Citrus Sinensis ID: 047229
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | 2.2.26 [Sep-21-2011] | |||||||
| Q6CGU8 | 486 | Probable transporter MCH1 | yes | no | 0.313 | 0.386 | 0.274 | 1e-08 | |
| Q96TW9 | 489 | Probable transporter MCH1 | N/A | no | 0.606 | 0.742 | 0.239 | 1e-07 | |
| Q9P3K8 | 598 | Probable transporter MCH1 | N/A | no | 0.310 | 0.311 | 0.253 | 0.0005 |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 16/204 (7%)
Query: 322 GDDYALLQAIFSIDMLILFTATTCSIGGALAAI-DNMGQIGKALGYPTHSIASF---ISL 377
G + A L+ F+ LF IGG +NMG I + SF +SL
Sbjct: 259 GHEGATLKEFFTDKTAWLFLLCFVFIGGPFEMFQNNMGAILDTVTVENADSPSFSTHVSL 318
Query: 378 ISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV----HNSLYFA 433
+ ++ + R+V GF+SE + V RP+LL+++ L + +L++ + N+ YF+
Sbjct: 319 FATFSTVSRLVVGFSSEAM--ESHVSRPVLLSVIALVAACIHLMVPSGIFTVFDNAKYFS 376
Query: 434 --SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491
+I+ GF G+ +L+ TI+++++G+ + T++ ++ +GS + + A ++YD
Sbjct: 377 VVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGLLFA-KVYD-A 434
Query: 492 ALKQGKGGLN--CIGARCYRVAFV 513
A + G G ++ C G CY + FV
Sbjct: 435 ASEVGVGSMSQVCSGVHCYGLTFV 458
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Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 195/460 (42%), Gaps = 97/460 (21%)
Query: 42 GSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGV-LAGLTYEVAPPWIVLLSGSI 100
GS +FAL++ ++ L Y Q +N++ F +G L + + G + P VLLS
Sbjct: 43 GSVLLFALFTPVLQHQLHYTQFQINIIGSFTSIGMYLPLPVLGYLADCHGP--VLLSVIS 100
Query: 101 MNFF--GFFMIWLSVSHRFGAKPHVWQMCL-YMLIGANSQSFPNTGALVTCVKNFPESRG 157
+ FF G+ + V + + W + + + LIG + + T AL+TC K +P+S+G
Sbjct: 101 VLFFSPGYTLAATVVQNDWS----FWYLAISFGLIGCATSALYFT-ALLTCAKIYPKSKG 155
Query: 158 VVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPE 217
+ I GLS I ++ +L L+CL +
Sbjct: 156 LTISAPVTCYGLSSLIGSR-------------VLKLSCL------------------QKN 184
Query: 218 NELKVFH-----SFLYILLVLAGFIMVTII-IQNKLRFTRSEYIATALVVVVLSLFIPLA 271
+L ++ SFLY L L ++ +++ I+ + + E PL
Sbjct: 185 GDLDLYRCFKLFSFLYFFLGLFDWVSASVVSIERDVLLRKHEDGENT----------PLL 234
Query: 272 AVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAI 331
QE + D +P N K+ FL +K++S Y LL
Sbjct: 235 TDPNQE------------HENNDDLVP--NHKSKFLKF--IKDIST-------YVLL--- 268
Query: 332 FSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGF 391
FS+ + SIG + I NMG + KA+ P I+ +++ ++++ L R+ G
Sbjct: 269 FSLLL---------SIGPSEMYITNMGSLVKAIT-PNSLISDQVAIHAVFSTLSRLSLGA 318
Query: 392 ASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA--VHNSLYFASIIIGFCLGAQLSLLV 449
S+ + Y++ R LL +I+ + IA + V + Y S + GF G +L
Sbjct: 319 LSDFLVTNYQISRSWLLLSIIVLGFFTQIFIATSTFVKDQYYIISALSGFSYGGLFTLYP 378
Query: 450 TIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489
T+I ++G + + + + ++ IGS F + V G +YD
Sbjct: 379 TVIFSIWGPEIFGSAWGSFMIAPAIGSTTFGM-VFGLVYD 417
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Probable transporter. Hansenula anomala (taxid: 4927) |
| >sp|Q9P3K8|MCH1_NEUCR Probable transporter MCH1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mch-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 43/229 (18%)
Query: 347 IGGALAAIDNMGQIGKALGYPTH--------SIASFISLISIWNFLGRIVAGFASEIFLA 398
IG A I+N+G + K L YP H S A+ +S++ I + L R++ G +++ LA
Sbjct: 368 IGPGEAFINNLGTVIKTL-YPPHLKFVGEPTSAATHVSIVGITSTLVRLLTGSLTDL-LA 425
Query: 399 KYKVPRPLLLTLV-------ILFSCIGYLLIAFAV----------------HNSLYF-AS 434
R + +T S + +LL FAV H ++ AS
Sbjct: 426 PSPQARHVQITSSGTLERKRFSLSRVSFLLF-FAVTLSVGLATLASGWIQNHGERFWVAS 484
Query: 435 IIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD---RE 491
++G GA SL II+ ++G+++++T + + ++ +G+ + + V +Y +
Sbjct: 485 GLVGAGYGAVFSLTPIIITVIWGVENFATNWGIVAMFPALGATFWGL-VYSAVYQSGVEK 543
Query: 492 ALKQGKGGLN---CIGARCYRVAFVTISAATFFACIVSIILVLRTKNFY 537
A G+GG C G+ CY AF ++A+ + AC + ++ + KN +
Sbjct: 544 AASNGQGGEEDQFCYGSECYASAFWAMAASVWVACGL-VLWAWKGKNGW 591
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Probable transporter. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | ||||||
| 359481931 | 638 | PREDICTED: uncharacterized protein LOC10 | 0.916 | 0.860 | 0.607 | 0.0 | |
| 255556864 | 624 | conserved hypothetical protein [Ricinus | 0.938 | 0.900 | 0.604 | 0.0 | |
| 224063593 | 559 | predicted protein [Populus trichocarpa] | 0.894 | 0.958 | 0.619 | 0.0 | |
| 297739974 | 601 | unnamed protein product [Vitis vinifera] | 0.884 | 0.881 | 0.610 | 0.0 | |
| 147838379 | 613 | hypothetical protein VITISV_029213 [Viti | 0.906 | 0.885 | 0.585 | 0.0 | |
| 224068813 | 568 | predicted protein [Populus trichocarpa] | 0.891 | 0.940 | 0.578 | 0.0 | |
| 255556862 | 581 | conserved hypothetical protein [Ricinus | 0.919 | 0.948 | 0.584 | 0.0 | |
| 255556866 | 561 | conserved hypothetical protein [Ricinus | 0.918 | 0.980 | 0.587 | 0.0 | |
| 356570778 | 571 | PREDICTED: uncharacterized protein LOC10 | 0.886 | 0.929 | 0.589 | 0.0 | |
| 356572482 | 581 | PREDICTED: uncharacterized protein LOC10 | 0.916 | 0.944 | 0.566 | 0.0 |
| >gi|359481931|ref|XP_002268663.2| PREDICTED: uncharacterized protein LOC100248651 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/584 (60%), Positives = 439/584 (75%), Gaps = 35/584 (5%)
Query: 21 LHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGV 80
L +L RWFM FA+LLIMSV G++YMF+LYS +IK+SLGYDQTTLNL+SFFKDLGGN+GV
Sbjct: 20 LQVLVGRWFMVFASLLIMSVAGATYMFSLYSGEIKTSLGYDQTTLNLLSFFKDLGGNVGV 79
Query: 81 LAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFP 140
L+GL EV PPW+VL G++MNFFG+FMIWL+V+ R AKP +WQMCLY+ IGANSQSF
Sbjct: 80 LSGLINEVTPPWVVLCIGAVMNFFGYFMIWLAVTDRI-AKPQIWQMCLYICIGANSQSFA 138
Query: 141 NTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIV 200
NTGALVTCV+NFPESRG+V+GLLKG +GLSGAI+TQ+Y A GD++K+LIL +A LP V
Sbjct: 139 NTGALVTCVRNFPESRGIVLGLLKGFVGLSGAIITQLYRAFYGDDSKSLILFIAWLPAAV 198
Query: 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALV 260
VF+ TIRI+K+ R NELKVF+ LY+ L LAGF+MV IIIQNK F+R EY +A V
Sbjct: 199 SFVFLRTIRIMKVGRQANELKVFYDLLYMSLGLAGFLMVIIIIQNKFTFSRIEYSGSAAV 258
Query: 261 VVVLSLFIPLAAVIKQELNIWKGNKLQALDA---------------------HYDQAIPA 299
V++L LF+PLA VIK+E+NIWKG K QALDA DQ P
Sbjct: 259 VLIL-LFLPLAVVIKEEINIWKGKK-QALDAAQVKVITENPPAVELASSPVVSLDQLPPP 316
Query: 300 LNVKTNFLTLFS-LKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMG 358
N S K + K P+RG+DY +LQA+FSIDMLILF TTC +GG L AIDN+G
Sbjct: 317 TAAPENAEKSVSCFKTMFKPPDRGEDYTILQALFSIDMLILFIVTTCGVGGTLTAIDNLG 376
Query: 359 QIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIG 418
QIG + GY HS +F+SL+SIWN+LGR+V+GFASEIFL +YK PRPL+LT V+LFSC+G
Sbjct: 377 QIGSSQGYTAHSTTTFVSLVSIWNYLGRVVSGFASEIFLTRYKFPRPLMLTFVLLFSCVG 436
Query: 419 YLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYI 478
+LLIAFAV NSLYFAS+IIGFC GAQ L+ IISELFGLK+YSTLYN G+V+SP+GSYI
Sbjct: 437 HLLIAFAVPNSLYFASVIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGAVASPVGSYI 496
Query: 479 FNVRVAGRLYDREALKQGKGG---------LNCIGARCYRVAFVTISAATFFACIVSIIL 529
NV+VAG LYD+EALKQ + L C GA CY+++F+ I+AAT F CI+S IL
Sbjct: 497 LNVKVAGHLYDKEALKQLEASGVTRVAGQDLTCTGAACYKLSFIIITAATLFGCIISFIL 556
Query: 530 VLRTKNFYQGDIYNKFKDEAEHIENNDVSLTIDCVVPMKDMEAK 573
V+RTK FYQGDIY KF+ EA E N S + + ++ + + E+K
Sbjct: 557 VIRTKKFYQGDIYKKFRQEANKAEINMAS-SGNGILQLGETESK 599
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556864|ref|XP_002519465.1| conserved hypothetical protein [Ricinus communis] gi|223541328|gb|EEF42879.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/594 (60%), Positives = 446/594 (75%), Gaps = 32/594 (5%)
Query: 13 WREVKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFK 72
WR++KGF ++ RWFM FA+LLIMSV G++YMF LYSNDIK+SLGYDQ+TLNL+SFFK
Sbjct: 16 WRDMKGFSFRVILGRWFMVFASLLIMSVAGATYMFGLYSNDIKTSLGYDQSTLNLLSFFK 75
Query: 73 DLGGNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLI 132
DLGGN+G+L+GL EV PPW+VL G++MNFFG+FMIWL+V+ AKP VWQMCLY+ I
Sbjct: 76 DLGGNVGILSGLINEVTPPWVVLSIGAVMNFFGYFMIWLAVTGHI-AKPTVWQMCLYICI 134
Query: 133 GANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILL 192
GANSQSF NTGALVTCVKNFPESRG ++GLLKG +GLSGAI+TQ+YHA+ GDN+KALILL
Sbjct: 135 GANSQSFANTGALVTCVKNFPESRGSILGLLKGFVGLSGAILTQLYHAIYGDNSKALILL 194
Query: 193 LACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRS 252
+A LP V +F+ TIRII+I R NELKVF+ LYI L LAG +MV IIIQNK FTR
Sbjct: 195 IAWLPAAVSFIFLRTIRIIRIVRQANELKVFYKLLYISLGLAGLLMVLIIIQNKFSFTRI 254
Query: 253 EYIATALVVVVLSLFIPLAAVIKQELNIWKGNK--------------------LQALDAH 292
EYI+++ +VV L LF+P+ VIK+E ++W K L A
Sbjct: 255 EYISSSALVVGL-LFLPIVIVIKEEYDLWNSKKEALNDPFPVKIVTETPPQVELTASTTP 313
Query: 293 YDQAIPALNVKTNFLTLFSL-KNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGAL 351
+Q+ P + T S N+ K P+RG+DY +LQA+FS+DMLILF ATTC +GG L
Sbjct: 314 LEQSTPHTEIPQPTETQPSCADNIFKPPDRGEDYTILQALFSVDMLILFIATTCGVGGTL 373
Query: 352 AAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLV 411
AIDN+GQIG ALGYPT S +F+SL+SIWN+LGR+VAGFASEI L KYK+PRPLL T V
Sbjct: 374 TAIDNLGQIGNALGYPTRSTTTFVSLVSIWNYLGRVVAGFASEILLTKYKIPRPLLFTFV 433
Query: 412 ILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVS 471
+LFSC+G+LLIAF V NSLY AS+IIGFC GAQ LL IISE+FGLK+YSTLYN GSV+
Sbjct: 434 LLFSCVGHLLIAFGVPNSLYIASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGSVA 493
Query: 472 SPIGSYIFNVRVAGRLYDREALKQGKG---------GLNCIGARCYRVAFVTISAATFFA 522
SPIGSYI NVRVAG LYD+EALKQ K L C G +CY++AF+ I+AAT F
Sbjct: 494 SPIGSYILNVRVAGHLYDKEALKQMKDLGLTREAGQDLTCNGVQCYKLAFLIITAATVFG 553
Query: 523 CIVSIILVLRTKNFYQGDIYNKFKDEAEHIENNDVSLTIDCVVPMKDMEAKANT 576
C++S++LVLRT+ FYQGDIY KF+ A+ +EN+ VSL + V +K++ ++ T
Sbjct: 554 CLISVLLVLRTRKFYQGDIYKKFRGGAKAMENHHVSLNGNGNVTLKEITSEVMT 607
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063593|ref|XP_002301218.1| predicted protein [Populus trichocarpa] gi|222842944|gb|EEE80491.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/562 (61%), Positives = 430/562 (76%), Gaps = 26/562 (4%)
Query: 16 VKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLG 75
++ F L +L SRWF FA+LLIMSVNG+SYMF LYS DIK+SLGYDQTTLN +SFFKDLG
Sbjct: 1 MRSFSLQILSSRWFTIFASLLIMSVNGTSYMFGLYSGDIKTSLGYDQTTLNTLSFFKDLG 60
Query: 76 GNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGAN 135
GNLGV AGL YE+ PPW+VL G++MNF +F+IW++V+ R KP +WQ+CLYM + N
Sbjct: 61 GNLGVSAGLVYEIMPPWVVLSIGAVMNFSAYFLIWVTVTGRIN-KPRLWQVCLYMCLATN 119
Query: 136 SQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLAC 195
+ S+PNTGALVTCVKNFPESRG VIGLLKGLI LSGAIMTQ+YHA G+++K+LILL+A
Sbjct: 120 AASYPNTGALVTCVKNFPESRGSVIGLLKGLISLSGAIMTQLYHAFYGNDSKSLILLIAW 179
Query: 196 LPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYI 255
+P IVP++F+ TIRI+K+ + E ELKVF+ FLY L LAGFIM+ IIIQNKL+FTR+EYI
Sbjct: 180 IPAIVPLLFLRTIRIMKVVQQEKELKVFYKFLYTALGLAGFIMLIIIIQNKLKFTRAEYI 239
Query: 256 ATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKT----------- 304
++A V+ LF+PLA VIK+E +W+ K Q L+ H + A N
Sbjct: 240 SSATFVLAF-LFLPLAIVIKEEFTLWQSKK-QNLNDHSQLNVVAENPSAVVTPPLGGRLE 297
Query: 305 NFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKAL 364
F + S+ N +P+RG+DY +LQAI SIDMLI+ ATTC +GGALAAIDN+GQI +L
Sbjct: 298 PFPCIVSIFN---QPDRGEDYTILQAISSIDMLIILIATTCGVGGALAAIDNLGQIADSL 354
Query: 365 GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF 424
GY TH+I +FISL+S+WNFLGR++A FASE+ L KYK PRPL+LT VILFSCIG++LIAF
Sbjct: 355 GYKTHNIGTFISLVSVWNFLGRVLASFASEVALTKYKFPRPLMLTFVILFSCIGHVLIAF 414
Query: 425 AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVA 484
V +SLY +SIIIGFCLGAQL L+ IISE+FGLKH+STLY+VGSVSSPIGSYIFNV+VA
Sbjct: 415 GVEHSLYISSIIIGFCLGAQLPLVSAIISEIFGLKHFSTLYSVGSVSSPIGSYIFNVKVA 474
Query: 485 GRLYDREALKQGKG---------GLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535
G LYD+EALKQ + LNC G C+R AFV I+AATF +VSIILV RT+
Sbjct: 475 GNLYDKEALKQMEALGLKREAGKELNCSGVHCFRKAFVIITAATFLGFLVSIILVYRTRR 534
Query: 536 FYQGDIYNKFKDEAEHIENNDV 557
FY+GDIY KF +EA E V
Sbjct: 535 FYKGDIYKKFTEEAVATEAKGV 556
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739974|emb|CBI30156.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/560 (61%), Positives = 432/560 (77%), Gaps = 30/560 (5%)
Query: 30 MFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVA 89
M FA+LLIMSV G++YMF+LYS +IK+SLGYDQTTLNL+SFFKDLGGN+GVL+GL EV
Sbjct: 1 MVFASLLIMSVAGATYMFSLYSGEIKTSLGYDQTTLNLLSFFKDLGGNVGVLSGLINEVT 60
Query: 90 PPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCV 149
PPW+VL G++MNFFG+FMIWL+V+ R AKP +WQMCLY+ IGANSQSF NTGALVTCV
Sbjct: 61 PPWVVLCIGAVMNFFGYFMIWLAVTDRI-AKPQIWQMCLYICIGANSQSFANTGALVTCV 119
Query: 150 KNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIR 209
+NFPESRG+V+GLLKG +GLSGAI+TQ+Y A GD++K+LIL +A LP V VF+ TIR
Sbjct: 120 RNFPESRGIVLGLLKGFVGLSGAIITQLYRAFYGDDSKSLILFIAWLPAAVSFVFLRTIR 179
Query: 210 IIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIP 269
I+K+ R NELKVF+ LY+ L LAGF+MV IIIQNK F+R EY +A VV++L LF+P
Sbjct: 180 IMKVGRQANELKVFYDLLYMSLGLAGFLMVIIIIQNKFTFSRIEYSGSAAVVLIL-LFLP 238
Query: 270 LAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQ 329
LA VIK+E+NIWK + + ++++ F T+F K P+RG+DY +LQ
Sbjct: 239 LAVVIKEEINIWKAPE------NAEKSVSC------FKTMF------KPPDRGEDYTILQ 280
Query: 330 AIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVA 389
A+FSIDMLILF TTC +GG L AIDN+GQIG + GY HS +F+SL+SIWN+LGR+V+
Sbjct: 281 ALFSIDMLILFIVTTCGVGGTLTAIDNLGQIGSSQGYTAHSTTTFVSLVSIWNYLGRVVS 340
Query: 390 GFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLV 449
GFASEIFL +YK PRPL+LT V+LFSC+G+LLIAFAV NSLYFAS+IIGFC GAQ L+
Sbjct: 341 GFASEIFLTRYKFPRPLMLTFVLLFSCVGHLLIAFAVPNSLYFASVIIGFCFGAQWPLVF 400
Query: 450 TIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGG---------L 500
IISELFGLK+YSTLYN G+V+SP+GSYI NV+VAG LYD+EALKQ + L
Sbjct: 401 AIISELFGLKYYSTLYNFGAVASPVGSYILNVKVAGHLYDKEALKQLEASGVTRVAGQDL 460
Query: 501 NCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYNKFKDEAEHIENNDVSLT 560
C GA CY+++F+ I+AAT F CI+S ILV+RTK FYQGDIY KF+ EA E N S +
Sbjct: 461 TCTGAACYKLSFIIITAATLFGCIISFILVIRTKKFYQGDIYKKFRQEANKAEINMAS-S 519
Query: 561 IDCVVPMKDMEAKANTGRAA 580
+ ++ + + E+KA A+
Sbjct: 520 GNGILQLGETESKATIYSAS 539
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838379|emb|CAN63260.1| hypothetical protein VITISV_029213 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/589 (58%), Positives = 433/589 (73%), Gaps = 46/589 (7%)
Query: 16 VKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLG 75
++ FGL +L RWFM FA+LLIMSV G++YMF+LYS IK+SLGYDQTTLNL+SFFKDLG
Sbjct: 1 MRRFGLQVLVGRWFMVFASLLIMSVAGATYMFSLYSGXIKTSLGYDQTTLNLLSFFKDLG 60
Query: 76 GNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGAN 135
GN+GVL+GL EV PPW+VL G++MNFFG+FMIWL+V+ R AKP +WQMCLY+ IGAN
Sbjct: 61 GNVGVLSGLINEVTPPWVVLCIGAVMNFFGYFMIWLAVTDRI-AKPQIWQMCLYICIGAN 119
Query: 136 SQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLAC 195
SQSF NTGALVTCV+NFPESRG+V+GLLKG +GLSGAI+TQ+Y A GD++K+LIL +A
Sbjct: 120 SQSFANTGALVTCVRNFPESRGIVLGLLKGFVGLSGAIITQLYRAFYGDDSKSLILFIAW 179
Query: 196 LPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYI 255
LP V VF+ TIRI+K+ R NELKVF+ LY+ L LAGF+MV IIIQNK F+R EY
Sbjct: 180 LPXAVSFVFLRTIRIMKVGRQANELKVFYDLLYMSLGLAGFLMVIIIIQNKFTFSRIEYS 239
Query: 256 ATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAI------------------ 297
+A VV++L LF+PLA VIK+E+NIWK K QALDA + I
Sbjct: 240 GSAAVVLIL-LFLPLAVVIKEEINIWKXKK-QALDAAQVKVITENPXAVELASSPVVSLX 297
Query: 298 ----PALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAA 353
P + ++ K + K P+RG+DY +LQA+FSIDMLILF TTC +GG L A
Sbjct: 298 QLPPPTAAPENAEKSVSCFKTMFKPPDRGEDYTILQALFSIDMLILFIVTTCGVGGTLTA 357
Query: 354 IDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVIL 413
IDN+GQIG + GY HS +F+SL+SIWN+LGR+V+GFASEIFL +YK PRPL+LT V+L
Sbjct: 358 IDNLGQIGSSXGYTAHSTTTFVSLVSIWNYLGRVVSGFASEIFLTRYKFPRPLMLTFVLL 417
Query: 414 FSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSP 473
FSC+G+LLIAFAV NSLYFAS+IIGFC GAQ L+ IISELFGLK+YSTLYN G+V+SP
Sbjct: 418 FSCVGHLLIAFAVPNSLYFASVIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGAVASP 477
Query: 474 IGSYIFNVRVAGRLYDREALKQGKGG---------LNCIGARCYRVAFVTISAATFFACI 524
+GSYI NV+VAG LYD+EALKQ + L C GA CY+++F+ I+AAT F CI
Sbjct: 478 VGSYILNVKVAGHLYDKEALKQLEASGVTRVAGQDLTCTGAACYKLSFIIITAATLFGCI 537
Query: 525 VSIILVLRTKNFYQGDIYNKFKDEAEHIENNDVSLTIDCVVPMKDMEAK 573
+S ILV+RTK K EA E N S + + ++ + + E+K
Sbjct: 538 ISFILVIRTK-----------KQEANKAEINMAS-SGNGILQLGETESK 574
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068813|ref|XP_002326206.1| predicted protein [Populus trichocarpa] gi|222833399|gb|EEE71876.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/572 (57%), Positives = 424/572 (74%), Gaps = 38/572 (6%)
Query: 16 VKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLG 75
+K FGL +L RWFM FA+ LIM+++G++YMF+LYS DIK SLGYDQ+TLNL+SFFKD+G
Sbjct: 1 MKRFGLQVLLGRWFMVFASFLIMAMSGATYMFSLYSTDIKRSLGYDQSTLNLLSFFKDVG 60
Query: 76 GNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGAN 135
GN+G+L G+ EV+PPW++L +G +MNFFG+FMIWL+++ + AKP VWQMCLY+ IGAN
Sbjct: 61 GNVGLLPGVINEVSPPWVILSAGVVMNFFGYFMIWLAITGKI-AKPKVWQMCLYICIGAN 119
Query: 136 SQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLAC 195
SQ+F TGALVTCVKNFPESRG V+GLLKG +GLSGAIMTQ+YHA GD++KA ILL+A
Sbjct: 120 SQTFATTGALVTCVKNFPESRGSVLGLLKGFVGLSGAIMTQVYHAFYGDDSKAFILLIAW 179
Query: 196 LPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYI 255
LP V +F+ TIRI+KI R NE+KVF+ LYI L LAGF+M+ IIIQNK RFTR EYI
Sbjct: 180 LPAAVSFIFLRTIRIMKIVRQANEIKVFYQLLYISLGLAGFLMILIIIQNKFRFTRIEYI 239
Query: 256 ATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAI------------------ 297
A+VV++L LF+P+A IK+E +IWK K+ D + +
Sbjct: 240 GGAIVVLIL-LFLPVAVAIKEEYDIWKSKKVVFSDPSQVKIVTENPPEVELPLSTQPPES 298
Query: 298 -------PALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGA 350
PA + F +N+ K PERG+DY +LQA+FS+DML+LF A TC IGG
Sbjct: 299 LPSNASDPAATSAEKQTSCF--ENIFKPPERGEDYTILQALFSLDMLVLFIAATCGIGGT 356
Query: 351 LAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTL 410
L A+DN+GQIG +LGYP+ SI +F+SL+SIWN+LGR+V+GFASEI L KYK+PRPLLL++
Sbjct: 357 LTAVDNLGQIGHSLGYPSRSITTFVSLVSIWNYLGRVVSGFASEILLKKYKIPRPLLLSI 416
Query: 411 VILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSV 470
V+LF+C G++LIAF NSLYFAS+I+GFC GAQ L+ IISE+FGLK+YSTLYN G+V
Sbjct: 417 VLLFTCAGHILIAFPSSNSLYFASVILGFCFGAQWPLMYAIISEIFGLKYYSTLYNFGAV 476
Query: 471 SSPIGSYIFNVRVAGRLYDREALKQGKG---------GLNCIGARCYRVAFVTISAATFF 521
+SP+GSYI NV +AG LYD+EA KQ K L C G +CYR++ + I+AAT F
Sbjct: 477 ASPVGSYILNVVIAGDLYDKEASKQMKALGLKRNAGEDLTCNGVQCYRMSSIIITAATLF 536
Query: 522 ACIVSIILVLRTKNFYQGDIYNKFKDEAEHIE 553
S IL LRT+ FY+GDIY KF+DEAE E
Sbjct: 537 GSFASFILTLRTRKFYKGDIYKKFRDEAEGAE 568
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556862|ref|XP_002519464.1| conserved hypothetical protein [Ricinus communis] gi|223541327|gb|EEF42878.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/583 (58%), Positives = 423/583 (72%), Gaps = 32/583 (5%)
Query: 1 MVMSKFNCIGANWREVKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGY 60
+V F G WRE+KGF L +L RWFM F++LLIM++ G+ YMF +YSNDIK+SLGY
Sbjct: 2 VVADLFGADGGGWREMKGFVLTVLVGRWFMVFSSLLIMAMAGTGYMFGMYSNDIKTSLGY 61
Query: 61 DQTTLNLVSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAK 120
DQTTLNL+SFFKD+GGN+G+L+GL EV+PPW+VL G+IMNF G+FMIW+SV+ R K
Sbjct: 62 DQTTLNLLSFFKDVGGNVGILSGLINEVSPPWVVLSIGAIMNFLGYFMIWISVTGRI-TK 120
Query: 121 PHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHA 180
P VWQMCLYM + N+Q+F NTGALVTCVKNFPESRG VIGLLK +GLSGAIMTQ YHA
Sbjct: 121 PKVWQMCLYMYLSTNAQAFSNTGALVTCVKNFPESRGGVIGLLKSFVGLSGAIMTQFYHA 180
Query: 181 VNGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVT 240
GDN+KALILLLA P V VF+ +RI+KI R NE K+FH F YI L LA +MV
Sbjct: 181 FYGDNSKALILLLAWFPACVSFVFLRVVRIMKIVRQANENKIFHKFFYISLGLASVLMVL 240
Query: 241 IIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPAL 300
IIIQ K FTR EY+ +A VVV+ L +P+A V+K+E ++ K K+ AL+ +
Sbjct: 241 IIIQKKFSFTRIEYVGSA-SVVVVLLLLPIAIVVKEEHDLRKSKKV-ALNGPSPLDVVTE 298
Query: 301 NVKTNFLTLFSL--------------KNVS------KKPERGDDYALLQAIFSIDMLILF 340
N+ LT SL K VS P RG+DY +LQA+FS+DML+LF
Sbjct: 299 NLPPVELTKLSLEQSTPPARAPTAAEKQVSCVTSIFNPPARGEDYGILQALFSVDMLVLF 358
Query: 341 TATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKY 400
AT C IGG L AIDN+GQIG++LGYP S A+F+SL+SIWN+LGR VAGFASEI L KY
Sbjct: 359 VATACGIGGTLTAIDNLGQIGQSLGYPARSTATFVSLVSIWNYLGRAVAGFASEILLTKY 418
Query: 401 KVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKH 460
K+PRPLL T+V+LFSC G+LLIAF V NSLYFAS+IIGFC GAQL L+ IISELFGLK+
Sbjct: 419 KIPRPLLFTIVLLFSCFGHLLIAFGVPNSLYFASVIIGFCFGAQLPLMFAIISELFGLKY 478
Query: 461 YSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKG---------GLNCIGARCYRVA 511
YSTLYN G+V+SP+GSY+ NV VAG LYD+EALKQ K L C G +CY+++
Sbjct: 479 YSTLYNFGAVASPVGSYVLNVIVAGHLYDKEALKQLKAKGLRMEAGQDLICYGVQCYKLS 538
Query: 512 FVTISAATFFACIVSIILVLRTKNFYQGDIYNKFKDEAEHIEN 554
F+ I+A T C++S++LVLRT+ FY+GDIY KF++E E
Sbjct: 539 FLIITAVTISGCLISLVLVLRTRKFYKGDIYRKFREEGVAAEK 581
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556866|ref|XP_002519466.1| conserved hypothetical protein [Ricinus communis] gi|223541329|gb|EEF42880.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/586 (58%), Positives = 431/586 (73%), Gaps = 36/586 (6%)
Query: 16 VKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLG 75
+K F L ++ RWFM FA+LLIMSVNG+SYM+ LYS IKSSLGYDQTTLN +SFFKDLG
Sbjct: 1 MKSFSLQVVSGRWFMVFASLLIMSVNGTSYMYGLYSGVIKSSLGYDQTTLNTLSFFKDLG 60
Query: 76 GNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGAN 135
GNLGV AGL +EV PPW+VL GS+MNF +F+IW++V+ R AKPHVWQMCLYM + N
Sbjct: 61 GNLGVSAGLIFEVMPPWVVLSIGSVMNFSAYFLIWIAVTGRV-AKPHVWQMCLYMCLATN 119
Query: 136 SQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLAC 195
+ S+PNT ALVT V+NFPESRG VIGLLKG IGLSGAIMTQIYHA G+++K+LILL+A
Sbjct: 120 AASYPNTAALVTSVRNFPESRGSVIGLLKGFIGLSGAIMTQIYHAFYGNDSKSLILLIAW 179
Query: 196 LPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYI 255
LP+ VP+ F+ TIRI K R ELKVF +FLYI LVLAGF+M+ I+QNKL+FTR EYI
Sbjct: 180 LPSFVPLAFLWTIRIKKDVRQAKELKVFCNFLYIALVLAGFLMIITIVQNKLKFTRPEYI 239
Query: 256 ATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALD-------AHYDQAIPALNVK----T 304
+A +V++L LF P A V+K+E N+WK K QAL+ A D + K +
Sbjct: 240 LSATIVLLL-LFFPFAIVVKEEFNLWKCKK-QALNNLSQLNVAAEDPTSTSPEAKLEPFS 297
Query: 305 NFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKAL 364
F +FS KN+ ++P+RG+DY +LQAIFSIDMLILF +TTC +GGALAAIDN+GQI +L
Sbjct: 298 CFKNIFSFKNIFRQPDRGEDYTILQAIFSIDMLILFISTTCGVGGALAAIDNLGQIANSL 357
Query: 365 GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF 424
GY + A+F+SL+SIWNFLGR++AGFASEI L KYK PRPL+LT VIL SC G++LIAF
Sbjct: 358 GYQAQNTATFLSLVSIWNFLGRVLAGFASEIVLTKYKFPRPLILTFVILISCTGHVLIAF 417
Query: 425 AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVA 484
V +SLYF+SIIIGFCLGAQL L+ +ISE+FGLKH+STLY+VGSVSSP+GSYIFNV+VA
Sbjct: 418 GVPSSLYFSSIIIGFCLGAQLPLVSVVISEIFGLKHFSTLYSVGSVSSPVGSYIFNVKVA 477
Query: 485 GRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYNK 544
G LYD+EALKQ + +G + + + ATF + SI LVLRT+ FY+GDIY
Sbjct: 478 GHLYDKEALKQ----MEALGIKREQGKELNCR-ATFLGFLASIGLVLRTRKFYRGDIYKN 532
Query: 545 FKDEAEHIENNDVSLTIDCVVPMKDMEAKANTGRAAVIDVAAEKEH 590
F+ V+P ++ AK N AA ++ + H
Sbjct: 533 FRKG---------------VIPSEESGAKDNV--AATLNHNQQINH 561
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570778|ref|XP_003553561.1| PREDICTED: uncharacterized protein LOC100798313 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/556 (58%), Positives = 411/556 (73%), Gaps = 25/556 (4%)
Query: 22 HLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVL 81
H+L RWFM FA+LLIM+ G++YMF +YSN++K+SLGYDQTTLNL SFFKD+G +G++
Sbjct: 7 HVLTGRWFMLFASLLIMAAAGAAYMFGMYSNEVKTSLGYDQTTLNLFSFFKDVGATVGII 66
Query: 82 AGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPN 141
+GL E+ PPW+VL G IMNFFG+FMI+L+V+ R AKP VWQMCLY+ IG+NSQ+F N
Sbjct: 67 SGLVNEITPPWVVLSIGVIMNFFGYFMIFLAVTGRI-AKPQVWQMCLYICIGSNSQTFAN 125
Query: 142 TGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD-NTKALILLLACLPTIV 200
TG VTCVKNFP SRG V+GLLKG +GLSGAI+ Q+YHA GD N +ALILL+A LP V
Sbjct: 126 TGGTVTCVKNFPGSRGNVLGLLKGYVGLSGAIIAQLYHAFYGDHNPQALILLIAWLPAAV 185
Query: 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALV 260
+F+PTIRI NE KVF+ LYI LVLAGF+MV II+QNKLRFTR EYIA V
Sbjct: 186 SFLFLPTIRIFNTVHHPNENKVFYHLLYISLVLAGFLMVLIIMQNKLRFTRPEYIADG-V 244
Query: 261 VVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYD---QAIPALNV---------KTNFLT 308
VV L +PL V ++E+N K K Q L + IP NV ++
Sbjct: 245 VVFFFLLLPLVVVFREEINQLKA-KTQGLTDSVKVVTEVIPPPNVVEQEVPSTTTSSHEK 303
Query: 309 LFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPT 368
N+ K P+RG+DY +LQA+FSIDMLILF ATT GGAL AIDN+GQIG++LGYP
Sbjct: 304 SSCFGNILKPPKRGEDYTILQALFSIDMLILFIATTFGAGGALTAIDNLGQIGRSLGYPR 363
Query: 369 HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHN 428
SI + +SL+SIWN+LGR+VAG+ASEIFL KYK+PRP +LTLV+L SC+G++LIA N
Sbjct: 364 KSITTCVSLLSIWNYLGRVVAGYASEIFLTKYKLPRPYMLTLVLLLSCVGHILIAIGAPN 423
Query: 429 SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLY 488
SLY AS+IIGFCLGAQ L+ IISE+FGLK+YSTL+N G+V+SP+GSYI NV+VAG LY
Sbjct: 424 SLYLASVIIGFCLGAQWPLMFAIISEIFGLKYYSTLFNFGAVASPVGSYILNVKVAGVLY 483
Query: 489 DREALKQGKG---------GLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQG 539
D+EALKQ K L C+G +CY++AF+ I+A+T FACIVS +LV+RT+ FY+G
Sbjct: 484 DKEALKQLKAKGLTREEGKDLTCVGVQCYKMAFIIITASTLFACIVSFVLVVRTRKFYKG 543
Query: 540 DIYNKFKDEAEHIENN 555
DIY KF+ E E EN
Sbjct: 544 DIYRKFRVEHETGENE 559
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572482|ref|XP_003554397.1| PREDICTED: uncharacterized protein LOC100818752 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/579 (56%), Positives = 425/579 (73%), Gaps = 30/579 (5%)
Query: 1 MVMSKFNCIGANWREVKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGY 60
MV+++F G R +K F H+L RWFM FA+LLIMSV G++YMF +YSN++K+SLGY
Sbjct: 1 MVVAEFTSGG--LRGMKAFSYHVLTGRWFMLFASLLIMSVAGATYMFGIYSNEVKTSLGY 58
Query: 61 DQTTLNLVSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAK 120
DQ+TLNL+SFFKDLG N+GV++GL EV PP++VL G IMNFFG+FMI+L+VS R AK
Sbjct: 59 DQSTLNLLSFFKDLGANVGVISGLVNEVTPPFVVLSIGVIMNFFGYFMIFLAVSGRI-AK 117
Query: 121 PHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHA 180
P VWQMCLY+ IGANSQ+F NTGALVTCVKNFP SRG ++GLLKG +GLSGAI+TQ+YHA
Sbjct: 118 PQVWQMCLYICIGANSQTFANTGALVTCVKNFPGSRGSILGLLKGYVGLSGAIITQLYHA 177
Query: 181 VNGD-NTKALILLLACLPTIVPIVFIPTIRIIK--IARPENELKVFHSFLYILLVLAGFI 237
G+ N++ALILL+A LP V +F+PTIRI+ + +P+ +VF+ LYI L LA F+
Sbjct: 178 FYGNHNSQALILLIAWLPAAVSSLFLPTIRIMNTVLHQPKEGNRVFYHLLYISLGLAAFL 237
Query: 238 MVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYD--- 294
MV I++QNKL F+R EYI LVV L +PL V ++E+N K N D+
Sbjct: 238 MVLILVQNKLSFSRIEYIVDGLVVFFF-LLLPLVVVFREEINQLKANTQCLTDSPPQLKV 296
Query: 295 --QAIPALNVKTNFLTLFS---------LKNVSKKPERGDDYALLQAIFSIDMLILFTAT 343
+AIP NV+ + + L+N+ P+RG+DY +LQA+FSIDMLILF AT
Sbjct: 297 VTEAIPPPNVEQEEVPPTTTSSHEKSSCLRNIFNPPKRGEDYTILQALFSIDMLILFIAT 356
Query: 344 TCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVP 403
T GG L AIDN+GQIG +LGYP S +F+SL+SIWN+LGR+ +G+ASEIFL KYK+P
Sbjct: 357 TFGAGGTLTAIDNLGQIGHSLGYPNKSTTTFVSLVSIWNYLGRVASGYASEIFLTKYKIP 416
Query: 404 RPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYST 463
RP +LTLV+L SC+G++LIA V NSLYFAS+IIGFC GAQ L+ IISE+FGLK+YST
Sbjct: 417 RPYMLTLVLLVSCVGHVLIALGVPNSLYFASVIIGFCFGAQWPLMFAIISEVFGLKYYST 476
Query: 464 LYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKG---------GLNCIGARCYRVAFVT 514
LYN G+ +SP+GSYI NV+VAG LYD+EALKQ K L C+G +CY++AF+
Sbjct: 477 LYNFGAAASPLGSYILNVKVAGVLYDKEALKQLKAKGLTREEGKDLTCVGVQCYKMAFII 536
Query: 515 ISAATFFACIVSIILVLRTKNFYQGDIYNKFKDEAEHIE 553
I+A+T C+ S+IL LRT+ FY+GDIY KF+ E E +E
Sbjct: 537 ITASTLVGCLASVILALRTRKFYKGDIYRKFRMEHEAME 575
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | ||||||
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.889 | 0.886 | 0.538 | 6e-151 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.888 | 0.922 | 0.513 | 5e-147 | |
| TAIR|locus:2011241 | 526 | AT1G18940 [Arabidopsis thalian | 0.839 | 0.956 | 0.352 | 2e-79 | |
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.843 | 0.947 | 0.356 | 5.4e-79 | |
| TAIR|locus:1005716659 | 523 | AT2G34355 [Arabidopsis thalian | 0.834 | 0.956 | 0.334 | 2.7e-77 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.846 | 0.928 | 0.332 | 6.3e-76 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.365 | 0.386 | 0.411 | 8.5e-75 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.378 | 0.392 | 0.364 | 3.7e-74 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.838 | 0.956 | 0.322 | 1.6e-72 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.377 | 0.386 | 0.355 | 2.9e-71 |
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
Identities = 301/559 (53%), Positives = 382/559 (68%)
Query: 16 VKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLG 75
+K + +L RWFMFF +LLIMS G++YMF +YS DIK +LGYDQTTLNL+SFFKDLG
Sbjct: 10 MKSLTIQILTGRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKDLG 69
Query: 76 GNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGAN 135
N+GVLAGL EV PPW +LL G+I+NFFG+FMIWL+V+ R +KP VW MCLY+ +GAN
Sbjct: 70 ANVGVLAGLLNEVTPPWFILLIGAILNFFGYFMIWLAVTERI-SKPQVWHMCLYICVGAN 128
Query: 136 SQSFPNTGALVTCVKNFPESRXXXXXXXXXXXXXSGAIMTQIYHAVNGDNTKALILLLAC 195
SQSF NTG+LVTCVKNFPESR SGAI+TQ+Y A G++TK LIL++
Sbjct: 129 SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIGW 188
Query: 196 LXXXXXXXXXXXXXXXXXARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYI 255
L R NELKVF++FLYI L LA F+MV III FT+SE+
Sbjct: 189 LPAIVSFAFLRTIRIMKVKRQTNELKVFYNFLYISLGLATFLMVVIIINKLSGFTQSEFG 248
Query: 256 ATALVVVVLSLFIPLAAVIKQE---------LN-------IWKGNKLQALDAHYDQAIPA 299
+A VV+VL L + +++++ LN + + KL + + D +
Sbjct: 249 GSAAVVIVLLLLPIIVVILEEKKLWKEKQVALNDPAPINVVTEKPKLDSSEFKDDDGEES 308
Query: 300 LNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQ 359
V T V PERGDDY +LQA+FS+DMLILF AT C +GG L AIDN+GQ
Sbjct: 309 KEVVEKVKTPSCWTTVFNPPERGDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQ 368
Query: 360 IGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419
IG +LGYP S+++F+SL+SIWN+ GR+V+G SEIFL KYK PRPL+LT+V+L SC G+
Sbjct: 369 IGNSLGYPKRSVSTFVSLVSIWNYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGH 428
Query: 420 LLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIF 479
LLIAF V LY AS+IIGFC GAQ LL IISE+FGLK+YSTLYN GSV+SPIGSY+
Sbjct: 429 LLIAFNVPGGLYVASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLL 488
Query: 480 NVRVAGRLYDREALKQ----GK----G-GLNCIGARCYRVAFVTISAATFFACIVSIILV 530
NVRVAG LYD EA KQ GK G LNCIG C++++F+ I+A T F +VS++LV
Sbjct: 489 NVRVAGYLYDVEAGKQYKALGKTRVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLV 548
