~  809 (827)
                      +++...        ...+++.....++.|+++||+|||. +.++|+||||||+|||           |||+|+.......
T Consensus        92 E~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~-~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~  170 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA  170 (270)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT-SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSB
T ss_pred             eCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHH-CCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCcc
Confidence            433321        2356777788899999999999973 3345999999999998           9999986543322


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                         ...+||+.|||||++
T Consensus       171 ---~~~~GT~~Y~aPE~~  185 (270)
T d1t4ha_         171 ---KAVIGTPEFMAPEMY  185 (270)
T ss_dssp             ---EESCSSCCCCCGGGG
T ss_pred             ---CCcccCccccCHHHh
Confidence               235699999999974

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.9e-25  Score=230.03  Aligned_cols=144  Identities=25%  Similarity=0.434  Sum_probs=110.6

Q ss_pred             ceEecCCceEEEEEEec---CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce-eeeeecc-
Q 047196          681 NLIGVGSFGSVYKGRLH---DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK-ALDCLHS-  753 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~-~l~~l~~-  753 (827)
                      ++||+|+||+||+|.++   .++.||||+++..  .....++|.+|++++++++|||||+++|+|..+... ++++... 
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g   92 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG   92 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCC
Confidence            57999999999999864   3578999999643  233457899999999999999999999999765532 2333322 


Q ss_pred             -------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc--ccc
Q 047196          754 -------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI--QTE  814 (827)
Q Consensus       754 -------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~--~~~  814 (827)
                             ....+++.++..|+.|||+||+|||   +++|+||||||+|||          |||+|+.+.......  ...
T Consensus        93 ~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~  169 (277)
T d1xbba_          93 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTH  169 (277)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC---
T ss_pred             cHHHHHhhccCCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccc
Confidence                   1345788899999999999999996   568999999999998          999999875443322  222


Q ss_pred             ceecccccccccC
Q 047196          815 TLVTIGYMAPGLL  827 (827)
Q Consensus       815 ~~gt~~Y~APE~l  827 (827)
                      ..||++|||||++
T Consensus       170 ~~gt~~y~APE~l  182 (277)
T d1xbba_         170 GKWPVKWYAPECI  182 (277)
T ss_dssp             -CCCGGGCCHHHH
T ss_pred             cCCCceecCchhh
Confidence            3489999999963

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.2e-25  Score=235.73  Aligned_cols=150  Identities=27%  Similarity=0.450  Sum_probs=113.4

Q ss_pred             hcccccceEecCCceEEEEEEec-CCc----EEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGI----EVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l  748 (827)
                      .+|+..++||+|+||+||+|++. +|+    .||||++... .....++|.+|++++++++|||||+++|+|.+++...+
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v   88 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   88 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEE
Confidence            35889999999999999999864 443    5899988643 23446789999999999999999999999988765433


Q ss_pred             -eeec---------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          749 -DCLH---------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       749 -~~l~---------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                       +++.         .....+++..+..++.|||+||+|||   +++|+||||||+|||          |||+|+......
T Consensus        89 ~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH---~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~  165 (317)
T d1xkka_          89 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  165 (317)
T ss_dssp             EECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTC
T ss_pred             EEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHH---HcCcccCcchhhcceeCCCCCeEeeccccceeccccc
Confidence             2111         12345778889999999999999996   468999999999998          999999875543


Q ss_pred             ccc-cccceecccccccccC
Q 047196          809 SMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ... .....||+.|||||++
T Consensus       166 ~~~~~~~~~gt~~y~APE~l  185 (317)
T d1xkka_         166 KEYHAEGGKVPIKWMALESI  185 (317)
T ss_dssp             C--------CCTTTSCHHHH
T ss_pred             ccccccccccCccccChHHH
Confidence            322 2223489999999974

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.3e-24  Score=230.27  Aligned_cols=146  Identities=25%  Similarity=0.303  Sum_probs=118.0

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+.++++++|||||++++++.+++..++..
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5788899999999999999986 469999999996532   223567999999999999999999999998887655533


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...+.......++.|++.|++|||   +++|+||||||+|||          |||+|+......  
T Consensus        84 E~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~--  158 (316)
T d1fota_          84 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT--  158 (316)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB--
T ss_pred             eecCCccccccccccccccccHHHHHHHHHHHhhhhhc---cCcEEccccCchheeEcCCCCEEEecCccceEecccc--
Confidence            3322          233456666779999999999995   778999999999998          999998765332  


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ...+||+.|||||++
T Consensus       159 --~~~~Gt~~Y~APE~l  173 (316)
T d1fota_         159 --YTLCGTPDYIAPEVV  173 (316)
T ss_dssp             --CCCCSCTTTCCHHHH
T ss_pred             --ccccCcccccCHHHH
Confidence              235699999999974

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.90  E-value=1.1e-24  Score=234.09  Aligned_cols=148  Identities=20%  Similarity=0.371  Sum_probs=121.7

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceee--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKAL--DCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l--~~l  751 (827)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++........+.+.+|++++++++|||||++++++.+++..++  +++
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            4688999999999999999986 4799999999987655556788999999999999999999999988775544  333


Q ss_pred             cc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCcc
Q 047196          752 HS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRSM  810 (827)
Q Consensus       752 ~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~~  810 (827)
                      ..         ....++..+...|+.||++||+|||   +.+|+||||||+|||            |||+|+.+..+...
T Consensus       109 ~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~  185 (352)
T d1koba_         109 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV  185 (352)
T ss_dssp             CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE
T ss_pred             CCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceecCCCCce
Confidence            21         1234778888999999999999996   578999999999998            99999887654332


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ....||+.|||||++
T Consensus       186 --~~~~gt~~y~aPE~~  200 (352)
T d1koba_         186 --KVTTATAEFAAPEIV  200 (352)
T ss_dssp             --EEECSSGGGCCHHHH
T ss_pred             --eeccCcccccCHHHH
Confidence              334589999999974

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-24  Score=229.96  Aligned_cols=149  Identities=26%  Similarity=0.293  Sum_probs=120.1

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..++||+|+||+||+|+. .+|+.||||+++...   ....+++.+|+++|++++|||||++++++.+++..++..
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence            5799999999999999999986 579999999997542   223567899999999999999999999999887665544


Q ss_pred             eccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+...          ..+.......++.|++.||+|||   +++|+||||||+|||          |||+|+........
T Consensus        85 ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~  161 (337)
T d1o6la_          85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT  161 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCC
T ss_pred             eccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhh---hcCccccccCHHHeEecCCCCEEEeecccccccccCCcc
Confidence            43332          23555666779999999999995   678999999999998          99999876543332


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                       ....+||+.|||||++
T Consensus       162 -~~~~~GT~~Y~aPE~~  177 (337)
T d1o6la_         162 -MKTFCGTPEYLAPEVL  177 (337)
T ss_dssp             -BCCCEECGGGCCGGGG
T ss_pred             -cccceeCHHHhhhhhc
Confidence             2345799999999985

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-24  Score=225.97  Aligned_cols=148  Identities=24%  Similarity=0.367  Sum_probs=119.4

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc------hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC------AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~------~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++....      ....+.|.+|++++++++|||||++++++.+++..+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            5689999999999999999986 479999999986432      123568999999999999999999999998887655


Q ss_pred             eeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--------------eeccccc
Q 047196          748 LDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--------------DFGIGRL  803 (827)
Q Consensus       748 l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--------------DFGla~~  803 (827)
                      +...+..          ...+++.....++.|++.||+|||   +++|+||||||+||+              |||+|+.
T Consensus        90 iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~  166 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  166 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhh---hcceeecccccceEEEecCCCcccceEecchhhhhh
Confidence            5333322          234677778899999999999996   568999999999997              9999987


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ......  .....||+.|||||++
T Consensus       167 ~~~~~~--~~~~~~t~~y~APE~~  188 (293)
T d1jksa_         167 IDFGNE--FKNIFGTPEFVAPEIV  188 (293)
T ss_dssp             CTTSCB--CSCCCCCGGGCCHHHH
T ss_pred             cCCCcc--ccccCCCCcccCHHHH
Confidence            654332  2334689999999974

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-24  Score=229.92  Aligned_cols=150  Identities=25%  Similarity=0.438  Sum_probs=114.5

Q ss_pred             hcccccceEecCCceEEEEEEecC-C-----cEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCce
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD-G-----IEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~-g-----~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~  746 (827)
                      ++|+..++||+|+||+||+|+... +     ..||||++.... ....+.|.+|+++++++ +|||||+++++|...+..
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~  116 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI  116 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeE
Confidence            568888999999999999998642 2     369999986542 33456799999999998 899999999999887654


Q ss_pred             ee--eeeccC-------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCc
Q 047196          747 AL--DCLHST-------------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPK  793 (827)
Q Consensus       747 ~l--~~l~~~-------------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~  793 (827)
                      ++  ++...+                               ...+++..+..|+.|+|+||+|||   +++||||||||+
T Consensus       117 ~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHRDlKp~  193 (325)
T d1rjba_         117 YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAAR  193 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGG
T ss_pred             EEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCchh
Confidence            44  332211                               123677888999999999999996   568999999999


Q ss_pred             cee----------eecccccccCCCccc-cccceecccccccccC
Q 047196          794 NVF----------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       794 NIl----------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ||+          |||+|+......... .....||++|||||++
T Consensus       194 Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l  238 (325)
T d1rjba_         194 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESL  238 (325)
T ss_dssp             GEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHH
T ss_pred             ccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHH
Confidence            998          999998775544322 2334589999999974

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=6.6e-25  Score=231.54  Aligned_cols=149  Identities=26%  Similarity=0.360  Sum_probs=104.4

Q ss_pred             hhcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      .+.|+..+.||+|+||+||+|+.+ +|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..++...
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            356888999999999999999865 68999999997543 2234578899999999999999999999988776554332


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCC
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDR  808 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~  808 (827)
                      +..          ...+++.+...++.|++.||+|||   +++|+||||||+||+             |||+|+......
T Consensus        88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~  164 (307)
T d1a06a_          88 LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS  164 (307)
T ss_dssp             CCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC----------
T ss_pred             ccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeEEccCCC
Confidence            221          235778888899999999999996   578999999999998             999998765433


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .  ....+||+.|||||++
T Consensus       165 ~--~~~~~GT~~y~APE~~  181 (307)
T d1a06a_         165 V--LSTACGTPGYVAPEVL  181 (307)
T ss_dssp             ----------CTTSCHHHH
T ss_pred             e--eeeeeeCccccCcHHH
Confidence            2  2335699999999974

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.2e-24  Score=229.55  Aligned_cols=155  Identities=25%  Similarity=0.354  Sum_probs=119.0

Q ss_pred             HHHHhhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhcCCCCceEEEeeeec
Q 047196          670 LFRATEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNIRHRNHVKRISSCSN  742 (827)
Q Consensus       670 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~  742 (827)
                      ++-..++|+..+.||+|+||+||+|+++      +++.||||++.... ....++|.+|++++++++|||+|+++++|..
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~   87 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV   87 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeecc
Confidence            3334568999999999999999999864      35789999997543 3446789999999999999999999999987


Q ss_pred             CCceeeeeeccC----------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEc
Q 047196          743 EDFKALDCLHST----------------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHC  788 (827)
Q Consensus       743 ~~~~~l~~l~~~----------------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHr  788 (827)
                      .+...+...+..                                  ...+++..++.|+.|+|+||+|||   +++||||
T Consensus        88 ~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~ivHr  164 (301)
T d1lufa_          88 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHR  164 (301)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCS
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCeEee
Confidence            654433221111                                  123677889999999999999996   6789999


Q ss_pred             cCCCccee----------eecccccccCCCccc-cccceecccccccccC
Q 047196          789 DLKPKNVF----------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       789 DlK~~NIl----------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      ||||+|||          |||+|+......... .+...||+.|||||++
T Consensus       165 DlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~  214 (301)
T d1lufa_         165 DLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI  214 (301)
T ss_dssp             CCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHH
T ss_pred             EEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHH
Confidence            99999999          999998765433222 2234589999999963

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.9e-24  Score=229.68  Aligned_cols=146  Identities=22%  Similarity=0.283  Sum_probs=118.2

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~  750 (827)
                      ++|+..+.||+|+||.||+|+.+ +|+.||||++....   ....+.+.+|++++++++|||||++++++......++..
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            57999999999999999999864 79999999986432   223467899999999999999999999998877654433


Q ss_pred             eccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          751 LHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       751 l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      .+..          ...++......++.|++.||.|||   +.+||||||||+|||          |||+|+.+....  
T Consensus       121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~--  195 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT--  195 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB--
T ss_pred             ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCCHHHcccCCCCCEEeeeceeeeeccccc--
Confidence            2222          234667778889999999999996   567999999999998          999998775332  


Q ss_pred             ccccceecccccccccC
Q 047196          811 IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~l  827 (827)
                        ....||+.|||||++
T Consensus       196 --~~~~Gt~~Y~APE~~  210 (350)
T d1rdqe_         196 --WTLCGTPEALAPEII  210 (350)
T ss_dssp             --CCCEECGGGCCHHHH
T ss_pred             --ccccCccccCCHHHH
Confidence              235699999999974

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-24  Score=223.01  Aligned_cols=150  Identities=25%  Similarity=0.402  Sum_probs=106.5

Q ss_pred             hcccccceEecCCceEEEEEEecC----CcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD----GIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-KAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-~~l  748 (827)
                      ++|+..+.||+|+||.||+|++..    +..||||+++.. .....+.|.+|++++++++|||||++++++.+... .++
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~   86 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIM   86 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEE
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEE
Confidence            578888999999999999998642    467999998653 33445789999999999999999999999965442 223


Q ss_pred             eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          749 DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       749 ~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ++...         ....+++.++..++.|+++||+|||   +++|+||||||+||+          |||+|+.......
T Consensus        87 E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~  163 (273)
T d1mp8a_          87 ELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY  163 (273)
T ss_dssp             ECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC------------
T ss_pred             EeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhc---ccCeeccccchhheeecCCCcEEEccchhheeccCCcc
Confidence            33221         2345788889999999999999995   578999999999998          9999987654433


