Citrus Sinensis ID: 047212

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPKGLIAFRKIPCRLN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcccccccEEEEEEccccccHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
rcfgeivktgnckkhnnvrqtvlpvffdispsdvrnqNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSgwalheapkgliafrkipcrln
Flexible Loop (DISEMBL)
rcfgeivktgnckkhnnvrqTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANlsgwalheapkgliafrkipcrln
Low Complexity Region (SEG)
RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPKGLIAFRKIPCRLN
Disordered region (IsUnstruct)
**FGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPKGLIAFRKIPC***
Disordered Region (DISOPRED)
RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPKGLIAFRKIPCRLN
Disordered Region (DISEMBL)
RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPKGLIAFRKIPCRLN
Disordered Region (DISPRO)
RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPKGLIAFRKIPCRLN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPKGLIAFRKIPCRLN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.741	0.060	0.479	1e-14
O82500	1095	Putative disease resistan	no	no	0.741	0.063	0.352	3e-07
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.817	0.058	0.282	2e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 4/73 (5%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFM--LEKVKK 59
           C  E+VK   CK     +QTV+P+F+D+ PS VRNQ E+FA+AF +HE ++   +E +++
Sbjct: 83  CLNELVKIMECK--TRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQR 140

Query: 60  WRAALTRAANLSG 72
           WR AL  AANL G
Sbjct: 141 WRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+++   CK+   ++  V+PVF+ + PSD+R Q   F  +F++       E+   WR
Sbjct: 81  CLDELIEIMKCKEEQGLK--VMPVFYKVDPSDIRKQTGKFGMSFLETCCGKTEERQHNWR 138

Query: 62  AALTRAANLSG 72
            ALT AAN+ G
Sbjct: 139 RALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+V+   C  + N+ Q V+P+FF +  S+V+ Q   F + F +       ++ + W+
Sbjct: 81  CLNELVEIHKC--YTNLNQMVIPIFFHVDASEVKKQTGEFGKVFEETCKAKSEDEKQSWK 138

Query: 62  AALTRAANLSGWALHEAP 79
            AL   A ++G+ L + P
Sbjct: 139 QALAAVAVMAGYDLRKWP 156

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
40644189	1147	TIR/NBS/LRR protein [Populus deltoides]	0.849	0.068	0.562	5e-18
224126833	507	tir-nbs-lrr resistance protein [Populus	0.849	0.155	0.562	1e-17
82542037	1070	TIR-NBS disease resistance-like protein	0.849	0.073	0.537	2e-17
357486483	242	TMV resistance protein N [Medicago trunc	0.752	0.289	0.608	3e-17
40644187	216	TIR/NBS/LRR protein [Populus deltoides]	0.849	0.365	0.55	5e-17
224146151	169	predicted protein [Populus trichocarpa]	0.892	0.491	0.523	1e-16
37781278	1121	nematode resistance-like protein [Solanu	0.827	0.068	0.555	2e-16
37781356	1136	nematode resistance-like protein [Solanu	0.827	0.067	0.543	2e-16
224086705	163	predicted protein [Populus trichocarpa]	0.806	0.460	0.565	2e-16
37781280	1136	nematode resistance-like protein [Solanu	0.827	0.067	0.543	2e-16

>gi|40644189|emb|CAC95124.1| TIR/NBS/LRR protein [Populus deltoides]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+V+   CKK     Q VLP+F+DI PSDVR QN +FAEAFVKHE RF  + VK+WR
Sbjct: 110 CLNELVEILKCKKRKT-GQIVLPIFYDIDPSDVRKQNGSFAEAFVKHEERFEEKLVKEWR 168

Query: 62  AALTRAANLSGWALHEAPKG 81
            AL  A NLSGW L++   G
Sbjct: 169 KALEEAGNLSGWNLNDMANG 188

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126833|ref|XP_002329484.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870164|gb|EEF07295.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+V+   CKK     Q VLP+F+DI PSDVR QN +FAEAFVKHE RF  + VK+WR
Sbjct: 37  CLNELVEILECKKRKT-GQIVLPIFYDIDPSDVRKQNGSFAEAFVKHEERFEEKLVKEWR 95