Query: 531 LRTKNFYQGDIYNKFKDEA 549
+RTK FY+ DIY KF+++A
Sbjct: 549 IRTKKFYKSDIYKKFREKA 567
|
|
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1436 (510.6 bits), Expect = 5.0e-147, P = 5.0e-147
Identities = 287/559 (51%), Positives = 376/559 (67%)
Query: 15 EVKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDL 74
E F +H + RWFM FA+ LIM+ G++Y+F YS DIKS+LGYDQTTLNL+ FFKDL
Sbjct: 5 ETVRFLIHFFNGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDL 64
Query: 75 GGNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGA 134
G N+GVL+GL EV P W VL GS MNF G+FMIWL+V+ + AKP VWQMCLY+ IGA
Sbjct: 65 GANVGVLSGLIAEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKV-AKPKVWQMCLYICIGA 123
Query: 135 NSQSFPNTGALVTCVKNFPESRXXXXXXXXXXXXXSGAIMTQIYHAVNGDNTKALILLLA 194
NSQ+F NTGALVTCVKNFPESR SGAI TQ+Y A+ G ++K+LILL+A
Sbjct: 124 NSQNFANTGALVTCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIA 183
Query: 195 CLXXXXXXXXXXXXXXXXXARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEY 254
L R NEL VF+ FLYI + LA F+M I + ++ F+++ Y
Sbjct: 184 WLPAAVSLVFVYLIREKKVVRQRNELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAY 243
Query: 255 IATALVVVVLSLFIPLAAVIKQELNIWKGNKL--------------QALDAHYDQAIPAL 300
A+A + L LF+PL +KQEL +W KL + LD D+A
Sbjct: 244 AASATICCAL-LFVPLTVSVKQELEVWNMMKLPIEEPSEVKVEKPKKELDLDQDKAAKVN 302
Query: 301 NVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360
+ + FS V P RG+DY +LQA+ S DM+ILF AT C +G +L A+DN+GQI
Sbjct: 303 GEEKETKSCFS--TVFSPPPRGEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQI 360
Query: 361 GKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL 420
G++LGYP H+++SF+SL+SIWN+ GR+ +GF SE LAKYK+PRPL++TLV+L SC G+L
Sbjct: 361 GESLGYPNHTVSSFVSLVSIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHL 420
Query: 421 LIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFN 480
LIAF V S+Y ASI++GF GAQL LL IISELFGLK+YSTL+N G ++SP+GSYI N
Sbjct: 421 LIAFPVPGSVYIASILMGFSFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILN 480
Query: 481 VRVAGRLYDREALKQ--GKG-------GLNCIGARCYRVAFVTISAATFFACIVSIILVL 531
VRV G LYD+EALKQ +G L C+G++CY++ F+ ++A TFF +VS+ L +
Sbjct: 481 VRVTGMLYDKEALKQLTARGLTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAI 540
Query: 532 RTKNFYQGDIYNKFKDEAE 550
RT+ FY+GDIY KF++ E
Sbjct: 541 RTREFYKGDIYKKFRESPE 559
|
|
| TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 189/536 (35%), Positives = 292/536 (54%)
Query: 23 LLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLA 82
+L ++W A++ I G SY F +YS +KS+ YDQ+TL+ VS FKD+GGN+GVL+
Sbjct: 5 ILRTKWMAMTASIWIQCSAGGSYTFGIYSAILKSTQSYDQSTLDTVSVFKDIGGNVGVLS 64
Query: 83 GLTYEVAP--------------PWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCL 128
GL Y A PW+V+L G+I+NF G+F++W SV+ +P V MCL
Sbjct: 65 GLVYTAATFNRRRRDGRERRGGPWVVILIGAILNFTGYFLMWASVTGLI-KRPPVPVMCL 123
Query: 129 YMLIGANSQSFPNTGALVTCVKNFPESRXXXXXXXXXXXXXSGAIMTQIYHAVNGDNTKA 188
+M I A S +F NT +V+ ++NF + SGA++ Q+Y V + K
Sbjct: 124 FMFIAAQSLTFLNTANVVSSLENFADYGGTAVGIMKGFVGLSGAMLIQLYEVVCPGDPKT 183
Query: 189 LILLLACLXXXXXXXXXXXXXXXXXARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLR 248
ILLLA + + + E K + L++A ++M+TII+++ L
Sbjct: 184 FILLLAIVPSLLSVLVMPLVRVYKTSTVD-EKKHLDGLSTLSLIIAAYLMITIILKSTLS 242
Query: 249 FTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLT 308
T V++VL L PL ++ + + + L + Y + L T+
Sbjct: 243 LPSWANAVTLAVLLVL-LSSPLLVAVRAH----RDSIEKPLSSVYSPLVDNLEATTSGEI 297
Query: 309 LFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPT 368
L ++ S LLQA+ ++D +LF A C +G ++ I+N+ QIG++L Y +
Sbjct: 298 LMLDEDKSLN--------LLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTS 349
Query: 369 HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHN 428
I S ++L +IWNF+GR G+ S+ L + PRPLL+ + IG+L+IA
Sbjct: 350 VEINSLLALWNIWNFIGRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQG 409
Query: 429 SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLY 488
+LY SII+G C G+Q SL+ TI SELFG+KH T+YN S++SP+GSYIF+VR+ G +Y
Sbjct: 410 NLYPGSIIVGICYGSQWSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIY 469
Query: 489 DREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYNK 544
DR + +G C G C+R+A+V I++ F +VS +LV RTK Y+ I+ K
Sbjct: 470 DRTIIGEGN---TCYGPHCFRLAYVVIASVAFLGFLVSCVLVFRTKTIYR-QIFEK 521
|
|
| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 191/536 (35%), Positives = 296/536 (55%)
Query: 21 LHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGV 80
+ +L ++W A++ I +G+SY F +YS +KS+ YDQ+TL+ VS FKD+G N GV
Sbjct: 1 MEILRTKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGV 60
Query: 81 LAGLTYEVAP----------------PWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVW 124
+GL Y A PW+VL G+I F G+F+IW SV+ KP V
Sbjct: 61 FSGLLYTYATSNRLRGRGGGIGGAGGPWVVLAVGAIQCFAGYFLIWASVTGLI-RKPPVP 119
Query: 125 QMCLYMLIGANSQSFPNTGALVTCVKNFPESRXXXXXXXXXXXXXSGAIMTQIYHAVNGD 184
MCL+M + A SQ+F NT +V+ V+NF + SGAI+ Q+Y +
Sbjct: 120 LMCLFMFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAG 179
Query: 185 NTKALILLLACLXXXXXXXXXXXXXXXXXARPENELKVFHSFLYILLVLAGFIMVTIIIQ 244
+ + ILLLA + +++ K + + L++A ++M+ II++
Sbjct: 180 DPASFILLLAVTPTVLSLLVMPLVRIYETSVADDK-KHLNGLSAVSLIIAAYLMIIIILK 238
Query: 245 NKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKT 304
N + I T LV +++ L +PL + + + G + + + Y I + T
Sbjct: 239 NTFGLSSWANIVT-LVCLLVMLALPLLIARRAQRD---GME-KTVPHDYSPLISSPKATT 293
Query: 305 NFLTLFSLKNVSKKPERG--DDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGK 362
+ S + SK E G ++ LLQA+ + +LF A C +G L+ I+N+ QIG+
Sbjct: 294 SGNQ--SSEGDSKV-EAGLSENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGE 350
Query: 363 ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLI 422
+L Y + I S +SL SIWNFLGR AG+AS+ L K PRPLL+ + IG+L+I
Sbjct: 351 SLRYSSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLII 410
Query: 423 AFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVR 482
A +LY S+I+G C G+Q SL+ TI SELFG++H T++N SV+SPIGSYIF+VR
Sbjct: 411 ASGFQGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVR 470
Query: 483 VAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQ 538
+ G +YD+ A G+G C G+ C+R++F+ +++ FF +V+I+L RTK Y+
Sbjct: 471 LIGYIYDKTA--SGEGN-TCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYR 523
|
|
| TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 176/526 (33%), Positives = 285/526 (54%)
Query: 24 LDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAG 83
++++W A++ I S +G++Y FA+YS+ +KSS YDQ+TL+ VS FKD+GG G+++G
Sbjct: 4 INTKWVAAAASIWIQSFSGATYTFAIYSSILKSSQSYDQSTLDFVSVFKDIGGTFGIISG 63
Query: 84 LTYEVAP--------PWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGAN 135
Y PW+V+ G + F GFF IW SV A P V MCL++ + +
Sbjct: 64 FLYTAMTSKSRGFGGPWVVVFVGLVQWFVGFFFIWASVVGLI-APPPVPLMCLFVFLAGH 122
Query: 136 SQSFPNTGALVTCVKNFPESRXXXXXXXXXXXXXSGAIMTQIYHAV-NGDNTKALILLLA 194
S F NT +VT +NF + SGAI+ Q+YHAV G+ A +LL
Sbjct: 123 SLPFFNTANVVTAARNFSQYGGTAVGIMQGFLGLSGAILIQLYHAVCGGEGNPATFILLL 182
Query: 195 CLXXXXXXXXXXXXXXXXXARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEY 254
+ ++ K I +++A ++MV I ++N L +RS
Sbjct: 183 AIVPTLVMFLAMPFVRVYETVTISDKKHLDGLSAISMIIAAYLMVVITVENVLGLSRSMQ 242
Query: 255 IATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKN 314
I + ++V++L L PL ++ K L +LD P L+ T+ L N
Sbjct: 243 IFSFILVLLL-LASPLLVAVRALRE--KRQTLSSLDG------PVLD--TSALLDPPSSN 291
Query: 315 VSKKPER--GDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIA 372
+ + +D +L+A+ +++ +LF A C +G A ++NM QIG++L Y + +
Sbjct: 292 IFPDGDHLVAEDSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLN 351
Query: 373 SFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYF 432
S +SL SIWNFLGR AG+ S+ FL K+ PRP+ + + + IG++++A V SLY
Sbjct: 352 SLVSLWSIWNFLGRFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYA 411
Query: 433 ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREA 492
S++IG G+Q SL+ TI SE+FG++H T+Y S++ PIGSYI +V+V G YD+ A
Sbjct: 412 GSVLIGMAYGSQWSLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYFYDKVA 471
Query: 493 LKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQ 538
+ +C G++C+R +F+ +++ F +V+ +L RT FY+
Sbjct: 472 SEDDN---SCFGSQCFRTSFMIMASVALFGSLVASVLFFRTHKFYK 514
|
|
| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 173/520 (33%), Positives = 276/520 (53%)
Query: 27 RWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTY 86
+W F + + S++G++Y F+ YS +KS + +Q LN +S KD+G G+LAGL
Sbjct: 14 KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKDVGKAFGILAGLAS 73
Query: 87 EVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALV 146
+ P ++LL G G+ + WL VS P+ WQMC+++ +G NS ++ NT LV
Sbjct: 74 DRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPY-WQMCIFLCMGGNSTTWMNTAVLV 132
Query: 147 TCVKNFPESRXXXXXXXXXXXXXSGAIMTQIYHAVNGDNTKALILLLACLXXXXXXXXXX 206
TC++NF +R S AI T + A+ ++ + ++LLA +
Sbjct: 133 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLAVVPFAVCLTAVF 192
Query: 207 XXXX---XXXARPENE-LKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVV 262
A ENE + F F + +V+A ++ II K + + L ++
Sbjct: 193 FLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVFSVAFASILLFLL 252
Query: 263 VLSLFIPLAAVIKQELNIWKGNKLQAL--DAHYDQAIPALNVKTNFLTLFSLKNVSKK-- 318
+ IP + IK LN + + L+ + I A + + + + KK
Sbjct: 253 ASPIAIPFHSFIKS-LNYGEQDDLEGRIQEPLLRSEIAAAEKEVIVVAAVAAEEEEKKRK 311
Query: 319 -PERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISL 377
P G+D+ +++A+ ++D +LF + C +G LA ++NMGQIG ALGY SI F+S+
Sbjct: 312 KPVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSI--FVSM 369
Query: 378 ISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIII 437
SIW F GRI++G SE FL K PRPL + +GY+L+A AV NSLY S+++
Sbjct: 370 TSIWGFFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVV 429
Query: 438 GFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGK 497
G C G +L++ V SELFGLK+Y +YN+ ++ P+GS++F+ +AG LYD EA
Sbjct: 430 GVCYGVRLAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLLAGFLYDAEATPTPG 489
Query: 498 GGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFY 537
GG C+GA CYR+ F+ ++ A+ + ++L RTK Y
Sbjct: 490 GGNTCVGAHCYRLIFIVMALASVIGVGLDLVLAYRTKEIY 529
|
|
| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 91/221 (41%), Positives = 141/221 (63%)
Query: 317 KKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFIS 376
K+P G+++ +++A+ ++D +LF + C +G LA ++NMGQIG ALGY SI F+S
Sbjct: 332 KRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTDVSI--FVS 389
Query: 377 LISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASII 436
+ SIW F GRI++G SE F+ K PRPL + +GYLL+A A+ SLY S++
Sbjct: 390 MTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGSLYIGSMV 449
Query: 437 IGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG 496
+G C G +L++ V SELFGLK+Y +YN+ ++ P+GS++F+ +AG LYD EA
Sbjct: 450 VGVCYGVRLAITVPTASELFGLKYYGLIYNILILNMPLGSFLFSGLLAGLLYDAEATPTP 509
Query: 497 KGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFY 537
GG C+GA C+R+ F+ ++ A+ + ++L RTK Y
Sbjct: 510 GGGNTCVGAHCFRIVFIVMAFASIIGVGLDLLLAYRTKGIY 550
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 87/239 (36%), Positives = 139/239 (58%)
Query: 314 NVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYP-THSIA 372
N + P RG+D+ L QA+ D ++F + G L IDN+GQ+ ++LGY TH +
Sbjct: 342 NRRRGPHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVL- 400
Query: 373 SFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYF 432
+S+ISIWNFLGRI G+ SE+ + Y PRP+ + + L +G++ A+ ++Y
Sbjct: 401 --VSMISIWNFLGRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYI 458
Query: 433 ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREA 492
+++IG GA +++ SELFGLK + LYN ++++P GS +F+ +A +YDREA
Sbjct: 459 GTLLIGLGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREA 518
Query: 493 LKQGKGG-------LNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYNK 544
+Q G L C G+ C+ + + +S AC++S+ILV RTK+ Y +Y K
Sbjct: 519 ERQAHGSVFDPDDALRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVYT-HLYGK 576
|
|
| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 171/530 (32%), Positives = 286/530 (53%)
Query: 21 LHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGV 80
+ +++W A++ I S +G+SY F +YS+ +KSS YDQ+TL+ VS +KD+G N+G+
Sbjct: 1 MEFANTKWVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGI 60
Query: 81 LAGLTYE-VAP-----------PWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCL 128
L+GL Y VA PW+V+ G + F G+ IW++ S +P V MCL
Sbjct: 61 LSGLFYTAVASRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVI-PRPPVAMMCL 119
Query: 129 YMLIGANSQSFPNTGALVTCVKNFPESRXXXXXXXXXXXXXSGAIMTQIYHAVNGDNTKA 188
+M + Q F NT +VT V+NF + SGAI+ Q+YH G + +
Sbjct: 120 FMFFAGHCQPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRN 179
Query: 189 LILLLACLXXXXXXXXXXXXXXXXXARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLR 248
ILLLA + ++ K + I L++ ++MV I+++N +
Sbjct: 180 YILLLAVVPSLLILTLMPFVRTYDTVIAGDK-KHLNGLSAISLIIVTYLMVVILVENIIG 238
Query: 249 FTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLT 308
+ I + +++L L PL ++ + + ++ +LD P +T L
Sbjct: 239 MSMPMKICSFTFLLLL-LASPLLVAVRAQRE--EEHRFLSLD------FPVTE-RTTLLD 288
Query: 309 LFSLKNVSK-KPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYP 367
L + S K +D +L+AI + + +LF A C +G LA I+N+ Q+G++L Y
Sbjct: 289 SPKLNSSSDVKDVMTNDMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYS 348
Query: 368 THSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVH 427
T + S +SL SIWNFLGR +G+ S+ +L + PRP+ + + + IG++++A +
Sbjct: 349 TVQLNSLVSLWSIWNFLGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLL 408
Query: 428 NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRL 487
SLY S+++G G+Q SL+ TI SE+FG+ H T++ S++SP+GSY F+V+V G L
Sbjct: 409 GSLYIGSLLVGLAYGSQWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYL 468
Query: 488 YDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFY 537
YD+ A + +C G C+R +F+ ++A +V+++L+LRTK FY
Sbjct: 469 YDKVASEDDH---SCYGNHCFRTSFLIMAAMALLGSLVALVLLLRTKKFY 515
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| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
Identities = 84/236 (35%), Positives = 137/236 (58%)
Query: 319 PERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLI 378
P RG+D+ L QA+ D ++F + G L IDN+GQ+ ++LGY + F+S+I
Sbjct: 352 PHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--FVSMI 409
Query: 379 SIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIG 438
SIWNFLGRI G+ SE+ + Y PRP+ + + L +G++ A+ +++ +++IG
Sbjct: 410 SIWNFLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIG 469
Query: 439 FCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKG 498
GA +++ SELFGLK + LYN ++++P GS +F+ +A +YDREA +Q +G
Sbjct: 470 LGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQG 529
Query: 499 GL-------NCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYNKFKD 547
L C G+ CY + + +S A +S+ILV RTK Y ++Y K ++
Sbjct: 530 SLFNPDDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYT-NLYGKTRN 584
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_II001221 | hypothetical protein (559 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 599 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 2e-90 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 8e-10 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 0.002 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 2e-90
Identities = 105/250 (42%), Positives = 153/250 (61%), Gaps = 4/250 (1%)
Query: 27 RWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTY 86
RW A + I S G++Y F+LYS+ +KSSLGY Q LNL+ KDLG N G L+GL
Sbjct: 1 RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60
Query: 87 EVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALV 146
E PPW+VLL G+ M F G+ + WL+V+ + W +CL + + NS + NT +LV
Sbjct: 61 EYLPPWVVLLVGAAMGFVGYGVQWLAVTGK-IPGLPYWLLCLAICLAGNSICWFNTASLV 119
Query: 147 TCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIP 206
TC++NFPESRGVV+G+LKG GLS AI TQ+Y A+ G++ +L+LL A +P +V +V +
Sbjct: 120 TCIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALY 179
Query: 207 TIRII--KIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVL 264
IR K+ +E VF F + + LA +++ I+ + +EY A ++V+L
Sbjct: 180 FIRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLL 239
Query: 265 SLFIPLAAVI 274
L +PLA I
Sbjct: 240 -LLVPLAVPI 248
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This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-10
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 13/166 (7%)
Query: 321 RGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISI 380
DY + + + + +L+ + + L I G++LG + +S+ SI
Sbjct: 192 SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSI 251
Query: 381 WNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVH-NSLYFASIII-- 437
+N GR G S+ K+ R +++V S +G + F N + F + +
Sbjct: 252 FNGGGRPFLGALSD------KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305
Query: 438 GFCLGAQLSLLVTIISELFGLKH----YSTLYNVGSVSSPIGSYIF 479
F G +SL +++S++FG + Y LY +V+ G I
Sbjct: 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351
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This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 143 GALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPI 202
GA+VT + FP +RG V+ ++K GL AI+ I A DNT A L +V I
Sbjct: 140 GAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGI 199
Query: 203 VFIPTIRI 210
+ I +R+
Sbjct: 200 LAIVFMRL 207
|
Length = 591 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.98 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.98 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.98 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.98 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.97 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.96 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.94 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.94 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.94 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.93 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.93 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.93 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.93 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.93 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.92 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.92 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.92 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.91 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.91 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.91 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.91 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.91 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.9 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.9 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.9 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.88 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.88 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.88 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.87 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.86 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.84 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.84 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.84 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.81 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.8 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.79 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.79 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.78 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.78 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.77 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.77 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.76 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.74 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.71 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.69 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.69 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.59 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.52 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.49 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.42 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.38 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.37 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.34 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.33 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.32 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.31 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.31 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.3 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.3 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.3 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.3 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.29 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.29 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.28 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.28 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.28 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.28 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.28 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.28 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.27 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.26 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.26 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.24 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.23 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.23 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.22 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.22 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.22 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.21 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.2 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.2 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.2 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.2 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.2 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.19 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.19 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.18 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.18 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.18 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.18 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.18 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.18 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.16 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.16 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.16 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.15 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.15 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.15 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.14 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.14 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.12 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.11 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.11 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.11 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.1 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.1 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.1 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.1 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.09 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.07 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.04 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.04 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.04 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.03 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.03 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.02 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.02 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.01 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.01 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.0 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.98 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.92 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.9 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.88 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.86 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.85 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.84 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.83 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.82 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.81 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.8 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.79 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.78 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.75 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.74 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.73 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.71 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.71 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.69 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.66 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.66 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.64 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.64 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.63 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.62 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.58 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.57 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.57 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.56 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.52 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.5 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.49 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.45 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.4 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.37 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.37 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.37 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.32 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.3 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.29 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.27 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.25 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.23 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.23 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.23 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.15 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.14 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.11 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.06 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.05 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.0 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.99 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.98 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.94 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.89 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.8 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.78 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.76 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.76 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.75 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.71 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.54 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.46 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.45 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.37 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.31 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.22 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.22 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.06 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.03 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.03 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.68 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.68 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.63 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.38 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.37 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.29 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.28 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.5 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.47 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.36 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.34 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.23 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.15 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.99 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.99 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.27 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 92.05 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 90.87 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 90.0 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 89.88 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 88.41 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 86.31 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 81.94 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 81.12 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=404.37 Aligned_cols=513 Identities=18% Similarity=0.238 Sum_probs=404.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhcccCChHHHHHHHHHHH
Q 047229 24 LDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSIMNF 103 (599)
Q Consensus 24 ~~~~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~~~~ 103 (599)
..+||.++.++++++.+.|..|.++++.|++++++|+|.++++++.........+++++|++.||+|||++++++.+++.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 36899999999999998999999999999999999999999999766655555568789999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcC
Q 047229 104 FGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNG 183 (599)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~ 183 (599)
+|+++++++..... .++++.++++|+++|+|.+..++.+...+.+|||++||+++|+...+.++|+++.+++...++.