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      ...+...||+.|||||++
T Consensus       164 ~~~~~~~gt~~y~apE~l  181 (273)
T d1mp8a_         164 YKASKGKLPIKWMAPESI  181 (273)
T ss_dssp             -------CCGGGCCHHHH
T ss_pred             eeccceecCcccchhhHh
Confidence            333334589999999974

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.2e-24  Score=223.01  Aligned_cols=151  Identities=27%  Similarity=0.386  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc------eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF------KAL  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~------~~l  748 (827)
                      ++|...+.||+|+||.||+|++ +|+.||||+++.... ....+++|+..+++++|||||+++++|..++.      .++
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~-~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~   80 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEE
Confidence            4566778999999999999986 578999999965432 22234456666678899999999999976542      233


Q ss_pred             eeeccC-------CCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEccCCCccee----------eecccccccC
Q 047196          749 DCLHST-------NCSLNIFDKLNIMIDVASALEYLHFS-----HSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       749 ~~l~~~-------~~~l~~~~~~~i~~~ia~~L~~Lh~~-----h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      ++...+       ...++|.++.+++.++|.|++|+|..     |+++||||||||+|||          |||+++....
T Consensus        81 Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~  160 (303)
T d1vjya_          81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS  160 (303)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred             ecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccC
Confidence            433321       23578889999999999999999953     6789999999999998          9999998755


Q ss_pred             CCccc---cccceecccccccccC
Q 047196          807 DRSMI---QTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~---~~~~~gt~~Y~APE~l  827 (827)
                      .....   ....+||++|||||++
T Consensus       161 ~~~~~~~~~~~~~gt~~y~aPE~~  184 (303)
T d1vjya_         161 ATDTIDIAPNHRVGTKRYMAPEVL  184 (303)
T ss_dssp             TTTEECC----CCSCGGGCCHHHH
T ss_pred             CCcceeccccceecccCcCChhhc
Confidence            43221   2234599999999973

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.8e-24  Score=224.30  Aligned_cols=145  Identities=28%  Similarity=0.376  Sum_probs=112.0

Q ss_pred             ccceEecCCceEEEEEEec-CCcEEEEEEEcccchH-----HHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          679 KENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAM-----ALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       679 ~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ..++||+|+||+||+|+.+ +|+.||||+++.....     ..+.+.+|++++++++|||||++++++..++..++...+
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            3578999999999999964 6999999998643221     134689999999999999999999999887755543322


Q ss_pred             c----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 S----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                      .          ....++..+...++.|+++||+|||   +++|+||||||+|||          |||+|+........ .
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~-~  157 (299)
T d1ua2a_          82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA-Y  157 (299)
T ss_dssp             CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC-C
T ss_pred             hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhh---ccceecccCCcceEEecCCCccccccCccccccCCCccc-c
Confidence            1          2345667778899999999999996   678999999999998          99999876544332 2


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ...+||+.|||||++
T Consensus       158 ~~~~gt~~y~aPE~~  172 (299)
T d1ua2a_         158 THQVVTRWYRAPELL  172 (299)
T ss_dssp             CCSCCCCTTCCHHHH
T ss_pred             cceecChhhccHHHH
Confidence            335699999999973

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.8e-24  Score=223.07  Aligned_cols=148  Identities=29%  Similarity=0.391  Sum_probs=118.8

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch--HHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA--MALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++....  ...+++.+|++++++++|||||++++++.+++..++...
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5788999999999999999986 5799999999965432  235679999999999999999999999988776554322


Q ss_pred             cc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcc
Q 047196          752 HS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSM  810 (827)
Q Consensus       752 ~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~  810 (827)
                      +.           ....+++.....++.|++.||+|||   +++||||||||+|||          |||+|+........
T Consensus        82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~  158 (298)
T d1gz8a_          82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT  158 (298)
T ss_dssp             CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBC
T ss_pred             ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccCchheeecccCcceeccCCcceeccCCccc
Confidence            21           1345788889999999999999996   577999999999999          99999877544332


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                       .....||+.|+|||+
T Consensus       159 -~~~~~gt~~y~apE~  173 (298)
T d1gz8a_         159 -YTHEVVTLWYRAPEI  173 (298)
T ss_dssp             -TTCCBCCCTTCCHHH
T ss_pred             -ceeecccceeeehhh
Confidence             233569999999996

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=1.1e-23  Score=219.61  Aligned_cols=150  Identities=21%  Similarity=0.392  Sum_probs=111.7

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---AMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++...   ....++|.+|++++++++|||||++++++...+      
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            5688899999999999999986 579999999996532   344568999999999999999999999987643      


Q ss_pred             ceeeeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 FKALDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 ~~~l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                      +.++++...        ....+++.+...++.|+++||+|||   +++|+||||||+|||          |||.++....
T Consensus        87 ~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD  163 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSCEEECCCTTCEECC-
T ss_pred             EEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCccccCcccccCccccceeehhhhhhhhcc
Confidence            233444332        1245788888999999999999996   578999999999998          8998876543


Q ss_pred             CCcc--ccccceecccccccccC
Q 047196          807 DRSM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ....  .....+||+.|||||++
T Consensus       164 ~~~~~~~~~~~~Gt~~Y~aPE~~  186 (277)
T d1o6ya_         164 SGNSVTQTAAVIGTAQYLSPEQA  186 (277)
T ss_dssp             ---------------TTCCHHHH
T ss_pred             ccccccccccccCcccccCHHHH
Confidence            3221  22334699999999974

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.3e-24  Score=220.86  Aligned_cols=150  Identities=25%  Similarity=0.386  Sum_probs=108.0

Q ss_pred             hcccccceEecCCceEEEEEEec--C--CcEEEEEEEccc---chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH--D--GIEVAIKVFHQN---CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~--~--g~~vAvK~l~~~---~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|+..+.||+|+||.||+|++.  +  +..||||++...   .....++|.+|++++++++|||||+++|+|.++...+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~l   87 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM   87 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchhe
Confidence            56888899999999999999863  2  247999998643   2334578999999999999999999999997764432


Q ss_pred             -eeeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          748 -LDCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       748 -l~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                       +++...         ....+++..+..++.|+|+||.|||   +++|+||||||+||+          |||+++.+...
T Consensus        88 v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~  164 (273)
T d1u46a_          88 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  164 (273)
T ss_dssp             EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             eeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeecHHHhccccccceeeccchhhhhcccC
Confidence             233221         1245788889999999999999996   578999999999998          99999987554


Q ss_pred             Cccc--cccceecccccccccC
Q 047196          808 RSMI--QTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~--~~~~~gt~~Y~APE~l  827 (827)
                      ....  .....||.+|||||++
T Consensus       165 ~~~~~~~~~~~~~~~~~aPE~~  186 (273)
T d1u46a_         165 DDHYVMQEHRKVPFAWCAPESL  186 (273)
T ss_dssp             CCEEEC-----CCGGGCCHHHH
T ss_pred             CCcceecCccccCcccCCHHHH
Confidence            3321  2223478999999964

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7e-24  Score=220.26  Aligned_cols=147  Identities=25%  Similarity=0.318  Sum_probs=116.0

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccch------HHHHHHHHHHHHHHhcC--CCCceEEEeeeecCCc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCA------MALKSFEAECEVMKNIR--HRNHVKRISSCSNEDF  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~Ei~~l~~l~--H~niv~~~~~~~~~~~  745 (827)
                      ++|+..++||+|+||+||+|+. .+|+.||||++.....      ...+++.+|++++++++  |||||++++++.+++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4688899999999999999986 5799999999864321      12234778999999997  8999999999988775


Q ss_pred             eeeeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eeccccc
Q 047196          746 KALDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRL  803 (827)
Q Consensus       746 ~~l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~  803 (827)
                      .++...+.           ....+++.+...++.|+++||+|||   +++|+||||||+|||           |||+|+.
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~  160 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGAL  160 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCCccccCcccceEEecCCCeEEECcccccee
Confidence            54432221           1235677778899999999999996   678999999999998           9999987


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      .....   .+..+||+.|||||++
T Consensus       161 ~~~~~---~~~~~GT~~y~aPE~~  181 (273)
T d1xwsa_         161 LKDTV---YTDFDGTRVYSPPEWI  181 (273)
T ss_dssp             CCSSC---BCCCCSCGGGSCHHHH
T ss_pred             ccccc---ccccccCCCcCCHHHH
Confidence            54332   2345699999999973

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.88  E-value=7.9e-24  Score=221.80  Aligned_cols=149  Identities=28%  Similarity=0.408  Sum_probs=118.3

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeeec
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCLH  752 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l~  752 (827)
                      ++|+..++||+|+||+||+|+.++|+.||||++....  ....+++.+|+.++++++|||||++++++..++..++...+
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            5788899999999999999999899999999996543  22356899999999999999999999999887765553222


Q ss_pred             ----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCcccc
Q 047196          753 ----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       753 ----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~~  812 (827)
                                .....++......++.|+++||+|||   +.+||||||||+|||          |||.|......... .
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~-~  157 (286)
T d1ob3a_          82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK-Y  157 (286)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC------
T ss_pred             ehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhc---cCcEEecCCCCceeeEcCCCCEEecccccceecccCccc-c
Confidence                      22456788888999999999999996   468999999999998          99999876543221 2


Q ss_pred             ccceecccccccccC
Q 047196          813 TETLVTIGYMAPGLL  827 (827)
Q Consensus       813 ~~~~gt~~Y~APE~l  827 (827)
                      ....|++.|+|||++
T Consensus       158 ~~~~~~~~y~~pE~~  172 (286)
T d1ob3a_         158 THEIVTLWYRAPDVL  172 (286)
T ss_dssp             ----CCCTTCCHHHH
T ss_pred             ceecccchhhhHHHH
Confidence            334589999999963

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-23  Score=220.37  Aligned_cols=151  Identities=23%  Similarity=0.420  Sum_probs=119.0

Q ss_pred             hhcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCc
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDF  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~  745 (827)
                      .++|+..++||+|+||.||+|++.      +++.||||+++... .....+|.+|+++++++ +|||||+++++|.+.+.
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~  101 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCE
Confidence            367888899999999999999852      46789999997543 34556899999999999 69999999999988765


Q ss_pred             eeeeeeccC----------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-
Q 047196          746 KALDCLHST----------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-  796 (827)
Q Consensus       746 ~~l~~l~~~----------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-  796 (827)
                      .++...+..                            ...+++.++..++.|||+|++|||   +++||||||||+||+ 
T Consensus       102 ~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLKp~NIl~  178 (311)
T d1t46a_         102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILL  178 (311)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred             EEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccccccccc
Confidence            444222211                            124678889999999999999996   567999999999998 


Q ss_pred             ---------eecccccccCCCcc-ccccceecccccccccC
Q 047196          797 ---------DFGIGRLLTGDRSM-IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---------DFGla~~~~~~~~~-~~~~~~gt~~Y~APE~l  827 (827)
                               |||+++........ ..+...||+.|||||++
T Consensus       179 ~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  219 (311)
T d1t46a_         179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI  219 (311)
T ss_dssp             ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHH
T ss_pred             cccCcccccccchheeccCCCcceEeeecccChHHcCHHHh
Confidence                     99999987654332 23345689999999963

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-23  Score=219.49  Aligned_cols=146  Identities=23%  Similarity=0.312  Sum_probs=118.1

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeee--ee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALD--CL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~--~l  751 (827)
                      ++|...+.||+|+||+||+|+.. +|+.||||+++.... ..+.+.+|+++|++++|||||++++++.+++..++.  ++
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~   83 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecC
Confidence            57888999999999999999865 689999999976543 345688999999999999999999999887755543  22


Q ss_pred             cc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------eecccccccCCCcc
Q 047196          752 HS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------DFGIGRLLTGDRSM  810 (827)
Q Consensus       752 ~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------DFGla~~~~~~~~~  810 (827)
                      ..         ....+++.+...++.|+++|++|||   +.+|+||||||+|||            |||+++....... 
T Consensus        84 ~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~-  159 (321)
T d1tkia_          84 SGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN-  159 (321)
T ss_dssp             CCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE-
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhccccCCc-
Confidence            21         1235778888899999999999996   578999999999998            9999987654332 


Q ss_pred             ccccceeccccccccc
Q 047196          811 IQTETLVTIGYMAPGL  826 (827)
Q Consensus       811 ~~~~~~gt~~Y~APE~  826 (827)
                       .....||+.|+|||+
T Consensus       160 -~~~~~~t~~y~ape~  174 (321)
T d1tkia_         160 -FRLLFTAPEYYAPEV  174 (321)
T ss_dssp             -EEEEESCGGGSCHHH
T ss_pred             -ccccccccccccchh
Confidence             223458999999996

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.88  E-value=6.8e-23  Score=212.62  Aligned_cols=148  Identities=22%  Similarity=0.352  Sum_probs=119.3

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc---------hHHHHHHHHHHHHHHhcC-CCCceEEEeeeecC
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC---------AMALKSFEAECEVMKNIR-HRNHVKRISSCSNE  743 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---------~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~  743 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++...         ....+.+.+|++++++++ |||||++++++.+.
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5788899999999999999986 478999999986532         112356889999999997 99999999999887


Q ss_pred             Cceee--eeeccC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccc
Q 047196          744 DFKAL--DCLHST--------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRL  803 (827)
Q Consensus       744 ~~~~l--~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~  803 (827)
                      +..++  +++..+        ...+++.+...++.|+++||+|||   +++|+||||||+||+          |||+|+.
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~  159 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ  159 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HcCCcccccccceEEEcCCCCeEEccchheeE
Confidence            76554  333221        245788888999999999999996   567999999999998          9999988


Q ss_pred             ccCCCccccccceecccccccccC
Q 047196          804 LTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       804 ~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      +.....  .+..+||+.|+|||++
T Consensus       160 ~~~~~~--~~~~~gt~~y~~PE~~  181 (277)
T d1phka_         160 LDPGEK--LREVCGTPSYLAPEII  181 (277)
T ss_dssp             CCTTCC--BCCCCSCGGGCCHHHH
T ss_pred             ccCCCc--eeeeeccCCCCCHHHh
Confidence            754332  2335699999999963