Query: 62  AALTRAANLSGWALHEAPKG 81
            AL  A NLSGW L++   G
Sbjct: 96  KALEEAGNLSGWNLNDMANG 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82542037|gb|ABB82026.1| TIR-NBS disease resistance-like protein [Populus trichocarpa]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+++   CK +    Q VLP+F+DI PSDVR QN++FAEAFVKHE RF  + VK+WR
Sbjct: 86  CLNELLEILKCK-NRKTGQIVLPIFYDIDPSDVRKQNDSFAEAFVKHEKRFEEKLVKEWR 144

Query: 62  AALTRAANLSGWALHEAPKG 81
            AL  A NLSGW L+    G
Sbjct: 145 KALEEAGNLSGWNLNAMANG 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 53/74 (71%), Gaps = 4/74 (5%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFM--LEKVKK 59
           C  E+VK   CKK     Q VLP+F+DI PSDVRNQ  ++A+AFVKHE RF   LE+V+K
Sbjct: 84  CLDELVKILECKKMRG--QIVLPIFYDIEPSDVRNQTGSYADAFVKHEERFHGNLERVQK 141

Query: 60  WRAALTRAANLSGW 73
           WR AL  AANLSGW
Sbjct: 142 WREALREAANLSGW 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40644187|emb|CAC95120.1| TIR/NBS/LRR protein [Populus deltoides]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+V+   CK+     Q VLP+F+DI PSDVR QN +FAEAFVKHE RF  + VK+WR
Sbjct: 122 CLNELVEILKCKR-KKTGQIVLPIFYDIDPSDVRKQNGSFAEAFVKHEERFEEKLVKEWR 180

Query: 62  AALTRAANLSGWALHEAPKG 81
            AL  A NLSGW L++   G
Sbjct: 181 KALEEAGNLSGWNLNDMANG 200

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146151|ref|XP_002325898.1| predicted protein [Populus trichocarpa] gi|222862773|gb|EEF00280.1| predicted protein [Populus trichocarpa]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 1/84 (1%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+++   CK +    Q VLP+F+DI PSDVR QN++FAEAFVKHE RF  + VK+WR
Sbjct: 86  CLNELLEILKCK-NRKTGQIVLPIFYDIDPSDVRKQNDSFAEAFVKHEKRFEEKLVKEWR 144

Query: 62  AALTRAANLSGWALHEAPKGLIAF 85
            AL  A NLSGW L+    G   F
Sbjct: 145 KALEEAGNLSGWNLNAMANGYAFF 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781278|gb|AAP44391.1| nematode resistance-like protein [Solanum tuberosum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 2   CFGEIVKTGNCKKHNNVR-QTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKW 60
           C  E+ K   CK   NV+ Q V+PVF+D+ PS VR Q   F EAF KHEARF  +KVKKW
Sbjct: 89  CLDELTKIIECK---NVKGQIVVPVFYDVDPSTVRRQKNIFGEAFSKHEARFEEDKVKKW 145

Query: 61  RAALTRAANLSGWALHEAPKG 81
           RAAL  AAN+SGW L     G
Sbjct: 146 RAALEEAANISGWDLPNTSNG 166

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781356|gb|AAP44393.1| nematode resistance-like protein [Solanum tuberosum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 2   CFGEIVKTGNCKKHNNVR-QTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKW 60
           C  E+ K   CK   NV+ Q V+PVF+D+ PS VR Q   F EAF KHEARF  +KV+KW
Sbjct: 89  CLDELTKIMECK---NVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKW 145