T Consensus 103 iG~ll~ala~~~~i--~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 103 LGTLLFALTFQEVI--EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHhcccc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887644432 2579999999999999999999999999999999999999999999999999998888888777
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhccccccccC--------Ccchhh-----------------hHHHHHHHHHHHHHHHH
Q 047229 184 DNTKALILLLACLPTIVPIVFIPTIRIIKIAR--------PENELK-----------------VFHSFLYILLVLAGFIM 238 (599)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~-----------------~~~~~~~~~~~~~~~~~ 238 (599)
.+++.++++++++++++.+++..+++.+|+.. ..+++. +|....++.+.+++++.
T Consensus 181 ~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~ 260 (591)
T PTZ00207 181 DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLP 260 (591)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHH
Confidence 66778899999999999999988888876432 122233 56666667788899999
Q ss_pred HHHHHhcccccCchhhhHHHHHHHHHHhhcc-hhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCC
Q 047229 239 VTIIIQNKLRFTRSEYIATALVVVVLSLFIP-LAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSK 317 (599)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (599)
+..++..+++.++..+...+.+.+++++..| +.++.+.... ..+++ ++..+. .+.++.+.+..+.+.. ...++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 336 (591)
T PTZ00207 261 LQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDG-KRPHD-DSDGKA-KEHVEAGEEVSAAEDK-VVETDVD 336 (591)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc-CCcCC-Cccccc-cccccccccccccccc-ccccccc
Confidence 9999998889999999888887634777777 5555543111 11110 000000 0000000000000000 0000001
Q ss_pred CCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHc-CCCCcc--hhhhHHHHHHHHHHHHHHhhhhhh
Q 047229 318 KPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKAL-GYPTHS--IASFISLISIWNFLGRIVAGFASE 394 (599)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~i~~~ig~~~~g~l~d 394 (599)
...++...++++.+++.+||+++..++|..+.+..+++|+.++.+.+ |++..+ ...++++.++.+.+||+..|+++.
T Consensus 337 ~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~ 416 (591)
T PTZ00207 337 YIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI 416 (591)
T ss_pred CCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH
Confidence 01112223899999999999999999999999999999999999999 874333 333789999999999999999985
Q ss_pred hhhhhc---cCCchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhc
Q 047229 395 IFLAKY---KVPRPLLLTLVILFSCIGYLLIAFAVH-NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSV 470 (599)
Q Consensus 395 r~g~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~ 470 (599)
.+.+|+ +++|...+.+..+ +.++.+++....+ ..+++..+++|+++|..+++.+..++|+|+ ++.|+.|.+..+
T Consensus 417 ~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~ 494 (591)
T PTZ00207 417 WSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFL 494 (591)
T ss_pred HHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhH
Confidence 544443 2788888888777 7776666665555 789999999999999999999999999999 999999999999
Q ss_pred cchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 047229 471 SSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYNKFK 546 (599)
Q Consensus 471 ~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 546 (599)
..-+|+.+++..++|.+||+++++.+ +..|.|..||+.+|.+++++++++.+....++.|+|+.+++..++|.+
T Consensus 495 a~pigs~~~n~~l~G~~Yd~ea~k~~--~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~~~~ 568 (591)
T PTZ00207 495 GSVLSAIFLNRLLYGEWYTQQADKLG--QDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKALEERRR 568 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC--CCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHHHHHHH
Confidence 99999999999999999999987643 458999999999999999999999999999999999988766555543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=291.14 Aligned_cols=412 Identities=12% Similarity=0.041 Sum_probs=263.3
Q ss_pred hHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHH
Q 047229 27 RWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFF 104 (599)
Q Consensus 27 ~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~ 104 (599)
.|.++...++..+.... ...+++..|.+.+++|++.++.+++.+.+.+++.+ +++.|+++||+|||+++.++.++.++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 44444444444433332 56678889999999999999999987777777755 99999999999999999999888888
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcC
Q 047229 105 GFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNG 183 (599)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~ 183 (599)
+.+.+++..+... ++++.++++|+++|++.+...+....++.+|+| ++||+++|+...+.++|+++++++......
T Consensus 107 ~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 107 CMLGFGASLGSGS---VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHhccc---chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 7766655444434 789999999999999999999999999999997 569999999999999999998777544322
Q ss_pred C----ChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHH
Q 047229 184 D----NTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATAL 259 (599)
Q Consensus 184 ~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (599)
. +++..+.+.+.+.++++++..+++
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~--------------------------------------------------- 212 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGLRYG--------------------------------------------------- 212 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHhC---------------------------------------------------
Confidence 1 111111111111111111111111
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHH
Q 047229 260 VVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLIL 339 (599)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (599)
++.+++....++++. .++ +.+ ++ . +..++++....+...++.++++.+|..
T Consensus 213 ---------------~~~p~~~~~~~~~~~---~~~-~~~----~~-----~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (467)
T PRK09556 213 ---------------SDSPEELGWGKAEEI---FGE-PIS----EE-----D-KETESTDMTKWQIFVEYVLKNPVIWLL 263 (467)
T ss_pred ---------------CCChhhcCCCChhhc---ccC-ccc----hh-----h-hccccccCcHHHHHHHHHHcChHHHHH
Confidence 111111000000000 000 000 00 0 000000000000012347899999999
Q ss_pred HHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 047229 340 FTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIG 418 (599)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 418 (599)
.+..++..........++|.|+++ .|++..+++...+...++..+++++.|+++||+++|+ .......+..++
T Consensus 264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~------~~~~~~~~~~~~ 337 (467)
T PRK09556 264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR------ALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHH
Confidence 888888777767777889988866 6999999999999999999999999999999998774 112111111122
Q ss_pred H--HHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhc
Q 047229 419 Y--LLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQ 495 (599)
Q Consensus 419 ~--~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~ 495 (599)
. +.+... +....++..++.|++...........+.|.+|++.+|++.|+.+....+++..++|.+.|.+.|......
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~ 417 (467)
T PRK09556 338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT 417 (467)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence 1 122222 2223334555566544333334446777999999999999999988887333489999999999211000
Q ss_pred CCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 496 GKGGLNCIGARCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 496 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
...+ ....+|+..|++..++.+++.+..+++.
T Consensus 418 ~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 418 PIFG---YTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred cccc---ccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0013599999999888888877766554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=262.74 Aligned_cols=406 Identities=13% Similarity=0.096 Sum_probs=294.3
Q ss_pred hhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHH
Q 047229 24 LDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIM 101 (599)
Q Consensus 24 ~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~ 101 (599)
++.||.+++..++....... ...|+...|++.++.++|.+|++.+.+.+.+.+.+ ..+.|.++||.++|..+.+|+++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 34566666655555444443 67789999999999999999999987777777755 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHH--
Q 047229 102 NFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIY-- 178 (599)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~-- 178 (599)
.++..++++++ ++.+.+.++.+++|+.+|...|++..++++||| ++||+..++.+.+-++|+.+.+++.
T Consensus 104 sai~nil~Gfs--------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l 175 (448)
T COG2271 104 SAIVNILFGFS--------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175 (448)
T ss_pred HHHHHHHHhhh--------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH
Confidence 99998877655 789999999999999999999999999999998 5699999999999999999999988
Q ss_pred HHhcCCChH-HHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHH
Q 047229 179 HAVNGDNTK-ALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIAT 257 (599)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (599)
+.+....+| .-+++-+++.++++++..+.+|..|++.-.
T Consensus 176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL---------------------------------------- 215 (448)
T COG2271 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL---------------------------------------- 215 (448)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC----------------------------------------
Confidence 555444333 334444555555555444444443332100
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHH
Q 047229 258 ALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDML 337 (599)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (599)
++.+++++ +|.+.. + +++++++....+.-.+-+++||..|
T Consensus 216 ------------------P~ie~~~~------------d~~e~~-~---------~~~~~~~ls~~~i~~~YVL~Nk~iW 255 (448)
T COG2271 216 ------------------PPIEEYRG------------DPLEIY-E---------EEKENEGLTAWQIFVKYVLKNKLIW 255 (448)
T ss_pred ------------------CCHHHhhc------------Cchhhh-h---------hhccCCCccHHHHHHHHHHcChHHH
Confidence 00000000 011000 0 0011111111222345678999999
Q ss_pred HHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSC 416 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 416 (599)
.+.++.++....-+++..|.|.|+.+ .|+|..++....+.+-.+++.|.+++||++||+-+. +|.....+..+...
T Consensus 256 ~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg---rR~p~~~i~~~~i~ 332 (448)
T COG2271 256 LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG---RRGPMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc---ccchHHHHHHHHHH
Confidence 99999999999999999999999877 599999999999999999999999999999999532 12233344444444
Q ss_pred HHHHHHHHhh-h--hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhh
Q 047229 417 IGYLLIAFAV-H--NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREAL 493 (599)
Q Consensus 417 ~~~~~~~~~~-~--~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~ 493 (599)
++++.+-..+ . ....+..+++|+...+..-+....+.|..|++..|++.|+......+++..++....|.+.|.
T Consensus 333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~--- 409 (448)
T COG2271 333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT--- 409 (448)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec---
Confidence 4444433332 2 334456677788777767777788999999999999999999888883344777777777777
Q ss_pred hcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 494 KQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
.+|...|++..+.++++.++.+.+.+.+++
T Consensus 410 ------------~gW~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 410 ------------WGWDGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 348889999888888888877766654443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=279.31 Aligned_cols=369 Identities=18% Similarity=0.253 Sum_probs=270.1
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHH
Q 047229 27 RWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFG 105 (599)
Q Consensus 27 ~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g 105 (599)
+|.+++..+...+..+..+.++++.|.+.+++|++.++.+++.+.+.++..+ +++.|++.||+|||+++.++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~ 81 (377)
T TIGR00890 2 WWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG 81 (377)
T ss_pred eEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence 4666666666666777788899999999999999999999987777787765 999999999999999999999999998
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCC
Q 047229 106 FFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDN 185 (599)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~ 185 (599)
.+.++++ ++++.+++.|+++|++.+..++.....+.+|+|++|+++.++...+.++|..+++++...+.+..
T Consensus 82 ~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (377)
T TIGR00890 82 FTFYAIA--------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLE 153 (377)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcc
Confidence 7766544 78999999999999999988888888899999999999999999999999988887777665433
Q ss_pred hHHHHHHH-HHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHH
Q 047229 186 TKALILLL-ACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVL 264 (599)
Q Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (599)
.|++.+.. ++...+..+...++++
T Consensus 154 ~~~~~f~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 178 (377)
T TIGR00890 154 GVPAAFIYMGIIFLLVIVLGAFLIG------------------------------------------------------- 178 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhee-------------------------------------------------------
Confidence 33332222 2211111111111110
Q ss_pred HhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHH
Q 047229 265 SLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATT 344 (599)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 344 (599)
+++++ ++++ +++ .+.++.+.++.++++.+|.+.+..+
T Consensus 179 -----------~~~~~----------------~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (377)
T TIGR00890 179 -----------YPPGQ----------------LIKT--------------NIE--VSVKDYTVWEMLRTPQFWVLYLSFF 215 (377)
T ss_pred -----------cCchh----------------cccc--------------Ccc--cchhhhhHHHHHcCccHHHHHHHHH
Confidence 00000 0000 000 0001123467888888888777666
Q ss_pred hhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH
Q 047229 345 CSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF 424 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (599)
+..........+.+++.++.|.++.+.+...+...++..+++++.|++.||++||+ .+..+.....++.+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~~~~~~~~~~~~~~~~~~ 289 (377)
T TIGR00890 216 LNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK------TMSIVFGISAVGMAAMLF 289 (377)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHH
Confidence 65555554555667777778888888888899999999999999999999998875 344555555555544433
Q ss_pred hhh--h-hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCcc
Q 047229 425 AVH--N-SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLN 501 (599)
Q Consensus 425 ~~~--~-~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~ 501 (599)
.+. . ......++.+++.+...+..+.+..|.+|+++++++.|+.+....+|.. ++|.+.|.+.|.
T Consensus 290 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~~~~g~l~~~----------- 357 (377)
T TIGR00890 290 IPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGI-FGGLIASHALTE----------- 357 (377)
T ss_pred cccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHH-HHHHHHHHHHhh-----------
Confidence 321 1 2233456678888887788888999999999999999999999999976 899999999887
Q ss_pred ccCcchHHHHHHHHHHHHHHHH
Q 047229 502 CIGARCYRVAFVTISAATFFAC 523 (599)
Q Consensus 502 ~~~~~~~~~~f~~~~~~~~i~~ 523 (599)
.+|+..|.+.+++.+++.
T Consensus 358 ----~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 358 ----IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred ----hchhhHHHHHHHHHHHhc
Confidence 358888888877666543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=274.00 Aligned_cols=400 Identities=14% Similarity=0.108 Sum_probs=258.4
Q ss_pred hhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHH
Q 047229 26 SRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNF 103 (599)
Q Consensus 26 ~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~ 103 (599)
.||..+...++..++... .+.++...|.+.+++|++.++.+++.+.+.++... +++.|++.||+|||+++.++.++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 344444444444333332 45678889999999999999999977777777654 8999999999999999999999998
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhc
Q 047229 104 FGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
++.++...+ ++++.+++.|++.|++.|..++....++.+++| ++|++++++...+.++|..+++++.+.+.
T Consensus 100 ~~~~~~~~~--------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 100 IINILFGFS--------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHHHHHHHH--------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765443 788999999999999999999999999999998 56999999999999999999988887766
Q ss_pred CCChHHHHHHHHHH-HHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 183 GDNTKALILLLACL-PTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 183 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
+...|++.+....+ ..+..++..+.++
T Consensus 172 ~~~gw~~~f~~~~i~~~~~~~~~~~~~~---------------------------------------------------- 199 (434)
T PRK11663 172 LHYGWRYGMMIAGIIAIVVGLFLCWRLR---------------------------------------------------- 199 (434)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHcC----------------------------------------------------
Confidence 54334433322221 1111111111111
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhH-HHhhcchhHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYAL-LQAIFSIDMLILF 340 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 340 (599)
+++++...+ + ..+++++..+.+ + +.+.++...+..+ ...++++.+|.+.
T Consensus 200 --------------~~p~~~~~~------~--~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (434)
T PRK11663 200 --------------DKPQAMGLP------S--VGEWRHDALELA-------Q-QQEGAGLSRKEILTKYVLLNPYIWLLS 249 (434)
T ss_pred --------------CCHhhcCCC------C--cccccccccccc-------h-hccccCCChhhhHHHHHhcChHHHHHH
Confidence 111100000 0 000000000000 0 0000000001111 2367788888887
Q ss_pred HHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 047229 341 TATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419 (599)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 419 (599)
+..++.......+..++|.++++ .|++..+++...+.+.+++.+|+++.|+++||+.++++.........+..+..+++
T Consensus 250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK11663 250 FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence 77666655555666788888854 69999999999999999999999999999999954321011111122222222222
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCC
Q 047229 420 LLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGG 499 (599)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~ 499 (599)
......+.....+..+.+|++.............|.+|++++|++.|+.++...+|.. ++|.+.|.+.|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~p~~~g~l~~~--------- 399 (434)
T PRK11663 330 WLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAA-LSGYPLAKVLEI--------- 399 (434)
T ss_pred HHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHH-HhcccHHHHHHh---------
Confidence 2221111122222233334433333334456778999999999999999999999976 899999999997
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 047229 500 LNCIGARCYRVAFVTISAATFFACIVSIILVL 531 (599)
Q Consensus 500 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 531 (599)
.+|...|++.+++.+++.+..+...+
T Consensus 400 ------~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 400 ------WHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34888999888887777665554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=279.21 Aligned_cols=401 Identities=15% Similarity=0.149 Sum_probs=267.6
Q ss_pred hhhHHHHHHHHHHHHh-hhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSV-NGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
.++|.++.++++.... .+..+.++.+.|++.+++|++.++.+++.+...+.. +.+++.|++.||+|||++++++.++.
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 5678877776665442 233566788999999999999999999666655554 55889999999999999999999888
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHH-HHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCL-YMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++.++++.+ ++++.+++ .|+++|++.+...+....++.+++|++|++++|+...+..+|..+++++.+.+
T Consensus 95 ~~~~~~~~~~--------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l 166 (455)
T TIGR00892 95 SLGMILASFS--------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYL 166 (455)
T ss_pred HHHHHHHHHh--------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8887665443 56777764 67999999998777777888899998899999999999999999998888776
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 182 NGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
.+...|++.++...+..++..+..++++
T Consensus 167 ~~~~gwr~~f~~~~~~~~~~~v~~~~~~---------------------------------------------------- 194 (455)
T TIGR00892 167 FESFGWRGSFLILGGLLLHCCVCGALMR---------------------------------------------------- 194 (455)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhC----------------------------------------------------
Confidence 6543333322222211111111111111
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFT 341 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (599)
+.+......+++ +..+.++.... + + .......++..+....+++++|+++...+
T Consensus 195 --------------~~~~~~~~~~~~---~~~~~~~~~~~-~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (455)
T TIGR00892 195 --------------PVGPSQRVSKSK---SKEGLPPDGST-K-K-------LSKKSTAEKINRFLDFSLFTHRGFLVYLS 248 (455)
T ss_pred --------------CCCccccccccc---ccccCCCCCcc-c-c-------ccccchhhhhhhhcchHHhcCchHHHHHH
Confidence 000000000000 00000000000 0 0 00000000001111135788999988877
Q ss_pred HHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLL 421 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 421 (599)
..++..........+++.+.++.|+++.+++...++.+++.++++++.|++.||...|. .+...+..+..+..++.++
T Consensus 249 ~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~~l~~ll 326 (455)
T TIGR00892 249 GNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP--HVQYLFSFALLFNGLTHLL 326 (455)
T ss_pred HHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--HHHHHHHHHHHHHHHHHHH
Confidence 76665555556667788888888999999999999999999999999999999742211 1122222333333333333
Q ss_pred HHH-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCc
Q 047229 422 IAF-AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGL 500 (599)
Q Consensus 422 ~~~-~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~ 500 (599)
... .+...+++..++.|++.+...+....++.|.+|++++++..|+.++...+|.. ++|.+.|.+.|..
T Consensus 327 ~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~-igp~i~G~l~~~~--------- 396 (455)
T TIGR00892 327 CALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVL-IGPPLAGRLVDAT--------- 396 (455)
T ss_pred HHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHH-ccccceeeeehhc---------
Confidence 322 23444566777889999998899999999999999999999999999999976 8999999999873
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHH
Q 047229 501 NCIGARCYRVAFVTISAATFFACIVSII 528 (599)
Q Consensus 501 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 528 (599)
++|+..|++.+++.+++.+...+
T Consensus 397 -----g~~~~~f~~~~~~~li~~~~~~~ 419 (455)
T TIGR00892 397 -----KNYKYIFYASGSIVVSAGLFLAI 419 (455)
T ss_pred -----CCcchHHHHhhHHHHHHHHHHHH
Confidence 35888888888777766654433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=269.75 Aligned_cols=358 Identities=12% Similarity=0.067 Sum_probs=255.9
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.+..++..|.+++|+|+|.++.+++.+.+.++..+ +++.|++.||+|||+++..+.+++.++.+.++++ ++
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--------~~ 96 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--------PQ 96 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--------cc
Confidence 46678999999999999999999977777777755 8999999999999999999999999998866544 78
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDN-TKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~ 201 (599)
++.+++.|+++|+|.+...+....++.+++|++|++++++...+..+|..+++.+...+.+.. .|+..+....++.++.
T Consensus 97 ~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 97 SALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988889999999988999999999888888888887766554321 1221111100000000
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
+ .......++
T Consensus 177 ~------------------------------------------------------------------~~~~~~~~~---- 186 (393)
T PRK09705 177 L------------------------------------------------------------------FAWWWQSAR---- 186 (393)
T ss_pred H------------------------------------------------------------------HHHHHHhcC----
Confidence 0 000000000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+ |+++ ++++. +.++.++++++|.+.+..++..........++|.++
T Consensus 187 ~--------------~~~~---------------~~~~~-----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l 232 (393)
T PRK09705 187 E--------------VASS---------------HKTTT-----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFY 232 (393)
T ss_pred C--------------Cccc---------------cCCCc-----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00000 113455677778777666665556666778889998
Q ss_pred HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 047229 362 KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCL 441 (599)
Q Consensus 362 ~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~ 441 (599)
++.|.+..+++...+++++++.+|+++.|++.||+++|+ ....+..+..++..++...+.....+...+.|++.
T Consensus 233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~ 306 (393)
T PRK09705 233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK------LLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGL 306 (393)
T ss_pred HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH------HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999998764 34444444444444332212111122344568888
Q ss_pred hhHHHHHHHHHHHhhC-CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHH
Q 047229 442 GAQLSLLVTIISELFG-LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATF 520 (599)
Q Consensus 442 g~~~~~~~~~~~e~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 520 (599)
+..++.......+.++ ++++|+.+|+.+....+++. ++|.+.|.+.|.. ++|...|++..++++
T Consensus 307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-~gp~~~G~l~~~~--------------g~~~~~~~~~~~~~~ 371 (393)
T PRK09705 307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG-LAPWFSGVLRSIS--------------GNYLMDWAFHALCVV 371 (393)
T ss_pred cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh--------------CCchHHHHHHHHHHH
Confidence 8887877777777775 56889999999988888876 8999999999983 458888888888777
Q ss_pred HHHHHHHHHHhhhc
Q 047229 521 FACIVSIILVLRTK 534 (599)
Q Consensus 521 i~~i~~~~~~~~~~ 534 (599)
+..+....+.++++
T Consensus 372 ~~~~~~~~~~~~~~ 385 (393)
T PRK09705 372 GLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHhccccc
Confidence 77666655554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-30 Score=264.91 Aligned_cols=380 Identities=12% Similarity=0.068 Sum_probs=264.3
Q ss_pred hhhhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHH
Q 047229 22 HLLDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGS 99 (599)
Q Consensus 22 ~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~ 99 (599)
++.+++|.+++.+++..+..+. .+..+...|.+.+++|.++++.+++.+...++..+ +++.|++.||+|||+++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3446889888887777776666 67788899999999999999999988888888765 889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHH
Q 047229 100 IMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIY 178 (599)
Q Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~ 178 (599)
++..++.+++.+. ++++.+++.|+++|++.+...+....++.|++| ++|++++++...+..+|..+++.+.
T Consensus 88 ~~~~~~~~~~~~~--------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 159 (406)
T PRK11551 88 ALFGLFSLATAQA--------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG 159 (406)
T ss_pred HHHHHHHHHHHHh--------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776655333 678999999999999999999989999999997 5799999999999999999988776
Q ss_pred HHhcCCChHHHHHHH-HHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHH
Q 047229 179 HAVNGDNTKALILLL-ACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIAT 257 (599)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (599)
..+.+...|++.++. ++.+.+..++...+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------------------------------------------ 191 (406)
T PRK11551 160 VLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLP------------------------------------------------ 191 (406)
T ss_pred HHHccccCHHHHHHHHHHHHHHHHHHHHHhCC------------------------------------------------
Confidence 655443333332222 1111111110000011
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhh---cch
Q 047229 258 ALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAI---FSI 334 (599)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~ 334 (599)
+.+++.. +++. +++ ++ ...+..+ +.+
T Consensus 192 ------------------~~~~~~~--------------~~~~---------------~~~-~~---~~~~~~~~~~~~~ 220 (406)
T PRK11551 192 ------------------ESRAFAQ--------------AAGA---------------GKQ-RA---PVLRALFGEGRAT 220 (406)
T ss_pred ------------------CChhHHh--------------ccCc---------------chh-hh---hhHHHHhhhhhhh
Confidence 1000000 0000 000 00 0001111 112
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 414 (599)
..+.+++..++.....+....+.|.+.++.|+++.+.+...+...++..+++++.|++.||+++|+ .+..+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~~~~~~~~ 294 (406)
T PRK11551 221 ATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR------VVLLIYAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHH
Confidence 233333333343344445566788888888999999999999999999999999999999998775 33334444
Q ss_pred HHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhh
Q 047229 415 SCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREAL 493 (599)
Q Consensus 415 ~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~ 493 (599)
..++.+.+... +.....+..++.|++.++..+....+..|.+|+++++++.|+.+....++.. ++|.+.|.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~~~g~l~~~~-- 371 (406)
T PRK11551 295 ILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSM-AGPLLAGQLLALG-- 371 (406)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHH-HHhhhHhhhhccC--
Confidence 44443333322 2334455566778888777888889999999999999999999999999976 8999999998862
Q ss_pred hcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 494 KQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
.++...++....+.+++.++.+.+
T Consensus 372 ------------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 372 ------------RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 346667776666666655555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-30 Score=268.67 Aligned_cols=408 Identities=13% Similarity=0.105 Sum_probs=254.3
Q ss_pred hhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHH
Q 047229 24 LDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIM 101 (599)
Q Consensus 24 ~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~ 101 (599)
++++|.++...++....... ...++...|.+.++ |++.++.+++.+...++.. .+++.|++.||+|||+++.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 34456654444443333322 34567788999888 9999999997777777765 499999999999999999999998
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHH-
Q 047229 102 NFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYH- 179 (599)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~- 179 (599)
..++.+.+++... ...+++.+++.|++.|++.+..++.....+.+++| ++|++++|+...+.++|+.+.+++..