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=4.3e-23  Score=222.77  Aligned_cols=147  Identities=23%  Similarity=0.255  Sum_probs=113.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccch---HHHHHHH---HHHHHHHhcCCCCceEEEeeeecCCcee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCA---MALKSFE---AECEVMKNIRHRNHVKRISSCSNEDFKA  747 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~---~Ei~~l~~l~H~niv~~~~~~~~~~~~~  747 (827)
                      ++|+..++||+|+||.||+|+.. +|+.||||++.....   .....+.   +|+++++.++|||||++++++..++..+
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            57889999999999999999864 699999999864321   1122333   4467777888999999999998877555


Q ss_pred             eeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCC
Q 047196          748 LDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGD  807 (827)
Q Consensus       748 l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~  807 (827)
                      +...+...          ..+.+.+...++.+++.||+|||   +++||||||||+|||          |||+|+.+...
T Consensus        84 ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred             EEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHH---HCCccceeeccceeEEcCCCcEEEeeeceeeecCCC
Confidence            43333222          23556677889999999999996   678999999999999          99999876543


Q ss_pred             CccccccceecccccccccC
Q 047196          808 RSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..   ...+||+.|||||++
T Consensus       161 ~~---~~~~GT~~y~APE~~  177 (364)
T d1omwa3         161 KP---HASVGTHGYMAPEVL  177 (364)
T ss_dssp             CC---CSCCSCGGGCCHHHH
T ss_pred             cc---cccccccccchhHHh
Confidence            32   234699999999974

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-23  Score=219.84  Aligned_cols=151  Identities=25%  Similarity=0.366  Sum_probs=118.6

Q ss_pred             hhcccccceEecCCceEEEEEEec------CCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCce
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFK  746 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~  746 (827)
                      .++|...+.||+|+||.||+|+++      +++.||||+++.. ..+....|.+|++++++++|||||+++++|..++..
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~   98 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT   98 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCce
Confidence            367888899999999999999863      3578999999754 344556799999999999999999999999876655


Q ss_pred             eeeeeccCC--------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------
Q 047196          747 ALDCLHSTN--------------------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------  796 (827)
Q Consensus       747 ~l~~l~~~~--------------------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------  796 (827)
                      ++...+...                    ..+++..+..|+.++|+||.|||   +++|+||||||+|||          
T Consensus        99 ~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH---~~~ivHrDlk~~NiLld~~~~~Kl~  175 (308)
T d1p4oa_          99 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIG  175 (308)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEEEC
T ss_pred             eEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeeceEcCCceeecCCceEEEe
Confidence            543333221                    23567778899999999999996   468999999999998          


Q ss_pred             eecccccccCCCccc-cccceecccccccccC
Q 047196          797 DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                      |||+|+.+....... .....||+.|||||++
T Consensus       176 DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l  207 (308)
T d1p4oa_         176 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESL  207 (308)
T ss_dssp             CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHH
T ss_pred             ecccceeccCCcceeeccceecccccCCHHHH
Confidence            999999775443322 2334589999999963

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-23  Score=219.21  Aligned_cols=145  Identities=26%  Similarity=0.437  Sum_probs=112.1

Q ss_pred             cceEecCCceEEEEEEecC----CcEEEEEEEcc-cchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-ce--eeeee
Q 047196          680 ENLIGVGSFGSVYKGRLHD----GIEVAIKVFHQ-NCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FK--ALDCL  751 (827)
Q Consensus       680 ~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~-~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~--~l~~l  751 (827)
                      .++||+|+||+||+|++.+    +..||||+++. ......++|.+|++++++++|||||+++|+|...+ ..  ++++.
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            4689999999999998743    24699999974 34556688999999999999999999999987644 22  23333


Q ss_pred             cc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc-
Q 047196          752 HS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI-  811 (827)
Q Consensus       752 ~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~-  811 (827)
                      ..         ......+.+++.++.|+|+||.|+|   +++|+||||||+|||          |||+++......... 
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~  188 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  188 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhc---ccCcccCCccHHhEeECCCCCEEEecccchhhccccccccc
Confidence            22         2234567788999999999999995   678999999999999          999999875443221 


Q ss_pred             --cccceecccccccccC
Q 047196          812 --QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 --~~~~~gt~~Y~APE~l  827 (827)
                        .....||+.|+|||++
T Consensus       189 ~~~~~~~gt~~y~aPE~~  206 (311)
T d1r0pa_         189 HNKTGAKLPVKWMALESL  206 (311)
T ss_dssp             TCTTCSSCCGGGSCHHHH
T ss_pred             eecccccccccccChHHH
Confidence              2234589999999963

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.2e-22  Score=206.15  Aligned_cols=177  Identities=20%  Similarity=0.149  Sum_probs=125.8

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      ++++|+|++|+|++..+..|.++++|++|+|++|+|+. +| .++.+++|++|+|++|++++ ++..+.++++|++|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccccc
Confidence            56777777777776666677777777777777777764 33 34567777777777777763 45566777777777777


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++.+..+..+..+.+++.|++++|.+++..+..+..+++++.+++++|++++..+..++.+++|+.|||++|+|+ .+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence            77777666666677777777777777777766666677777777777777777766666777777777777777777 66


Q ss_pred             cccccCCCCCCEEECCCCcce
Q 047196          541 PSTIGDLKDLQNISLACNGLE  561 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~  561 (827)
                      |+.+..+++|+.|+|++|.+.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhHCCCCCCCEEEecCCCCC
Confidence            777777777777777777553

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5e-23  Score=217.02  Aligned_cols=150  Identities=22%  Similarity=0.403  Sum_probs=106.9

Q ss_pred             hcccccceEecCCceEEEEEEec------CCcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCc-
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH------DGIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDF-  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~-  745 (827)
                      ++|+..+.||+|+||+||+|+..      +++.||||++.... ....+++.+|++++.++ +|+|||++++++...+. 
T Consensus        13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~   92 (299)
T d1ywna1          13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   92 (299)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC
T ss_pred             HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCe
Confidence            57888999999999999999853      34689999986543 34456788899888887 58899999999876542 


Q ss_pred             --eeeeeeccC------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---
Q 047196          746 --KALDCLHST------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---  796 (827)
Q Consensus       746 --~~l~~l~~~------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---  796 (827)
                        ..+++...+                        ...+++.++..++.|+|+||+|||   +++||||||||+|||   
T Consensus        93 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDlKp~NILl~~  169 (299)
T d1ywna1          93 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSE  169 (299)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECG
T ss_pred             EEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcCCccceeECC
Confidence              223333211                        123678888999999999999996   568999999999998   


Q ss_pred             -------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 -------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 -------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                             |||+|+......... .....||+.|||||++
T Consensus       170 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l  208 (299)
T d1ywna1         170 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI  208 (299)
T ss_dssp             GGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHH
T ss_pred             CCcEEEccCcchhhccccccccccCceeeCccccchhHh
Confidence                   999998765443332 2334599999999974

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.8e-23  Score=212.68  Aligned_cols=143  Identities=28%  Similarity=0.449  Sum_probs=106.4

Q ss_pred             hcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC-ceee--eee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED-FKAL--DCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~-~~~l--~~l  751 (827)
                      ++|+..+.||+|+||.||+|+++ |+.||||+++...  ..++|.+|++++++++|||||+++|+|.+++ ..++  ++.
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~   83 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   83 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred             HHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEecc
Confidence            56777899999999999999985 7889999996543  3467999999999999999999999986543 2223  333


Q ss_pred             ccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ..+          ...++|..+++|+.|||.|++|||   +++|+||||||+||+          |||+++......   
T Consensus        84 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~---  157 (262)
T d1byga_          84 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ---  157 (262)
T ss_dssp             TTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-----------
T ss_pred             CCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccc---cCceeccccchHhheecCCCCEeecccccceecCCCC---
Confidence            221          123678889999999999999996   568999999999998          999998654332   


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                       ....+|+.|||||++
T Consensus       158 -~~~~~~~~y~aPE~l  172 (262)
T d1byga_         158 -DTGKLPVKWTAPEAL  172 (262)
T ss_dssp             -----CCTTTSCHHHH
T ss_pred             -ccccccccCCChHHH
Confidence             223479999999974

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.1e-23  Score=216.69  Aligned_cols=149  Identities=20%  Similarity=0.280  Sum_probs=117.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccc---hHHHHHHHHHHHHHH-hcCCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNC---AMALKSFEAECEVMK-NIRHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~Ei~~l~-~l~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|...+.||+|+||+||+|+.. +|+.||||+++...   ....+.+.+|+.++. .++|||||++++++.+++..++.
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            57888999999999999999864 68999999996532   223456777887765 68999999999999988766554


Q ss_pred             eeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCc
Q 047196          750 CLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRS  809 (827)
Q Consensus       750 ~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~  809 (827)
                      ..+...          ..++..+...++.||+.||+|||   +++|+||||||+|||          |||+|+.......
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~  158 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA  158 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCcccceeecCCCceeccccchhhhcccccc
Confidence            433322          34566777889999999999996   567999999999999          9999987654332


Q ss_pred             cccccceecccccccccC
Q 047196          810 MIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       810 ~~~~~~~gt~~Y~APE~l  827 (827)
                      . .+..+||+.|||||++
T Consensus       159 ~-~~~~~gt~~y~aPE~~  175 (320)
T d1xjda_         159 K-TNTFCGTPDYIAPEIL  175 (320)
T ss_dssp             C-BCCCCSCGGGCCHHHH
T ss_pred             c-ccccCCCCCcCCHHHH
Confidence            2 2335699999999974

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-23  Score=218.22  Aligned_cols=148  Identities=28%  Similarity=0.467  Sum_probs=112.5

Q ss_pred             hcccccceEecCCceEEEEEEec-CCc--EEEEEEEccc-chHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCCceeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGI--EVAIKVFHQN-CAMALKSFEAECEVMKNI-RHRNHVKRISSCSNEDFKALD  749 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~~~~l~  749 (827)
                      ++|+..++||+|+||+||+|+++ +|.  .||||++... .....++|.+|+++++++ +|||||+++|+|.+++..++.
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            56788899999999999999875 454  5788888643 333456899999999999 799999999999987765543


Q ss_pred             eeccC--------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------
Q 047196          750 CLHST--------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------  796 (827)
Q Consensus       750 ~l~~~--------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------  796 (827)
                      ..+..                          ...+++.++..++.|||+|+.|+|   +++|+||||||+|||       
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~~~~  166 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA  166 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCCCce
Confidence            32211                          245788889999999999999996   568999999999998       


Q ss_pred             ---eecccccccCCCccccccceecccccccccC
Q 047196          797 ---DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ---DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                         |||+|+.......  .....||+.|+|||++
T Consensus       167 kl~DfG~a~~~~~~~~--~~~~~gt~~y~aPE~l  198 (309)
T d1fvra_         167 KIADFGLSRGQEVYVK--KTMGRLPVRWMAIESL  198 (309)
T ss_dssp             EECCTTCEESSCEECC--C----CCTTTCCHHHH
T ss_pred             EEcccccccccccccc--ccceecCCcccchHHh
Confidence               9999986543222  1223489999999964

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.7e-22  Score=205.17  Aligned_cols=195  Identities=23%  Similarity=0.216  Sum_probs=173.0

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      .+.+++.++++++ .+|..+.  +++++|||++|+|++..+..|.++++|++|+|++|+|+ .+| .+..+++|++|+|+
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence            5667899999998 4676553  58999999999999888889999999999999999998 444 35789999999999


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|++++ +|..+..+++|+.|++++|.+.+..+..+..+.++..|++++|.++...+..+..++.++.+++++|+|++..
T Consensus        86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             cccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            999984 6778999999999999999999999999999999999999999999888888899999999999999999988


Q ss_pred             cccccCCCCCCEEECCCCcceeecCCCC---cCCceEeCcCCcCe
Q 047196          541 PSTIGDLKDLQNISLACNGLEGLIPESF---GYLTELNLSFNKLE  582 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~L~~L~ls~N~l~  582 (827)
                      +..|..+++|+.|||++|+|+ .+|+.+   .+|+.|+|++|.+.
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            899999999999999999999 677654   37888998888764

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-22  Score=216.91  Aligned_cols=151  Identities=25%  Similarity=0.352  Sum_probs=115.0

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc-chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN-CAMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF------  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~------  745 (827)
                      +.+|+..+.||+|+||+||+|+. .+|+.||||+++.. .....+++.+|+++|++++|||+|++++++....+      
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            35688899999999999999985 57999999999753 34456789999999999999999999999876542      


Q ss_pred             eeeeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          746 KALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       746 ~~l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                      .+++.+..       ....+++.....++.|+++||+|||   +++||||||||+|||          |||+|+......
T Consensus        87 ~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH---~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~  163 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH  163 (345)
T ss_dssp             EEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGG
T ss_pred             EEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCC
Confidence            12222221       1235677788899999999999996   568999999999998          999998764332


Q ss_pred             cc--ccccceecccccccccC
Q 047196          809 SM--IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~--~~~~~~gt~~Y~APE~l  827 (827)
                      ..  .....+||+.|+|||++
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~l  184 (345)
T d1pmea_         164 DHTGFLTEYVATRWYRAPEIM  184 (345)
T ss_dssp             CBCCTTCCCCSCGGGCCGGGT
T ss_pred             ccceeeccccccceechHHHh
Confidence            21  12335589999999975

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-22  Score=213.27  Aligned_cols=150  Identities=27%  Similarity=0.422  Sum_probs=112.3

Q ss_pred             hcccccceEecCCceEEEEEEecC--------CcEEEEEEEcccc-hHHHHHHHHHHHHHHhc-CCCCceEEEeeeecCC
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLHD--------GIEVAIKVFHQNC-AMALKSFEAECEVMKNI-RHRNHVKRISSCSNED  744 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~~  744 (827)
                      ++|...+.||+|+||.||+|+...        +..||||+++... .....++.+|+..+.++ +|||||+++++|.+++
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~   92 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   92 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCC
Confidence            578888999999999999998532        3579999997654 34457899999999998 8999999999998876