Query: 61  RAALTRAANLSGWALHEAPKG 81
           RAAL  AAN+SGW L     G
Sbjct: 146 RAALEEAANISGWDLPNTSNG 166

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086705|ref|XP_002335191.1| predicted protein [Populus trichocarpa] gi|222833034|gb|EEE71511.1| predicted protein [Populus trichocarpa]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 1/76 (1%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+V+   CK +    Q VLP+F+DI PSDVR QN +FAEAFVKHE RF  + VK+WR
Sbjct: 86  CLNELVEILQCK-NRKTNQIVLPIFYDIDPSDVRKQNGSFAEAFVKHEERFEEKLVKEWR 144

Query: 62  AALTRAANLSGWALHE 77
            AL  A NLSGW L++
Sbjct: 145 KALEEAGNLSGWNLND 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781280|gb|AAP44392.1| nematode resistance-like protein [Solanum tuberosum]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 2   CFGEIVKTGNCKKHNNVR-QTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKW 60
           C  E+ K   CK   NV+ Q V+PVF+D+ PS VR Q   F EAF KHEARF  +KV+KW
Sbjct: 89  CLDELTKIMECK---NVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKW 145

Query: 61  RAALTRAANLSGWALHEAPKG 81
           RAAL  AAN+SGW L     G
Sbjct: 146 RAALEEAANISGWDLPNTSNG 166

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.741	0.060	0.479	2.4e-13
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.752	0.058	0.438	2.4e-10
TAIR|locus:2032713	363	AT1G72900 [Arabidopsis thalian	0.752	0.192	0.458	1.6e-09
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.741	0.392	0.436	2.2e-09
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.741	0.181	0.436	1.7e-08
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.741	0.250	0.416	1.7e-08
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.827	0.055	0.345	1.8e-08
TAIR|locus:2823998	380	AT1G17615 [Arabidopsis thalian	0.741	0.181	0.394	2.2e-08
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.741	0.220	0.356	2.4e-08
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.741	0.185	0.416	3.4e-08

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 188 (71.2 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFM--LEKVKK 59
             C  E+VK   CK     +QTV+P+F+D+ PS VRNQ E+FA+AF +HE ++   +E +++
Sbjct:    83 CLNELVKIMECK--TRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQR 140

Query:    60 WRAALTRAANLSG 72
             WR AL  AANL G
Sbjct:   141 WRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 32/73 (43%), Positives = 44/73 (60%)

Query:     2 CFGEIVKTGNCKKH-NNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKW 60
             C  E+V     K H NN    V P+F  + PSD+R Q  ++A++F KH+    L K+K W
Sbjct:    88 CLDELVHI--MKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKNSHPLNKLKDW 145

Query:    61 RAALTRAANLSGW 73
             R ALT+ AN+SGW
Sbjct:   146 REALTKVANISGW 158

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032713 AT1G72900 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 33/72 (45%), Positives = 45/72 (62%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFM-LEKVKKW 60
             C  E+VK  + +K N    TV+P+F+ ++P  +R Q  + AE F KHEAR   LEKV KW
Sbjct:    81 CLDELVKIMDIQK-NKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLKW 139

Query:    61 RAALTRAANLSG 72
             R AL   A++SG
Sbjct:   140 RQALAALADISG 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/71 (43%), Positives = 42/71 (59%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
             C  E+V   + +K  ++  TV+P+F+ + P+ VR Q    AE F KH +R   EKV KWR
Sbjct:    80 CLDELVTIMDFEKKGSI--TVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWR 137

Query:    62 AALTRAANLSG 72
              ALT  A LSG
Sbjct:   138 QALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 31/71 (43%), Positives = 42/71 (59%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
             C  E+V   + +K  ++  TV+P+F+ + P+ VR Q    AE F KH +R   EKV KWR
Sbjct:    80 CLDELVTIMDFEKKGSI--TVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWR 137