T Consensus 103 ~~i~~~~~~~~~~----~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 178 (452)
T PRK11273 103 AAAVMLFMGFVPW----ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLL 178 (452)
T ss_pred HHHHHHHHHhhhc----ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8888766544311 11467788899999999999888888888899997 56999999999888888765555432
Q ss_pred HhcCCChHHHHH-HHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHH
Q 047229 180 AVNGDNTKALIL-LLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATA 258 (599)
Q Consensus 180 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (599)
.......|++.+ +.+.+.++..++..++++
T Consensus 179 ~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~------------------------------------------------- 209 (452)
T PRK11273 179 GMAWFNDWHAALYMPAFAAILVALFAFAMMR------------------------------------------------- 209 (452)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHcc-------------------------------------------------
Confidence 221111222221 111111111111111111
Q ss_pred HHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHH
Q 047229 259 LVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLI 338 (599)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (599)
+.+++...++++.. .++.+++. + + +++++.+..+.-...++|++.+|.
T Consensus 210 -----------------~~~~~~~~~~~~~~---~~~~~~~~--~---------~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (452)
T PRK11273 210 -----------------DTPQSCGLPPIEEY---KNDYPDDY--N---------E-KHEQELTAKQIFMQYVLPNKLLWY 257 (452)
T ss_pred -----------------CCHhhcCCCChhhh---hhcccccc--c---------c-ccCCCccHHHHHHHHHHcChHHHH
Confidence 11111000000000 00000000 0 0 000000001111234678999998
Q ss_pred HHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 047229 339 LFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCI 417 (599)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 417 (599)
..+..++.....+....++|.++++ .|++..+++....+..++..+++++.|+++||++++++ .........+..+
T Consensus 258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~---~~~~~~~~~l~~~ 334 (452)
T PRK11273 258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---GATGVFFMTLVTI 334 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---chHHHHHHHHHHH
Confidence 8888777666666777889999987 58998888888888899999999999999999954321 1111222222222
Q ss_pred HHHHHHH--h-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhh
Q 047229 418 GYLLIAF--A-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALK 494 (599)
Q Consensus 418 ~~~~~~~--~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~ 494 (599)
+...+.. . +.....+..+++|.+..........++.|.+|++.+|++.|+.+....+++.+.+|.+.|.+.|..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~--- 411 (452)
T PRK11273 335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF--- 411 (452)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh---
Confidence 2222211 1 112223334444544333333445667899999999999999988888876656899999999983
Q ss_pred cCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 495 QGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 495 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
+|+..|++++++++++++....+.+.++|
T Consensus 412 ------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 412 ------------GWDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 48999999888888887777766554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-30 Score=275.17 Aligned_cols=432 Identities=13% Similarity=0.065 Sum_probs=278.2
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
+.+|.++++..+..+..+. ....+...|.+.++++++..+.+++.+...++.++ ++++|+++||+|||++++++.++.
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 5577766666666655565 55678889999999999999999988878888866 889999999999999999999988
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
+++.++++++ +++++++++|+++|+|.|...+....++.+++| ++||+.++++..+..+|.++++.+...+
T Consensus 243 ~i~~ll~afa--------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 243 GFFAFFSSFV--------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred HHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887666443 679999999999999999999999999999998 5699999999999999998888776655
Q ss_pred cCC-------------ChHHHHHHHHHHHHHHHHHhhhccccccccCC-cchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 047229 182 NGD-------------NTKALILLLACLPTIVPIVFIPTIRIIKIARP-ENELKVFHSFLYILLVLAGFIMVTIIIQNKL 247 (599)
Q Consensus 182 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (599)
... ..|++++++..+|.++.++..+++++.|+... .+...... -+
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~---~i------------------ 373 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAW---MI------------------ 373 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHH---HH------------------
Confidence 431 23556666666676666666566654443100 00000000 00
Q ss_pred ccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh-hch--hhhhhhhhhccCCCCccccccccchhhh-cccCCCCCC--
Q 047229 248 RFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW-KGN--KLQALDAHYDQAIPALNVKTNFLTLFSL-KNVSKKPER-- 321 (599)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 321 (599)
+ ++..... +.+ .++.........+...++..+.+..... .++...+.+
T Consensus 374 ---------------L-----------~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (742)
T TIGR01299 374 ---------------L-----------KLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSE 427 (742)
T ss_pred ---------------H-----------HHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhh
Confidence 0 0000000 000 0000000000000000000000000000 000000000
Q ss_pred --CCChhHHHhhcc---hhHHHHHHHHHhhhcchhhhhcchHHHHHHc--------------------------------
Q 047229 322 --GDDYALLQAIFS---IDMLILFTATTCSIGGALAAIDNMGQIGKAL-------------------------------- 364 (599)
Q Consensus 322 --~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 364 (599)
.....++++++. ++++.+++..++..+..+++..|+|.+.+..
T Consensus 428 ~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (742)
T TIGR01299 428 GGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHR 507 (742)
T ss_pred hhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhcc
Confidence 001124445544 2446667777777778888888888764331
Q ss_pred ----------CCC---------------------C---------------------------------------------
Q 047229 365 ----------GYP---------------------T--------------------------------------------- 368 (599)
Q Consensus 365 ----------g~~---------------------~--------------------------------------------- 368 (599)
|+. .
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 587 (742)
T TIGR01299 508 GGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDF 587 (742)
T ss_pred ccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccC
Confidence 000 0
Q ss_pred -------cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Q 047229 369 -------HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFC 440 (599)
Q Consensus 369 -------~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~ 440 (599)
........+.+++.++|.++.|+++||+|||+ ++..+.++.+++.+++...+ ...+++..++.+++
T Consensus 588 ~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~------~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~ 661 (742)
T TIGR01299 588 DGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR------MLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGL 661 (742)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 00112245566889999999999999999885 55666666666655544433 33445555677888
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHH
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATF 520 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 520 (599)
.++.++...++++|.+|++.|++++|+.+....+|++ ++|++++.+.+. +...+|++.+++.+
T Consensus 662 ~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGai-igp~i~g~L~~~----------------~~~~pf~i~a~~ll 724 (742)
T TIGR01299 662 SIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAV-LGILIFGSFVGI----------------TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh----------------hhHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999976 899999988775 24567777777777
Q ss_pred HHHHHHHHHHhhhcc
Q 047229 521 FACIVSIILVLRTKN 535 (599)
Q Consensus 521 i~~i~~~~~~~~~~~ 535 (599)
+++++.+++ +++++
T Consensus 725 l~~ll~~~L-PET~~ 738 (742)
T TIGR01299 725 CGGLLALKL-PDTRG 738 (742)
T ss_pred HHHHHHHhC-CCCcc
Confidence 766666554 45443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=259.88 Aligned_cols=370 Identities=11% Similarity=0.034 Sum_probs=256.1
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
.++|..+....+..+.... .+....+.|.+.+++|.|+++.+++.+.+.++.. .+++.|++.||+|||+++.++.++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3456433333333333322 4444567899999999999999997777776664 5889999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++++.+.++ +|++.+++.|+++|++.+...+....++.+++| ++|++++|+...+.++|..+++++...+
T Consensus 85 ~~~~~~~~~~--------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l 156 (390)
T PRK03545 85 IASHVLSALA--------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI 156 (390)
T ss_pred HHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8887766444 789999999999999999888888999999997 6799999999999999999998888766
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 182 NGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
.+...|++.++......++..+
T Consensus 157 ~~~~gw~~~f~~~~~~~~l~~~---------------------------------------------------------- 178 (390)
T PRK03545 157 GQYLGWRTTFLAIGGGALITLL---------------------------------------------------------- 178 (390)
T ss_pred HHHhcHHHHHHHHHHHHHHHHH----------------------------------------------------------
Confidence 5432233222221111100000
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFT 341 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (599)
... ... |+.++ ++ +....+.++.+|++.++....
T Consensus 179 -~~~------~~~----------------------~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~ 212 (390)
T PRK03545 179 -LLI------KLL----------------------PLLPS--------------EH---SGSLKSLPLLFRRPALVSLYL 212 (390)
T ss_pred -HHH------HhC----------------------CCCCC--------------CC---cchHHHHHHHHhCcHHHHHHH
Confidence 000 000 00000 00 001123467888988876665
Q ss_pred HHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL 420 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 420 (599)
..++..........++++++++ .|+++.+++...+..++++.+++++.|++.||+++|. . ..+..+...+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~------~-~~~~~~~~~~~~ 285 (390)
T PRK03545 213 LTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF------L-LIAIALLLVCLL 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH------H-HHHHHHHHHHHH
Confidence 5555444444445566777666 5899999999999999999999999999999987652 2 233333333332
Q ss_pred HH-HH-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCC
Q 047229 421 LI-AF-AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKG 498 (599)
Q Consensus 421 ~~-~~-~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~ 498 (599)
++ .. .+....++..++.|++.+...+.....+.+..| +.++.+.|+.+....+|.. +||.+.|.+.|.
T Consensus 286 ~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~G~~~~G~~~~~-------- 355 (390)
T PRK03545 286 LLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIG-AGALLGNQVSLH-------- 355 (390)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc--------
Confidence 22 22 223345556677788877666667777888776 6889999998888888865 899999999998
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 499 GLNCIGARCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 499 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
.+++..|++.+++.+++.+......
T Consensus 356 -------~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 356 -------LGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred -------cChhHHHHHHHHHHHHHHHHHHHHc
Confidence 4588999988888887777665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=267.79 Aligned_cols=394 Identities=13% Similarity=0.056 Sum_probs=259.4
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
|.+|.++...++..++... ....+...|.+++|+|++.++.+++.+.+.++..+ +++.|++.||+|||+++.++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 3466666655555555444 66678888999999999999999987777777655 899999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++.++.+++ +|++++++.|+++|++.+...+....++.+|+| ++|+++++++..+.++|..+++.+...+
T Consensus 84 ~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 155 (412)
T TIGR02332 84 GIASTATMFA--------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI 155 (412)
T ss_pred HHHHHHHHHh--------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987766544 778999999999999999998888889999998 4699999999999999999998888776
Q ss_pred cC------CChHHHHHHHHHHHH-HHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhh
Q 047229 182 NG------DNTKALILLLACLPT-IVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEY 254 (599)
Q Consensus 182 ~~------~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (599)
.. ...|++.++...++. +..++..+++++.|++.+....
T Consensus 156 ~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~---------------------------------- 201 (412)
T TIGR02332 156 LALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE---------------------------------- 201 (412)
T ss_pred HhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----------------------------------
Confidence 53 124555444433333 3333333444443332110000
Q ss_pred hHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcch
Q 047229 255 IATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSI 334 (599)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (599)
++++...+..+.+..+. +++++ ..++++......++++ +++
T Consensus 202 -----------------------------~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~-~~~ 242 (412)
T TIGR02332 202 -----------------------------EDKKALKEMIDNDQLTL-EQPEG--------AFAHAAMPQRSMLREI-FTP 242 (412)
T ss_pred -----------------------------HHHHHHHHHHHhccccc-ccccc--------ccccccccHHHHHHHh-cCh
Confidence 00000000000000000 00000 0000000011123333 467
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHHc--CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKAL--GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
.+|...+.+++.......+..++|.++++. |+++.+++.......++..+|+++.|+++||+++|+ .......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~-----~~~~~~~ 317 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK-----HHTALPY 317 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH-----HHHHHHH
Confidence 888888888877777777888999999875 677788888899999999999999999999998653 1122222
Q ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 413 LFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 413 ~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
.+..+++++..... ....+....+.+++.....+.......|.+|+++++++.|+.+....+|+. ++|.+.|.+.|..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~-~~p~~~g~i~~~~ 396 (412)
T TIGR02332 318 LFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSA-LSPFLIGILKDAT 396 (412)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhh-hhhhhcccccccC
Confidence 33333332222221 111122222223333333333445556789999999999999999999976 8999999999872
Q ss_pred hhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 492 ALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
++|+.+|++.+++.
T Consensus 397 --------------g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 397 --------------GSFNSGLWFVAALL 410 (412)
T ss_pred --------------CCCchhHHHHHHHH
Confidence 45888888766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-29 Score=245.41 Aligned_cols=376 Identities=14% Similarity=0.139 Sum_probs=280.2
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
++.|..+....+..++.+. .+....+.|++.+|+|+|..+.+++.+.+.++. +.+|+...+.||+.||++++...+++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3444444444555556666 788888999999999999999999766666666 45999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++.++++++ +||+.+++.|++.|+..|..++....+..+..| +||+++++++..+..++..++.|++..+
T Consensus 89 i~~n~l~alA--------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i 160 (394)
T COG2814 89 IVSNLLSALA--------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL 160 (394)
T ss_pred HHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999988776 899999999999999999999999999999996 6899999999999999999999999887
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 182 NGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
-+...|+ ..|.....+. +..+.
T Consensus 161 g~~~GWR--------------------------------~~F~~ia~l~----ll~~~---------------------- 182 (394)
T COG2814 161 GQLFGWR--------------------------------ATFLAIAVLA----LLALL---------------------- 182 (394)
T ss_pred HHHhhHH--------------------------------HHHHHHHHHH----HHHHH----------------------
Confidence 6643333 3333111110 00000
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFT 341 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (599)
.+...+| + . +..+.++....+..+.+|+|..|...+
T Consensus 183 -~~~~~lP--------~-------------------~----------------~~~~~~~~~~~~~~~~l~~p~v~~~l~ 218 (394)
T COG2814 183 -LLWKLLP--------P-------------------S----------------EISGSLPGPLRTLLRLLRRPGVLLGLL 218 (394)
T ss_pred -HHHHhCC--------C-------------------c----------------cCCCCCCcchhHHHHHhcCchHHHHHH
Confidence 1111111 0 0 000111112223578999999999999
Q ss_pred HHHhhhcchhhhhcchHHHHHHc-CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIGKAL-GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL 420 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 420 (599)
..++..+..+..+.|+.+++++. |++....++....++++..+|+.++|++.|| +.|+ .+.....++++.++
T Consensus 219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~------~l~~~~~l~a~~~l 291 (394)
T COG2814 219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR------ALIAALLLLALALL 291 (394)
T ss_pred HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh------HHHHHHHHHHHHHH
Confidence 99999999999999999999885 9999999999999999999999999999999 5543 44555455555554
Q ss_pred HHHHhh--hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCC
Q 047229 421 LIAFAV--HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKG 498 (599)
Q Consensus 421 ~~~~~~--~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~ 498 (599)
.+.... .....+..++.|+..+..........++ ..+++...+.++.....++|.. .|..++|.++|+
T Consensus 292 ~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia-~GA~lGG~v~~~-------- 361 (394)
T COG2814 292 ALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIA-LGAALGGLVLDA-------- 361 (394)
T ss_pred HHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHh--------
Confidence 444332 2233344444566665555555555555 3358899999999999999965 899999999999
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 499 GLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 499 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+|....++.+++.+++.++.+...++.+
T Consensus 362 -------~g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 362 -------LGYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred -------hchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45888899998888888877766554433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=270.61 Aligned_cols=425 Identities=20% Similarity=0.257 Sum_probs=305.4
Q ss_pred hhhhhHHHHHHHHHHHHh-hhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHH
Q 047229 23 LLDSRWFMFFATLLIMSV-NGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSI 100 (599)
Q Consensus 23 ~~~~~w~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~ 100 (599)
.--+.|.+.+++++.+.. .|..+.++++.+.++++++.+.++.+|+.+...... +.+|+.+.+.||||.|++.++|.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 335789998888887654 477999999999999999999999999766655555 559999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHH-HHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHH
Q 047229 101 MNFFGFFMIWLSVSHRFGAKPHVWQMCL-YMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYH 179 (599)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~ 179 (599)
+..+|.++..++ ++++++++ +.++.|+|.|+.+.++..++..||++||+.+.|+..++.++|..+.+++..
T Consensus 120 v~~~g~~lssF~--------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~ 191 (509)
T KOG2504|consen 120 VAALGLLLSSFA--------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLK 191 (509)
T ss_pred HHHHHHHHHHHH--------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHH
Confidence 999997766444 77888776 889999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHH
Q 047229 180 AVNGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATAL 259 (599)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (599)
.+++...|++..+......+..+++....|+...+..........
T Consensus 192 ~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~----------------------------------- 236 (509)
T KOG2504|consen 192 YLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLR----------------------------------- 236 (509)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhc-----------------------------------
Confidence 988764444332222222232222222333211110000000000
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhc-cCCCCcccccc--ccchhhhcc-cCCCCCCCCChhH----HHhh
Q 047229 260 VVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYD-QAIPALNVKTN--FLTLFSLKN-VSKKPERGDDYAL----LQAI 331 (599)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~----~~~l 331 (599)
. ..+..+....... ..+++.....+ .+.....++ .++......+... .+++
T Consensus 237 --------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll 295 (509)
T KOG2504|consen 237 --------------------N-SAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLL 295 (509)
T ss_pred --------------------c-ccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHH
Confidence 0 0000000000000 00000000000 000000000 0111100111112 5889
Q ss_pred cchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHH
Q 047229 332 FSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLV 411 (599)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~ 411 (599)
+++.|+.+.+...+..........+++.+.++.|++..+++.++++.++.+++||++.|+++|+... ++.++..++
T Consensus 296 ~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~----~~~~~~~~~ 371 (509)
T KOG2504|consen 296 KDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI----RALVLFLLT 371 (509)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc----chHHHHHHH
Confidence 9999999999888888888888888999999999999999999999999999999999999999863 233455666
Q ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 412 ILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 412 ~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
.++..++.+.....+ ...+....+++|++.|......+.++.|+.+.++.+.++|+..+...++.. +||++.|.++|.
T Consensus 372 ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l-~gpPiag~~~d~ 450 (509)
T KOG2504|consen 372 LLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL-VGPPIAGLLYDI 450 (509)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH-cCcccceeeeec
Confidence 666666655555444 345777888999999999999999999999999999999999999999975 899999999998
Q ss_pred hhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 491 EALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
+ ++|...|++.+++.+++..+.++..
T Consensus 451 t--------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 451 T--------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred c--------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 3 5699999999999888887776665
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-29 Score=265.98 Aligned_cols=387 Identities=12% Similarity=0.041 Sum_probs=234.4
Q ss_pred HHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHH-HHH-----HHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHH
Q 047229 30 MFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTT-LNL-----VSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIM 101 (599)
Q Consensus 30 ~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~-~~~-----~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~ 101 (599)
.+..+.+..+..+. ...++...|.+.++++.+.++ .++ +.+...++..+ +++.|+++||+|||+++.++.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33334444444444 566778889999998644322 122 13444555544 88999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCChhHHH--------HHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHH
Q 047229 102 NFFGFFMIWLSVSHRFGAKPHVWQ--------MCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGA 172 (599)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~ 172 (599)
++++.++++++ +|+.+ ++++|+++|+|.|..++....++.||+| ++||++.++...+..+|..
T Consensus 97 ~~i~~~~~a~~--------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~ 168 (490)
T PRK10642 97 MSISTFCIGLI--------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV 168 (490)
T ss_pred HHHHHHHHHhc--------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 99998876554 66653 7889999999999999999999999997 6799999999887777777
Q ss_pred HHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 047229 173 IMTQIYHAVN--------GDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQ 244 (599)
Q Consensus 173 i~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (599)
+++.+...+. ....|++.++.+.++.++.++....++
T Consensus 169 lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~----------------------------------- 213 (490)
T PRK10642 169 LGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALE----------------------------------- 213 (490)
T ss_pred HHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCC-----------------------------------
Confidence 7665543221 122344433333222221111000000
Q ss_pred cccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCC
Q 047229 245 NKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDD 324 (599)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (599)
+.++ +..++ +.. ++ .+. + ...+ ..+
T Consensus 214 -------------------------------esp~-~~~~~-~~~----~~-~~~---~-----------~~~~---~~~ 238 (490)
T PRK10642 214 -------------------------------ETPA-FQQHV-DKL----EQ-GDR---E-----------GLQD---GPK 238 (490)
T ss_pred -------------------------------CChh-HHHHH-Hhh----hh-hcc---c-----------cccc---ccc
Confidence 0000 00000 000 00 000 0 0000 011
Q ss_pred hhHHHhhcc-hhHHHHH-HHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 047229 325 YALLQAIFS-IDMLILF-TATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYK 401 (599)
Q Consensus 325 ~~~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~ 401 (599)
.++++++++ ++.+... ...++.....+.+..++|.++++ .|++..+.........++..++.++.|+++||+|||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~- 317 (490)
T PRK10642 239 VSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP- 317 (490)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-
Confidence 224455543 2222222 22233334455566788888865 6888877777777788889999999999999999875
Q ss_pred CCchHHHHHHHHH-HHHHHHHH--HHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhh
Q 047229 402 VPRPLLLTLVILF-SCIGYLLI--AFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSY 477 (599)
Q Consensus 402 ~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~ 477 (599)
.+..+.++ .+.+..++ ...+ ...+++..++.+++.+...+....+.+|.+|++.||++.|+.+....+++.
T Consensus 318 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~ 392 (490)
T PRK10642 318 -----FVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAG 392 (490)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHH
Confidence 33333322 22222211 1111 223445556667777777777888899999999999999975544555554
Q ss_pred HhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047229 478 IFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNF 536 (599)
Q Consensus 478 i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~ 536 (599)
++|.+.+.+.+.. .++...+++..++++++.+..+++ ++++++
T Consensus 393 -~~p~i~g~l~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~-pes~~~ 435 (490)
T PRK10642 393 -LTPTLAAWLVEST--------------QNLMMPAYYLMVVAVIGLITGVTM-KETANR 435 (490)
T ss_pred -HHHHHHHHHHHHh--------------CCchHHHHHHHHHHHHHHHHHHHh-ccccCC
Confidence 7888999888763 234555555555666666655544 555543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=255.35 Aligned_cols=352 Identities=12% Similarity=0.034 Sum_probs=239.1
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
...++...|.+++|+|+|.++.+++.+.+.+++.. +++.|++.||+|||++++.+......+.... . ..++
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~--~------~~~~ 78 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL--L------DPFN 78 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH--H------Hhcc
Confidence 55678899999999999999999987777777755 8999999999999988766554444432211 1 1157
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHH-HHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLL-ACLPTIV 200 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~ 200 (599)
+++++++|+++|+|.+. .+.....+.+|+| ++|++++++...+.++|..+++++...+.+...|++.++. +.++.+.
T Consensus 79 ~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 79 YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 89999999999999996 4556666789997 6799999999999999999998888777654444443333 3333222
Q ss_pred HHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 047229 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNI 280 (599)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (599)
.++..+.+++.|+
T Consensus 158 ~~~~~~~lp~~p~------------------------------------------------------------------- 170 (368)
T TIGR00903 158 IILVLAALPALPF------------------------------------------------------------------- 170 (368)
T ss_pred HHHHHHHcCCCCC-------------------------------------------------------------------
Confidence 2211111110000
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
+.. + ..+. ++....+++++++|.+|.+.+..++.....+.+.+|+|.+
T Consensus 171 ------------------~~~---~----------~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~ 218 (368)
T TIGR00903 171 ------------------QAA---E----------GFGF-KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAA 218 (368)
T ss_pred ------------------CCC---C----------Ccch-HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000 0001236789999999999999999888888899999999
Q ss_pred HHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Q 047229 361 GKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIGF 439 (599)
Q Consensus 361 ~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~ 439 (599)
+++.|++.. .+....+..+.+.++ .++++||+.||. .|........++.++....+... +.....+...+.++
T Consensus 219 L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~--~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 292 (368)
T TIGR00903 219 LRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAG--LRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGL 292 (368)
T ss_pred HHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 988888754 555555555544444 588999987653 22222322333333333333322 22233444555677
Q ss_pred HhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 440 CLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 440 ~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
+....++..+++.+|.+|++.||++.|+.+..+.+++. .+|.+.+.+... ....|.+.++..
T Consensus 293 ~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~-~~~~~~~~~~~~-----------------~~~~f~~~~~~~ 354 (368)
T TIGR00903 293 LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISV-ALALAAMLFISS-----------------AEAYFTFLAILI 354 (368)
T ss_pred hhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHH-HHHHHHHHHhcC-----------------HHHHHHHHHHHH
Confidence 77777788889999999999999999999999999976 778777766632 566677777777
Q ss_pred HHHHHHHH
Q 047229 520 FFACIVSI 527 (599)
Q Consensus 520 ~i~~i~~~ 527 (599)
+++.+...
T Consensus 355 ~i~~~~~~ 362 (368)
T TIGR00903 355 TIAFAIAL 362 (368)
T ss_pred HHHHHHHH
Confidence 77666653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=253.30 Aligned_cols=391 Identities=12% Similarity=0.107 Sum_probs=247.8
Q ss_pred HHHHHHHHHH-HhhhhHHHHHhhHHHHHh-HhCCCHHHHHHHHHHHH-hHhhhhhhhhhhhcccCChHHHHHHHHHHHHH
Q 047229 29 FMFFATLLIM-SVNGSSYMFALYSNDIKS-SLGYDQTTLNLVSFFKD-LGGNLGVLAGLTYEVAPPWIVLLSGSIMNFFG 105 (599)
Q Consensus 29 ~~~~~~~~~~-~~~g~~~~~~~~~~~l~~-~~~~s~~~~~~~~~~~~-~~~~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g 105 (599)
..+..+++.. .+....+.++++.+.+.+ ++|+|.+|.+++.+... .+.+..++.|++.||+|+|+++.++.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3444444443 334457888998888876 89999999999655444 55566899999999999999999999999888
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCC
Q 047229 106 FFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGD 184 (599)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~ 184 (599)
++..+++..... ++++++++.|++.|++ +..++.....+++|||+ +||+++|+.....++|..+...+...+..
T Consensus 114 ~~~~~~a~~~~~---~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~- 188 (462)
T PRK15034 114 CVWLGIAVQNPN---TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF- 188 (462)
T ss_pred HHHHHHHHcccC---CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Confidence 776654433323 6899999999999998 66888999999999985 59999999976666776665444322110
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhccccccc--cCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHH
Q 047229 185 NTKALILLLACLPTIVPIVFIPTIRIIKI--ARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVV 262 (599)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (599)
..++..+-....+. ....+++.....+..+.+ +..
T Consensus 189 ---------------~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i-------v~~--------------------- 225 (462)
T PRK15034 189 ---------------VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA-------IAT--------------------- 225 (462)
T ss_pred ---------------HHHHHHhccccccccccchHHHHHHHHHHHHHHH-------HHH---------------------
Confidence 00000000000000 000111111111111100 000
Q ss_pred HHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHH
Q 047229 263 VLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTA 342 (599)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 342 (599)
.+.+...++ .++.+......++.+|+|+.|++.+.
T Consensus 226 ------i~~~~~~~~---------------------------------------~~~~~~~~~~~~~vlk~~~~Wllsll 260 (462)
T PRK15034 226 ------IAAWSGMND---------------------------------------IASSRASIADQLPVLQRLHLWLLSLL 260 (462)
T ss_pred ------HHHHHhCCC---------------------------------------ccccccCHHHHHHHhCCCchhHHHHH
Confidence 000000000 00001112345779999999999999
Q ss_pred HHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-
Q 047229 343 TTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLL- 421 (599)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~- 421 (599)
+++..+.+..+.+++|++.++ .++.........+..+...+.++++|+++||+|+++ ++.++.+.+.++...
T Consensus 261 y~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~------vl~~~~i~~~i~~~~~ 333 (462)
T PRK15034 261 YLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR------VTLINFIFMAIFSALL 333 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH------HHHHHHHHHHHHHHHH
Confidence 999988888888889988876 344333333344556889999999999999998775 444444433333221
Q ss_pred -HHHhh-----hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCC---------------------Ccccchhhhhhccchh
Q 047229 422 -IAFAV-----HNSLYFASIIIGFCLGAQLSLLVTIISELFGL---------------------KHYSTLYNVGSVSSPI 474 (599)
Q Consensus 422 -~~~~~-----~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~---------------------~~~g~~~g~~~~~~~i 474 (599)
...+. .....+..+.+.++.|......+-++++.+|. ++.|.+.|+....+.+
T Consensus 334 ~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~ 413 (462)
T PRK15034 334 FLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV 413 (462)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc
Confidence 11111 11222223333344444444555555566653 2677889999999999
Q ss_pred hhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 475 GSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 475 g~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
|+. +-|.+.|..++. ++++...|+++.+..++|.++.++.+.|+.
T Consensus 414 Ggf-~~p~~~g~~~~~--------------~g~~~~~~~~~~~~~~~~~~~~w~~y~r~~ 458 (462)
T PRK15034 414 GGF-FIPQAFGMSLNM--------------TGSPVGAMKVFLIFYIVCVLLTWLVYGRRK 458 (462)
T ss_pred ccc-hhhHHHHHHHHH--------------cCCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 887 668888988887 357999999999999999998888765543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=262.23 Aligned_cols=377 Identities=11% Similarity=0.073 Sum_probs=236.9
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.+.++.+.|.+.+++|++.++.+++.+.+.++..+ +++.|++.||+|||+++..+.++..++.++.+++ ++
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--------~s 123 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--------SS 123 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--------cC
Confidence 56778889999999999999999987777777765 7899999999999999999988888876655433 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.+++.|+++|++.+.. .....++.+++| ++||+++|+......+|+.+++.+...+..