Q ss_pred             ceee--eeeccC------------------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee--
Q 047196          745 FKAL--DCLHST------------------------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF--  796 (827)
Q Consensus       745 ~~~l--~~l~~~------------------------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl--  796 (827)
                      ..++  +++..+                        ...+++.++..++.|+|+||+|||   +++||||||||+|||  
T Consensus        93 ~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiKp~NiLl~  169 (299)
T d1fgka_          93 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVT  169 (299)
T ss_dssp             SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEC
T ss_pred             eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeecccceeec
Confidence            5443  222111                        124688889999999999999995   678999999999998  


Q ss_pred             --------eecccccccCCCccc-cccceecccccccccC
Q 047196          797 --------DFGIGRLLTGDRSMI-QTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 --------DFGla~~~~~~~~~~-~~~~~gt~~Y~APE~l  827 (827)
                              |||+++......... .....||+.|||||++
T Consensus       170 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l  209 (299)
T d1fgka_         170 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL  209 (299)
T ss_dssp             TTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHH
T ss_pred             CCCCeEeccchhhccccccccccccccCCCChhhhhhhHh
Confidence                    999998876544332 2234589999999963

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-22  Score=218.37  Aligned_cols=147  Identities=24%  Similarity=0.403  Sum_probs=111.7

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++...  .....+.+.+|+++|++++|||+|++++++...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            35788899999999999999986 46999999999743  3344578899999999999999999999987654      


Q ss_pred             --ceeeeeecc------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 --FKALDCLHS------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 --~~~l~~l~~------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                        +..++++..      ....+++.....++.|++.||+|||   +.+|+||||||+|||          |||+|+....
T Consensus        97 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~  173 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADS  173 (346)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             eEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCcchhhcccccccccccccceeccCC
Confidence              222333211      1245788888999999999999996   578999999999999          9999987643


Q ss_pred             CCccccccceecccccccccC
Q 047196          807 DRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ..    +..+||+.|||||++
T Consensus       174 ~~----~~~~~t~~y~aPE~~  190 (346)
T d1cm8a_         174 EM----TGYVVTRWYRAPEVI  190 (346)
T ss_dssp             SC----CSSCSCGGGCCTHHH
T ss_pred             cc----ccccccccccCHHHH
Confidence            32    335689999999963

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-22  Score=213.53  Aligned_cols=143  Identities=24%  Similarity=0.408  Sum_probs=110.8

Q ss_pred             hccccc-ceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhc-CCCCceEEEeeeecC----C--c
Q 047196          675 EKFSKE-NLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNI-RHRNHVKRISSCSNE----D--F  745 (827)
Q Consensus       675 ~~~~~~-~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l-~H~niv~~~~~~~~~----~--~  745 (827)
                      ++|... ++||+|+||+||+|+. .+|+.||||+++..     +.+.+|++++.++ +|||||++++++.+.    .  +
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~   85 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   85 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEE
Confidence            567765 4699999999999986 57899999998643     3467899987655 899999999987541    2  2


Q ss_pred             eeeeeeccC----------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccc
Q 047196          746 KALDCLHST----------NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGR  802 (827)
Q Consensus       746 ~~l~~l~~~----------~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~  802 (827)
                      .+++++..+          ...+++.+...|+.|++.||+|||   +.+|+||||||+|||             |||+|+
T Consensus        86 ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH---~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~  162 (335)
T d2ozaa1          86 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK  162 (335)
T ss_dssp             EEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             EEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHH---HcCCccccccccccccccccccccccccccceee
Confidence            233333221          234778888999999999999996   678999999999998             999998


Q ss_pred             cccCCCccccccceecccccccccC
Q 047196          803 LLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ........  ...+||++|||||++
T Consensus       163 ~~~~~~~~--~~~~gt~~y~aPE~~  185 (335)
T d2ozaa1         163 ETTSHNSL--TTPCYTPYYVAPEVL  185 (335)
T ss_dssp             ECCCCCCC--CCCSCCCSSCCCCCC
T ss_pred             eccCCCcc--ccccCCcccCCcHHH
Confidence            77544332  335699999999985

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.86  E-value=4.5e-22  Score=212.60  Aligned_cols=144  Identities=21%  Similarity=0.383  Sum_probs=114.9

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCC--cee--e
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNED--FKA--L  748 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~--~~~--l  748 (827)
                      ++|+..++||+|+||+||+|+. .+|+.||||+++...   .+++.+|+++|++++ |||||++++++....  ..+  +
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            5789999999999999999986 568999999996543   356889999999996 999999999986542  222  2


Q ss_pred             eeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccccCCCcccc
Q 047196          749 DCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLLTGDRSMIQ  812 (827)
Q Consensus       749 ~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~~~~~~~~~  812 (827)
                      +++...     ...++..+...++.|+++||+|||   +++|+||||||+|||           |||+|+.......  .
T Consensus       112 e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~--~  186 (328)
T d3bqca1         112 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE--Y  186 (328)
T ss_dssp             ECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC--C
T ss_pred             eecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHh---hcccccccccccceEEcCCCCeeeecccccceeccCCCc--c
Confidence            332221     235677888899999999999996   678999999999998           9999987654432  2


Q ss_pred             ccceeccccccccc
Q 047196          813 TETLVTIGYMAPGL  826 (827)
Q Consensus       813 ~~~~gt~~Y~APE~  826 (827)
                      ...+||+.|+|||+
T Consensus       187 ~~~~~t~~y~aPE~  200 (328)
T d3bqca1         187 NVRVASRYFKGPEL  200 (328)
T ss_dssp             CSCCSCGGGCCHHH
T ss_pred             cccccCccccCccc
Confidence            33468999999996

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.7e-22  Score=213.78  Aligned_cols=149  Identities=28%  Similarity=0.458  Sum_probs=110.0

Q ss_pred             hhcccccceEecCCceEEEEEEe-cC-CcEEEEEEEcccch--HHHHHHHHHHHHHHhc---CCCCceEEEeeeecCC--
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HD-GIEVAIKVFHQNCA--MALKSFEAECEVMKNI---RHRNHVKRISSCSNED--  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~-g~~vAvK~l~~~~~--~~~~~~~~Ei~~l~~l---~H~niv~~~~~~~~~~--  744 (827)
                      .++|+..+.||+|+||+||+|+. ++ ++.||||+++....  .....+.+|+++++.+   +|||||++++++....  
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46799999999999999999986 34 67899999864321  1233566788877766   7999999999885321  


Q ss_pred             ---ceee--eeecc---------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecc
Q 047196          745 ---FKAL--DCLHS---------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGI  800 (827)
Q Consensus       745 ---~~~l--~~l~~---------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGl  800 (827)
                         ..++  +++..         ....+++.....++.|++.||+|||   +++|+||||||+|||          |||+
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH---~~~ivHrDiKp~NILi~~~~~~kl~dfg~  162 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGL  162 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSCCS
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecCCCccEEEEcCCCCeeecchhh
Confidence               1122  22211         1234667777889999999999996   578999999999999          9999


Q ss_pred             cccccCCCccccccceecccccccccC
Q 047196          801 GRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       801 a~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                      ++.......  ....+||+.|||||++
T Consensus       163 ~~~~~~~~~--~~~~~gT~~Y~APE~~  187 (305)
T d1blxa_         163 ARIYSFQMA--LTSVVVTLWYRAPEVL  187 (305)
T ss_dssp             CCCCCGGGG--GCCCCCCCTTCCHHHH
T ss_pred             hhhhccccc--CCCcccChhhcCcchh
Confidence            886543322  2345699999999974

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.2e-22  Score=214.58  Aligned_cols=142  Identities=29%  Similarity=0.434  Sum_probs=111.5

Q ss_pred             cccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------cee-
Q 047196          676 KFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------FKA-  747 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------~~~-  747 (827)
                      +|+..++||+|+||+||+|+.. +|+.||||++.....    .+.+|+++|++++|+|||++++++....      +.+ 
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            5888899999999999999974 699999999965432    2357999999999999999999985422      122 


Q ss_pred             -eeeecc-----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-----------eecccccc
Q 047196          748 -LDCLHS-----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-----------DFGIGRLL  804 (827)
Q Consensus       748 -l~~l~~-----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-----------DFGla~~~  804 (827)
                       ++++..           ....+++.+...++.|+++||+|||   +++|+||||||+|||           |||+|+..
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH---~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~  173 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  173 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTTCCEEECCCTTCEEC
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHH---hcCCcccCCCcceEEEecCCCceeEecccchhhc
Confidence             233211           1235778888899999999999995   689999999999998           99999876


Q ss_pred             cCCCccccccceeccccccccc
Q 047196          805 TGDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       805 ~~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ......  ...+||+.|+|||+
T Consensus       174 ~~~~~~--~~~~gt~~y~aPE~  193 (350)
T d1q5ka_         174 VRGEPN--VSYICSRYYRAPEL  193 (350)
T ss_dssp             CTTSCC--CSCCSCTTSCCHHH
T ss_pred             cCCccc--ccccccccccChHH
Confidence            544322  33569999999996

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.3e-22  Score=211.90  Aligned_cols=147  Identities=26%  Similarity=0.414  Sum_probs=112.5

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCceEEEeeeec-CCceee--ee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNHVKRISSCSN-EDFKAL--DC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~-~~~~~l--~~  750 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.....  .+++.+|++++++++|+|+|..++.|.. .+..++  ++
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            4688899999999999999986 4689999999865432  2457899999999999887777666644 343332  22


Q ss_pred             ecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee-------------eecccccccCCCc
Q 047196          751 LHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF-------------DFGIGRLLTGDRS  809 (827)
Q Consensus       751 l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl-------------DFGla~~~~~~~~  809 (827)
                      +..        ....+++.....++.|+++||+|||   +++|+||||||+||+             |||+|+.+.....
T Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~  161 (299)
T d1ckia_          85 LGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDART  161 (299)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTT
T ss_pred             cCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHhhccccccCCCceeeeeccCcceecccccc
Confidence            211        2345788888999999999999996   577999999999996             9999998754332


Q ss_pred             c------ccccceeccccccccc
Q 047196          810 M------IQTETLVTIGYMAPGL  826 (827)
Q Consensus       810 ~------~~~~~~gt~~Y~APE~  826 (827)
                      .      .....+||+.|||||+
T Consensus       162 ~~~~~~~~~~~~~gt~~y~aPE~  184 (299)
T d1ckia_         162 HQHIPYRENKNLTGTARYASINT  184 (299)
T ss_dssp             CCBCCCCBCCSCCCCSSSCCHHH
T ss_pred             ccceeccccCCcCCCccccCHHH
Confidence            1      1223459999999996

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.2e-22  Score=212.89  Aligned_cols=151  Identities=27%  Similarity=0.427  Sum_probs=111.6

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCc-----
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDF-----  745 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~-----  745 (827)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++....  ....+++.+|+++|++++|||++++++.+.....     
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            36899999999999999999986 579999999985432  2234678999999999999999999998865321     


Q ss_pred             ---e--eeeeecc--------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccc
Q 047196          746 ---K--ALDCLHS--------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGR  802 (827)
Q Consensus       746 ---~--~l~~l~~--------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~  802 (827)
                         .  .+++...        ............|+.|+++|+.|||   +.+|+||||||+|||          |||+|+
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCCcEEeeecceee
Confidence               1  1222211        1234556677889999999999996   678999999999999          999998


Q ss_pred             cccCCCcc---ccccceecccccccccC
Q 047196          803 LLTGDRSM---IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       803 ~~~~~~~~---~~~~~~gt~~Y~APE~l  827 (827)
                      .+......   .....+||++|+|||++
T Consensus       166 ~~~~~~~~~~~~~~~~~gT~~Y~aPE~~  193 (318)
T d3blha1         166 AFSLAKNSQPNRYTNRVVTLWYRPPELL  193 (318)
T ss_dssp             ECCC-----CCCCCSCCSCGGGCCHHHH
T ss_pred             ecccccccccccccceecCHHHhhHHHH
Confidence            76543221   12234689999999963

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.8e-22  Score=207.68  Aligned_cols=149  Identities=26%  Similarity=0.358  Sum_probs=119.1

Q ss_pred             hcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCCceeeeee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNEDFKALDCL  751 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~~~~l~~l  751 (827)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++...  ....+++.+|++++++++|||||++.+++...+...+...
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            4788899999999999999986 478999999986432  3346789999999999999999999999988876554322


Q ss_pred             cc----------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCCccc
Q 047196          752 HS----------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDRSMI  811 (827)
Q Consensus       752 ~~----------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~~~~  811 (827)
                      ..          ......+.....++.|+++||+|||   +.+|+||||||+|||          |||.|+........ 
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~-  157 (292)
T d1unla_          82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC-  157 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSC-
T ss_pred             eccccccccccccccccchhHHHHHHHHHHHHHHHhh---cCCEeeecccCcccccccCCceeeeecchhhcccCCCcc-
Confidence            21          2345677788899999999999996   568999999999998          99999887544332 


Q ss_pred             cccceecccccccccC
Q 047196          812 QTETLVTIGYMAPGLL  827 (827)
Q Consensus       812 ~~~~~gt~~Y~APE~l  827 (827)
                      .....+++.|+|||++
T Consensus       158 ~~~~~~~~~~~~pe~~  173 (292)
T d1unla_         158 YSAEVVTLWYRPPDVL  173 (292)
T ss_dssp             CCSCCSCGGGCCHHHH
T ss_pred             ceeeccccchhhhhHh
Confidence            2223478899999963

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.85  E-value=7.2e-22  Score=207.15  Aligned_cols=148  Identities=18%  Similarity=0.229  Sum_probs=113.8

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEcccchHHHHHHHHHHHHHHhcCC-CCceEEEeeeecCCceee--ee
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQNCAMALKSFEAECEVMKNIRH-RNHVKRISSCSNEDFKAL--DC  750 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H-~niv~~~~~~~~~~~~~l--~~  750 (827)
                      ++|+..+.||+|+||+||+|+.. +|+.||||++....  ..+.+.+|+++++.++| +|++.+.+++......++  ++
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            57888999999999999999864 68999999986532  22357789999999986 788888888877664443  22


Q ss_pred             ec--------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------------eecccccccCC
Q 047196          751 LH--------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------------DFGIGRLLTGD  807 (827)
Q Consensus       751 l~--------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------------DFGla~~~~~~  807 (827)
                      +.        .....+...+...++.+++.||+|||   +.+|+||||||+||+               |||+|+.+...
T Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~  159 (293)
T d1csna_          83 LGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP  159 (293)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred             cCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEcccceeEEcccC
Confidence            21        11235677888899999999999995   788999999999987               99999987543