Query:    62 AALTRAANLSG 72
              ALT  A LSG
Sbjct:   138 QALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFM-LEKVKKW 60
             C  E+VK  + +   ++  TV+P+F+ + P  +R Q  + AE F KHEAR    EKV  W
Sbjct:    80 CLDELVKIMDFENKGSI--TVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASW 137

Query:    61 RAALTRAANLSG 72
             R ALT  A++SG
Sbjct:   138 RRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 28/81 (34%), Positives = 48/81 (59%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFM--LEKVKK 59
             C  E+     CK  +++ + +LP+F+ + PS VR Q+++  + F +H+ RF    EKV++
Sbjct:    84 CLDELAML--CKMKSSLDRRILPIFYHVDPSHVRKQSDHIKKDFEEHQVRFSEEKEKVQE 141

Query:    60 WRAALTRAANLSGWALHEAPK 80
             WR ALT   NL+G+   +  K
Sbjct:   142 WREALTLVGNLAGYVCDKDSK 162

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2823998 AT1G17615 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
             C  E+V   + +K  ++   V+P+F+++ P+ VR Q E  A+ F KHE R   E V  WR
Sbjct:    86 CLQELVMIMDVEKKGSI--IVMPIFYNVEPAHVRRQIEQVAKQFRKHEGRENYETVVSWR 143

Query:    62 AALTRAANLSG 72
              ALT  A++SG
Sbjct:   144 QALTNLASISG 154

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
             C  E+V    CK+     Q V+PV + + P D+ NQ  +F +AF K   R   E++++W+
Sbjct:    78 CLDEVVAILKCKE--KFGQIVIPVLYHVDPLDIENQTGSFGDAFAKR--RDKAEQLQEWK 133

Query:    62 AALTRAANLSGWA 74
              + T A NL GW+
Sbjct:   134 DSFTEAINLPGWS 146

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query:     2 CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFM-LEKVKKW 60
             C  E+VK  + +   ++  TV+P+F+ + P  +R Q  + AE F KHEAR    EKV  W
Sbjct:    80 CLDELVKIMDFENKGSI--TVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASW 137

Query:    61 RAALTRAANLSG 72
             R ALT  A++SG
Sbjct:   138 RRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.117.24.1 tir-nbs-lrr resistance protein (507 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-11
pfam01582	135	pfam01582, TIR, TIR domain	3e-08
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 58.3 bits (141), Expect = 1e-11
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+++   CK+   + Q V+PVF+ + PS VR Q  +F EAF K       ++  +W+
Sbjct: 83  CLNELLEIVRCKEE--LGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWK 140

Query: 62  AALTRAANLSGW 73
            ALT  AN+ G+
Sbjct: 141 QALTDVANILGY 152

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFM--LEKVKK 59
           C  E+V+   C      ++ +LP+F+ + PSDVR Q+  F +AF+K         +K++ 
Sbjct: 70  CLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRF 129

Query: 60  WRAALT 65
           W+ AL 
Sbjct: 130 WKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARF-MLEKVKKW 60
           C  E+V              V+P+F+++ PSDVR Q   F + F K+  ++   EK + W
Sbjct: 72  CLDELVAALENALEEG-GLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQFW 130

Query: 61  RAALT 65
           + AL 
Sbjct: 131 KKALY 135

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
PLN03194	187	putative disease resistance protein; Provisional	99.93
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.01
smart00255	140	TIR Toll - interleukin 1 - resistance.	98.6
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	83.0

>PLN03210 Resistant to P

Probab=99.97  E-value=1.4e-32  Score=230.64  Aligned_cols=90  Identities=31%  Similarity=0.578  Sum_probs=86.9

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCccccccccchHHHHHHHHHHhhCHHHHHHHHHHHHHhhcccccccCCCCC
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPK   80 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~~~~~   80 (93)
                      ||||||++|+||++  +.+++|+||||+|+|||||+|+|.||+||.+|+.+...+++++||+||++||+++||++.++++
T Consensus        82 wcl~el~~i~~~~~--~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~  159 (1153)
T PLN03210         82 WCLNELLEIVRCKE--ELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPN  159 (1153)
T ss_pred             HHHHHHHHHHHhhh--hcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCC
Confidence            99999999999999  9999999999999999999999999999999998877899999999999999999999999999