T Consensus 124 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~------------------ 184 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFP------------------ 184 (476)
T ss_pred HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 888889999999998864 345567899997 569999999887666776666544322110
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
.+ ... ......+|+..|...+.+ .++.. ++. ....++.++
T Consensus 185 ~~----~~~-~~~~~~gWr~~f~i~g~l-------~l~~~---------------------l~~-----~~~~~~~p~-- 224 (476)
T PLN00028 185 LI----KDA-GAPSFTAWRIAFFVPGLL-------HIIMG---------------------ILV-----LTLGQDLPD-- 224 (476)
T ss_pred HH----Hhc-CCcchhhhHHHHHHHHHH-------HHHHH---------------------HHH-----HHHcCcCCC--
Confidence 00 000 000011233333311111 00000 000 000000000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+...+.+ + +.+.++......+++.++++++|.+.+.+++.......+.+++|.++
T Consensus 225 -----------------~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 279 (476)
T PLN00028 225 -----------------GNYRELK-------K-SGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYF 279 (476)
T ss_pred -----------------CchhhHH-------h-cCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 0000000 0 00000011112356778889999888777666555556667788887
Q ss_pred HH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccC-CchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH
Q 047229 362 KA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKV-PRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIG 438 (599)
Q Consensus 362 ~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g 438 (599)
.+ .|++..+++...++.++++.++++++|+++||++||+.. .|.....+..++..+..+++...+ .....+.+++.+
T Consensus 280 ~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~ 359 (476)
T PLN00028 280 YDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFS 359 (476)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 65 599999999999999999999999999999999987532 233343344333333333332222 222334455556
Q ss_pred HHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHH
Q 047229 439 FCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAA 518 (599)
Q Consensus 439 ~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 518 (599)
++.+...+....+..+.. ++++|+++|+.+..+.+|+. ++|. +++... +.+|+..|++.+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~-i~~~----l~~~~~------------~~~y~~~f~~~~~~ 421 (476)
T PLN00028 360 IFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAV-LTQL----LFFTGS------------SYSTETGISLMGVM 421 (476)
T ss_pred HHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHH-HHHH----HHHhcC------------CccHhhHHHHHHHH
Confidence 666555555556666654 47999999999877777765 4443 444211 24699999999888
Q ss_pred HHHHHHHHHHHH
Q 047229 519 TFFACIVSIILV 530 (599)
Q Consensus 519 ~~i~~i~~~~~~ 530 (599)
.+++.++.++.+
T Consensus 422 ~~i~~~~~~~~~ 433 (476)
T PLN00028 422 IIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHhee
Confidence 888877766654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=258.47 Aligned_cols=401 Identities=11% Similarity=0.069 Sum_probs=273.0
Q ss_pred hhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHH
Q 047229 26 SRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNF 103 (599)
Q Consensus 26 ~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~ 103 (599)
|+|.+++..++..+.... ....++..|++.+++|.+.++.+|+.+.+.++... .++.|+++||+|||++++++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 355555555555555544 66778889999999999999999987777777654 8999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcC-C-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 104 FGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNF-P-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~f-p-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
+++++++++ +|++.++++|+++|+|.+...+.....+.+++ | ++|++++|+.....++|..+++.+++.+
T Consensus 83 ~~~~~~~~a--------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l 154 (495)
T PRK14995 83 LASLAAAFS--------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL 154 (495)
T ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998776544 78999999999999999998888888887877 5 5699999999999999999999999988
Q ss_pred cCCChHHHHHHHHHHHHHHHH-HhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHH
Q 047229 182 NGDNTKALILLLACLPTIVPI-VFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALV 260 (599)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (599)
.+...|++.++......++.+ +....+++.++++ ..+++..+......+...+...+........ .........
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~----~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 229 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR----DQPLNLGHALMLIVAILLLVYSAKTALKGFL-SLWVTSLTL 229 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC----CCCCChHhHHHHHHHHHHHHHHHHhccccCC-chHHHHHHH
Confidence 887667766555443333332 2233444332211 1112222222222222222222211111110 000010000
Q ss_pred HHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHH
Q 047229 261 VVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILF 340 (599)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (599)
. . .. ..+..+...+. ..+. +....+++|++.++...
T Consensus 230 ~-~-~~-~~l~~f~~~e~------------------------------------~~~~-----p~~~~~lf~~~~~~~~~ 265 (495)
T PRK14995 230 L-T-GA-LLLGLFIRTQL------------------------------------AASR-----PMIDMRLFTHRIILSGV 265 (495)
T ss_pred H-H-HH-HHHHHHHHHHh------------------------------------cCCC-----CCcCHHHhCCcccHHHH
Confidence 0 0 00 00011111100 0000 01115688898888777
Q ss_pred HHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 047229 341 TATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419 (599)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 419 (599)
+..++..........++|.+++. .|+++.+++....+..++..++.++.|++.||+++|+ .+..+.++.+++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~------~~~~g~~~~~~~~ 339 (495)
T PRK14995 266 VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL------VATGGMALSALSF 339 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHHH
Confidence 76666655555666677888877 5999999999999999999999999999999998764 4555555555555
Q ss_pred HHHHHh----hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 420 LLIAFA----VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 420 ~~~~~~----~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
.++... +....+...++.|++.|...+.....+.+..|+++++.+.++.++...+|+. +|+.+.|.+++.
T Consensus 340 ~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~-~G~ai~g~i~~~ 413 (495)
T PRK14995 340 YGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG-LGIAIFGLLLSR 413 (495)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 443321 2223455677889999998888888888999999999999999999999976 888888888764
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=253.42 Aligned_cols=384 Identities=11% Similarity=-0.039 Sum_probs=230.6
Q ss_pred hhhhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhC---CCHHHHHHH---HHHHHhHhhh-hhhhhhhhcccCChH
Q 047229 22 HLLDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLG---YDQTTLNLV---SFFKDLGGNL-GVLAGLTYEVAPPWI 93 (599)
Q Consensus 22 ~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~---~s~~~~~~~---~~~~~~~~~~-~~~~G~l~Dr~G~r~ 93 (599)
++.+++|..+..+++..+.... .+.++...|.+.++++ .+..+.++. .....++..+ ++++|+++||+|||+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~ 94 (432)
T PRK10406 15 SDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKK 94 (432)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 3445666555555555444444 6668889999999984 556654443 2233333334 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHH
Q 047229 94 VLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGA 172 (599)
Q Consensus 94 ~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~ 172 (599)
++.++.+++.++++.++++.....+...++..++++|+++|+|.|..++....++.|++| ++||++.++...+...|..
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~ 174 (432)
T PRK10406 95 SMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQL 174 (432)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Confidence 999999999999876654411000000123468899999999999999999999999997 6799999988777766666
Q ss_pred HHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 047229 173 IMTQIYHAVN--------GDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQ 244 (599)
Q Consensus 173 i~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (599)
+++.+...+. ....|++.++++.++.++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~------------------------------------------ 212 (432)
T PRK10406 175 LALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL------------------------------------------ 212 (432)
T ss_pred HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH------------------------------------------
Confidence 5544432211 01122222222221111100
Q ss_pred cccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCC
Q 047229 245 NKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDD 324 (599)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (599)
..+...++. ++. +. ++++ +.
T Consensus 213 ----------------------------~~~~~~~e~---------------~~~---~~----------~~~~----~~ 232 (432)
T PRK10406 213 ----------------------------WLRRQLDET---------------SQQ---ET----------RALK----EA 232 (432)
T ss_pred ----------------------------HHHhcCCCC---------------chH---HH----------hhhc----cc
Confidence 001000000 000 00 0000 01
Q ss_pred hhHHHhhcchhHHHHHHHHHhh-hcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 047229 325 YALLQAIFSIDMLILFTATTCS-IGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKV 402 (599)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~ 402 (599)
.+++++++++++|...+..++. ....+.+..++|.++++ .|++..+.+...++..+...++.++.|+++||++||+
T Consensus 233 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-- 310 (432)
T PRK10406 233 GSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-- 310 (432)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH--
Confidence 2357788888888766554432 44455567788888865 6898888888888888888899999999999998875
Q ss_pred CchHHHHHHHHHHHHHHH-HHH-Hh--hhhhH-HHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchh-hh
Q 047229 403 PRPLLLTLVILFSCIGYL-LIA-FA--VHNSL-YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPI-GS 476 (599)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~-~~~-~~--~~~~~-~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~i-g~ 476 (599)
.+....++.++... ... .. +.... .....+..++.+...+....+.+|.+|+++|+++.|+.+..+.+ .+
T Consensus 311 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g 386 (432)
T PRK10406 311 ----SMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFG 386 (432)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHH
Confidence 22222222221111 111 11 11111 12222223344444556678899999999999999999865554 23
Q ss_pred hHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 477 YIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 477 ~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
. ..|.+.+. .+.. +.|...++..+++.+++.+..+++
T Consensus 387 ~-~~p~~~~~-l~~~--------------g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 387 G-SAEYVALS-LKSI--------------GMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred h-HHHHHHHH-HHHh--------------CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3 46666664 4542 235566666666666666655544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=249.85 Aligned_cols=376 Identities=14% Similarity=0.136 Sum_probs=260.1
Q ss_pred hhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHH
Q 047229 26 SRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNF 103 (599)
Q Consensus 26 ~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~ 103 (599)
+||.....+++..+..+. .+.++...|++.+++|+|.++.+++.+...++..+ +++.|++.||+|||+++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445554455555555544 67789999999999999999999987777777765 8899999999999999999998888
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhc
Q 047229 104 FGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
++.++..+. ++++.+++.|+++|++.|...+.....+.+++|+ +|+++++......++|+.+++.+...+.
T Consensus 84 i~~~l~~~~--------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 84 LAVAGLMFS--------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHHc--------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887655432 6788999999999999998888888899999984 6999999988888888888888776654
Q ss_pred CC-ChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 183 GD-NTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
.. ..|++.+.......++..+.
T Consensus 156 ~~~~gw~~~f~~~~~~~~~~~~~--------------------------------------------------------- 178 (394)
T PRK03699 156 ARSIEWYWVYACIGLVYVAIFIL--------------------------------------------------------- 178 (394)
T ss_pred hccccHHHHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 32 22332222111111000000
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFT 341 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (599)
... ++.++ .+++.++ ++++.. + ...++.++...+
T Consensus 179 ---------~~~-~~~p~-------------------~~~~~~~---------~~~~~~-------~-~~~~~~~~~~~~ 212 (394)
T PRK03699 179 ---------TLF-SEFPA-------------------LGKHAPK---------ADKPVA-------K-EKWGIGVLFLAI 212 (394)
T ss_pred ---------HHh-cCCcc-------------------ccccCcc---------ccCccc-------c-ccCChHHHHHHH
Confidence 000 00000 0000000 000000 0 012355666666
Q ss_pred HHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL 420 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 420 (599)
..++.......+..++|.++++ .|+|+.+++...+.+.++..+|+++.|+++||+++|+ .+.....+..+...
T Consensus 213 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~------~l~~~~~~~~~~~~ 286 (394)
T PRK03699 213 AALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR------ILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh------HHHHHHHHHHHHHH
Confidence 6666655566677889999865 6999999999999999999999999999999998774 23333333333333
Q ss_pred HHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCC
Q 047229 421 LIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGG 499 (599)
Q Consensus 421 ~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~ 499 (599)
++... +.....+..++.|++.+..++...++..+..+ ++++...|.......+|.. ++|.+.|.+.|..
T Consensus 287 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-i~p~~~G~l~~~~-------- 356 (394)
T PRK03699 287 LFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTM-LTFVVTSPIVAHF-------- 356 (394)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHHh--------
Confidence 33322 23344455667788888888888888888775 5567778888888888876 8999999999973
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 500 LNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 500 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
+++..+++..++.+++.++.+.+.+-.|+
T Consensus 357 -------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (394)
T PRK03699 357 -------GLQAALLTANGLYAVVFVMCILLGFVSKH 385 (394)
T ss_pred -------CchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888777766666655554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=255.48 Aligned_cols=360 Identities=14% Similarity=0.100 Sum_probs=242.3
Q ss_pred hhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHH
Q 047229 26 SRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNF 103 (599)
Q Consensus 26 ~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~ 103 (599)
.+|..++.+.+..+..+. .+..+...|.+++++|+++.+.+++.+...++..+ +++.|++.||+|||+++.++.++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 444444455555555555 55567788999999999999999988878888766 8899999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhc
Q 047229 104 FGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
++.+...++ ++++.++++|+++|+|.+..++....++.+++| ++|+++.++...+.++|.++++.+...+.
T Consensus 95 ~~~~~~~~~--------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 95 VGTGLSGLA--------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred HHHHHHHHH--------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 987766544 679999999999999999999999999999998 56999999999999999999888877665
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHH
Q 047229 183 GDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVV 262 (599)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (599)
+...|++.++....+.++.+ +++
T Consensus 167 ~~~~w~~~f~i~~~~~~~~~----~~~----------------------------------------------------- 189 (426)
T PRK12307 167 EAYGWRAAFFVGLLPVLLVI----YIR----------------------------------------------------- 189 (426)
T ss_pred ccCCHHHHHHHHHHHHHHHH----HHH-----------------------------------------------------
Confidence 54444443333222211110 000
Q ss_pred HHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHH
Q 047229 263 VLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTA 342 (599)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 342 (599)
...++..+.++ ++.++ +. + ..+...+.....++++++++.++.....
T Consensus 190 ------------~~~p~~~~~~~-----~~~~~-~~------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (426)
T PRK12307 190 ------------ARAPESKEWEE-----AKLSG-KG------K---------HSQSAWSVFSLSMKGLFNRAQFPLTLCV 236 (426)
T ss_pred ------------HHCCCChHHHH-----hhhhc-cc------c---------ccccchhhhhHHHHHHHhhchHHHHHHH
Confidence 00000000000 00000 00 0 0000001112346778888887654432
Q ss_pred HH---hhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 047229 343 TT---CSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419 (599)
Q Consensus 343 ~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 419 (599)
.. +..+....+..++|.+.++.|+++.+.+...+...+++.+++++.|++.||++||+ ....+.++..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~------~~~~~~~~~~~~~ 310 (426)
T PRK12307 237 FIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK------TFSIGLLMSFLFI 310 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHH
Confidence 22 22222333456778888888999888888889999999999999999999998775 3444444443333
Q ss_pred HHHHH-hhhhhHHHHHHHHHHH--hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 420 LLIAF-AVHNSLYFASIIIGFC--LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 420 ~~~~~-~~~~~~~i~~~l~g~~--~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
+.+.. .+.....+..++++++ ..+..+..+.++.|.+|++++|++.|+.+....+++. ++|.+.|.+.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~-~gp~~~g~l~~~ 383 (426)
T PRK12307 311 FPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGT-FNSMAATWLGIT 383 (426)
T ss_pred HHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHH-HHHHHHHHHHHc
Confidence 33222 2222222233333332 2334566778889999999999999999988888876 899999999887
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=255.99 Aligned_cols=380 Identities=12% Similarity=0.077 Sum_probs=259.4
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.+.++...|.+.+++|++.++.+++.+...++... .++.|++.||+|||+++.++.++..++.++++++ ++
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 81 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--------GA 81 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--------cC
Confidence 45667788899999999999999987777777765 8999999999999999999999888887766544 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHH-HHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLL-ACLPTIV 200 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~ 200 (599)
++.+++.|+++|++.+...+....++.|++| ++|++++++...+.++|..+++++...+.+...|++.+.. +....+.
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 5699999999999999999999888876654333333322 2222222
Q ss_pred HHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 047229 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNI 280 (599)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (599)
.++..+..++.+++++
T Consensus 162 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 177 (399)
T TIGR00893 162 GVLWLKFIPDPPQKAK---------------------------------------------------------------- 177 (399)
T ss_pred HHHhhheecCCCCccc----------------------------------------------------------------
Confidence 2211122221111000
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
...++++.. ..+.... + .+++++++......++.+++|+++...+..++.......+..+.+.+
T Consensus 178 ~~~~~~~~~-------~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (399)
T TIGR00893 178 WLTEEEKYI-------VVGGLLA-E--------QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTY 241 (399)
T ss_pred cCCHHHHhh-------cchhhcc-c--------cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 000000000 0000000 0 00011111223346788899999988888888777777777788888
Q ss_pred HHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH--HHHHHHHHHHh--hhhhHHHHHH
Q 047229 361 GKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF--SCIGYLLIAFA--VHNSLYFASI 435 (599)
Q Consensus 361 ~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~i~~~ 435 (599)
.++ .|.++.+.+...+...+++.+++++.|++.||++||+.. .......... ...+....... +.....+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (399)
T TIGR00893 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS--LVFARKTAIIAGLVLSLLMFATNYVNIPYAALALV 319 (399)
T ss_pred HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 766 688888899999999999999999999999999988511 1111111111 11111111111 1222233333
Q ss_pred HHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHH
Q 047229 436 IIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTI 515 (599)
Q Consensus 436 l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 515 (599)
+++.+..+..+....+..|.+|+++++++.|+.+....++.. ++|.+.|.+.|.. ++|+..|.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~~~i~g~l~~~~--------------g~~~~~~~~~ 384 (399)
T TIGR00893 320 ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGI-VGPIVIGAIAATT--------------GSFAGALMVV 384 (399)
T ss_pred HHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhh-hhhHHhhhhccCC--------------CchhHHHHHH
Confidence 333333336788889999999999999999999999999976 8999999998872 2388888888
Q ss_pred HHHHHHHHHHHHH
Q 047229 516 SAATFFACIVSII 528 (599)
Q Consensus 516 ~~~~~i~~i~~~~ 528 (599)
+++.+++.+..++
T Consensus 385 ~~~~~~~~~~~~~ 397 (399)
T TIGR00893 385 AALALIGALSYLL 397 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 8777776665543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=254.60 Aligned_cols=405 Identities=13% Similarity=0.115 Sum_probs=254.7
Q ss_pred hhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHH
Q 047229 26 SRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNF 103 (599)
Q Consensus 26 ~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~ 103 (599)
.+|.++....+....... .+.+....|.+++ +|+++++.+++.+.+.++... +++.|++.||+|||+++.++.++..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 356555444444333332 3445666777776 599999999977777777755 8999999999999999999988888
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhc
Q 047229 104 FGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
++.+..... .. ..++++.+++.|++.|++.|..++.....+.+++| ++||+++++.+.+.++|+.+++++.....
T Consensus 103 ~~~~~~~~~--~~--~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~ 178 (438)
T TIGR00712 103 AVMLLMGFV--PW--ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM 178 (438)
T ss_pred HHHHHHhcc--cc--ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 886654332 10 11467778889999999999998888889999997 57999999999999999999888766543
Q ss_pred CC-ChHHHHHHH-HHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHH
Q 047229 183 GD-NTKALILLL-ACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALV 260 (599)
Q Consensus 183 ~~-~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (599)
.. ..|+..++. +....+..++..++++
T Consensus 179 ~~~~~w~~~f~~~~~~~~i~~~~~~~~~~--------------------------------------------------- 207 (438)
T TIGR00712 179 AWFNDWHAALYFPAICAIIVALFAFAMMR--------------------------------------------------- 207 (438)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------------------
Confidence 31 222222222 2211111111111111
Q ss_pred HHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHH
Q 047229 261 VVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILF 340 (599)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (599)
+.+++...++.+..+ ++.+++ . . + +.+.+.+.++...+..+|++.+|...
T Consensus 208 ---------------~~~~~~~~~~~~~~~---~~~~~~-----~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (438)
T TIGR00712 208 ---------------DTPQSCGLPPIEEYR---NDYPDD-----Y-----N-E-KAEQELTAKEIFMQYVLPNKLLWYIA 257 (438)
T ss_pred ---------------CCHHhcCCCCchhcc---cccccc-----c-----c-c-ccccccchHHHHHHHHccCchHHHHH
Confidence 111100000000000 000000 0 0 0 00000000111123478899999887
Q ss_pred HHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 047229 341 TATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419 (599)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 419 (599)
+..++.....+....++|.++++ .|+++.++++...+..+.++++++++|+++||++++++. ...........++.
T Consensus 258 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~---~~~~~~~~~~~~~~ 334 (438)
T TIGR00712 258 IANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG---ATGVFFMTLVTIAV 334 (438)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc---HHHHHHHHHHHHHH
Confidence 77766666666677888999887 599999999999999999999999999999999754311 11111111111222
Q ss_pred HHHHHh---hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcC
Q 047229 420 LLIAFA---VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG 496 (599)
Q Consensus 420 ~~~~~~---~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~ 496 (599)
..+... +.....+..++.|++..+..........|.+|++.+|++.|+.+....+++..++|.+.|.+.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~------ 408 (438)
T TIGR00712 335 IVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF------ 408 (438)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh------
Confidence 221111 12222233334444333322233356789999999999999998887777655899999999997
Q ss_pred CCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 497 KGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 497 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+|..+|++..++.+++.+..+++.+++|
T Consensus 409 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 409 ---------FGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred ---------ccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34889999888888888888777776655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=237.22 Aligned_cols=380 Identities=14% Similarity=0.114 Sum_probs=262.0
Q ss_pred HHHHHHHHHHH-HhhhhHHHHHhhHHHHHhHhCCCHHHHHHH-HHHHHhHhhhhhhhhhhhcccCChHHHHHHHHHHHHH
Q 047229 28 WFMFFATLLIM-SVNGSSYMFALYSNDIKSSLGYDQTTLNLV-SFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSIMNFFG 105 (599)
Q Consensus 28 w~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g 105 (599)
+..+..+++.. .+....+.++++.+.+.+++|+|++|.+++ ......+.++.++.|.+.||||.|++..++.++..+-
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP 92 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP 92 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence 33334443333 233447788999999999999999999996 4455566677999999999999999999999999998
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCC
Q 047229 106 FFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD 184 (599)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~ 184 (599)
.+..+.+.+ . ++++++++++++.|++.+ .+.++...+++||| +++|.++|+.. ..++|..+...+.-.+..
T Consensus 93 ~~~~~~a~~--~---~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~- 164 (417)
T COG2223 93 CLGLAFAVT--Y---PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV- 164 (417)
T ss_pred HHHHHHHcc--C---CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH-
Confidence 776655522 2 667999999999999866 66789999999998 56999999998 555777666444332211
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHH
Q 047229 185 NTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVL 264 (599)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (599)
....- .|+.....+.... .+..
T Consensus 165 -----------------~~g~~-----------~w~~~~~i~~~~l-------~v~~----------------------- 186 (417)
T COG2223 165 -----------------AFGFL-----------AWRNVAGIYVVAL-------AIAA----------------------- 186 (417)
T ss_pred -----------------HHhhH-----------HHHHHHHHHHHHH-------HHHH-----------------------
Confidence 11000 0111111000000 0000
Q ss_pred HhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHH
Q 047229 265 SLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATT 344 (599)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 344 (599)
+-.....++.++.+ ...++.....++.++++++.|.+.+.++
T Consensus 187 ---v~~~~~~~d~p~~r-----------------------------------~~~~~~~~~~~~~v~~~~~~W~lsllY~ 228 (417)
T COG2223 187 ---VLAWLGMNDVPEHR-----------------------------------ASVKPQLPAQLKAVFSNKDTWLLSLLYF 228 (417)
T ss_pred ---HHHHHHhCCChhhh-----------------------------------ccccccchhHHHHHhcCcchHHHHHHHH
Confidence 00000001111100 0000001134677888999999999999
Q ss_pred hhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 047229 345 CSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIA 423 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 423 (599)
...+.+..+..++|.|+++ .|.++.+++.+.....+.+.+.|+++|+++||+|.++ .+......++++.....
T Consensus 229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r------v~~~~f~~~~~~~~~l~ 302 (417)
T COG2223 229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR------VTLAVFVGMALAAALLS 302 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 5999999999999999999999999999999998765 34444555555544433
Q ss_pred Hhh--------hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhc
Q 047229 424 FAV--------HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQ 495 (599)
Q Consensus 424 ~~~--------~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~ 495 (599)
... ....+...+..+++.|......+.+++.+++ ++.|.+.|+....+++|+. +-|...|..+|.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf-~lp~~~g~~~~~----- 375 (417)
T COG2223 303 LFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGF-FLPLAFGVSLDL----- 375 (417)
T ss_pred ccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhcccccc-chhHHHHHHHHh-----
Confidence 221 1222333344455555555555666666665 5889999999999999987 668889999998
Q ss_pred CCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047229 496 GKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRT 533 (599)
Q Consensus 496 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 533 (599)
++++...|+++..+.+++.+..+..+.+.
T Consensus 376 ---------tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 376 ---------TGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999888888877766554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=257.72 Aligned_cols=430 Identities=11% Similarity=0.015 Sum_probs=252.1
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHh-----CCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSL-----GYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLS 97 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~-----~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~i 97 (599)
+..+.++..+.+..+..+. ....+...|.+.+++ +.+..+.+++.+...++..+ +++.|++.||+|||+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3444455445555555555 445566677776642 45566778888888888766 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHH
Q 047229 98 GSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQ 176 (599)
Q Consensus 98 g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~ 176 (599)
+.++..++.++.+++.. .. ...++++++++|+++|++.|..++....++.|++| ++||+++++...+..+|..+++.
T Consensus 92 ~~~~~~v~~~~~~~~~~-~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 92 ELIIMIIATVASGLSPG-SS-PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHHHHHHHHHHHHHccC-cc-cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776544311 00 00237789999999999999999999999999998 56999999999988888888877
Q ss_pred HHHHhcC-----------------------CChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHH
Q 047229 177 IYHAVNG-----------------------DNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVL 233 (599)
Q Consensus 177 i~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (599)
+...+.. ++.|++.++++.+|.++.++..+++++.|+ |.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr---------~l--------- 231 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR---------YT--------- 231 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHH---------HH---------
Confidence 7654321 124666666676676665555555553333 11
Q ss_pred HHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhc
Q 047229 234 AGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLK 313 (599)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (599)
..+.+.++ +..+.+.+..+.+.+++ .++ .++.+
T Consensus 232 ---------------------------------------~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~---~~~~~ 264 (502)
T TIGR00887 232 ---------------------------------------ADVAKDVE---QAASDMSAVLQVKIEAE--PDE---VEKAS 264 (502)
T ss_pred ---------------------------------------HHhCcchH---HHHHHHHHHhccccccC--ccc---ccchh
Confidence 00000000 00000100000000000 000 00000
Q ss_pred ccCCCCCCCCChhHHHhhcc---hhH----HHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhh------------h
Q 047229 314 NVSKKPERGDDYALLQAIFS---IDM----LILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIAS------------F 374 (599)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~ 374 (599)
++ ++..+.++++++++ ++. +......++.....+....+.|.++++.|++..+++. .
T Consensus 265 ---~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~ 340 (502)
T TIGR00887 265 ---TA-VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGN 340 (502)
T ss_pred ---cc-ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHH
Confidence 00 00011235566543 121 1112222333333444556688888888887654321 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHH-HHHhhhHHHHHH
Q 047229 375 ISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA----VHNSLYFASIII-GFCLGAQLSLLV 449 (599)
Q Consensus 375 ~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~l~-g~~~g~~~~~~~ 449 (599)
..+..++.+++.++++++.||+|||+ ++..+..++.++..++... +........++. .++..+..+..+
T Consensus 341 ~~~~~~~~i~g~~~~~~l~dr~gRR~------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (502)
T TIGR00887 341 LIIALAGTVPGYWVTVFLVDIIGRKP------IQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTF 414 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchh------HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhh
Confidence 23344566778899999999999885 3444444444443333221 111111111122 222222345667
Q ss_pred HHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 450 TIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 450 ~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
.+.+|.+|++.|+++.|+.+..+.+++. ++|.+.+.+.|..+..++. ....++...|++.+++++++.+.. ++
T Consensus 415 ~~~~E~~p~~~R~~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~i~~-~~ 487 (502)
T TIGR00887 415 IVPGEVFPTRYRSTAHGISAASGKAGAI-IGQFGFLYLAQHGDPTKGY-----PTGIWMGHVLEIFALFMFLGILFT-LL 487 (502)
T ss_pred hhhhccCchhHHHHHHHHHHHHhhhHHH-HHHHHhhhhhccccccccc-----cccccchHHHHHHHHHHHHHHHHh-eE
Confidence 7889999999999999999999999976 8899999888752110000 001235667788877777766654 44
Q ss_pred Hhhhccccc
Q 047229 530 VLRTKNFYQ 538 (599)
Q Consensus 530 ~~~~~~~~~ 538 (599)
.+++++++.
T Consensus 488 lpEt~~~~l 496 (502)
T TIGR00887 488 IPETKGKSL 496 (502)
T ss_pred eccCCCCCH
Confidence 466665433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=261.51 Aligned_cols=402 Identities=12% Similarity=0.020 Sum_probs=248.9
Q ss_pred HHHHhhHHHHHhHhCCC--------HHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 047229 45 YMFALYSNDIKSSLGYD--------QTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSH 115 (599)
Q Consensus 45 ~~~~~~~~~l~~~~~~s--------~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~ 115 (599)
...+...|.+..+++.+ ..+.+++.+.+.++..+ ++++|++.||+|||++++++.+++.++.++..+. .
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~ 122 (481)
T TIGR00879 45 GVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--A 122 (481)
T ss_pred chhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--c
Confidence 34566677777777766 89999977777777755 8999999999999999999999998887665433 2
Q ss_pred cCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHH---HHhcCCChHHHHH
Q 047229 116 RFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIY---HAVNGDNTKALIL 191 (599)
Q Consensus 116 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~---~~~~~~~~~~~~~ 191 (599)
. ..+++.++++|+++|+|.+..++....++.+++| ++|++++++...+..+|..+++.+. ........|++.+
T Consensus 123 ~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 123 F---ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred c---ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 1 2456789999999999999999999999999997 5699999999999999999998887 3333344455544
Q ss_pred HHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchh
Q 047229 192 LLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLA 271 (599)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (599)
....++.++.++..+++++.|+....
T Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------------------------ 225 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFFLPESPRWLVG------------------------------------------------------ 225 (481)
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHH------------------------------------------------------
Confidence 44444444444333344322210000
Q ss_pred hhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhc---chhHHHHHHHHHhhhc
Q 047229 272 AVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIF---SIDMLILFTATTCSIG 348 (599)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~ 348 (599)
+++.+ +.++...+..+.++++.+..+..+......+.+.+..+.......+..+ .+.++...+..+....