Q ss_pred             Ccc------ccccceecccccccccC
Q 047196          808 RSM------IQTETLVTIGYMAPGLL  827 (827)
Q Consensus       808 ~~~------~~~~~~gt~~Y~APE~l  827 (827)
                      ...      .....+||+.|||||++
T Consensus       160 ~~~~~~~~~~~~~~~GT~~y~aPE~~  185 (293)
T d1csna_         160 VTKQHIPYREKKNLSGTARYMSINTH  185 (293)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             ccccceeecccCceEEchhhcCHHHh
Confidence            221      12234599999999963

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2e-21  Score=209.68  Aligned_cols=148  Identities=24%  Similarity=0.321  Sum_probs=107.0

Q ss_pred             hcccccceEecCCceEEEEEEec-CCcEEEEEEEccc--chHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------c
Q 047196          675 EKFSKENLIGVGSFGSVYKGRLH-DGIEVAIKVFHQN--CAMALKSFEAECEVMKNIRHRNHVKRISSCSNED------F  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------~  745 (827)
                      ++|+..++||+|+||+||+|+.. +|+.||||++...  .....+++.+|+.++++++|||||++++++...+      .
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            56888999999999999999865 6999999999753  2344567899999999999999999999986432      2


Q ss_pred             --eeeeeeccC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccCCC
Q 047196          746 --KALDCLHST-----NCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTGDR  808 (827)
Q Consensus       746 --~~l~~l~~~-----~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~~~  808 (827)
                        ..++++...     ...+++.+...++.|++.|++|||   +.+|+||||||+|||          |||+++......
T Consensus        97 ~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH---~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~  173 (355)
T d2b1pa1          97 VYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF  173 (355)
T ss_dssp             EEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             eEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhh---hcccccccCCccccccccccceeeechhhhhcccccc
Confidence              233333221     245677888899999999999996   568999999999999          899888764432


Q ss_pred             ccccccceecccccccccC
Q 047196          809 SMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       809 ~~~~~~~~gt~~Y~APE~l  827 (827)
                      .  .+..+||+.|+|||++
T Consensus       174 ~--~~~~~~t~~y~aPE~l  190 (355)
T d2b1pa1         174 M--MTPYVVTRYYRAPEVI  190 (355)
T ss_dssp             ---------CCTTCCHHHH
T ss_pred             c--cccccccccccChhhh
Confidence            2  2334589999999974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=1.8e-18  Score=185.77  Aligned_cols=309  Identities=23%  Similarity=0.272  Sum_probs=178.2

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcC
Q 047196           99 RVTALNISSLNLQGTIPPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLD  178 (827)
Q Consensus        99 ~v~~L~L~~~~l~g~~~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~  178 (827)
                      +++.|||++++++. +|+.   +++|++|+|++|+|+ .+|+.   +.+|+.|++++|+++.. +               
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~---------------   94 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-S---------------   94 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-C---------------
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-h---------------
Confidence            46678888888874 5643   467888888888887 66754   35678888888877621 1               


Q ss_pred             CCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccc
Q 047196          179 SDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGE  258 (827)
Q Consensus       179 ~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (827)
                            .+       .+.|++|++++|.+. .+|. ++++++|++|++++|.++... .   ....+..+.+.++...  
T Consensus        95 ------~l-------p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--  153 (353)
T d1jl5a_          95 ------DL-------PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--  153 (353)
T ss_dssp             ------SC-------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--
T ss_pred             ------hh-------ccccccccccccccc-cccc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--
Confidence                  11       125777777777776 3443 567777888888777776432 2   2345566666655543  


Q ss_pred             ccccccCcCCCcEEEeecccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccC
Q 047196          259 IPHEIGYLPNLENLVLGFNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITN  338 (827)
Q Consensus       259 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (827)
                      .+..+..++.++.++++.|.+......    ....+.+....+.+ ..++..  ..++.|+.+++++|.... +|.   .
T Consensus       154 ~~~~l~~l~~l~~L~l~~n~~~~~~~~----~~~~~~l~~~~~~~-~~~~~~--~~l~~L~~l~l~~n~~~~-~~~---~  222 (353)
T d1jl5a_         154 ELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNIL-EELPEL--QNLPFLTTIYADNNLLKT-LPD---L  222 (353)
T ss_dssp             SCCCCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCC-SSCCCC--TTCTTCCEEECCSSCCSS-CCS---C
T ss_pred             ccccccccccceecccccccccccccc----cccccccccccccc-cccccc--cccccccccccccccccc-ccc---c
Confidence            344566777778888877776543211    12233444443332 222221  256777888887776653 332   2


Q ss_pred             CCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccc
Q 047196          339 ASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTG  418 (827)
Q Consensus       339 l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  418 (827)
                      ..++..+++.++.+.....                    ....+...++..+.+.+. +..   .......++..|.+.+
T Consensus       223 ~~~l~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~~~~~~l-~~l---~~~~~~~~~~~~~~~~  278 (353)
T d1jl5a_         223 PPSLEALNVRDNYLTDLPE--------------------LPQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS  278 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC--------------------CCTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE
T ss_pred             ccccccccccccccccccc--------------------cccccccccccccccccc-ccc---cchhcccccccCcccc
Confidence            3456677777766543211                    011344555555554431 110   1233455555555543


Q ss_pred             cccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCccccc
Q 047196          419 SIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWN  498 (827)
Q Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  498 (827)
                      .    ...+++|++|+|++|+++ .+|..   +++|+.|+|++|+++ .+|..   +++|++|++++|+++. +|.....
T Consensus       279 ~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp~~~~~  345 (353)
T d1jl5a_         279 L----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIPES  345 (353)
T ss_dssp             E----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CCCCCTT
T ss_pred             c----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC-CCccccc
Confidence            2    233566777777777776 45543   456777777777776 45543   3567777777777763 4544333


Q ss_pred             cc
Q 047196          499 LK  500 (827)
Q Consensus       499 l~  500 (827)
                      +.
T Consensus       346 L~  347 (353)
T d1jl5a_         346 VE  347 (353)
T ss_dssp             CC
T ss_pred             cC
Confidence            33

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6e-21  Score=205.63  Aligned_cols=146  Identities=25%  Similarity=0.397  Sum_probs=110.7

Q ss_pred             hhcccccceEecCCceEEEEEEe-cCCcEEEEEEEcccc--hHHHHHHHHHHHHHHhcCCCCceEEEeeeecCC------
Q 047196          674 TEKFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNC--AMALKSFEAECEVMKNIRHRNHVKRISSCSNED------  744 (827)
Q Consensus       674 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~Ei~~l~~l~H~niv~~~~~~~~~~------  744 (827)
                      .++|+..+.||+|+||+||+|+. .+|+.||||+++...  ....+++.+|++++++++|||+|++++++....      
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            46799999999999999999985 579999999997542  334567899999999999999999998875321      


Q ss_pred             -ceeeeeecc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eecccccccC
Q 047196          745 -FKALDCLHS-------TNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLTG  806 (827)
Q Consensus       745 -~~~l~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~~  806 (827)
                       ..+++++..       ....++..+...++.|++.||+|||   +++|+||||||+|||          |||+|.....
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH---~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCCccccccccccccccccchhcccCc
Confidence             122222221       1235778888899999999999996   568999999999998          8888865432


Q ss_pred             CCccccccceeccccccccc
Q 047196          807 DRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       807 ~~~~~~~~~~gt~~Y~APE~  826 (827)
                      .    .....||+.|+|||+
T Consensus       174 ~----~~~~~g~~~y~apE~  189 (348)
T d2gfsa1         174 E----MTGYVATRWYRAPEI  189 (348)
T ss_dssp             G----GSSSCHHHHTSCHHH
T ss_pred             c----cccccccccccCchh
Confidence            2    233458999999996

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.4e-21  Score=202.78  Aligned_cols=149  Identities=26%  Similarity=0.320  Sum_probs=115.2

Q ss_pred             hcccccceEecCCceEEEEEEe----cCCcEEEEEEEcccc----hHHHHHHHHHHHHHHhcCC-CCceEEEeeeecCCc
Q 047196          675 EKFSKENLIGVGSFGSVYKGRL----HDGIEVAIKVFHQNC----AMALKSFEAECEVMKNIRH-RNHVKRISSCSNEDF  745 (827)
Q Consensus       675 ~~~~~~~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~Ei~~l~~l~H-~niv~~~~~~~~~~~  745 (827)
                      ++|+..+.||+|+||+||+|+.    .+|+.||||++....    ....+.+.+|++++++++| ||||++++++.+...
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            6799999999999999999975    248999999986432    2234568899999999987 799999999888776


Q ss_pred             eeeeeeccCC----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee----------eeccccccc
Q 047196          746 KALDCLHSTN----------CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF----------DFGIGRLLT  805 (827)
Q Consensus       746 ~~l~~l~~~~----------~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl----------DFGla~~~~  805 (827)
                      .++...+...          ..........++.|++.|++|+|   +.+|+||||||+||+          |||+|+.+.
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~  180 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFV  180 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEECC
T ss_pred             eeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhh---cCCEEeccCCccceeecCCCCEEEeeccchhhhc
Confidence            5554333222          23445556778899999999996   578999999999998          999998765


Q ss_pred             CCCccccccceeccccccccc
Q 047196          806 GDRSMIQTETLVTIGYMAPGL  826 (827)
Q Consensus       806 ~~~~~~~~~~~gt~~Y~APE~  826 (827)
                      ...........||+.|+|||+
T Consensus       181 ~~~~~~~~~~~g~~~~~~pe~  201 (322)
T d1vzoa_         181 ADETERAYDFCGTIEYMAPDI  201 (322)
T ss_dssp             GGGGGGGCGGGSCCTTCCHHH
T ss_pred             ccccccccccccccccchhHH
Confidence            433333334558999999996

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=5.5e-18  Score=181.87  Aligned_cols=199  Identities=25%  Similarity=0.243  Sum_probs=108.4

Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEee
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLG  275 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  275 (827)
                      ++++|||++|.++ .+|+.   +++|++|++++|+|+ .+|..+   .+|+.|++++|+++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            5667777777665 35543   356677777777776 455543   45666777777665 23321   1357777777


Q ss_pred             cccCcccCchhhhcCCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceee
Q 047196          276 FNNLVGVVPAAIFNMSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGI  355 (827)
Q Consensus       276 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  355 (827)
                      +|.++. +|. +..+++|+.|+++++.+.....     ....+..+.+..+...  .+..+..++.++.++++.|.+...
T Consensus       107 ~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         107 NNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SSCCSS-CCC-CTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccc-ccc-hhhhccceeecccccccccccc-----ccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            777664 343 4566667777766666543221     2345666666555443  234456667777777777665432


Q ss_pred             cCCCccCCCCCCcccCCCchhcccccccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEEC
Q 047196          356 IPNTIGLTGNPLDGVLPTSIGNLSMSLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYL  435 (827)
Q Consensus       356 ~p~~~~l~~n~l~g~~p~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  435 (827)
                      ...                    ....+.+...++.+. .+| .+..++.|+.+++++|.... +|.   ...++..+.+
T Consensus       178 ~~~--------------------~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~  231 (353)
T d1jl5a_         178 PDL--------------------PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNV  231 (353)
T ss_dssp             CCC--------------------CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEEC
T ss_pred             ccc--------------------ccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccc
Confidence            110                    012334444444443 222 23456666666666665542 222   2344555666


Q ss_pred             CCCCCC
Q 047196          436 PFNKLA  441 (827)
Q Consensus       436 s~N~l~  441 (827)
                      .+|.+.
T Consensus       232 ~~~~~~  237 (353)
T d1jl5a_         232 RDNYLT  237 (353)
T ss_dssp             CSSCCS
T ss_pred             cccccc
Confidence            665554

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.2e-19  Score=194.44  Aligned_cols=145  Identities=19%  Similarity=0.318  Sum_probs=108.6

Q ss_pred             cccccceEecCCceEEEEEEe-cCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCC-----------CCceEEEeeeecC
Q 047196          676 KFSKENLIGVGSFGSVYKGRL-HDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRH-----------RNHVKRISSCSNE  743 (827)
Q Consensus       676 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H-----------~niv~~~~~~~~~  743 (827)
                      +|+..++||+|+||+||+|+. .+|+.||||+++... ...+.+.+|++++++++|           +|+|++++++...
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            488899999999999999986 579999999997653 334678899999988865           6788888877543


Q ss_pred             C--ceee--eeec-----------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee------------
Q 047196          744 D--FKAL--DCLH-----------STNCSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF------------  796 (827)
Q Consensus       744 ~--~~~l--~~l~-----------~~~~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl------------  796 (827)
                      .  ...+  ....           .............++.+++.|++|||+  ..+|+||||||+|||            
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~~~~  170 (362)
T d1q8ya_          93 GPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQ  170 (362)
T ss_dssp             ETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTEEE
T ss_pred             cccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCcccccce
Confidence            2  1111  1111           122345667778899999999999984  468999999999998            


Q ss_pred             ----eecccccccCCCccccccceecccccccccC
Q 047196          797 ----DFGIGRLLTGDRSMIQTETLVTIGYMAPGLL  827 (827)
Q Consensus       797 ----DFGla~~~~~~~~~~~~~~~gt~~Y~APE~l  827 (827)
                          |||.|+......    ...+||+.|+|||++
T Consensus       171 ~kl~dfg~s~~~~~~~----~~~~gt~~y~aPE~~  201 (362)
T d1q8ya_         171 IKIADLGNACWYDEHY----TNSIQTREYRSPEVL  201 (362)
T ss_dssp             EEECCCTTCEETTBCC----CSCCSCGGGCCHHHH
T ss_pred             eeEeeccccccccccc----ccccccccccChhhc
Confidence                788876543222    235699999999963

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.3e-20  Score=204.65  Aligned_cols=382  Identities=21%  Similarity=0.188  Sum_probs=193.0