Q ss_pred             HhHHHchhhhcc
Q 047212           81 GLIAFRKIPCRL   92 (93)
Q Consensus        81 e~~~i~~Iv~~~   92 (93)
                      |+++|++||.+|
T Consensus       160 E~~~i~~Iv~~v  171 (1153)
T PLN03210        160 EAKMIEEIANDV  171 (1153)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=99.93  E-value=1.1e-26  Score=163.21  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=65.7

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCccccccc-cchHHHHHHHHHHhhCHHHHHHHHHHHHHhhcccccccCC-C
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQ-NENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHE-A   78 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q-~g~fg~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~~-~   78 (93)
                      ||||||++|++|.+      .|+||||+|+|||||+| .|.           ...+++++||.||++||+++|+++.. .
T Consensus        97 WCLdEL~~I~e~~~------~ViPIFY~VdPsdVr~q~~~~-----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~  159 (187)
T PLN03194         97 FCLHELALIMESKK------RVIPIFCDVKPSQLRVVDNGT-----------CPDEEIRRFNWALEEAKYTVGLTFDSLK  159 (187)
T ss_pred             hHHHHHHHHHHcCC------EEEEEEecCCHHHhhccccCC-----------CCHHHHHHHHHHHHHHhccccccCCCCC
Confidence            99999999999855      79999999999999997 543           23689999999999999999998875 4


Q ss_pred             CCHhHHHchhhhcc
Q 047212           79 PKGLIAFRKIPCRL   92 (93)
Q Consensus        79 ~~e~~~i~~Iv~~~   92 (93)
                      ++|+++|++||..+
T Consensus       160 ~~e~e~i~~iv~~v  173 (187)
T PLN03194        160 GNWSEVVTMASDAV  173 (187)
T ss_pred             CCHHHHHHHHHHHH
Confidence            78999999998653

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.01  E-value=6.3e-11  Score=78.71  Aligned_cols=65  Identities=26%  Similarity=0.373  Sum_probs=53.6

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCccccc-cccchHHHHHHHHHHhhC----HHHHHHHHHHHH
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVR-NQNENFAEAFVKHEARFM----LEKVKKWRAALT   65 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr-~q~g~fg~af~~~~~~~~----~e~v~~Wr~AL~   65 (93)
                      ||+.||..++++..+.....+|+||||+|.|++++ .+++.|+.+|..+.....    ..+...|++++.
T Consensus        71 wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   71 WCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             chhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            89999999999988322259999999999999999 799999999988765444    357889999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=98.60  E-value=1e-07  Score=62.22  Aligned_cols=68  Identities=25%  Similarity=0.494  Sum_probs=55.9

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCccccccccchHHHHHHHHHHhhCHHHH-HHHHHHHHHhhc
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKV-KKWRAALTRAAN   69 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~~~~e~v-~~Wr~AL~~v~~   69 (93)
                      ||..|+..+.++... .....||||+|+..|+++..+.+.++.+|..+...+..+.. ..|+.++..+++
T Consensus        71 w~~~E~~~a~~~~~~-~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~  139 (140)
T smart00255       71 WCLDELVAALENALE-EGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS  139 (140)
T ss_pred             hHHHHHHHHHHHHHH-cCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence            899999999998762 26689999999999999999999999999888555543333 689999987764

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=83.00  E-value=0.93  Score=34.01  Aligned_cols=31  Identities=19%  Similarity=0.428  Sum_probs=23.0