T Consensus 226 ---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
T TIGR00879 226 ---KGRVE----EARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFT 298 (481)
T ss_pred ---cCChH----HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHh
Confidence 00000 0000000000000000000000000000000000000011111222222 2333444444444333
Q ss_pred chhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH----
Q 047229 349 GALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF---- 424 (599)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---- 424 (599)
.......+.+.+.++.|++..+++....+..++..+++++.|+++||++||+ .+..+.++.+++.+++..
T Consensus 299 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 372 (481)
T TIGR00879 299 GINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP------LLLIGAAGMAICLFVLGILGAS 372 (481)
T ss_pred CCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444556677777888999888888888999999999999999999998775 444445555555444331
Q ss_pred -hh------hhhHHHHHHHHHHHhhh-HHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcC
Q 047229 425 -AV------HNSLYFASIIIGFCLGA-QLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG 496 (599)
Q Consensus 425 -~~------~~~~~i~~~l~g~~~g~-~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~ 496 (599)
.+ .........+++.+.+. ..+....+..|.+|++.++++.|+.+....+++. ++|.+.+.+.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~-i~~~~~~~~~~~------ 445 (481)
T TIGR00879 373 FVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANF-IVGFLFPTMLES------ 445 (481)
T ss_pred ccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh------
Confidence 11 11122222333333332 2355567779999999999999999999999976 888899988887
Q ss_pred CCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 497 KGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 497 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+|...|++.+++++++.++..++.++++
T Consensus 446 ---------~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 446 ---------IGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred ---------cCccceehhHHHHHHHHHHHHheecccCC
Confidence 24778888888888887777766655444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-27 Score=242.25 Aligned_cols=362 Identities=9% Similarity=0.050 Sum_probs=244.6
Q ss_pred hhhHHHHHHHHHHHHhhh-hHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNG-SSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
++.|..+........... ..|......|++.+++|+++++.++..+...++. +.+++.|++.||+|||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~ 95 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL 95 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 345655444333333333 3555556789999999999999999665555555 45899999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++.+.+... ++++.+++.|+++|++.+...+....++.|++| ++|++++++...+.++|..++++++..+
T Consensus 96 ~~~~~~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l 167 (394)
T PRK10213 96 TLSCLLVSFA--------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFL 167 (394)
T ss_pred HHHHHHHHHH--------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887665433 789999999999999999999999999999997 5699999999999999999999988877
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 182 NGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
.+...|++.++......++..+
T Consensus 168 ~~~~gw~~~f~~~~~l~~~~~l---------------------------------------------------------- 189 (394)
T PRK10213 168 GELIGWRNVFNAAAVMGVLCIF---------------------------------------------------------- 189 (394)
T ss_pred HhhcCHHHHHHHHHHHHHHHHH----------------------------------------------------------
Confidence 6543333322221111000000
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFT 341 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (599)
.+ .+.. |++++ +++ +.....++.+++|.+|...+
T Consensus 190 -~~---------~~~~-------------------p~~~~--------------~~~---~~~~~~~~~l~~~~~~~~~~ 223 (394)
T PRK10213 190 -WI---------IKSL-------------------PSLPG--------------EPS---HQKQNTFRLLQRPGVMAGMI 223 (394)
T ss_pred -HH---------HHHC-------------------CCCCc--------------ccc---cchhHHHHHhcCHHHHHHHH
Confidence 00 0000 00000 000 01112467888999888766
Q ss_pred HHHhhhcchhhhhcch-HHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNM-GQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL 420 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 420 (599)
..++..........++ |.+.++.|+++.+.+......++++.+++++.+++.||.+++ .......+..+...+
T Consensus 224 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~------~l~~~~~~~~~~~~~ 297 (394)
T PRK10213 224 AIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL------ALAGAPLVLAVSALV 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHHHHHHH
Confidence 5555444444444454 556666799998889989999999999999999999985322 122222222333233
Q ss_pred HHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCC
Q 047229 421 LIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGG 499 (599)
Q Consensus 421 ~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~ 499 (599)
+.... +.....+..++.|++.+...+.....+.+..| ++.+...++......+|.. +||.+.|.++|..
T Consensus 298 l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~-~G~~l~G~l~~~~-------- 367 (394)
T PRK10213 298 LTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANT-CGAAIGGYALDNI-------- 367 (394)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc--------
Confidence 32222 33445556777899998888888888888886 5566777776667777765 8999999999973
Q ss_pred ccccCcchHHHHHHHHHHHHHH
Q 047229 500 LNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 500 ~~~~~~~~~~~~f~~~~~~~~i 521 (599)
+++..+...+++.++
T Consensus 368 -------g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 368 -------GLTSPLMLSGTLMLL 382 (394)
T ss_pred -------ChhhHHHHHHHHHHH
Confidence 466666666554433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=259.56 Aligned_cols=402 Identities=11% Similarity=0.056 Sum_probs=260.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHh----------------------HhCCCHHHHHHHHHHHHhHhhh-
Q 047229 23 LLDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKS----------------------SLGYDQTTLNLVSFFKDLGGNL- 78 (599)
Q Consensus 23 ~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~----------------------~~~~s~~~~~~~~~~~~~~~~~- 78 (599)
..+.||.+....++....... ....+...+.+.+ |++++.++.+++.+.+.+++.+
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 456778766655554443322 4445666666655 7999999999987777777765
Q ss_pred hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCcc
Q 047229 79 GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRG 157 (599)
Q Consensus 79 ~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg 157 (599)
+++.|++.||+|+|+++.++.++..++.++...+.. .+++.+++.|+++|++.+..++....++.+|+| ++|+
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~ 166 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS 166 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence 899999999999999999999988888665533311 356788999999999999999999999999998 5799
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHhcCCC-hHHHHH-HHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHH
Q 047229 158 VVIGLLKGLIGLSGAIMTQIYHAVNGDN-TKALIL-LLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAG 235 (599)
Q Consensus 158 ~~~g~~~~~~~lg~~i~~~i~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (599)
+++++...+..+|..+++++.+.+.+.. .|++.+ +.++..++..++.....
T Consensus 167 ~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~--------------------------- 219 (465)
T TIGR00894 167 RLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP--------------------------- 219 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh---------------------------
Confidence 9999999999999999998887765431 222221 11111111111111111
Q ss_pred HHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhccc
Q 047229 236 FIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNV 315 (599)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (599)
++.+++.+.+++++.+. .+ +..+ .
T Consensus 220 ---------------------------------------~~~p~~~~~~~~~~~~~-i~---------------~~~~-~ 243 (465)
T TIGR00894 220 ---------------------------------------ADDPSIHPCISKFEKKY-IN---------------SSLQ-G 243 (465)
T ss_pred ---------------------------------------cCCcccCCCCCHHHHHH-HH---------------hhcc-c
Confidence 11111000000000000 00 0000 0
Q ss_pred CCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhh
Q 047229 316 SKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASE 394 (599)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~d 394 (599)
+++ +......++++++++.+|...+..++.....+.+..++|.++++ +|++..+++...++..++..++.++.|+++|
T Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d 322 (465)
T TIGR00894 244 QKG-STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLAD 322 (465)
T ss_pred ccC-CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01112347889999999999988888877777788889988876 6999999999999999999999999999999
Q ss_pred hhhhhccCCchHH--HHHHHHHH--HHHHHHHHH-hh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhh
Q 047229 395 IFLAKYKVPRPLL--LTLVILFS--CIGYLLIAF-AV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVG 468 (599)
Q Consensus 395 r~g~r~~~~~~~~--~~~~~~~~--~~~~~~~~~-~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~ 468 (599)
|+++|+...+... +..+.... .+..+.... .. .....+...+.+.+.+...+.......|..| +..|.+.|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~ 401 (465)
T TIGR00894 323 FLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGIT 401 (465)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHH
Confidence 9987653333221 11111111 111111111 11 1222333344445555444544455566665 5899999999
Q ss_pred hccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 047229 469 SVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSII 528 (599)
Q Consensus 469 ~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 528 (599)
++.+.+++. ++|.+.|.+.|... .++|...|.+.+++.+++.++..+
T Consensus 402 ~~~~~l~~~-i~p~l~g~~~~~~~------------~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 402 GLPGFIGGL-IASTLAGNILSQDS------------KNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHH-HHHHhhheeeCCCC------------chHHHHHHHHHHHHHHHHHHHeee
Confidence 999999986 78888888776521 135888999888877777665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=249.66 Aligned_cols=376 Identities=14% Similarity=0.133 Sum_probs=242.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHH
Q 047229 23 LLDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSI 100 (599)
Q Consensus 23 ~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~ 100 (599)
.++++|..+...++..+..+. .+..+...|.+.+++|++.++.+++.+...++..+ +++.|++.||+|||+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 346778777777777766666 66778899999999999999999977777777655 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHH
Q 047229 101 MNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYH 179 (599)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~ 179 (599)
+..++.+.+.+. ++++.+++.|+++|++.+..++....++.+++| ++|+++.++...+.++|..+++.+..
T Consensus 86 ~~~~~~~~~~~~--------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 86 LFSAGTLACGFA--------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHHHHHHHh--------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887665433 679999999999999999999999999999997 56999999999999999999988877
Q ss_pred HhcCCC--hHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHH
Q 047229 180 AVNGDN--TKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIAT 257 (599)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (599)
.+.+.. .|++.+....++.++.++....++ ++
T Consensus 158 ~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~---~~------------------------------------------- 191 (405)
T TIGR00891 158 LVVPVWGDGWRALFFISILPIIFALWLRKNIP---EA------------------------------------------- 191 (405)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHhCC---CC-------------------------------------------
Confidence 765432 244433333333222221111111 00
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhc-ch-h
Q 047229 258 ALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIF-SI-D 335 (599)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~ 335 (599)
+++.+++ +... ...+...+. ...+...+...+......++..+ ++ .
T Consensus 192 ---------------------~~~~~~~-~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (405)
T TIGR00891 192 ---------------------EDWKEKH-AGKA------LVRTMVDIL----YGGEHRIANIVMTLAAAMVQSAGKRWPT 239 (405)
T ss_pred ---------------------hhHHHHh-hhhh------hhhhHHHHH----hccchhhhhhhhhhhHHhhhhhhhhhHH
Confidence 0000000 0000 000000000 00000000000000000111111 11 1
Q ss_pred HHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 047229 336 MLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 414 (599)
+..+................++|.++.+ .|++..+.+.+.+...++..+++++.|++.||++||+ .+..+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~------~~~~~~~~ 313 (405)
T TIGR00891 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK------AYVCSLLA 313 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh------hhHHHHHH
Confidence 2222222222222223344566777654 6999999999999999999999999999999998875 23333332
Q ss_pred HHHH-HHHHHHhhh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 415 SCIG-YLLIAFAVH-NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 415 ~~~~-~~~~~~~~~-~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
..+. ..+....+. ....+..++.+++.+...+..+.++.|.+|++++|++.|+.+....+++. ++|++.|.+.|..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~g~~~~g~l~~~~ 391 (405)
T TIGR00891 314 GQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA-LAPIIGALLAQRL 391 (405)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 2221 222222222 23334445666766777788889999999999999999999998899876 8999999999983
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-27 Score=243.27 Aligned_cols=350 Identities=14% Similarity=0.038 Sum_probs=231.5
Q ss_pred hhHH-HHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHH
Q 047229 49 LYSN-DIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQM 126 (599)
Q Consensus 49 ~~~~-~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l 126 (599)
++.| .+++++|.|+++.+++.+...++..+ +++.|++.||+|||+++.++.++..++.+.+.+..........+++++
T Consensus 36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (399)
T PRK05122 36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLL 115 (399)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence 3444 47889999999999987777777755 999999999999999999999888777655443321110011357788
Q ss_pred HHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFI 205 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (599)
++.|+++|+|.+...+....++.+++| ++|++++++...+..+|..++++++..+.+...|++.++...+..++..
T Consensus 116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~--- 192 (399)
T PRK05122 116 LLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL--- 192 (399)
T ss_pred HHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH---
Confidence 999999999999999888888889886 6799999998888888888888887766543222221111100000000
Q ss_pred hccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchh
Q 047229 206 PTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNK 285 (599)
Q Consensus 206 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (599)
...++.
T Consensus 193 ------------------------------------------------------------------~~~~~~-------- 198 (399)
T PRK05122 193 ------------------------------------------------------------------LLARPR-------- 198 (399)
T ss_pred ------------------------------------------------------------------HHHhcC--------
Confidence 000000
Q ss_pred hhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcC
Q 047229 286 LQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALG 365 (599)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 365 (599)
|++.. +++ ++.++++.+++ +|.......+..........+++.++.+.|
T Consensus 199 -----------~~~~~--------------~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (399)
T PRK05122 199 -----------PAVPP--------------VKG----ERLPFRRVLGR--VWPYGMGLALASIGFGTIATFITLYYAARG 247 (399)
T ss_pred -----------CCCCC--------------CCc----cchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00000 000 00012222322 222221122222222234455666776666
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhH
Q 047229 366 YPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQ 444 (599)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~ 444 (599)
. .+.+...+...++..+++++.|++.||+++|+ .+..+..+..++.+++... +.....+..++.|++.+..
T Consensus 248 ~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 319 (399)
T PRK05122 248 W--DGAALALTLFGVAFVGARLLFGNLINRLGGLR------VAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV 319 (399)
T ss_pred c--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHH
Confidence 6 34566677888899999999999999998764 4445555555555444333 3334555667789999888
Q ss_pred HHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHH
Q 047229 445 LSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACI 524 (599)
Q Consensus 445 ~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i 524 (599)
++.......|.+|++++|++.|+.+....+|.. ++|.+.|.+.|. .+|+..|++.+++.+++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~---------------~g~~~~~~~~~~~~~~~~~ 383 (399)
T PRK05122 320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLG-ITGPLAGLVASW---------------FGYPSIFLAAALAALLGLA 383 (399)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------------cCHHHHHHHHHHHHHHHHH
Confidence 888788888999999999999999998888875 778889999887 3589999988888777766
Q ss_pred HHHHHH
Q 047229 525 VSIILV 530 (599)
Q Consensus 525 ~~~~~~ 530 (599)
...++.
T Consensus 384 ~~~~~~ 389 (399)
T PRK05122 384 LTWLLY 389 (399)
T ss_pred HHHHhc
Confidence 655443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=251.51 Aligned_cols=380 Identities=14% Similarity=0.148 Sum_probs=239.5
Q ss_pred hhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHH
Q 047229 26 SRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNF 103 (599)
Q Consensus 26 ~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~ 103 (599)
++|..+....+..+..+. .+..+...|.+.+++|++..+.+++.+...++... +++.|++.||+|||+++.++.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455554444444444444 45567788999999999999999976666677655 8999999999999999999999888
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhc
Q 047229 104 FGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
++.+.+.+. ++++.+++.|++.|++.+..++....++.+++| ++|+++.++...+..+|..+++.+...+.
T Consensus 97 ~~~~~~~~~--------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 97 VGTLACGFA--------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887766543 679999999999999999999999999999997 56999999999999999999998888777
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHH
Q 047229 183 GDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVV 262 (599)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (599)
+...|++.++.+.+++++.++....+ |+.+
T Consensus 169 ~~~~w~~~f~~~~~~~~~~~~~~~~~---p~~~----------------------------------------------- 198 (496)
T PRK03893 169 PVWGWRALFFIGILPIIFALWLRKNL---PEAE----------------------------------------------- 198 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhC---CCch-----------------------------------------------
Confidence 65555554444333322221111111 1100
Q ss_pred HHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCCh-----------------
Q 047229 263 VLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDY----------------- 325 (599)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 325 (599)
++++++ ++... ..+ ..+. ..+.+++....
T Consensus 199 -----------------~~~~~~----------~~~~~--~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (496)
T PRK03893 199 -----------------DWKEKH----------AGKAP--VRT--MVDI---LYRGEHRIINILLTLAAAAALWFCFAGN 244 (496)
T ss_pred -----------------hhhhhc----------ccccc--chh--HHHH---HhcchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000 00000 000 0000 00000000000
Q ss_pred ---hH-----------------HH--hhcchhHHHHHHHHHhhhcchhhhhcchHHHHH-HcCCCCcchhhhHHHHHHHH
Q 047229 326 ---AL-----------------LQ--AIFSIDMLILFTATTCSIGGALAAIDNMGQIGK-ALGYPTHSIASFISLISIWN 382 (599)
Q Consensus 326 ---~~-----------------~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~i~~ 382 (599)
.+ .+ ..+.+.........+...........++|.+++ +.|++..+.+.+.+...++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~ 324 (496)
T PRK03893 245 LQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGA 324 (496)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 00 00 000011111111222222222234456788885 67999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-hhhh--hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCC
Q 047229 383 FLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-AVHN--SLYFASIIIGFCLGAQLSLLVTIISELFGLK 459 (599)
Q Consensus 383 ~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~ 459 (599)
.+++++.|+++||+++|+ .+..+..+..+..+++.. .+.. ...+..++.++...+..+..+.++.|.+|++
T Consensus 325 ~~g~~~~g~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (496)
T PRK03893 325 AVGCCVGGFLGDWLGTRK------AYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE 398 (496)
T ss_pred HHHHHHHHHHHHHhcchH------HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH
Confidence 999999999999998775 333343333333322221 1111 1222223333333334566778899999999
Q ss_pred cccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 460 HYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 460 ~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
.+|+++|+.+....+|+. ++|.+.|.+.|. .+|...+...+++.
T Consensus 399 ~~g~~~~~~~~~~~~g~~-lgp~l~g~l~~~---------------~g~~~~~~~~~~~~ 442 (496)
T PRK03893 399 QRAAGLGFTYNVGALGGA-LAPILGALIAQR---------------LDLGTALASLSFSL 442 (496)
T ss_pred HhhcccchhhhhhhHHHH-HHHHHHHHHhcc---------------CChHHHHHHHHHHH
Confidence 999999999988889876 899999999987 34776666555443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=245.32 Aligned_cols=385 Identities=11% Similarity=0.037 Sum_probs=252.8
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.+.+....|.+.+++|.+..+.+++.+.+.++.. ..++.|+++||+|||++++.+.++..++.+.+.+. ++
T Consensus 26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 97 (471)
T PRK10504 26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--------GT 97 (471)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--------CC
Confidence 4556678899999999999999997777777765 48899999999999999999988888876654332 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.+++.|+++|+|.+...+.....+.+++| ++|+++.++......+|..+++++.+.+.+...|++.+........+.
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~ 177 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG 177 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 8899999999999999999988889999998 468999999999889999999999888877655655544433322222
Q ss_pred HH-hhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 047229 202 IV-FIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNI 280 (599)
Q Consensus 202 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (599)
.+ .....+..+. . +.+++..+......+........... + ..++ ...............+.....++.+
T Consensus 178 ~~~~~~~~~~~~~---~--~~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 247 (471)
T PRK10504 178 AIATLMLMPNYTM---Q--TRRFDLSGFLLLAVGMATLTLALDGS--K-GLGL-SPLAIAGLVAVGVVALLLYLLHARN- 247 (471)
T ss_pred HHHHHHhCCCccc---c--CCCCChHHHHHHHHHHHHHHHHHhcC--C-cCCc-chHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 22 2222222111 1 11222112221122222222211111 0 0000 0000000000000001111111000
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
.+ + ...+ .+++||++++...+..++............|++
T Consensus 248 -----------------------------------~~--~--~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (471)
T PRK10504 248 -----------------------------------NN--R--ALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVF 287 (471)
T ss_pred -----------------------------------CC--C--CccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0011 357899998887777776655544455567777
Q ss_pred HHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh--hh--hHHHHHH
Q 047229 361 GKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV--HN--SLYFASI 435 (599)
Q Consensus 361 ~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~i~~~ 435 (599)
.+. .|.++.+.+.......++..++.++.|++.||+++|+ .+..+..+..+...++.... .. ...+..+
T Consensus 288 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (471)
T PRK10504 288 LQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRR------VLVATTLGLALVSLLFMLVALLGWYYLLPFVLF 361 (471)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 775 6999999998888888989999999999999998775 44555554554443333221 11 2234455
Q ss_pred HHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhh
Q 047229 436 IIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREAL 493 (599)
Q Consensus 436 l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~ 493 (599)
+.|++.+..++....+..+.+|++.+|.++|+.++...+|.. +|+.+.|.+.+..+.
T Consensus 362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMS-IGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Confidence 667888888888889999999999999999999999999976 899999998887653
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=254.11 Aligned_cols=419 Identities=11% Similarity=0.036 Sum_probs=241.4
Q ss_pred HHHHHHHHHHhhhh-HHHHHhhHHHHHhHh--------CCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHH
Q 047229 30 MFFATLLIMSVNGS-SYMFALYSNDIKSSL--------GYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGS 99 (599)
Q Consensus 30 ~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~--------~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~ 99 (599)
..+++.+..+..+. ....+...|.+++++ ++++++.+++.+.+.++..+ +++.|+++||+|||++++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~ 92 (479)
T PRK10077 13 ITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAA 92 (479)
T ss_pred HHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33333344444444 334455667777766 89999999988888888765 889999999999999999999
Q ss_pred HHHHHHHHHHHHHHh----ccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHH
Q 047229 100 IMNFFGFFMIWLSVS----HRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIM 174 (599)
Q Consensus 100 ~~~~~g~~~~~~~~~----~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~ 174 (599)
+++.++.+..++... ......+.++.++++|+++|++.|..++....++.|++| ++||+++++...+..+|..++
T Consensus 93 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~ 172 (479)
T PRK10077 93 VLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVV 172 (479)
T ss_pred HHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 998888665543210 000011336678899999999999999999999999997 569999999999988988887
Q ss_pred HHHHHHhc--------CCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 047229 175 TQIYHAVN--------GDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNK 246 (599)
Q Consensus 175 ~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (599)
+.+...+. +...|++.++...++.++..+..+++++.|+. .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~---------l---------------------- 221 (479)
T PRK10077 173 YFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRY---------L---------------------- 221 (479)
T ss_pred HHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHH---------H----------------------
Confidence 65544332 12234444444433333333223333322110 0
Q ss_pred cccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChh
Q 047229 247 LRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYA 326 (599)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (599)
..+.+.++.+...+... .+.+.+ + ..++..+...++.. .
T Consensus 222 -------------------------------~~~~~~~~~~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~--~--- 260 (479)
T PRK10077 222 -------------------------------MSRGKQEQAEGILRKIM-GNTLAT---Q-ALQEIKHSLDHGRK--T--- 260 (479)
T ss_pred -------------------------------HHcCCHHHHHHHHHHHc-CChhHH---H-HHHHHHHHHHHhhh--h---
Confidence 00000000000000000 000000 0 00000000000000 0
Q ss_pred HHHhhcchhHHHH---HHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCC
Q 047229 327 LLQAIFSIDMLIL---FTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVP 403 (599)
Q Consensus 327 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~ 403 (599)
.+..+........ ....+..........++.|.+.++.|.+...........++.+.++.+++|+++||++||+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~--- 337 (479)
T PRK10077 261 GGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP--- 337 (479)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChH---
Confidence 0011111001111 1111111222223345567777788988777777777888999999999999999998775
Q ss_pred chHHHHHHHHHHHHHHHHHHHh---hhh--hHHHHHHHHHHHhhhH-HHHHHHHHHHhhCCCcccchhhhhhccchhhhh
Q 047229 404 RPLLLTLVILFSCIGYLLIAFA---VHN--SLYFASIIIGFCLGAQ-LSLLVTIISELFGLKHYSTLYNVGSVSSPIGSY 477 (599)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~~~l~g~~~g~~-~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~ 477 (599)
++..+..+++++.+.+... +.. ......++++++.+.. .+..+.+++|.+|+++|+++.|+.+....++..
T Consensus 338 ---~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~ 414 (479)
T PRK10077 338 ---LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY 414 (479)
T ss_pred ---HHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHH
Confidence 5566666666655544322 111 2223334444444432 356788999999999999999999988888875
Q ss_pred HhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047229 478 IFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNF 536 (599)
Q Consensus 478 i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~ 536 (599)
+++.+.+.+.+.....+ ..++...|++.+++++++.++.+++.+++|++
T Consensus 415 -~~~~~~p~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 415 -FVSWTFPMMDKNSWLVA---------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred -HHHHHhHHHHhccchhh---------hccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 66555554432100000 02356677777777777777666666665543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=238.35 Aligned_cols=377 Identities=11% Similarity=0.071 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHhhHHH-HHhHh--CCCHHHHHHHHH-----HHHhHhhh-hhhhhhhhcccCChHHHHH
Q 047229 28 WFMFFATLLIMSVNGS-SYMFALYSND-IKSSL--GYDQTTLNLVSF-----FKDLGGNL-GVLAGLTYEVAPPWIVLLS 97 (599)
Q Consensus 28 w~~~~~~~~~~~~~g~-~~~~~~~~~~-l~~~~--~~s~~~~~~~~~-----~~~~~~~~-~~~~G~l~Dr~G~r~~~~i 97 (599)
|..+..+++..+..+. ...++.+.|. +.+++ +.++. .+++.+ ...++..+ +++.|+++||+|||+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~ 99 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence 3444444444444444 5556666664 55565 67766 455322 22233333 6789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChhHH--------HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhh
Q 047229 98 GSIMNFFGFFMIWLSVSHRFGAKPHVW--------QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIG 168 (599)
Q Consensus 98 g~~~~~~g~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~ 168 (599)
+.+++.+++++++++ +++. .++++|+++|++.|..++....++.|++| ++||+..+....+..
T Consensus 100 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~ 171 (438)
T PRK09952 100 TVWMMGIATALIGLL--------PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYG 171 (438)
T ss_pred HHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 999999987766443 5555 58889999999999999999999999998 569999999998888
Q ss_pred hhHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHH
Q 047229 169 LSGAIMTQIYHAVNG--------DNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVT 240 (599)
Q Consensus 169 lg~~i~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (599)
+|..++..+...+.. ...|++.++...++.++.+
T Consensus 172 ~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-------------------------------------- 213 (438)
T PRK09952 172 VGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-------------------------------------- 213 (438)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH--------------------------------------
Confidence 888887666554321 1122222222111110000
Q ss_pred HHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCC
Q 047229 241 IIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPE 320 (599)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (599)
..++..++.. +...+ .. +.++. +
T Consensus 214 --------------------------------~l~~~~~es~----~~~~~-----~~---------------~~~~~-~ 236 (438)
T PRK09952 214 --------------------------------WVRNGMEESA----EFEQQ-----QH---------------EQAAA-K 236 (438)
T ss_pred --------------------------------HHHHhCCCCh----hHHHH-----Hh---------------hcccc-c
Confidence 0011000000 00000 00 00000 0
Q ss_pred CCCChhHHHhhcchhHHHHHH-HHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 047229 321 RGDDYALLQAIFSIDMLILFT-ATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLA 398 (599)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~ 398 (599)
+ +....+.++++++.|...+ ..++.....+....+.+.+.++ .|++...........++...++.++.|+++||++|
T Consensus 237 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~gr 315 (438)
T PRK09952 237 K-RIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGR 315 (438)
T ss_pred c-cCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 0 0011234567777666543 3334344445556677777654 68876655455556677888899999999999998
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHH--H-h-hhhh-HHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhcc-c
Q 047229 399 KYKVPRPLLLTLVILFSCIGYLLIA--F-A-VHNS-LYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVS-S 472 (599)
Q Consensus 399 r~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~-~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~-~ 472 (599)
|+ .+..+.++.+++...+. . . +... ..+..++.+++.+...+..+++.+|.+|.+.|+++.|+.+.. .
T Consensus 316 r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~ 389 (438)
T PRK09952 316 RR------VYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVAS 389 (438)
T ss_pred hH------HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHH
Confidence 75 23333333333222111 1 1 1122 233445557788887888899999999999999999986544 4
Q ss_pred hhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 473 PIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 473 ~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
.+++. ++|.+.+.+.|..+ ++|...+....++.+++.+..+.+
T Consensus 390 ~lgg~-~~p~i~g~l~~~~~-------------~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 390 VVGGG-FTPFIAAALVTYFG-------------GSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHH-HHHHHHHHHHHhcC-------------CCchHHHHHHHHHHHHHHHHHHHc
Confidence 46765 88999999988631 347777777777777776665543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-27 Score=238.55 Aligned_cols=342 Identities=12% Similarity=0.058 Sum_probs=237.0
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.....++.|.+.+++|.|.++.+++.+.+.++..+ +++.|++.||+|||+++.++.++..++.+.++.+ +|
T Consensus 22 ~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--------~~ 93 (381)
T PRK03633 22 IAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--------VG 93 (381)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cc
Confidence 34456778999999999999999987777777765 8999999999999999999999998887665443 77
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.++++|+++|++.+...+.....+.+..| ++|++++++...+..+|..+++.+...+.+...+...+....
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~------ 167 (381)
T PRK03633 94 FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGL------ 167 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH------
Confidence 9999999999999999888777777777775 679999999999999999999888776543211110000000
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
. ... . +++. ..+.+
T Consensus 168 ---------------------------~--~~~----------------------------~----~~~~-~~~~~---- 181 (381)
T PRK03633 168 ---------------------------V--LAA----------------------------I----LPLL-FTRIL---- 181 (381)
T ss_pred ---------------------------H--HHH----------------------------H----HHHH-Hhccc----
Confidence 0 000 0 0000 00000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
++++ +++ +..+.++.++++.++......+...........++|.+.
T Consensus 182 ---------------~~~~---------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 227 (381)
T PRK03633 182 ---------------NQQA---------------ENH----DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYL 227 (381)
T ss_pred ---------------CCCC---------------CCC----CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 011245677888877654433332222333445678888
Q ss_pred HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 047229 362 KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCL 441 (599)
Q Consensus 362 ~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~ 441 (599)
++.|.++.+.+...+...++..++++..|++.||+++|+ .+..+..+..++.+... ..........+.|++.