Q ss_pred             ccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeecccccc----cCCccCCCCCCCc
Q 047196          147 KLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHG----QIPLALSKCKRLQ  222 (827)
Q Consensus       147 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~  222 (827)
                      +|++||+++|++++..                        =..+...++++++|+|++|.++.    .++..+..+++|+
T Consensus         3 ~l~~ld~~~~~i~~~~------------------------~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~   58 (460)
T d1z7xw1           3 DIQSLDIQCEELSDAR------------------------WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA   58 (460)
T ss_dssp             EEEEEEEESCCCCHHH------------------------HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCC
T ss_pred             CCCEEEeeCCcCChHH------------------------HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCC
Confidence            5778888888876421                        01223334567777777776652    3344566778888


Q ss_pred             EEEccCCCCccc----CCCcCc-CCccccEEEccccccccc----ccccccCcCCCcEEEeecccCcccCchhhhc----
Q 047196          223 LLNLGFKKLSGA----IPKEIS-NLTILRKISLRNNKLRGE----IPHEIGYLPNLENLVLGFNNLVGVVPAAIFN----  289 (827)
Q Consensus       223 ~L~L~~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----  289 (827)
                      +|+|++|.++..    +...+. ...+|++|+|++|+++..    ++..+..+++|++|+|++|.++......+..    
T Consensus        59 ~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~  138 (460)
T d1z7xw1          59 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD  138 (460)
T ss_dssp             EEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             EEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccc
Confidence            888888877521    222222 234688888888888643    4556777888888888888876432222211    


Q ss_pred             -CCCccEEEecCCccccccChhhhcCCCCccEEeCcCCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCc
Q 047196          290 -MSTVKKIYLLDNSLLGSFSLGIDLSLPNVERLNLGLNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLD  368 (827)
Q Consensus       290 -l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~  368 (827)
                       .................-..                     ..-..+.....++.++++.+......-.          
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~ls~~~~~~~~~~----------  187 (460)
T d1z7xw1         139 PQCRLEKLQLEYCSLSAASCE---------------------PLASVLRAKPDFKELTVSNNDINEAGVR----------  187 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHH---------------------HHHHHHHHCTTCCEEECCSSBCHHHHHH----------
T ss_pred             cccccccccccccccchhhhc---------------------cccccccccccccccccccccccccccc----------
Confidence             11122222222211110000                     0001112223344444443332210000          


Q ss_pred             ccCCCchhcccccccEEEccCCcCccc----cCccccCCCCCceEeccCccccc-----cccccccCCCCCcEEECCCCC
Q 047196          369 GVLPTSIGNLSMSLENIYISNCNIGGS----IPQLISNLSNLLLLDLEGNKLTG-----SIPVTFGRLQKLQGLYLPFNK  439 (827)
Q Consensus       369 g~~p~~~~~~~~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g-----~~p~~~~~l~~L~~L~Ls~N~  439 (827)
                       .....+.........+++..+.+...    ....+...+.++.+++++|++..     ..+........++.+++++|.
T Consensus       188 -~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~  266 (460)
T d1z7xw1         188 -VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  266 (460)
T ss_dssp             -HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             -ccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccc
Confidence             00000000011233444444433211    11122334555566666655432     122233445566666666666


Q ss_pred             CCCCC----CccccccccccEEecCCCcccccCCcc-----ccCCCCCCccccCCCcccccCCcc----ccccccccccC
Q 047196          440 LAGSI----PDQLCHLARLNTLGLAGNKFSGSIPSC-----LGNLTSLRSPDLGSNRLTSVLPST----FWNLKDILFFD  506 (827)
Q Consensus       440 l~g~~----p~~~~~l~~L~~L~Ls~N~l~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~Ld  506 (827)
                      +....    ...+...+.++.+++++|.++......     ......|+.+++++|.++......    +....+|+.||
T Consensus       267 i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~  346 (460)
T d1z7xw1         267 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ  346 (460)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhh
Confidence            54221    122334556666666666664321111     112345677777777665432222    23345677777


Q ss_pred             CCCCCCCCC----Cccccc-ccccCceEEcccceeeec----ccccccCCCCCCEEECCCCcceeecCC--------CCc
Q 047196          507 LSSNSLDGP----LSLDIG-NLRVVIGINLSRNNFSGD----IPSTIGDLKDLQNISLACNGLEGLIPE--------SFG  569 (827)
Q Consensus       507 Ls~N~l~g~----~p~~~~-~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~--------~~~  569 (827)
                      |++|++++.    ++..+. ..+.|+.|+|++|+|+..    ++..+..+++|++|||++|+++.....        .-.
T Consensus       347 Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~  426 (460)
T d1z7xw1         347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC  426 (460)
T ss_dssp             CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTC
T ss_pred             eeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCC
Confidence            777777542    222332 345677788888887643    455566677888888888887653221        122


Q ss_pred             CCceEeCcCCcCeec
Q 047196          570 YLTELNLSFNKLEGE  584 (827)
Q Consensus       570 ~L~~L~ls~N~l~g~  584 (827)
                      .|+.|++++|.+..+
T Consensus       427 ~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         427 LLEQLVLYDIYWSEE  441 (460)
T ss_dssp             CCCEEECTTCCCCHH
T ss_pred             ccCEEECCCCCCCHH
Confidence            578888888877643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8.9e-20  Score=203.39  Aligned_cols=133  Identities=20%  Similarity=0.266  Sum_probs=63.7

Q ss_pred             cccEEEccCCcCccc----cCccccCCCCCceEeccCccccccccccc-----cCCCCCcEEECCCCCCCCCCCccc---
Q 047196          381 SLENIYISNCNIGGS----IPQLISNLSNLLLLDLEGNKLTGSIPVTF-----GRLQKLQGLYLPFNKLAGSIPDQL---  448 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~-----~~l~~L~~L~Ls~N~l~g~~p~~~---  448 (827)
                      .++.+++++|.+...    ....+...+.++.+++++|.+.......+     .....|+.+++++|.++......+   
T Consensus       256 ~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~  335 (460)
T d1z7xw1         256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  335 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccc
Confidence            466666666666532    22233445666667777666643221111     223456666666666653322222   


Q ss_pred             -cccccccEEecCCCccccc----CCcccc-CCCCCCccccCCCccccc----CCccccccccccccCCCCCCCC
Q 047196          449 -CHLARLNTLGLAGNKFSGS----IPSCLG-NLTSLRSPDLGSNRLTSV----LPSTFWNLKDILFFDLSSNSLD  513 (827)
Q Consensus       449 -~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~  513 (827)
                       ...++|++|+|++|+++..    ++..+. ..+.|++|+|++|.|+..    ++..+..+++|++|||++|+++
T Consensus       336 ~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence             2334566666666665432    222222 234455555555555431    2223333444444445444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=2.3e-18  Score=168.33  Aligned_cols=132  Identities=25%  Similarity=0.315  Sum_probs=99.0

Q ss_pred             ccEEEccCCcCccccCccccCCCCCceEeccCccccccc-cccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSI-PVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       382 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      .+.++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|.++++|+.|+|++|.+.+..+..+..+++|+.|+|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            567888888887 5665542  57888888888887644 5567778888888888888887777777778888888888


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCC
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPL  516 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  516 (827)
                      +|++++..|..|.++++|++|+|++|+|++..|.+|..+++|++|+|++|.+....
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            88887766777777888888888888887777777777777777777777776543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=3.9e-18  Score=166.67  Aligned_cols=110  Identities=29%  Similarity=0.397  Sum_probs=57.3

Q ss_pred             cccEEEccCCcCcccc-CccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEec
Q 047196          381 SLENIYISNCNIGGSI-PQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  459 (827)
                      ++++|+|++|+|++.+ +..|.++++|+.|+|++|++.+.++..|..+++|++|+|++|++++..|..|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            4555555555554422 334455555555555555555555555555555555555555555444445555555555555


Q ss_pred             CCCcccccCCccccCCCCCCccccCCCcccc
Q 047196          460 AGNKFSGSIPSCLGNLTSLRSPDLGSNRLTS  490 (827)
Q Consensus       460 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  490 (827)
                      ++|+|++..|..|..+++|++|+|++|.+..
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCccccccCHHHhcCCccccccccccccccc
Confidence            5555554444455555555555555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6e-17  Score=164.34  Aligned_cols=78  Identities=13%  Similarity=-0.009  Sum_probs=37.2

Q ss_pred             cccEEEccCCcCccccCccccCCCCCc-eEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEec
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLL-LLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGL  459 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  459 (827)
                      .++.|++++|+++...+..+. ..+++ .+++++|+++...+..|.++++|++|+|++|+++...+..|.+++.|+++++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            345555555555533333322 23332 3344555555443444555666666666666655333334444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.2e-17  Score=164.26  Aligned_cols=217  Identities=18%  Similarity=0.168  Sum_probs=105.6

Q ss_pred             cEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcccCc-hhhhcCCCccEEEecC
Q 047196          222 QLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVGVVP-AAIFNMSTVKKIYLLD  300 (827)
Q Consensus       222 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~  300 (827)
                      +.++.+++.++ .+|..+.  +++++|+|++|+|+...+..|.++++|++|++++|.+...+| ..|.            
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~------------   75 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS------------   75 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc------------
Confidence            45666666666 4555442  356677777777664444456667777777777766654433 2333            


Q ss_pred             CccccccChhhhcCCCCccEEeCc-CCccccccCccccCCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchhccc
Q 047196          301 NSLLGSFSLGIDLSLPNVERLNLG-LNRFSGTIPSFITNASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIGNLS  379 (827)
Q Consensus       301 n~l~~~~~~~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~~~~  379 (827)
                                   .+++++++.+. .|++....+..+.++++|+.+++++|.+....+.              ..+..+.
T Consensus        76 -------------~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~--------------~~~~~l~  128 (242)
T d1xwdc1          76 -------------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV--------------HKIHSLQ  128 (242)
T ss_dssp             -------------SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCC--------------TTTCBSS
T ss_pred             -------------cccccccccccccccccccccccccccccccccccchhhhcccccc--------------ccccccc
Confidence                         34455555443 3455555556666677777777766665422110              0011111


Q ss_pred             ccccEEEccCCcCccccCccccCCC-CCceEeccCccccccccccccCCCCCc-EEECCCCCCCCCCCccccccccccEE
Q 047196          380 MSLENIYISNCNIGGSIPQLISNLS-NLLLLDLEGNKLTGSIPVTFGRLQKLQ-GLYLPFNKLAGSIPDQLCHLARLNTL  457 (827)
Q Consensus       380 ~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L  457 (827)
                       .+..+...++++....+..|..++ .++.|++++|+++...+..|. ..+++ .+++++|+++...+..|.++++|++|
T Consensus       129 -~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         129 -KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             -CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             -ccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEE
Confidence             344444455555544444444443 455566666665543333332 22222 22344444443222334444445555


Q ss_pred             ecCCCcccccCCccccCCCCCCccc
Q 047196          458 GLAGNKFSGSIPSCLGNLTSLRSPD  482 (827)
Q Consensus       458 ~Ls~N~l~~~~p~~~~~l~~L~~L~  482 (827)
                      ++++|+++...+..|.+++.|++++
T Consensus       207 ~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         207 DISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             ECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             ECCCCcCCccCHHHHcCCcccccCc
Confidence            5555444422222334444444333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=6.3e-17  Score=162.51  Aligned_cols=162  Identities=22%  Similarity=0.349  Sum_probs=72.5

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|++|++++|++++..|  +..+++|+.+++++|.++. ++ .+.++++|+.+++++|...+..  .+...+.++.+.++
T Consensus        64 ~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~  137 (227)
T d1h6ua2          64 NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLD  137 (227)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECC
T ss_pred             CCcEeecCCceeecccc--ccccccccccccccccccc-cc-cccccccccccccccccccccc--hhccccchhhhhch
Confidence            34444444444443222  4444455555555544442 21 2444455555555554444321  13334444555555


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      ++.+....  .+.++++|+.|++++|.+....  .+.++++|+.|||++|++++. + .++++++|++|++++|++++. 
T Consensus       138 ~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-  210 (227)
T d1h6ua2         138 LNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-  210 (227)
T ss_dssp             SSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             hhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-
Confidence            55443221  2344445555555555444322  144455555555555555432 1 144555555555555555532 


Q ss_pred             cccccCCCCCCEEECC
Q 047196          541 PSTIGDLKDLQNISLA  556 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls  556 (827)
                      | .++++++|+.|+++
T Consensus       211 ~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         211 S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             G-GGTTCTTCCEEEEE
T ss_pred             c-ccccCCCCCEEEee
Confidence            2 14555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.8e-16  Score=159.10  Aligned_cols=184  Identities=21%  Similarity=0.332  Sum_probs=153.6

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      +|+.|++.+|+++. ++ .+..+++|+.|++++|++++..|  +..+++|+++++++|.++. ++ .+.++++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-cc-cccccccccccccc
Confidence            78889999998884 44 58899999999999999987654  8899999999999999873 43 57889999999999


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|...+..  .+...+.++.++++++.+....  .+.++++|+.|++++|.+++..+  ++++++|+.||+++|++++ +
T Consensus       116 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~-l  188 (227)
T d1h6ua2         116 STQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-I  188 (227)
T ss_dssp             TSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C
T ss_pred             cccccccc--hhccccchhhhhchhhhhchhh--hhccccccccccccccccccchh--hcccccceecccCCCccCC-C
Confidence            99987543  3667788999999999887644  36788899999999999986543  7889999999999999986 4


Q ss_pred             cccccCCCCCCEEECCCCcceeecC-CCCcCCceEeCcC
Q 047196          541 PSTIGDLKDLQNISLACNGLEGLIP-ESFGYLTELNLSF  578 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~L~~L~ls~  578 (827)
                      | .++++++|+.|+|++|++++..| ..+.+|+.|++++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            4 38899999999999999997655 4567899999873

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.9e-16  Score=156.83  Aligned_cols=162  Identities=29%  Similarity=0.390  Sum_probs=108.8

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      ++++|++++|.++.. + .+..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+.++++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            566677777766643 2 2566777777777777777543  25667777777777777764 33 46667777777777