Q ss_pred             chHHHHHHHhcccc--CCCCCeEEeeeeecCcc
Q 047212            2 CFGEIVKTGNCKKH--NNVRQTVLPVFFDISPS   32 (93)
Q Consensus         2 CLdEL~~I~e~~~~--~~~~~~ViPVFY~V~ps   32 (93)
                      |-|||.||..-.++  ...+..++|||--|||.
T Consensus       155 CPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe  187 (280)
T KOG2792|consen  155 CPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE  187 (280)
T ss_pred             ChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence            88999887664331  15677788999999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		2e-09
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		3e-09

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+V   + +K  ++  TV+P+F+ + P+ VR Q    AE F KH +R   EKV KWR
Sbjct: 80  CLDELVTIMDFEKKGSI--TVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWR 137
Query: 62  AALTRAANLSG 72
            ALT  A LSG
Sbjct: 138 QALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 3   FGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRA 62
             EIV+    ++  + R+ +LP+F+ + PSDVR+Q   + +AF KH  +F  + ++ W+ 
Sbjct: 111 LAEIVR----RQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKD 166
Query: 63  ALTRAANLSGWALHEAPK-GLIA 84
           AL +  +L GW + +  K G IA
Sbjct: 167 ALKKVGDLKGWHIGKNDKQGAIA 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-31
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	7e-31
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	8e-20

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  106 bits (268), Expect = 3e-31
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+V   + +K      TV+P+F+ + P+ VR Q    AE F KH +R   EKV KWR
Sbjct: 80  CLDELVTIMDFEKKG--SITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWR 137

Query: 62  AALTRAANLSGW 73
            ALT  A LSG 
Sbjct: 138 QALTNFAQLSGD 149

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  106 bits (267), Expect = 7e-31
 Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+ +    ++ +  R+ +LP+F+ + PSDVR+Q   + +AF KH  +F  + ++ W+
Sbjct: 107 CLMELAEIVRRQEEDP-RRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWK 165

Query: 62  AALTRAANLSGWALHE 77
            AL +  +L GW + +
Sbjct: 166 DALKKVGDLKGWHIGK 181

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score = 77.0 bits (190), Expect = 8e-20
 Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
              E+      +     R  +LP++  +S  +V + +   A+    + +   ++++    
Sbjct: 91  PQKELDGLFQLESSG--RSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKSVDEIVADL 148

Query: 62  AALTR 66
            A+ R
Sbjct: 149 MAIIR 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.47
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	98.43
2js7_A	160	Myeloid differentiation primary response protein M	96.64
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	96.56
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	96.44
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	96.11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	85.98

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=5.2e-37  Score=213.18  Aligned_cols=88  Identities=38%  Similarity=0.509  Sum_probs=83.9

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCccccccccchHHHHHHHHHHhhCHHHHHHHHHHHHHhhcccccccCCCCC
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPK   80 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~~~~~   80 (93)
                      |||+||++|++|++  +.+++|+||||+|+||+||+|+|+||+||.+|+.+..++++++||.||++||+++||++.  ++
T Consensus        79 WCl~EL~~i~~~~~--~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~  154 (176)
T 3jrn_A           79 WCLDELVTIMDFEK--KGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DD  154 (176)
T ss_dssp             HHHHHHHHHHHHHH--TTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SC
T ss_pred             hHHHHHHHHHhhhc--cCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CC
Confidence            89999999999998  899999999999999999999999999999999987789999999999999999999994  57


Q ss_pred             HhHHHchhhhcc
Q 047212           81 GLIAFRKIPCRL   92 (93)
Q Consensus        81 e~~~i~~Iv~~~   92 (93)
                      |+++|++||.+|
T Consensus       155 e~~~i~~Iv~~v  166 (176)
T 3jrn_A          155 DSKLVDKIANEI  166 (176)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999765

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=4.8e-37  Score=217.47  Aligned_cols=91  Identities=27%  Similarity=0.600  Sum_probs=86.2