T Consensus 228 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~------~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~ 299 (381)
T PRK03633 228 NHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL------VLRVQVFVVILGSIAML--SQAAMAPALFILGAAG 299 (381)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH------HHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHH
Confidence 888999888888889999999999999999999998774 44444444444443332 1222333455667666
Q ss_pred hhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHH
Q 047229 442 GAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 442 g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 521 (599)
....|.....+.|..|+++++...+..++...+|.. ++|.+.|.+.|.. +++..|.+.+.+.++
T Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-igp~~~G~l~~~~---------------g~~~~f~~~~~~~l~ 363 (381)
T PRK03633 300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSL-LGPSFTAMLMQNY---------------SDNLLFIMIASVSFI 363 (381)
T ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh---------------CccHHHHHHHHHHHH
Confidence 667788888888999888888888888878888976 9999999999983 477788877666554
Q ss_pred HH
Q 047229 522 AC 523 (599)
Q Consensus 522 ~~ 523 (599)
..
T Consensus 364 ~~ 365 (381)
T PRK03633 364 YL 365 (381)
T ss_pred HH
Confidence 43
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=242.29 Aligned_cols=378 Identities=13% Similarity=0.090 Sum_probs=247.0
Q ss_pred hhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHH
Q 047229 24 LDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIM 101 (599)
Q Consensus 24 ~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~ 101 (599)
++++|..++.+++..+..+. .+.++.+.|.+.+++|.+..+.+++.+...++..+ .++.|++.||+|||+++.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34556666666655555554 55677889999999999999999987777777655 88999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHH
Q 047229 102 NFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHA 180 (599)
Q Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~ 180 (599)
..++.+++.+. ++++.+++.|++.|++.+..++....++.+++| ++|++++++...+..+|..+++.+.+.
T Consensus 92 ~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 163 (398)
T TIGR00895 92 FSVFTLLCALA--------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163 (398)
T ss_pred HHHHHHHHHHc--------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence 88876655332 678889999999999999999999999999998 569999999999999999999888877
Q ss_pred hcCCChHHHHH-HHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHH
Q 047229 181 VNGDNTKALIL-LLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATAL 259 (599)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (599)
+.+...|++.+ +.+..+.+..++...++++.++...
T Consensus 164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 200 (398)
T TIGR00895 164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLV------------------------------------------- 200 (398)
T ss_pred HhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHH-------------------------------------------
Confidence 76543333322 2222333332222222222111000
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhc---chhH
Q 047229 260 VVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIF---SIDM 336 (599)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~ 336 (599)
+++++ +..+...+..++...+.+.+.+ +++++++..+...+..++ .+..
T Consensus 201 ---------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (398)
T TIGR00895 201 ---------------SKRPE----TVRRIVNAIAPQMQAEAQSALP---------EQKATQGTKRSVFKALFQGKTARIT 252 (398)
T ss_pred ---------------hcCHH----HHHHHHHHHHHhcccccccccc---------ccccccchhhHHHHHHhcchhHHHH
Confidence 00000 0000000000000000000000 000000001111122222 2334
Q ss_pred HHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 047229 337 LILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSC 416 (599)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 416 (599)
+.+++..++..........+.|++.++.|+++.+.+...+...++..+++++.|++.||+++|+ ......+..+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~ 326 (398)
T TIGR00895 253 VLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV------TALLLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH------HHHHHHHHHH
Confidence 4444444444444455556677777778999999999999999999999999999999998662 2222222222
Q ss_pred HHHHHHH-HhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHH
Q 047229 417 IGYLLIA-FAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRL 487 (599)
Q Consensus 417 ~~~~~~~-~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~ 487 (599)
....+.. ..+....++..++.|++.+...+....+..|.+|+++++++.|+.+....+|.. ++|.+.|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~g~~~~G~l 397 (398)
T TIGR00895 327 FAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAI-IGPILAGYL 397 (398)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHhHHhc
Confidence 2222222 233445566777889999999999999999999999999999999998899976 889888764
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=235.30 Aligned_cols=349 Identities=14% Similarity=0.012 Sum_probs=226.4
Q ss_pred hhHH-HHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHH
Q 047229 49 LYSN-DIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQM 126 (599)
Q Consensus 49 ~~~~-~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l 126 (599)
+..| .+.+++|.|+++++++.+.+.++..+ +++.|+++||+|||++++++.+...++.+.............++++.+
T Consensus 36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (392)
T PRK12382 36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALL 115 (392)
T ss_pred hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Confidence 3444 46889999999999977777776654 999999999999999999988877665432211111000012578899
Q ss_pred HHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFI 205 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (599)
++.|+++|+|.+...+....++.+++| ++|++++++...+...|..+++++...+.+...|++......+
T Consensus 116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~--------- 186 (392)
T PRK12382 116 VVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV--------- 186 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH---------
Confidence 999999999999888888888899996 6799999999888888888888887665432222111000000
Q ss_pred hccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchh
Q 047229 206 PTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNK 285 (599)
Q Consensus 206 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (599)
..++. + ...++.++.
T Consensus 187 ------------------------------~~~~~------------------------~------~~~~~~~~~----- 201 (392)
T PRK12382 187 ------------------------------LPLLA------------------------W------AFNGTVRKV----- 201 (392)
T ss_pred ------------------------------HHHHH------------------------H------HHHHhccCC-----
Confidence 00000 0 000000000
Q ss_pred hhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcC
Q 047229 286 LQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALG 365 (599)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 365 (599)
+++ ++++ .+.++.++ .+|...+...+..........+.+.++++.|
T Consensus 202 ----------~~~----------------~~~~------~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 247 (392)
T PRK12382 202 ----------PAH----------------AGER------PSLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFASKG 247 (392)
T ss_pred ----------CCC----------------cccC------chHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 000 0000 01122221 1111111111111122233445666777766
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhH
Q 047229 366 YPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQ 444 (599)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~ 444 (599)
++ ..+.......++..+++++.|++.||+++|+ .+..+..+..++.+++...+ ....++..++.|++.+..
T Consensus 248 ~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 319 (392)
T PRK12382 248 WA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK------VAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI 319 (392)
T ss_pred Cc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe------ehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence 64 3455666777888999999999999998775 23444445555544443332 334455667778888888
Q ss_pred HHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHH
Q 047229 445 LSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACI 524 (599)
Q Consensus 445 ~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i 524 (599)
.+.......|.+|++++|++.|+.++...++.. ++|.+.|.+.|. .+|+..|.+.+++.+++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-ig~~~~g~l~~~---------------~g~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYG-VSGPLAGMLATS---------------FGYPSVFLAGAISAVLGII 383 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------------hCchHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999876 899999999998 3589999998887777776
Q ss_pred HHHHH
Q 047229 525 VSIIL 529 (599)
Q Consensus 525 ~~~~~ 529 (599)
+.+..
T Consensus 384 ~~~~~ 388 (392)
T PRK12382 384 VTILS 388 (392)
T ss_pred HHHhh
Confidence 65533
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-26 Score=233.56 Aligned_cols=351 Identities=13% Similarity=0.106 Sum_probs=234.8
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.+......|.+.+++|++.++.+++.+...++... +++.|++.||+|||+++.++.++..++.++++++ ++
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--------~~ 90 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--------SS 90 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--------Cc
Confidence 45667788999999999999999987777777765 8999999999999999999999999887766443 78
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.+++.|+++|++.+...+.....+.+++|+ +|++++++...+..+|..+++++.+.+.+...|++.+.......++.
T Consensus 91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~ 170 (382)
T PRK10091 91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAV 170 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888999975 69999999999999999999888776655433333222221111110
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
.+ ......|
T Consensus 171 ~~-----------------------------------------------------------~~~~~lp------------ 179 (382)
T PRK10091 171 LA-----------------------------------------------------------SIYFWVP------------ 179 (382)
T ss_pred HH-----------------------------------------------------------HHHHhCC------------
Confidence 00 0000000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+.+++ ++. ......+.++++.+|...+..++..........++++++
T Consensus 180 ----------------~~~~~-------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (382)
T PRK10091 180 ----------------DIRDE-------------AKG----GLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYM 226 (382)
T ss_pred ----------------CCCcc-------------ccc----CHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 001123466777777766655544333333444556666
Q ss_pred HH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-hh-hhhHHHHHHHHH
Q 047229 362 KA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-AV-HNSLYFASIIIG 438 (599)
Q Consensus 362 ~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~l~g 438 (599)
.+ .|+++.+.+...+..+++..+++++.|++.||+++|+ .+..+..+..++.+++.. .+ .....+..++.+
T Consensus 227 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK10091 227 MFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR------IAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC 300 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 54 6999999999999999999999999999999998764 445555555555443322 22 223333444455
Q ss_pred HHhhhHHHHHH-HHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHH
Q 047229 439 FCLGAQLSLLV-TIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISA 517 (599)
Q Consensus 439 ~~~g~~~~~~~-~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 517 (599)
++.+...+... ....+..+.+..+.+ ..+....+|.. +||.+.|.+.|.. .+|+..+.+.++
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~-~Gp~~~G~l~~~~--------------~~~~~~~~~~~~ 363 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSA-IGAYCGGMMLTLG--------------LAYNYVALPAAL 363 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHH-HHHHHhHHHHHcc--------------cCcchHHHHHHH
Confidence 55444443333 334444455555544 33556678865 9999999999972 468888888877
Q ss_pred HHHHHHHHHHHH
Q 047229 518 ATFFACIVSIIL 529 (599)
Q Consensus 518 ~~~i~~i~~~~~ 529 (599)
++++.......+
T Consensus 364 ~~~~~~~~~~~~ 375 (382)
T PRK10091 364 LSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHHHH
Confidence 666555544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=242.77 Aligned_cols=355 Identities=14% Similarity=0.123 Sum_probs=238.3
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
...++...|.+.+++|++.++.+++.+...++... .++.|++.||+|||+++.++.++..++.+++.++ ++
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 82 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--------TS 82 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--------hh
Confidence 55677888999999999999999987777777765 8999999999999999999999998887766544 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHH-HHHHhcCCChHHHHH-HHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQ-IYHAVNGDNTKALIL-LLACLPTI 199 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~-i~~~~~~~~~~~~~~-~~~~~~~~ 199 (599)
++.+++.|++.|++.+...+....++.+++| ++|++++++...+..+|..++++ +...+.....|++.+ ..+.+..+
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 8999999999999999999999999999998 56999999999999999999885 433333322222222 11222211
Q ss_pred HHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhh
Q 047229 200 VPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELN 279 (599)
Q Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (599)
..++..+..+ ++++
T Consensus 163 ~~~~~~~~~~------------------------------------------------------------------~~~~ 176 (379)
T TIGR00881 163 VSLICFLLLR------------------------------------------------------------------DSPQ 176 (379)
T ss_pred HHHHHheeeC------------------------------------------------------------------CCcc
Confidence 1111111111 1110
Q ss_pred hhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHH
Q 047229 280 IWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQ 359 (599)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (599)
+.+.++++ ++++++. +.+ +++++++.+..+...++++++|.+|.+.+..++.......+..+.+.
T Consensus 177 ~~~~~~~~------~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (379)
T TIGR00881 177 SCGLPPAE------EMPNEEP--DGD-------AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPL 241 (379)
T ss_pred ccccCccc------cCccccc--ccc-------cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000000 000 00001111112234567889999998887777766666666777888
Q ss_pred HHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHH
Q 047229 360 IGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF---AVHNSLYFASI 435 (599)
Q Consensus 360 ~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~ 435 (599)
+.++ .|+++.+++...+...+++.+++++.|++.||..+|+. ............++...... .+.....+..+
T Consensus 242 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
T TIGR00881 242 YLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR---GPLAVFFMALIIVSLLVYWLNPAANPLMDLICLF 318 (379)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 8765 59999999999999999999999999999998754431 11112222222222222221 11223334445
Q ss_pred HHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 436 IIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 436 l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
+.|+......+....+..|.+|++++|++.|+.+....+++. ++|.+.|.+.|..
T Consensus 319 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~ 373 (379)
T TIGR00881 319 ALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI-LAGLPLGYLADGF 373 (379)
T ss_pred HHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh-hhhhhHHHHHHhh
Confidence 556655555666677899999999999999999999999976 8999999999983
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-26 Score=232.65 Aligned_cols=357 Identities=12% Similarity=0.064 Sum_probs=235.4
Q ss_pred hHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHH
Q 047229 50 YSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCL 128 (599)
Q Consensus 50 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 128 (599)
+.+.+.+++|.++++.+++.+.+.++..+ +++.|++.||+|||+++..+.++..++.+.+... +. ..++++.+++
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~--~~~~~~~l~~ 110 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF--GL--GHANYPLILL 110 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--hc--cCccHHHHHH
Confidence 34556688999999999977777777654 9999999999999999999999888876543211 11 1246888889
Q ss_pred HHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhh
Q 047229 129 YMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSG-AIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIP 206 (599)
Q Consensus 129 ~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~-~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (599)
.|+++|+|.+...+.....+.+++| ++|++++|+...+.++|. .+++++.+.+.+...+
T Consensus 111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~------------------- 171 (402)
T TIGR00897 111 FYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE------------------- 171 (402)
T ss_pred HHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch-------------------
Confidence 9999999998877777777888875 679999999999988886 4566555544432111
Q ss_pred ccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhh
Q 047229 207 TIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKL 286 (599)
Q Consensus 207 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (599)
...++..... .... . ++. .+..+++++
T Consensus 172 -------------~~~~~~~~~~--~~~~-----~---------------------~~~-----~~~~~~~~~------- 198 (402)
T TIGR00897 172 -------------MNTLWSALAF--VLTG-----G---------------------VIA-----LFSNKDIFT------- 198 (402)
T ss_pred -------------HHHHHHHHHH--HHHH-----H---------------------HHH-----HhccCCCCC-------
Confidence 1111100000 0000 0 000 000010000
Q ss_pred hhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCC
Q 047229 287 QALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGY 366 (599)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 366 (599)
|++. + + +++.++....+++++|+|.+|...+..++.....+....+.|.+.++.|+
T Consensus 199 ----------~~~~--~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~ 254 (402)
T TIGR00897 199 ----------PQHM--Q-T-----------REKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGF 254 (402)
T ss_pred ----------cccc--c-C-----------CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0000 0 0 00000111235678899999988777777666666677788988888899
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH---HHH---hhhhhHHHHHHHHHHH
Q 047229 367 PTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLL---IAF---AVHNSLYFASIIIGFC 440 (599)
Q Consensus 367 ~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~i~~~l~g~~ 440 (599)
+..+.+...+...+++.+++++.|+++||+++|+. ....+.+...++... ... .+....++..++.|++
T Consensus 255 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-----~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~ 329 (402)
T TIGR00897 255 STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT-----VRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIF 329 (402)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-----HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 99988888888999999999999999999987641 111222222221111 111 1122344556667777
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHH
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATF 520 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 520 (599)
.+...+. .....|.. ++++|++.|+.+....+++. ++|++.|.+.|.. ++...|++.+++.+
T Consensus 330 ~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~-~gp~i~g~l~~~~---------------g~~~~~~~~a~~~~ 391 (402)
T TIGR00897 330 LAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAF-LAPAIAVLFIGFF---------------GAIGVVWIFAALYV 391 (402)
T ss_pred HHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc---------------chHHHHHHHHHHHH
Confidence 7765443 44556654 57899999999999999976 8999999999983 48888888888887
Q ss_pred HHHHHHHHH
Q 047229 521 FACIVSIIL 529 (599)
Q Consensus 521 i~~i~~~~~ 529 (599)
++.++..++
T Consensus 392 i~~~~~~~~ 400 (402)
T TIGR00897 392 VSAFLTAFI 400 (402)
T ss_pred HHHHHHHHh
Confidence 777776654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-26 Score=234.22 Aligned_cols=377 Identities=12% Similarity=0.067 Sum_probs=240.6
Q ss_pred hHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHH
Q 047229 27 RWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFF 104 (599)
Q Consensus 27 ~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~ 104 (599)
.+..+...+++++..+. ....+.+.|.+++++|+++++.+++.+.+.++..+ +++.|++.||+|||+++.++.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33443444444445555 56678889999999999999999987777777765 99999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCCC-ccchhHHHHHhhhhhHHHHHHHHHHhcC
Q 047229 105 GFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPES-RGVVIGLLKGLIGLSGAIMTQIYHAVNG 183 (599)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~-rg~~~g~~~~~~~lg~~i~~~i~~~~~~ 183 (599)
+.+++... ... ++++.++++|+++|+|.|...+....++.++.|++ |...+++.+...++|..+++.++..+..
T Consensus 104 ~~~l~~~~--~~a---~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~ 178 (438)
T PRK10133 104 GAALFWPA--AEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_pred HHHHHHHH--Hhc---CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 97665321 122 78999999999999999999999999988887755 5567999999999999998877665431
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhH-HHHHHHHHHHH-HHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 184 DNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVF-HSFLYILLVLA-GFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
.... +........ .. +. ....|+..+ ..|........ +...+..
T Consensus 179 ~~~~---------~~~~~~~~~-l~---~~-~~~~w~~~~~~~w~~~f~~~~~v~~~~~~-------------------- 224 (438)
T PRK10133 179 SNVP---------HQSQDVLDK-MT---PE-QLSAYKHSLVLSVQTPYMIIVAIVLLVAL-------------------- 224 (438)
T ss_pred cCCc---------ccchhhhhc-cC---hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 0000 000000000 00 00 000111111 01111110000 0000000
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFT 341 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (599)
....++.++. . +++ + . +++......+.++++++|.++...+
T Consensus 225 ---------~~~~~~~p~~-~--------------~~~-----~---------~-~~~~~~~~~~~~~ll~~~~~~~~~l 265 (438)
T PRK10133 225 ---------LIMLTKFPAL-Q--------------SDN-----H---------S-DAKQGSFSASLSRLARIRHWRWAVL 265 (438)
T ss_pred ---------HHHHhcCCCC-C--------------ccc-----c---------c-cccccchhhhHHHHHhCchHHHHHH
Confidence 0000000000 0 000 0 0 0000011123467889999887777
Q ss_pred HHHhhhcchhhhhcchHHHH-HH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIG-KA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 419 (599)
..++..+.......+.+.++ ++ .|+++.+++..+..+.++.++|++++|++.||+++|+ .+..+..+.++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~------~l~~~~~~~~~~~ 339 (438)
T PRK10133 266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK------VLAAYALIAMALC 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHH
Confidence 66666666665666777664 44 6999999999999999999999999999999998875 3444444444333
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 420 LLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++....+.........+.|++.+..+|...+...+.+|+ +.+++.++..+ ..+|+. ++|++.|.+.|.
T Consensus 340 ~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~-~~~~i~G~l~~~ 407 (438)
T PRK10133 340 LISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGG-IVTPVMGFVSDA 407 (438)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-Hhccch-HHHHHHHHHHHh
Confidence 333222222334567788999999999999999999874 57778887764 335555 678889988887
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-26 Score=235.81 Aligned_cols=356 Identities=11% Similarity=0.047 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHH-HHHHHHh--Hh----hhhhhhhhhhcccCChHHHHHHHH
Q 047229 29 FMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNL-VSFFKDL--GG----NLGVLAGLTYEVAPPWIVLLSGSI 100 (599)
Q Consensus 29 ~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~-~~~~~~~--~~----~~~~~~G~l~Dr~G~r~~~~ig~~ 100 (599)
......++..+.... ...++...|.+.++++.++.+.++ ..+.... +. +.+++.|++.||+|||++++.+.+
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 344444445555555 677889999999999998887665 3322222 12 236799999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChhHH--------HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhH
Q 047229 101 MNFFGFFMIWLSVSHRFGAKPHVW--------QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSG 171 (599)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~ 171 (599)
++.++.++++++ ++++ .++++|+++|++.+...+....++.|++| ++|++++++...+..+|.
T Consensus 95 ~~~~~~~l~~~~--------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~ 166 (434)
T PRK15075 95 IMASGTLLIAFV--------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV 166 (434)
T ss_pred HHHHHHHHHHhC--------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence 998887766443 4554 46889999999999999888899999997 669999999888877777
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCc
Q 047229 172 AIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTR 251 (599)
Q Consensus 172 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
.+++.++..+... +... .....+|+..|.. . ....
T Consensus 167 ~~g~~~g~~l~~~----------------------~~~~--~~~~~gWr~~f~~-~------~~~~-------------- 201 (434)
T PRK15075 167 VFAALLGYLLNQW----------------------LSPA--QMAEWGWRIPFLI-G------CLIV-------------- 201 (434)
T ss_pred HHHHHHHHHHHHh----------------------CCHH--HHhccchHHHHHH-H------HHHH--------------
Confidence 7666555443110 0000 0001222322220 0 0000
Q ss_pred hhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhh
Q 047229 252 SEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAI 331 (599)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 331 (599)
+..+..++..++ +++.. + +++++ .....+++..
T Consensus 202 -----------------~~~~~~~~~~~e----~~~~~--------------~----------~~~~~--~~~~~~~~~~ 234 (434)
T PRK15075 202 -----------------PFIFLIRRSLEE----TEEFL--------------A----------RKHRP--SMREIFRSLA 234 (434)
T ss_pred -----------------HHHHHHHHhcCC----CHHHH--------------H----------hhhcc--ccccHHHHHH
Confidence 000000111000 00000 0 00000 0011133344
Q ss_pred cchhHHHHH-HHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHH
Q 047229 332 FSIDMLILF-TATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLT 409 (599)
Q Consensus 332 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~ 409 (599)
++++.+... +..++..........+.|.++++ .|++..+++....+..+++.+++++.|+++||++||+ ...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~------~~~ 308 (434)
T PRK15075 235 ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP------VLI 308 (434)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HHH
Confidence 555555433 22333333445566778888877 6999888888888889999999999999999999875 222
Q ss_pred HHHHHHHH-HHHHH--HHhhh--hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhc-cchhhhhHhhhhH
Q 047229 410 LVILFSCI-GYLLI--AFAVH--NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSV-SSPIGSYIFNVRV 483 (599)
Q Consensus 410 ~~~~~~~~-~~~~~--~~~~~--~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~-~~~ig~~i~~~~l 483 (599)
.+.++..+ ....+ ...++ ........+.+++.+...+....+..|.+|++.++++.|+.+. +..+++. ++|.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~-~~p~~ 387 (434)
T PRK15075 309 AFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGG-FTPAI 387 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhh-hHHHH
Confidence 22222211 11111 11111 1222334455677777777777889999999999999998644 4444444 78999
Q ss_pred HHHHHhhh
Q 047229 484 AGRLYDRE 491 (599)
Q Consensus 484 ~g~~~~~~ 491 (599)
.|.+.|..
T Consensus 388 ~g~i~~~~ 395 (434)
T PRK15075 388 STWLIHVT 395 (434)
T ss_pred HHHHHHhc
Confidence 99999984
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=245.38 Aligned_cols=382 Identities=15% Similarity=0.134 Sum_probs=260.6
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
....+...|.+.+++|.+.++.+|+.+.+.++..+ .++.|++.||+|||++++++.++..++.++++.+ ++
T Consensus 18 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 89 (485)
T TIGR00711 18 STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--------PN 89 (485)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--------CC
Confidence 44567788999999999999999987777777765 8899999999999999999999998887765332 78
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.++++|+++|++.+...+....++.+++| ++|+++.++...+..+|..+++.+.+.+.+...|++.++......++.
T Consensus 90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~ 169 (485)
T TIGR00711 90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIV 169 (485)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHH
Confidence 9999999999999999999999999999997 679999999999999999999998888777655655544444333333
Q ss_pred -HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhc-ccccCch-hhhHHHHHHHHHHhhcchhhhhhhhh
Q 047229 202 -IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQN-KLRFTRS-EYIATALVVVVLSLFIPLAAVIKQEL 278 (599)
Q Consensus 202 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (599)
++..+.+++.++++ ..+.+..+......+........... ...+.+. +........ ...+ ..+..++.
T Consensus 170 ~~~~~~~~~~~~~~~----~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~ 240 (485)
T TIGR00711 170 VVVAFFILPRDKPAA----SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITG-LVAI----IAFVVWEL 240 (485)
T ss_pred HHHHHHHcCCccccc----cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHH-HHHH----HHHHHHHH
Confidence 33333344322211 11122222221121211111111110 0011000 100000000 0000 00000000
Q ss_pred hhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchH
Q 047229 279 NIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMG 358 (599)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (599)
..+++ ....+.+++++++...+..++.....+....++|
T Consensus 241 ------------------------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 279 (485)
T TIGR00711 241 ------------------------------------TDDNP-----LVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLP 279 (485)
T ss_pred ------------------------------------cCCCC-----ccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0114678888888877777666666666667788
Q ss_pred HHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-h----hhhhHHH
Q 047229 359 QIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-A----VHNSLYF 432 (599)
Q Consensus 359 ~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~i 432 (599)
.++++ .|+++.+++.......++..++.++.|++.||+++|+ .+..+..+.+++..++.. . +......
T Consensus 280 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (485)
T TIGR00711 280 LYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK------LVTIGLILYAVGFYWRAFTFTPDTPFLAIAL 353 (485)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH------HHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 88877 5999999999999999999999999999999998774 455666666666555441 1 1223455
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 433 ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 433 ~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
..++.|++.+..++.......+.+|++++|++.|+.++...+|+. +++.+.+.+.++
T Consensus 354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~~i~g~~~~~ 410 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS-IGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 567789999888877777888889999999999999999999976 888889988876
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-26 Score=233.87 Aligned_cols=352 Identities=12% Similarity=-0.032 Sum_probs=233.9
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
++.|...+...+..+.... ...+.+..|.+.+++|.+..+.++..+.+.++..+ +++.|++.||+|||+++.++.++.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4444444444444433332 44455677889999999999999976777777655 889999999999999999999888
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++.+.+... ++++.+++.|+++|++.+...+.....+.|++|+ +|+++.++......+|..+++.+...+
T Consensus 89 ~~~~~~~~~~--------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 89 ILTCLAILLA--------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHH--------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887665443 6788999999999999998888888889999985 588889988877778888888777665
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 182 NGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
.+...|++.++...+..++..+.
T Consensus 161 ~~~~~w~~~~~~~~~~~~~~~~~--------------------------------------------------------- 183 (406)
T PRK15402 161 IHVLPWRGMFVLFAALAALSFFG--------------------------------------------------------- 183 (406)
T ss_pred HHccCccHHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 54322222211111110000000
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFT 341 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (599)
.....+++ +++ .+ ++.+.++...++++.+++|.++...+
T Consensus 184 --------~~~~~~~~-------------------~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (406)
T PRK15402 184 --------LWRAMPET-------------------AGR---VG-----------EKLSLKELGRDYKLVLKNRRFVAGAL 222 (406)
T ss_pred --------HHHhCCCC-------------------Ccc---cc-----------ccccHHHHHHHHHHHHcCcHHHHHHH
Confidence 00000000 000 00 00000011223567889999888777
Q ss_pred HHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL 420 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 420 (599)
..++.......+....|.++.+ .|+++.+.+.......++..+++++.|++.||+++|+ .+..+.++..++..
T Consensus 223 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~------~~~~~~~~~~~g~~ 296 (406)
T PRK15402 223 ALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS------LIRMGLWPMVAGLL 296 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence 6655544444444556766654 6898888888777777889999999999999998765 44555555555544
Q ss_pred HHHHh------hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 421 LIAFA------VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 421 ~~~~~------~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++... +..+..+..++.|++.+...+......... +++++|+..+..++...++.. +|+.+.+.+++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~-~g~~~~~~l~~~ 370 (406)
T PRK15402 297 LAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFT-VGIELSKHAYLG 370 (406)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHH-HHHHHHHhcccC
Confidence 43321 123345566777888887776665555433 448999999999998888865 889999998887
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=239.09 Aligned_cols=365 Identities=12% Similarity=0.010 Sum_probs=244.5
Q ss_pred HHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHH
Q 047229 47 FALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQ 125 (599)
Q Consensus 47 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 125 (599)
.....|.+.++++.++.+.+++.+...++.+. +++.|++.||+|||+++.++.++..++.+...... .. ..++++.
T Consensus 36 ~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 112 (417)
T PRK10489 36 LGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA--FL-PEPSLLA 112 (417)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH--Hc-CCCcHHH
Confidence 45567788888999999999988877787765 89999999999999999998887777755443221 11 2267888
Q ss_pred HHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Q 047229 126 MCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVF 204 (599)
Q Consensus 126 l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (599)
+++.|+++|++.+...+.....+.+++| ++|+++.++.....++|..+++.+++.+.+...+++.+.......++..
T Consensus 113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~-- 190 (417)
T PRK10489 113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL-- 190 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--
Confidence 8999999999988888888888999997 5699999999888889999988887766542222222221111111100
Q ss_pred hhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhch
Q 047229 205 IPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGN 284 (599)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (599)
++....| +.+
T Consensus 191 ----------------------------------------------------------~~~~~l~------~~~------ 200 (417)
T PRK10489 191 ----------------------------------------------------------LPLLRLP------ALP------ 200 (417)
T ss_pred ----------------------------------------------------------HHHHhCC------CCC------
Confidence 0000000 000
Q ss_pred hhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-
Q 047229 285 KLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA- 363 (599)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 363 (599)
+++. +++++.+.....++..+++|.++...+..++... ...+..++|.+.++
T Consensus 201 ------------~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~ 253 (417)
T PRK10489 201 ------------PPPQ--------------PREHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEV 253 (417)
T ss_pred ------------CCCc--------------ccccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc
Confidence 0000 0000000011124556777776655544433222 23345567888887
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhh
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVH-NSLYFASIIIGFCLG 442 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~g~~~g 442 (599)
.|.++.+.+.+.+...++..++.++.+++.||.++++ .+..+.++..++.+++...+. ....+..++.|++.+
T Consensus 254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (417)
T PRK10489 254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL------LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSA 327 (417)
T ss_pred cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch------HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999998753332 344455555555544443332 334456667788877
Q ss_pred hHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHH
Q 047229 443 AQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFA 522 (599)
Q Consensus 443 ~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 522 (599)
...+...+++.|..|++.+|++.|+.+....+|.. ++|.+.|.+.|.. ++..++...+++.++.