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|.+..  ...+..++.++.+++++|.+++  +..+..+++|+.+++++|++++..  .++++++|+.|++++|+|+. +
T Consensus       121 ~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l  193 (210)
T d1h6ta2         121 HNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-L  193 (210)
T ss_dssp             TSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-C
T ss_pred             cccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-C
Confidence            777652  2346667777777777777764  234566777777777777776533  26677777777777777763 4


Q ss_pred             cccccCCCCCCEEECC
Q 047196          541 PSTIGDLKDLQNISLA  556 (827)
Q Consensus       541 p~~~~~l~~L~~L~Ls  556 (827)
                      | .+.++++|+.|+|+
T Consensus       194 ~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             G-GGTTCTTCSEEEEE
T ss_pred             h-hhcCCCCCCEEEcc
Confidence            4 47777777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=3.8e-16  Score=154.55  Aligned_cols=162  Identities=23%  Similarity=0.278  Sum_probs=70.9

Q ss_pred             CCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEE
Q 047196          122 SSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLF  201 (827)
Q Consensus       122 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~  201 (827)
                      .+|++|++++|.++.. + .+..+++|++|+|++|++++..+  +..+++|++|++++|++++ +|. +.. +++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~~-l~~-l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKD-LKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTT-CTTCCEEE
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-ccc-ccc-cccccccc
Confidence            3444444444444422 1 24444444444444444443221  2333444444444444332 221 111 22444444


Q ss_pred             eecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccCcc
Q 047196          202 LAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNLVG  281 (827)
Q Consensus       202 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  281 (827)
                      +++|.+..  ...+.++++|+.++++.|.+++  +..+..+++|+++++++|++++. + .++++++|++|+|++|+++.
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC
Confidence            44444332  1234445555555555555543  22344455555555555555432 2 24555555555555555543


Q ss_pred             cCchhhhcCCCccEEEe
Q 047196          282 VVPAAIFNMSTVKKIYL  298 (827)
Q Consensus       282 ~~p~~~~~l~~L~~L~l  298 (827)
                       +| .+.++++|++|++
T Consensus       193 -l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             -CG-GGTTCTTCSEEEE
T ss_pred             -Ch-hhcCCCCCCEEEc
Confidence             22 3444444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.4e-16  Score=151.52  Aligned_cols=162  Identities=22%  Similarity=0.363  Sum_probs=88.8

Q ss_pred             CCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccE
Q 047196          120 NLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKV  199 (827)
Q Consensus       120 ~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~  199 (827)
                      .+.++++|++++|+++. + +.+..+++|++|||++|++++..|  +.++++|++|+++.|.+. .+|. + ..+++|+.
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~~-l-~~l~~L~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLTG  110 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCSE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-cccc-c-cccccccc
Confidence            34455555555555542 2 234455555555555555554322  444555555555554443 2332 2 22346666


Q ss_pred             EEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEcccccccccccccccCcCCCcEEEeecccC
Q 047196          200 LFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIPHEIGYLPNLENLVLGFNNL  279 (827)
Q Consensus       200 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  279 (827)
                      |++++|.+...  ..+..+++|+.|++++|++.. + +.+..+++|++|++++|++++. + .++++++|++|++++|++
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCC
Confidence            66666655432  235566777777777776653 2 2466677777777777777643 2 366777777777777776


Q ss_pred             cccCchhhhcCCCccEE
Q 047196          280 VGVVPAAIFNMSTVKKI  296 (827)
Q Consensus       280 ~~~~p~~~~~l~~L~~L  296 (827)
                      +.. + .+..+++|++|
T Consensus       185 ~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CCC-G-GGGGCTTCSEE
T ss_pred             CCC-c-cccCCCCCCcC
Confidence            652 2 35555555543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.64  E-value=2.9e-16  Score=152.95  Aligned_cols=122  Identities=14%  Similarity=0.169  Sum_probs=91.1

Q ss_pred             ccceEecCCceEEEEEEecCCcEEEEEEEcccc------------------hHHHHHHHHHHHHHHhcCCCCceEEEeee
Q 047196          679 KENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNC------------------AMALKSFEAECEVMKNIRHRNHVKRISSC  740 (827)
Q Consensus       679 ~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~------------------~~~~~~~~~Ei~~l~~l~H~niv~~~~~~  740 (827)
                      ..+.||+|+||.||+|+..+|+.||||+++...                  ......+.+|.+.+.+++|.+++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            467899999999999998889999999875311                  01123466789999999999999877553


Q ss_pred             ecCCceeeeeeccCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEccCCCccee---------eeccccccc
Q 047196          741 SNEDFKALDCLHSTN-CSLNIFDKLNIMIDVASALEYLHFSHSTPVIHCDLKPKNVF---------DFGIGRLLT  805 (827)
Q Consensus       741 ~~~~~~~l~~l~~~~-~~l~~~~~~~i~~~ia~~L~~Lh~~h~~~iiHrDlK~~NIl---------DFGla~~~~  805 (827)
                        .....+++..... ..+.......++.+++++++|||   +.+|+||||||+|||         |||+|+...
T Consensus        84 --~~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiKP~NILv~~~~~~liDFG~a~~~~  153 (191)
T d1zara2          84 --GNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEEGIWIIDFPQSVEVG  153 (191)
T ss_dssp             --TTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETTEEEECCCTTCEETT
T ss_pred             --CCEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHh---hCCEEEccCChhheeeeCCCEEEEECCCcccCC
Confidence              3344444443321 22344455679999999999996   568999999999998         999997654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.2e-15  Score=149.51  Aligned_cols=159  Identities=26%  Similarity=0.407  Sum_probs=101.3

Q ss_pred             cccEEEccCCcCccccCccccCCCCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          381 SLENIYISNCNIGGSIPQLISNLSNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      ++++|++++|+++. ++ .+..+++|++|++++|++++..|  ++++++|+.|++++|.+.. ++ .+.+++.|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccccc
Confidence            45666666666653 22 35667777777777777765433  6677777777777777653 33 36667777777777


Q ss_pred             CCcccccCCccccCCCCCCccccCCCcccccCCccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeeecc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSGDI  540 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i  540 (827)
                      +|.+...  ..+..+++|+.|++++|++...  +.+..+++|+.|++++|++++..  .++++++|+.|++++|+++. +
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i  187 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-I  187 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-C
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-C
Confidence            7776532  2356677777777777776542  24666677777777777776532  25666777777777777664 3


Q ss_pred             cccccCCCCCCEE
Q 047196          541 PSTIGDLKDLQNI  553 (827)
Q Consensus       541 p~~~~~l~~L~~L  553 (827)
                      | .++++++|+.|
T Consensus       188 ~-~l~~L~~L~~L  199 (199)
T d2omxa2         188 S-VLAKLTNLESL  199 (199)
T ss_dssp             G-GGGGCTTCSEE
T ss_pred             c-cccCCCCCCcC
Confidence            3 36666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.7e-14  Score=149.48  Aligned_cols=101  Identities=15%  Similarity=0.160  Sum_probs=47.1

Q ss_pred             cEEEcCCCCCCCCcchhHhhccccccEEEeecccccccCCccCCCCCCCcEEEccCCCCccc-CCCcCcCCccccEEEcc
Q 047196          173 LDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGA-IPKEISNLTILRKISLR  251 (827)
Q Consensus       173 ~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls  251 (827)
                      +.+||+++.+.+.....+..  .....+.++......... ......+|++||++++.++.. ++..+.++++|++|+|+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788777665333333322  134455554444332211 222334555555555544322 22223445555555555


Q ss_pred             cccccccccccccCcCCCcEEEeec
Q 047196          252 NNKLRGEIPHEIGYLPNLENLVLGF  276 (827)
Q Consensus       252 ~N~l~~~~p~~~~~l~~L~~L~Ls~  276 (827)
                      +|.++...+..++.+++|++|++++
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccc
Confidence            5555444444455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.3e-14  Score=143.87  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=63.5

Q ss_pred             ceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccccccEEEeeccccccc-CCccCCCCCCCcEEEcc
Q 047196          149 KFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLHYLKVLFLAKNMFHGQ-IPLALSKCKRLQLLNLG  227 (827)
Q Consensus       149 ~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~  227 (827)
                      +.|||+++.+.......+.. .....+++........+.. .. ...+|++||++++.++.. ++..+.++++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~-~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hc-cCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35666666664332222211 1234445444333221111 11 123666777766665533 33345666667777777


Q ss_pred             CCCCcccCCCcCcCCccccEEEcccc-ccccc-ccccccCcCCCcEEEeecc
Q 047196          228 FKKLSGAIPKEISNLTILRKISLRNN-KLRGE-IPHEIGYLPNLENLVLGFN  277 (827)
Q Consensus       228 ~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N  277 (827)
                      ++.++...+..++.+++|++|+++++ .++.. +..-...+++|++|+++++
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            66666655566666666777777664 34321 1222344566666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.1e-14  Score=131.41  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             ccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCcccccCCcccccccccc
Q 047196          424 FGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNRLTSVLPSTFWNLKDIL  503 (827)
Q Consensus       424 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  503 (827)
                      |.++.++++|+|++|+++ .+|..+..+++|+.|+|++|+++. ++ .+..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            334445555555555554 234444455555555555555552 32 355556666666666666555444455566666


Q ss_pred             ccCCCCCCCCCCCc-ccccccccCceEEcccceeeecc---cccccCCCCCCEEE
Q 047196          504 FFDLSSNSLDGPLS-LDIGNLRVVIGINLSRNNFSGDI---PSTIGDLKDLQNIS  554 (827)
Q Consensus       504 ~LdLs~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~i---p~~~~~l~~L~~L~  554 (827)
                      .|++++|+++.... ..+..++.|+.|++++|.++...   +..+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666666653211 24556666666666666665321   12356666677665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3e-13  Score=120.84  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             CEEECCCCCCCccCChhhhhccccceEEecCCCCC
Q 047196          125 TTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLS  159 (827)
Q Consensus       125 ~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~  159 (827)
                      |+|||++|+++ .+| .+..+++|++||+++|.|+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~   33 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR   33 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC
Confidence            45666666665 333 3556666666666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.5e-14  Score=130.87  Aligned_cols=129  Identities=18%  Similarity=0.104  Sum_probs=81.1

Q ss_pred             ccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhccc
Q 047196          116 PQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYLH  195 (827)
Q Consensus       116 ~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~~  195 (827)
                      +.+.+...|++|||++|+|+ .+|..+..+++|++||||+|+++.. + .+..+++|++|++++|++             
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i-------------   75 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRI-------------   75 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCC-------------
T ss_pred             HhccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccc-------------
Confidence            34677788899999999988 4566677888999999999988732 2 244444444444444444             


Q ss_pred             cccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCC-CcCcCCccccEEEccccccccccc----ccccCcCCCc
Q 047196          196 YLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIP-KEISNLTILRKISLRNNKLRGEIP----HEIGYLPNLE  270 (827)
Q Consensus       196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~  270 (827)
                                  +...+..+..+++|+.|++++|+++.... ..+..+++|++|++++|.++. .|    ..+..+++|+
T Consensus        76 ------------~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          76 ------------CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             ------------CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCS
T ss_pred             ------------cCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcC
Confidence                        43333333445555555666555543211 345666777777777777653 33    2466778888


Q ss_pred             EEE
Q 047196          271 NLV  273 (827)
Q Consensus       271 ~L~  273 (827)
                      +||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=3.7e-13  Score=120.22  Aligned_cols=100  Identities=26%  Similarity=0.361  Sum_probs=47.2

Q ss_pred             eEeccCccccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccCCCc
Q 047196          408 LLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLGSNR  487 (827)
Q Consensus       408 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  487 (827)
                      +|||++|+++. ++ .+..+++|++|++++|+++ .+|+.+..+++|+.|++++|++++ +| .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            45555555552 22 2455555555555555554 344445555555555555555542 22 24445555555555555


Q ss_pred             ccccCC-ccccccccccccCCCCCCC
Q 047196          488 LTSVLP-STFWNLKDILFFDLSSNSL  512 (827)
Q Consensus       488 l~~~~p-~~~~~l~~L~~LdLs~N~l  512 (827)
                      ++...+ ..+..+++|+.|++++|.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            443221 2333334444444444433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=5.7e-14  Score=150.03  Aligned_cols=138  Identities=20%  Similarity=0.296  Sum_probs=86.1

Q ss_pred             CCCCCcEEEccCCCCccc----CCCcCcCCccccEEEccccccccc-----ccccccCcCCCcEEEeecccCccc----C
Q 047196          217 KCKRLQLLNLGFKKLSGA----IPKEISNLTILRKISLRNNKLRGE-----IPHEIGYLPNLENLVLGFNNLVGV----V  283 (827)
Q Consensus       217 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~  283 (827)
                      ..+.|+.++++.|.++..    +...+...+.|+.|+|++|.+...     +...+...++|++|+|++|.++..    +
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            455677777777766421    222344556777777777776532     233456677777788877776543    2


Q ss_pred             chhhhcCCCccEEEecCCccccccChhh----h-cCCCCccEEeCcCCccccc----cCcccc-CCCCCcEEEcCCCcce
Q 047196          284 PAAIFNMSTVKKIYLLDNSLLGSFSLGI----D-LSLPNVERLNLGLNRFSGT----IPSFIT-NASKLVYLDMGTNSFS  353 (827)
Q Consensus       284 p~~~~~l~~L~~L~l~~n~l~~~~~~~~----~-~~l~~L~~L~L~~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~  353 (827)
                      ...+...++|++|++++|.+.+.-...+    . ...+.|++|++++|+++..    +...+. +.++|+.|++++|.+.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            3445567777788887777654322111    1 1235788899999988643    223332 5678999999999885


Q ss_pred             e
Q 047196          354 G  354 (827)
Q Consensus       354 g  354 (827)
                      .
T Consensus       316 ~  316 (344)
T d2ca6a1         316 E  316 (344)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=1.3e-13  Score=147.06  Aligned_cols=142  Identities=18%  Similarity=0.148  Sum_probs=86.4

Q ss_pred             CCccccEEEccccccccc----ccccccCcCCCcEEEeecccCccc-----CchhhhcCCCccEEEecCCccccc----c
Q 047196          241 NLTILRKISLRNNKLRGE----IPHEIGYLPNLENLVLGFNNLVGV-----VPAAIFNMSTVKKIYLLDNSLLGS----F  307 (827)
Q Consensus       241 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~  307 (827)
                      ....|+.+++++|+++..    +...+...+.|++|+|++|+++..     +...+...++|+.|++++|.+...    +
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            345678888888877532    333455667888888888887542     233456677888888888876532    1