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCccccccccchHHHHHHHHHHhhCHHHHHHHHHHHHHhhcccccccCCCCC
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPK   80 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~~~~~   80 (93)
                      |||+||++|++|+++ .++++||||||+|+||+||+|+|+||+||.+|+.++..+++++||.||++||+++||++.++.+
T Consensus       106 WCl~EL~~I~e~~~~-~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~  184 (204)
T 3ozi_A          106 WCLMELAEIVRRQEE-DPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDK  184 (204)
T ss_dssp             HHHHHHHHHHHHHHH-CTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSC
T ss_pred             HHHHHHHHHHHHHHh-cCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCC
Confidence            999999999999872 3689999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HhHHHchhhhcc
Q 047212           81 GLIAFRKIPCRL   92 (93)
Q Consensus        81 e~~~i~~Iv~~~   92 (93)
                      |+++|++||.++
T Consensus       185 e~~~i~~Iv~di  196 (204)
T 3ozi_A          185 QGAIADKVSADI  196 (204)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.47  E-value=2.3e-15  Score=100.89  Aligned_cols=49  Identities=14%  Similarity=0.200  Sum_probs=44.3

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCccccccccchHHHHHHHHHHh
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEAR   51 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~   51 (93)
                      ||++||.++++|..  .+++.|+||||+|+|++||+|+|.||++|......
T Consensus        90 wc~~El~~~~~~~~--~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~  138 (154)
T 3h16_A           90 WPQKELDGLFQLES--SGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST  138 (154)
T ss_dssp             CCHHHHHHHTCCCT--TSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT
T ss_pred             HHHHHHHHHHHHHh--cCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc
Confidence            99999999999988  78889999999999999999999999987765443

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=98.43  E-value=1e-07  Score=63.39  Aligned_cols=57  Identities=14%  Similarity=0.174  Sum_probs=39.3

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCccc----cccccc----hHHHHHHHHHHhhCHHHHHHHHHHH
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSD----VRNQNE----NFAEAFVKHEARFMLEKVKKWRAAL   64 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~----Vr~q~g----~fg~af~~~~~~~~~e~v~~Wr~AL   64 (93)
                      ||+.||..++.+..  .....||||||+|++++    ++....    ....+|.+.     .+.|.+|++||
T Consensus        81 wc~~El~~al~~~~--~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-----~~~v~~~~~~~  145 (146)
T 3ub2_A           81 WCKYQMLQALTEAP--GAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-----KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHHTSS--SSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-----HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHh--hcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-----HHHHHHHHHhc
Confidence            89999999999874  22336779999999554    455432    123444444     46699999886

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=96.64  E-value=0.00028  Score=47.19  Aligned_cols=29  Identities=7%  Similarity=0.093  Sum_probs=23.6

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecC
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDIS   30 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~   30 (93)
                      ||+.||..++++..+ ..++.||||||+.-
T Consensus        88 wc~~El~~a~~~~~~-~~~~~vIpV~~~~~  116 (160)
T 2js7_A           88 ECDFQTKFALSLSPG-AHQKRLIPIKYKAM  116 (160)
T ss_dssp             HHHHHHHHHHHHCTT-HHHHTEEEEESSCC
T ss_pred             HHHHHHHHHHHHHHc-cCCCEEEEEEEccc
Confidence            899999999997631 45678999999854

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=96.56  E-value=0.00026  Score=46.68  Aligned_cols=32  Identities=6%  Similarity=0.015  Sum_probs=25.2

Q ss_pred             CchHHHHHHHh-ccccCCCCCeEEeeeee-cCcccc
Q 047212            1 RCFGEIVKTGN-CKKHNNVRQTVLPVFFD-ISPSDV   34 (93)
Q Consensus         1 wCLdEL~~I~e-~~~~~~~~~~ViPVFY~-V~ps~V   34 (93)
                      ||+.||..++. +..  ..+..||||||+ +++..+
T Consensus        77 wc~~El~~a~~~~~~--~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           77 WXKYELDFSHFRLFD--ENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             THHHHSCCSCCTTCG--GGTTCCEEEESSCCCTTTS
T ss_pred             hHHHHHHHHHHHHHh--cCCCEEEEEEecCCChhhc
Confidence            99999999986 445  667789999995 666544