Q ss_pred             ChhhhcCCCCccEEeCcCCccccccCcc----cc--CCCCCcEEEcCCCcceeecCCCccCCCCCCcccCCCchh-cccc
Q 047196          308 SLGIDLSLPNVERLNLGLNRFSGTIPSF----IT--NASKLVYLDMGTNSFSGIIPNTIGLTGNPLDGVLPTSIG-NLSM  380 (827)
Q Consensus       308 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~----~~--~l~~L~~L~Ls~N~l~g~~p~~~~l~~n~l~g~~p~~~~-~~~~  380 (827)
                      ...+ ...++|++|+|++|.++..-...    +.  ....|+.|++++|+++..-..           .+...+. +.+ 
T Consensus       236 ~~~l-~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~-----------~l~~~l~~~~~-  302 (344)
T d2ca6a1         236 AIAL-KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR-----------TLKTVIDEKMP-  302 (344)
T ss_dssp             HHHG-GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH-----------HHHHHHHHHCT-
T ss_pred             cccc-cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHH-----------HHHHHHHccCC-
Confidence            1122 25677888888888876542222    22  235688888888877532110           1112222 223 


Q ss_pred             cccEEEccCCcCccc
Q 047196          381 SLENIYISNCNIGGS  395 (827)
Q Consensus       381 ~L~~L~Ls~N~l~g~  395 (827)
                      +|+.|++++|++...
T Consensus       303 ~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         303 DLLFLELNGNRFSEE  317 (344)
T ss_dssp             TCCEEECTTSBSCTT
T ss_pred             CCCEEECCCCcCCCc
Confidence            688888888888664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=3.8e-13  Score=130.94  Aligned_cols=114  Identities=25%  Similarity=0.332  Sum_probs=65.8

Q ss_pred             CccccCCCCCCEEECCCCCCCccCChhhhhccccceEEecCCCCCCccccccCCCCCCcEEEcCCCCCCCCcchhHhhcc
Q 047196          115 PPQLGNLSSLTTLNLSHNKLSGDIPPSIFTMHKLKFLDFSDNQLSGSLSSVTFNLSSVLDIRLDSDKLSGELPVNICNYL  194 (827)
Q Consensus       115 ~~~l~~L~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~~~~~  194 (827)
                      +.++..|++|++|+|++|+|+ .++ .+..+++|++|+|++|.++                         .+|. +....
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-------------------------~i~~-~~~~~   92 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-------------------------KIEN-LDAVA   92 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-------------------------SCSS-HHHHH
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-------------------------cccc-ccccc
Confidence            345666777777777777776 333 4667777777777777665                         2332 12223


Q ss_pred             ccccEEEeecccccccCCccCCCCCCCcEEEccCCCCcccCCCcCcCCccccEEEccccccccccc-ccccCcCCCcEEE
Q 047196          195 HYLKVLFLAKNMFHGQIPLALSKCKRLQLLNLGFKKLSGAIPKEISNLTILRKISLRNNKLRGEIP-HEIGYLPNLENLV  273 (827)
Q Consensus       195 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~  273 (827)
                      ++|++|++++|+++..                          +.+.++++|++|++++|+++.... ..+..+++|++|+
T Consensus        93 ~~L~~L~l~~N~i~~l--------------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T d1m9la_          93 DTLEELWISYNQIASL--------------------------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             HHCCEEECSEEECCCH--------------------------HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             cccccccccccccccc--------------------------ccccccccccccccccchhccccccccccCCCccceee
Confidence            3566666666655421                          124455666666666666653211 3456666777777


Q ss_pred             eecccCccc
Q 047196          274 LGFNNLVGV  282 (827)
Q Consensus       274 Ls~N~l~~~  282 (827)
                      |++|.++..
T Consensus       147 L~~N~l~~~  155 (198)
T d1m9la_         147 LAGNPLYND  155 (198)
T ss_dssp             ECSSHHHHH
T ss_pred             cCCCccccC
Confidence            777666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=1.3e-13  Score=134.41  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=20.2

Q ss_pred             ccccccCceEEcccceeeeccc-ccccCCCCCCEEECCCCcceee
Q 047196          520 IGNLRVVIGINLSRNNFSGDIP-STIGDLKDLQNISLACNGLEGL  563 (827)
Q Consensus       520 ~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~  563 (827)
                      +..+++|+.|++++|+|+.... ..+..+++|+.|+|++|.+...
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            3344444445555554442211 2344555555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.5e-11  Score=111.12  Aligned_cols=106  Identities=21%  Similarity=0.121  Sum_probs=70.4

Q ss_pred             ccEEEccCCcCccccCccccCCCCCceEeccCc-cccccccccccCCCCCcEEECCCCCCCCCCCccccccccccEEecC
Q 047196          382 LENIYISNCNIGGSIPQLISNLSNLLLLDLEGN-KLTGSIPVTFGRLQKLQGLYLPFNKLAGSIPDQLCHLARLNTLGLA  460 (827)
Q Consensus       382 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  460 (827)
                      .+.++.+++++. ..|..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            455777777776 45666667777777777655 4666556667777777777777777776666667777777777777


Q ss_pred             CCcccccCCccccCCCCCCccccCCCccc
Q 047196          461 GNKFSGSIPSCLGNLTSLRSPDLGSNRLT  489 (827)
Q Consensus       461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  489 (827)
                      +|+++ .+|.......+|+.|+|++|.+.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            77776 34433333335777777777663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.7e-11  Score=109.90  Aligned_cols=106  Identities=20%  Similarity=0.118  Sum_probs=56.2

Q ss_pred             CceEeccCccccccccccccCCCCCcEEECCCC-CCCCCCCccccccccccEEecCCCcccccCCccccCCCCCCccccC
Q 047196          406 LLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFN-KLAGSIPDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSPDLG  484 (827)
Q Consensus       406 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  484 (827)
                      .+.++.+++.+. ..|..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+++...|..|..+++|++|||+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555554 23444555555566665444 3554334455555566666666666655445555555666666666


Q ss_pred             CCcccccCCccccccccccccCCCCCCCC
Q 047196          485 SNRLTSVLPSTFWNLKDILFFDLSSNSLD  513 (827)
Q Consensus       485 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  513 (827)
                      +|+|+...+..|..+ +|+.|+|++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccc-cccccccCCCccc
Confidence            666554433333332 4555566665553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.7e-08  Score=92.49  Aligned_cols=66  Identities=26%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             cCCCCCCccccCCCcccccC--CccccccccccccCCCCCCCCCCCcccccccccCceEEcccceeee
Q 047196          473 GNLTSLRSPDLGSNRLTSVL--PSTFWNLKDILFFDLSSNSLDGPLSLDIGNLRVVIGINLSRNNFSG  538 (827)
Q Consensus       473 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  538 (827)
                      ..+++|++|+|++|+|+..-  +..+..+++|+.|||++|.++...+........|+.|++++|.++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34555555555555555432  2334445555555555555543222222222334444555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.5e-08  Score=90.35  Aligned_cols=86  Identities=17%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             CCCceEeccCccccccccccccCCCCCcEEECCCCCCCCCC--CccccccccccEEecCCCcccccCCccccCCCCCCcc
Q 047196          404 SNLLLLDLEGNKLTGSIPVTFGRLQKLQGLYLPFNKLAGSI--PDQLCHLARLNTLGLAGNKFSGSIPSCLGNLTSLRSP  481 (827)
Q Consensus       404 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  481 (827)
                      ..+..++..+|... .++..+..+++|++|+|++|+++..-  +..+..+++|+.|+|++|+++..-+-.+.....|+.|
T Consensus        42 ~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L  120 (162)
T d1koha1          42 NIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL  120 (162)
T ss_dssp             TCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSC
T ss_pred             cchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhcccccee
Confidence            33344444443332 33334445666666666666665321  2233445555555555555542222122222344555


Q ss_pred             ccCCCcccc
Q 047196          482 DLGSNRLTS  490 (827)
Q Consensus       482 ~Ls~N~l~~  490 (827)
                      ++++|.+..
T Consensus       121 ~L~~Npl~~  129 (162)
T d1koha1         121 WLDGNSLSD  129 (162)
T ss_dssp             CCTTSTTSS
T ss_pred             ecCCCCcCc
Confidence            555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.05  E-value=0.0001  Score=67.80  Aligned_cols=40  Identities=8%  Similarity=-0.003  Sum_probs=19.9

Q ss_pred             CCCCCCCcEEEccCCCCccc-------CCCcCcCCccccEEEccccc
Q 047196          215 LSKCKRLQLLNLGFKKLSGA-------IPKEISNLTILRKISLRNNK  254 (827)
Q Consensus       215 l~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~Ls~N~  254 (827)
                      +...+.|++|++++|.+...       +...+..-+.|+.|+++.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            44445566666665543311       22223334566666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.79  E-value=0.00037  Score=63.94  Aligned_cols=65  Identities=22%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             CCCCCcEEEccCC-CCccc----CCCcCcCCccccEEEccccccccc----ccccccCcCCCcEEEeecccCcc
Q 047196          217 KCKRLQLLNLGFK-KLSGA----IPKEISNLTILRKISLRNNKLRGE----IPHEIGYLPNLENLVLGFNNLVG  281 (827)
Q Consensus       217 ~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~  281 (827)
                      +.++|+.|+|+++ .++..    +-..+...+.|++|+|++|.+...    +...+...+.|++|+|++|.++.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            4466777777653 34321    122344445566666666665422    11223334556666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.82  E-value=0.00055  Score=62.60  Aligned_cols=64  Identities=14%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             cCCCCCcEEECCC-CCCCCC----CCccccccccccEEecCCCcccccC----CccccCCCCCCccccCCCcc
Q 047196          425 GRLQKLQGLYLPF-NKLAGS----IPDQLCHLARLNTLGLAGNKFSGSI----PSCLGNLTSLRSPDLGSNRL  488 (827)
Q Consensus       425 ~~l~~L~~L~Ls~-N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l  488 (827)
                      .+.++|+.|+|++ +.++..    +-..+...+.|+.|++++|.++...    -..+...+.++.+++++|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            4556777777765 334321    1112334455666666666554321    11223334455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.77  E-value=0.0011  Score=60.56  Aligned_cols=18  Identities=17%  Similarity=0.095  Sum_probs=10.3

Q ss_pred             cCcCCccccEEEcccccc
Q 047196          238 EISNLTILRKISLRNNKL  255 (827)
Q Consensus       238 ~~~~l~~L~~L~Ls~N~l  255 (827)
                      .+...+.|+.|+++.+..
T Consensus       127 ~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         127 MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHCSSCCEEECCCSSH
T ss_pred             HHHhCCCcCEEeCcCCCC
Confidence            344556666666665543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.74  E-value=0.071  Score=51.57  Aligned_cols=76  Identities=16%  Similarity=0.039  Sum_probs=44.4

Q ss_pred             hHHHHHhhcccccceEecCCceEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcC-CCCceEEEeeeecCC
Q 047196          668 QDLFRATEKFSKENLIGVGSFGSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIR-HRNHVKRISSCSNED  744 (827)
Q Consensus       668 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~-H~niv~~~~~~~~~~  744 (827)
                      .++.+..+.|...+..+-++-+.||+... ++..+.||+...........+.+|.+.++.+. +-.+-+++.++..++
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~   83 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDG   83 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETT
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCC
Confidence            34455555665444433344568998864 45567788876544333445788998888775 222334555555444

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=91.65  E-value=0.19  Score=48.09  Aligned_cols=59  Identities=8%  Similarity=0.113  Sum_probs=37.2

Q ss_pred             EecCCc-eEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCCCc--eEEEeeeecCC
Q 047196          683 IGVGSF-GSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHRNH--VKRISSCSNED  744 (827)
Q Consensus       683 iG~G~f-g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~ni--v~~~~~~~~~~  744 (827)
                      +..|.. +.||+...++|..+.+|.-....   ...+.+|++.++.+....+  -+++.++.+++
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~---~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~   79 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEAG   79 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSS
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCccC---HhHHHHHHHHHHHHHhcCCCCCceeeeccccc
Confidence            344543 67999988878788889765432   2246778888877754333  34555555544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=86.44  E-value=0.73  Score=47.19  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=39.9

Q ss_pred             ceEecCCceEEEEEEecC-CcEEEEEEEccc-------chHHHHHHHHHHHHHHhcC-C-C-CceEEEeeeecCCceeee
Q 047196          681 NLIGVGSFGSVYKGRLHD-GIEVAIKVFHQN-------CAMALKSFEAECEVMKNIR-H-R-NHVKRISSCSNEDFKALD  749 (827)
Q Consensus       681 ~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~-------~~~~~~~~~~Ei~~l~~l~-H-~-niv~~~~~~~~~~~~~l~  749 (827)
                      +.||.|....||+.+..+ |+.|.||.-...       .+....+...|.+.++.+. + | .+.+.+.+..+.....++
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE  111 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVME  111 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEEC
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEcCCCCEEEEe
Confidence            458999999999998654 678999975321       1112234567888887663 2 2 234455544433333343


Q ss_pred             e
Q 047196          750 C  750 (827)
Q Consensus       750 ~  750 (827)
                      +
T Consensus       112 ~  112 (392)
T d2pula1         112 D  112 (392)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=82.57  E-value=0.65  Score=46.16  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             eEEEEEEecCCcEEEEEEEcccchHHHHHHHHHHHHHHhcCCC
Q 047196          689 GSVYKGRLHDGIEVAIKVFHQNCAMALKSFEAECEVMKNIRHR  731 (827)
Q Consensus       689 g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~Ei~~l~~l~H~  731 (827)
                      -.||+.+.++|+.|++|+.+... ...+++..|.+.+..+...
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~-~s~~~i~~E~~~l~~L~~~   77 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVND   77 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHT
T ss_pred             ceeEEEEcCCCCEEEEEEeCCCC-CCHHHHHHHHHHHHHHHhc
Confidence            58999999999999999976432 2345677888888877643