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=96.44  E-value=0.00081  Score=45.78  Aligned_cols=32  Identities=13%  Similarity=0.139  Sum_probs=20.8

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeee-cCccc
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFD-ISPSD   33 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~-V~ps~   33 (93)
                      ||+.||..++.+..+ ..++.||||||+ +.+..
T Consensus       107 wc~~El~~a~~~~~~-~~~~~vIpV~~~~i~~~~  139 (178)
T 2j67_A          107 WCHYEFYFAHHNLFH-ENSDHIILILLEPIPFYC  139 (178)
T ss_dssp             GGGTHHHHTTCC--------CEEEEESSCCCGGG
T ss_pred             hHHHHHHHHHHHHHh-cCCCEEEEEEecCCChHH
Confidence            899999999975431 567889999996 54443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=96.11  E-value=0.0022  Score=42.75  Aligned_cols=31  Identities=6%  Similarity=-0.205  Sum_probs=25.2

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCcc
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPS   32 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps   32 (93)
                      ||+.||..++.+.-+ ..++.||||||.-.|.
T Consensus        85 wc~~El~~a~~~~~~-~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           85 WSIFELETRLRNMLV-TGEIKVILIECSELRG  115 (159)
T ss_dssp             THHHHHSHHHHHHHH-TTSSEEEEEECSCCCS
T ss_pred             HHHHHHHHHHHHHHh-cCCCEEEEEEeccccc
Confidence            999999999998631 6788999999975444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=85.98  E-value=0.49  Score=37.86  Aligned_cols=30  Identities=7%  Similarity=0.104  Sum_probs=23.5

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeecCc
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISP   31 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~p   31 (93)
                      ||..|+...+.+.-+ +.+..||||||+--|
T Consensus       745 wc~~e~~~a~~~~~~-~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          745 WCLEAFSYAQGRCLS-DLNSALIMVVVGSLS  774 (844)
T ss_dssp             STTHHHHHHHSCCCC-SSCTTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHH-hcCCcEEEEEeccCC
Confidence            999999988876431 677899999997443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	88.73
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	83.82

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.14  Score=31.51  Aligned_cols=29  Identities=7%  Similarity=0.020  Sum_probs=20.5

Q ss_pred             CchHHHHHHHh-ccccCCCCCeEEeeeeecCc
Q 047212            1 RCFGEIVKTGN-CKKHNNVRQTVLPVFFDISP   31 (93)
Q Consensus         1 wCLdEL~~I~e-~~~~~~~~~~ViPVFY~V~p   31 (93)
                      ||..|+...+. ..+  .++..+|||+++--|
T Consensus        77 wc~~E~~~a~~~~~~--~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          77 WCKYELDFSHFRLFD--ENNDAAILILLEPIE  106 (149)
T ss_dssp             THHHHSCCSCCTTCG--GGTTCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHH--cCCceEEEEEeccCc
Confidence            89999866544 334  567789999997433

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.82  E-value=0.24  Score=30.82  Aligned_cols=28  Identities=11%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             CchHHHHHHHhccccCCCCCeEEeeeeec
Q 047212            1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDI   29 (93)
Q Consensus         1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V   29 (93)
                      ||..|+...+++.-. .+...+|||+++-
T Consensus        82 w~~~E~~~a~~~~~~-~~~~~lIpV~l~~  109 (161)
T d1fyva_          82 WCHYELYFAHHNLFH-EGSNSLILILLEP  109 (161)
T ss_dssp             SHHHHHHTTSCCCSC-SSCSSEEEEESSC
T ss_pred             HHHHHHHHHHHHHHH-cCCCceeEEEEec
Confidence            899999998876542 4567899999973