T Consensus 328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~l~G~l~~~~---------------g~~~~~~~~~~~~~~~ 391 (417)
T PRK10489 328 ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDA-IGAALLGGLGAMM---------------TPVASASASGFGLLII 391 (417)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHh-HHHHHHHHHHHHh---------------chhhHHHHHHHHHHHH
Confidence 77777788899999999999999999988888875 8999999999983 4667777766665555
Q ss_pred HHHHHHHHhhhcc
Q 047229 523 CIVSIILVLRTKN 535 (599)
Q Consensus 523 ~i~~~~~~~~~~~ 535 (599)
.++.....++.|+
T Consensus 392 ~~~~~~~~~~~~~ 404 (417)
T PRK10489 392 GVLLLLVLGELRR 404 (417)
T ss_pred HHHHHHhcccccc
Confidence 5555544444444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=248.49 Aligned_cols=386 Identities=14% Similarity=0.106 Sum_probs=245.8
Q ss_pred HHHHHhhHHHHHhHhCCC---HHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047229 44 SYMFALYSNDIKSSLGYD---QTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGA 119 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s---~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~ 119 (599)
.|.++...|.+.+|++++ ..+.+++.+.+.++.++ +++.|+++||+|||++++++.++..++.++.+++
T Consensus 105 ~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------- 177 (505)
T TIGR00898 105 EYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------- 177 (505)
T ss_pred EecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-------
Confidence 444446778899999999 89999988888888876 8899999999999999999999888887655433
Q ss_pred ChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047229 120 KPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPT 198 (599)
Q Consensus 120 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 198 (599)
++++.++++|++.|++.+...+....++.|++| ++|+++.++...+..+|.++++.+...+.+ |++.++...++.
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~ 253 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPT 253 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence 789999999999999999999999999999997 569999999988888888887776544432 555555555555
Q ss_pred HHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhh
Q 047229 199 IVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQEL 278 (599)
Q Consensus 199 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (599)
++..+..+++++.|+ +.. .+.+.
T Consensus 254 ~~~~~~~~~~~esp~---------~l~------------------------------------------------~~~~~ 276 (505)
T TIGR00898 254 FLFFLLSWFVPESPR---------WLI------------------------------------------------SQGRI 276 (505)
T ss_pred HHHHHHHHhcCCChH---------HHH------------------------------------------------HCCCH
Confidence 444444444443222 100 00000
Q ss_pred hhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchH
Q 047229 279 NIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMG 358 (599)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (599)
+ +..+.+.+..+.+..... ++..+ ...+++.++ +.++.++++++++|.++...+...+.........+.++
T Consensus 277 ~----~a~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (505)
T TIGR00898 277 E----EALKILQRIAKINGKKLP-AEVLS--LSLEKDLSS--SKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLV 347 (505)
T ss_pred H----HHHHHHHHHHHHcCCCCC-HHHHh--hhhhhhhhh--ccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 000000000000000000 00000 000000000 11123568889998887766554433322221112222
Q ss_pred HHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-h--hhHHHHHH
Q 047229 359 QIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-H--NSLYFASI 435 (599)
Q Consensus 359 ~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~i~~~ 435 (599)
.+....+.+ ......+.++..+++.++.+++.||+|||+ .+..+.++.+++.+++...+ . ....+..+
T Consensus 348 ~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 418 (505)
T TIGR00898 348 LDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRY------TMAASLLLAGVALLLLLFVPVDLYFLRTALAV 418 (505)
T ss_pred ccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 222333433 223345567788899999999999998875 45555555555544443322 2 23344455
Q ss_pred HHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHH
Q 047229 436 IIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTI 515 (599)
Q Consensus 436 l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 515 (599)
+.+++.+..++..+.+..|.+|++.|+++.|+.+....+|++ ++|.+.+ +.+. ++..++.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~-i~p~i~~-~~~~----------------~~~~~~~~~ 480 (505)
T TIGR00898 419 LGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSI-ISPFLVY-LGEK----------------WLFLPLVLF 480 (505)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHH-HHhHHHH-HHHH----------------HHhhHHHHH
Confidence 567777788888899999999999999999999999999976 8898887 4332 256677777
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 047229 516 SAATFFACIVSIILVLRTK 534 (599)
Q Consensus 516 ~~~~~i~~i~~~~~~~~~~ 534 (599)
+++.+++.++.+++ ++++
T Consensus 481 ~~~~~~~~~~~~~l-pet~ 498 (505)
T TIGR00898 481 GGLALLAGILTLFL-PETK 498 (505)
T ss_pred HHHHHHHHHHHHcC-cCCC
Confidence 77777776665544 3444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=233.09 Aligned_cols=332 Identities=13% Similarity=0.085 Sum_probs=231.0
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
..++++..|.+.+++|++.++.+++.+...++..+ +++.|++.||+|||+++.++.++..++.+.. . . ++
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-----~---~~ 86 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-----A---PG 86 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-----h---cc
Confidence 34567889999999999999999987777777765 8999999999999999999988877775433 1 2 56
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPI 202 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (599)
++.+++.|++.|+|.+...+.....+.+++|++|++++++...+.++|..+++.+...+.+....
T Consensus 87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~--------------- 151 (355)
T TIGR00896 87 TALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGG--------------- 151 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------
Confidence 78888999999999998887778888999998999999999998889988887776654432100
Q ss_pred HhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhh
Q 047229 203 VFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWK 282 (599)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (599)
+|+..|.... +..++ ......| +. + +
T Consensus 152 ---------------~w~~~f~~~~-------~~~~~-----------------------~~~~~~~------~~-~--~ 177 (355)
T TIGR00896 152 ---------------HWQQALAWWA-------LPALL-----------------------ALLAWIP------QV-R--R 177 (355)
T ss_pred ---------------hHHHHHHHHH-------HHHHH-----------------------HHHHHhh------hh-c--c
Confidence 0111111000 00000 0000000 00 0 0
Q ss_pred chhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHH
Q 047229 283 GNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGK 362 (599)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (599)
+ +++ +++. .....++.+|+|.+|.+.+..++..........++|.+++
T Consensus 178 -~------------~~~----------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 225 (355)
T TIGR00896 178 -R------------VAA----------------NQTT---TRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI 225 (355)
T ss_pred -c------------cCC----------------CCCC---CCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 0000 0012356788888887776666655556666778899998
Q ss_pred HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 047229 363 ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCLG 442 (599)
Q Consensus 363 ~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~g 442 (599)
+.|++..+.+...+...++..+++++.|++.||+++|+ ..+..+..+.+++.+.+.............+.|++.|
T Consensus 226 ~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g 300 (355)
T TIGR00896 226 SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQR-----GIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQG 300 (355)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 88999999999999999999999999999999995442 2344444555555444433222222234567899999
Q ss_pred hHHHHHHHHHHHhhC-CCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 443 AQLSLLVTIISELFG-LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 443 ~~~~~~~~~~~e~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
..++.....+.+..+ +++++...|+.+....++.. ++|.+.|.+.|..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~gp~~~G~l~~~~ 349 (355)
T TIGR00896 301 GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAA-LGPLFVGVLHDIS 349 (355)
T ss_pred hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 988887777665554 45678888888877778765 8999999999985
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=229.16 Aligned_cols=326 Identities=13% Similarity=0.055 Sum_probs=225.4
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
...+.+..|.+.+++|.++++.+++.+.+.++... +++.|++.||+|||+++.++.++..++.+.+... ++
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 92 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--------NN 92 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------cc
Confidence 45566778999999999999999987777777765 8999999999999999999999888887766443 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHH-HHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLL-ACLPTIV 200 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~ 200 (599)
++.+++.|+++|++.+...+....++.|++| ++|+++.++......+|..+++.+.+.+.+...|++.++. +....+.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999997 5699999999999999999988887765543222222111 1111100
Q ss_pred HHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 047229 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNI 280 (599)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (599)
.++..+ ..++.+
T Consensus 173 ~~~~~~------------------------------------------------------------------~~~~~~-- 184 (385)
T TIGR00710 173 SALIFF------------------------------------------------------------------ILPETL-- 184 (385)
T ss_pred HHHHHH------------------------------------------------------------------hCCCCC--
Confidence 000000 000000
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
++ + ++++.+.....+++.+++++++...+...+..........+.|.+
T Consensus 185 ----------------~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (385)
T TIGR00710 185 ----------------PY-E---------------ARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFV 232 (385)
T ss_pred ----------------CC-c---------------ccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHH
Confidence 00 0 000000111235677888888877766555555455555666777
Q ss_pred HH-HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-----hh-hhHHHH
Q 047229 361 GK-ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-----VH-NSLYFA 433 (599)
Q Consensus 361 ~~-~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~i~ 433 (599)
++ +.|+++.+.+.......++..+++++.|++.||+++|+ .+..+..+..++.+++... +. ......
T Consensus 233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (385)
T TIGR00710 233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS------LLRMGLILFAVSAVLLEITAILGLGSWAMIIGP 306 (385)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 76 47999999999999999999999999999999998775 3333444444443332221 11 123344
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHH
Q 047229 434 SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAG 485 (599)
Q Consensus 434 ~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g 485 (599)
..+.|++.+...+.......|..| ++++++.++.+.....++.+.+|. .+
T Consensus 307 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~ 356 (385)
T TIGR00710 307 MMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HH
Confidence 566788888888888888888886 678999999887766555545554 44
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=226.78 Aligned_cols=385 Identities=11% Similarity=0.051 Sum_probs=247.5
Q ss_pred HHHHHhhhhHH-HHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 047229 35 LLIMSVNGSSY-MFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLS 112 (599)
Q Consensus 35 ~~~~~~~g~~~-~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~ 112 (599)
+...+..|..+ ..+++.|.+++++|++.++.+++.+...++..+ +++.|++.||+|||+++.++.++++++.+++..+
T Consensus 9 ~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~ 88 (410)
T TIGR00885 9 TSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA 88 (410)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 34444556644 346888999999999999999988877777765 8999999999999999999999999997665332
Q ss_pred HhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChH--HH
Q 047229 113 VSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTK--AL 189 (599)
Q Consensus 113 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~--~~ 189 (599)
.. .++++.+++.|++.|+|.|...+....++.+..| ++|++.+++.+...++|..+++.+...+...... ..
T Consensus 89 --~~---~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~ 163 (410)
T TIGR00885 89 --AE---IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ 163 (410)
T ss_pred --Hh---hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 11 2579999999999999999999999999988887 5699999999999999999998887766422100 00
Q ss_pred HHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcc
Q 047229 190 ILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIP 269 (599)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (599)
.......+..... ....+..+|+..|. ..++..++..+
T Consensus 164 ~~~~~~~~~~~~~--------~~~~~~~~w~~~fl-------~~a~~~~~~~~--------------------------- 201 (410)
T TIGR00885 164 DVLDKLSPEELSA--------IKHSDLASVQTPYM-------IIGAVVLAVAL--------------------------- 201 (410)
T ss_pred hhhhhcCHHHHHH--------HHHHHHHHHHHHHH-------HHHHHHHHHHH---------------------------
Confidence 0000000000000 00000011122221 11111110000
Q ss_pred hhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcc
Q 047229 270 LAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGG 349 (599)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 349 (599)
.....+. |+.+. + + .+++ ....+.++++|+|.++...+..++..+.
T Consensus 202 -~~~~~~~-------------------p~~~~-~-~---------~~~~---~~~~~~~~~~~~~~~~~~~l~~f~yvg~ 247 (410)
T TIGR00885 202 -LIMLTKM-------------------PALNH-S-D---------AKQI---SFSASLSRLARIRHYREGVIAQFFYVGV 247 (410)
T ss_pred -HHHHhcC-------------------CCCCc-c-c---------cccc---cchhhHHHHHhChhHHHHHHHHHHHHHH
Confidence 0000000 00000 0 0 0000 0111345788999998888888887777
Q ss_pred hhhhhcchHHHHHHc--CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhh
Q 047229 350 ALAAIDNMGQIGKAL--GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVH 427 (599)
Q Consensus 350 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (599)
......+++.+.++. +.+...++...+.......+||++++++.||+++|+ .+.++.++.++..++....+.
T Consensus 248 e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~------~l~i~~~~~~~~~ll~~~~~~ 321 (410)
T TIGR00885 248 QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK------VLMAYAIIGMALCLGSIFAGG 321 (410)
T ss_pred HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHcCC
Confidence 777777788888765 344444455667777888999999999999997765 455555555555544444444
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcch
Q 047229 428 NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARC 507 (599)
Q Consensus 428 ~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 507 (599)
....+...+.|++.+..+|..++...+..+++......++... .+|+. +.|++.|.+.|..+... .++
T Consensus 322 ~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga-~~p~l~G~~~d~~~~~~---------~~~ 389 (410)
T TIGR00885 322 HVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGG-IVPPLQGFIIDMKEIAA---------APA 389 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--Hhccc-hHHHHHHHHHHHhcccc---------cCc
Confidence 3445677788999999999999999999986665445554443 27766 78999999999631100 124
Q ss_pred HHHHHHHHHHH
Q 047229 508 YRVAFVTISAA 518 (599)
Q Consensus 508 ~~~~f~~~~~~ 518 (599)
++.+|++...+
T Consensus 390 ~~~~~~~~~~~ 400 (410)
T TIGR00885 390 VNTSFILPLLC 400 (410)
T ss_pred cchHHHHHHHH
Confidence 67777764443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=231.14 Aligned_cols=340 Identities=12% Similarity=0.042 Sum_probs=239.8
Q ss_pred HHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHH
Q 047229 47 FALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQ 125 (599)
Q Consensus 47 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 125 (599)
.....|.+..+++.+..+.+++.+...++..+ +++.|++.||+|||+++.++.++..++.++..+... . ...+++.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ 94 (365)
T TIGR00900 18 TQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL--L-GGLNIWQ 94 (365)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH--c-CCCcHHH
Confidence 34556778888999999999987777777755 899999999999999999998888777665544311 1 1137899
Q ss_pred HHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Q 047229 126 MCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVF 204 (599)
Q Consensus 126 l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (599)
+++.|+++|++.+...+....++.|++| ++|+++.++...+..+|..+++.+.+.+.+...|++.++...+..++..+.
T Consensus 95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 569999999999999999999888777654333332222221111111100
Q ss_pred hhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhch
Q 047229 205 IPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGN 284 (599)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (599)
.+.+ +.+++
T Consensus 175 ~~~~------------------------------------------------------------------~~~~~----- 183 (365)
T TIGR00900 175 IVSV------------------------------------------------------------------RIPEL----- 183 (365)
T ss_pred HHhc------------------------------------------------------------------ccccC-----
Confidence 0000 00000
Q ss_pred hhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhh-cchHHHHHH
Q 047229 285 KLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAI-DNMGQIGKA 363 (599)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 363 (599)
+++++++.+ ++..++....+++.+|+|.++...+..++......... ...|.+.++
T Consensus 184 ------------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T TIGR00900 184 ------------AASEIQALS-----------NAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSK 240 (365)
T ss_pred ------------CCccccccc-----------hhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 000000000 00000011234667888888877766666555554444 667777776
Q ss_pred -cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHH
Q 047229 364 -LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV--HNSLYFASIIIGFC 440 (599)
Q Consensus 364 -~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l~g~~ 440 (599)
+|.++.+.+.......++..+++++.+++.||.++|+ .+..+..+..++.......+ ....++..++.|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 314 (365)
T TIGR00900 241 YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA------LMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG 314 (365)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999987664 44444444444444443332 33455667788999
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
.+...+....+..|.+|+++++++.|+.+....++.. ++|.+.|.+.|.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~g~~~~g~l~~~ 363 (365)
T TIGR00900 315 YGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP-LGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9998899999999999999999999999999999876 899999999886
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=223.73 Aligned_cols=344 Identities=11% Similarity=0.101 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHH
Q 047229 28 WFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGF 106 (599)
Q Consensus 28 w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~ 106 (599)
++.+...++..+. ....++...+.+.+++|++..+.+++.+...+.. +.+++.|++.||+|||+++.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~ 90 (400)
T PRK11646 13 YFLLIDNMLVVLG--FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGF 90 (400)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHH
Confidence 5555444444332 2334566666788999999999999666555555 558999999999999999999999998887
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCC
Q 047229 107 FMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDN 185 (599)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~ 185 (599)
+.+... ++++.+++.|+++|++.+...+....++.+++| ++|++++|+......+|..+++.+.+.+.+ .
T Consensus 91 ~~~~~~--------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-~ 161 (400)
T PRK11646 91 ATMAIA--------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-Y 161 (400)
T ss_pred HHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 765433 678889999999999998888888888999997 679999999999999999999888877652 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHH
Q 047229 186 TKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLS 265 (599)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (599)
.+++.+.......++..+ ...
T Consensus 162 g~~~~f~~~~~~~~~~~i-----------------------------------------------------------~~~ 182 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAA-----------------------------------------------------------FNA 182 (400)
T ss_pred hHHHHHHHHHHHHHHHHH-----------------------------------------------------------HHH
Confidence 222211111111000000 000
Q ss_pred hhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHh
Q 047229 266 LFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTC 345 (599)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 345 (599)
.. .++. + ++ ..+ ++...++++.+++++++...+..+.
T Consensus 183 ------~~-~~~~---~--------------~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (400)
T PRK11646 183 ------WL-LPAY---K--------------LS----------------TVR---TPVREGMTRVLRDKRFVTYVLTLTG 219 (400)
T ss_pred ------Hh-CCcc---c--------------cc----------------ccc---hhhHHHHHHHHcCchHHHHHHHHHH
Confidence 00 0000 0 00 000 0011245678888888765554433
Q ss_pred hhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhh-hhhhccCCchHHHHHHHHHHHHHHHHHHH
Q 047229 346 SIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEI-FLAKYKVPRPLLLTLVILFSCIGYLLIAF 424 (599)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (599)
..........++|.+.++.+.++.+.+...+..++....+....+++.|| ++.++ .+..+..+.+++.+++..
T Consensus 220 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~~~~~~~~~~~~~~l~~ 293 (400)
T PRK11646 220 YYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH------RLMAGLLIMSLSMFPIGM 293 (400)
T ss_pred HHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH------HHHHHHHHHHHHHHHHHH
Confidence 32222223456788888876677778877777776665555444555554 43221 234445555555544443
Q ss_pred hh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 425 AV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 425 ~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
.+ .....+...+.+++.+...+....++.+..|++++|++.|+.+....+|.. ++|.+.|.+.|..
T Consensus 294 ~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-ig~~l~G~l~~~~ 360 (400)
T PRK11646 294 VSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGA-IGYIGGGWLFDLG 360 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHH-hcccchHHHHHHH
Confidence 33 233444456677788877788889999999999999999999999999876 9999999999984
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-25 Score=225.74 Aligned_cols=346 Identities=14% Similarity=0.058 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHH
Q 047229 29 FMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFF 107 (599)
Q Consensus 29 ~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~ 107 (599)
.++..+++..+.......+.+..|++.+++|.++++.+++.+...++..+ +++.|++.||+|||+++.++.++..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 86 (401)
T PRK11043 7 FLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHH
Confidence 34444444443333455566667889999999999999987777777755 89999999999999999999988888766
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCCCh
Q 047229 108 MIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNT 186 (599)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~ 186 (599)
.+... ++++.+++.|+++|++.+...+.....+.+++|+ ++++..+......++|..+++.+.+.+.+...
T Consensus 87 ~~~~~--------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 87 GMLWV--------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred HHHHh--------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55433 6789999999999999888777777888999975 57888888888788888888888777655333
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHh
Q 047229 187 KALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSL 266 (599)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (599)
|++.+.......++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 177 (401)
T PRK11043 159 WQAIFATLFAITLLLILPT------------------------------------------------------------- 177 (401)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 3332221111111100000
Q ss_pred hcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhh
Q 047229 267 FIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCS 346 (599)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 346 (599)
...++++ ++ + + +++...++++.+++++++...+...+.
T Consensus 178 -----~~~~~~~------------------~~----------------~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (401)
T PRK11043 178 -----LRLKPSK------------------KA----------------R-K--QSQDALTFKQLLKSKTYLGNVLIFAAC 215 (401)
T ss_pred -----HHcCCCC------------------Cc----------------c-c--cchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 0000000 00 0 0 001123467788888887665555444
Q ss_pred hcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH--
Q 047229 347 IGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-- 424 (599)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-- 424 (599)
......+..+.|.+.++.|+++.+.+.......++..+|+++.+++.||+++|+.. ........+..+...+...
T Consensus 216 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 292 (401)
T PRK11043 216 SAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL---PWLLVLFAVSVIAIWLASLLS 292 (401)
T ss_pred HHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 44445556677888888899988888888888888999999999999999876411 1111112222222222211
Q ss_pred h-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 425 A-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 425 ~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
. +.....+...+.+++.+..++.......+..| +++|++.|+.++....++. .++.+.|.+.|.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~-~~~~~~g~l~~~ 357 (401)
T PRK11043 293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCF-LASLLVSALIST 357 (401)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHH-HHHHHHHHccCC
Confidence 1 12233445566788888888887777777776 6899999999987766655 677777777664
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=233.37 Aligned_cols=370 Identities=12% Similarity=0.088 Sum_probs=262.6
Q ss_pred HhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 047229 55 KSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIG 133 (599)
Q Consensus 55 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 133 (599)
..++++|.++.+++.+....|++. +++.|+++||||.|+++..+.++.++++++.-.+.. .+++.+++.|++|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~------~~~~~~~~~R~lq 138 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS------IGFYLLLVLRFLQ 138 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH------hcchhhHHHHHHh
Confidence 347899999999988888899977 789999999999999999999999999888766633 4566788999999
Q ss_pred hccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHhhhcccc
Q 047229 134 ANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD--NTKALILLLACLPTIVPIVFIPTIRI 210 (599)
Q Consensus 134 G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (599)
|++.|..+|+...+..+|.| ++|++..++..++..+|.++.-++.+.+.+. +|...+++.+...++..++..++...
T Consensus 139 Gl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 139 GLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999997 6899999999999999999999998887654 22233333333333322222222221
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhh
Q 047229 211 IKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALD 290 (599)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 290 (599)
.|. +.+.-
T Consensus 219 ~P~------------------------------------------------------------------~h~~i------ 226 (466)
T KOG2532|consen 219 SPS------------------------------------------------------------------KHPNI------ 226 (466)
T ss_pred Ccc------------------------------------------------------------------cCCCC------
Confidence 111 10000
Q ss_pred hhhccCCCCccccccccchhhhcc-cCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCC
Q 047229 291 AHYDQAIPALNVKTNFLTLFSLKN-VSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPT 368 (599)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 368 (599)
.++|.+.-+++ .++..++..+.+++++++++.+|.+++..++.....+.+..+.|.|+++ +|++.
T Consensus 227 -------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v 293 (466)
T KOG2532|consen 227 -------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDV 293 (466)
T ss_pred -------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCh
Confidence 00000000000 0111111145678999999999999999999998889999999999988 69999
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccC----CchHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHH-h
Q 047229 369 HSIASFISLISIWNFLGRIVAGFASEIFLAKYKV----PRPLLLTLVILFSCIGYLLIAFAV--HNSLYFASIIIGFC-L 441 (599)
Q Consensus 369 ~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l~g~~-~ 441 (599)
.+.|++.++..+.+.+..+++|.++||+.+| .. .|+..-.++....++.++.+...+ .....+..+.+..+ .
T Consensus 294 ~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~ 372 (466)
T KOG2532|consen 294 RETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS 372 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc
Confidence 9999999999999999999999999999775 32 344555566666666655554433 22122222222222 2
Q ss_pred hhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHH
Q 047229 442 GAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 442 g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 521 (599)
|...+....-..+. .+++.+...|+.+....+.++ ++|.+.|.+.... . ...|+..|.+.+++.++
T Consensus 373 g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~-~~P~~vg~~~~~~-t-----------~~eW~~VF~i~a~i~~~ 438 (466)
T KOG2532|consen 373 GFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGF-IAPLLVGIIVTDN-T-----------REEWRIVFLIAAGILIV 438 (466)
T ss_pred ccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHH-HHHHheeeEeCCC-C-----------HHHHHHHHHHHHHHHHH
Confidence 23223333333333 468999999999999999976 8999999887421 1 13599999999998888
Q ss_pred HHHHHHHHH
Q 047229 522 ACIVSIILV 530 (599)
Q Consensus 522 ~~i~~~~~~ 530 (599)
+.++..++.
T Consensus 439 ~~i~f~~f~ 447 (466)
T KOG2532|consen 439 GNIIFLFFG 447 (466)
T ss_pred hchheeEee
Confidence 886555543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=223.24 Aligned_cols=354 Identities=12% Similarity=0.072 Sum_probs=229.3
Q ss_pred HHHHhhHHHHHhHhCCCHHHH-----HHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCC
Q 047229 45 YMFALYSNDIKSSLGYDQTTL-----NLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFG 118 (599)
Q Consensus 45 ~~~~~~~~~l~~~~~~s~~~~-----~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~ 118 (599)
+.+..+.|.+.+++|++..+. +++.+...+.. +.+++.|++.||+|||+++..+.++..++.+++...
T Consensus 31 ~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------ 104 (408)
T PRK09874 31 SLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA------ 104 (408)
T ss_pred HHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH------
Confidence 345667888889999886653 66555555555 458999999999999999999988888876655333
Q ss_pred CChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 047229 119 AKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLP 197 (599)
Q Consensus 119 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~ 197 (599)
++++.+++.|++.|++.+ ..+.....+.+++| ++|+++.++...+..+|..+++++.+.+.+...|++.++.....
T Consensus 105 --~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 181 (408)
T PRK09874 105 --QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV 181 (408)
T ss_pred --hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 678999999999999865 45666777888887 56999999999988899888888877655432222211111111
Q ss_pred HHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhh
Q 047229 198 TIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQE 277 (599)
Q Consensus 198 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (599)
.++..+ . .....+++
T Consensus 182 ~~~~~~-----------------------------------------------------------~------~~~~~~~~ 196 (408)
T PRK09874 182 LFLCFL-----------------------------------------------------------V------TLFCIREN 196 (408)
T ss_pred HHHHHH-----------------------------------------------------------H------HHHHhccC
Confidence 000000 0 00000100
Q ss_pred hhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHH-HHhhhcchhhhhcc
Q 047229 278 LNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTA-TTCSIGGALAAIDN 356 (599)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 356 (599)
.+ +.+ + + ++....+..+.+++++++...+. .++..........+
T Consensus 197 ~~-----------------~~~-----~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T PRK09874 197 FQ-----------------PVS-----K-----------K--EMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPI 241 (408)
T ss_pred cc-----------------ccc-----c-----------h--hhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 0 0 00000122445666666543322 22222222223344
Q ss_pred hHHHHHHcCCCCcc----hhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHH
Q 047229 357 MGQIGKALGYPTHS----IASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLY 431 (599)
Q Consensus 357 ~~~~~~~~g~~~~~----~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 431 (599)
++.+..+.+.+..+ .+.+..+.+++..++++..|++.||+++|+ .+..+..+..++.+..... +....+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T PRK09874 242 LTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK------ILITALIFSVLLLIPMSFVQTPLQLG 315 (408)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------hHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 56666664333222 344456667888899999999999998775 3444444444444443332 334455
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVA 511 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (599)
+..++.|++.+...+.......+..|++++|+.+++.+....+|.. ++|.+.|.+.+. .+|+..
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~gp~~~G~l~~~---------------~g~~~~ 379 (408)
T PRK09874 316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNV-TGPLMGAAISAN---------------YGFRAV 379 (408)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHH-hhHHHHHHHHhh---------------cchhHH
Confidence 5667789999998888888889999999999999999988888876 899999999887 459999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047229 512 FVTISAATFFACIVSIIL 529 (599)
Q Consensus 512 f~~~~~~~~i~~i~~~~~ 529 (599)
|++.+++.+++.+...+.
T Consensus 380 f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 380 FLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988888777665544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=206.05 Aligned_cols=245 Identities=42% Similarity=0.793 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhcccCChHHHHHHHHHHHHHH
Q 047229 27 RWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSIMNFFGF 106 (599)
Q Consensus 27 ~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~ 106 (599)
||..+.++++++.+.|..|.|+.+.|++++.+|+|.+|.+.++++..+|..++++.|.+.|++|+|.++++|.+...+|+
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCCh
Q 047229 107 FMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNT 186 (599)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~ 186 (599)
..+++...+.. ..+++|.++++.++.|.|.+..++++.....++||++||++.|+..+..|+++.+...+...+++++.
T Consensus 81 ~~~~l~~~~~i-~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~ 159 (250)
T PF06813_consen 81 GLLWLAVSGRI-PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP 159 (250)
T ss_pred HHHHHHHhCcc-CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCCh
Confidence 99999999887 55689999999999999999988999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccc----cCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHH
Q 047229 187 KALILLLACLPTIVPIVFIPTIRIIKI----ARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVV 262 (599)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (599)
..+++++++.|.++.++.++++|..|+ ++++++++.|.....+.+.++.++++..+.++..+.++..+.....++
T Consensus 160 ~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il- 238 (250)
T PF06813_consen 160 SSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVIL- 238 (250)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHH-
Confidence 999999999999999999999998865 345667888888888888999999999999999999888888888777
Q ss_pred HHHhhcchhhh
Q 047229 263 VLSLFIPLAAV 273 (599)
Q Consensus 263 ~~~l~~~~~~~ 273 (599)
++++..|+..+
T Consensus 239 ~llL~~Pl~i~ 249 (250)
T PF06813_consen 239 LLLLLLPLAIP 249 (250)
T ss_pred HHHHHhhhhcc
Confidence 67777787643
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=218.44 Aligned_cols=345 Identities=13% Similarity=0.090 Sum_probs=223.2
Q ss_pred hhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHH-HHHHHHHHHHHHHHHHhccCCCChhHHHH
Q 047229 49 LYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLS-GSIMNFFGFFMIWLSVSHRFGAKPHVWQM 126 (599)
Q Consensus 49 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~i-g~~~~~~g~~~~~~~~~~~~~~~~~~~~l 126 (599)
.+.+.+++++|.++++.+++.+.+.+.. +.+++.|++.||+||||.+++ +.++..++.++++.+ ++++.+
T Consensus 19 ~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~l 90 (375)
T TIGR00899 19 TLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN--------RNYFLL 90 (375)
T ss_pred HHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--------chHHHH
Confidence 3333578899999999999766665554 569999999999999987655 444444454443222 678888
Q ss_pred HHHHHHHhccccccchhHHHHHhhcCCC-Cccch--hHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVV--IGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPI- 202 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~--~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (599)
++.|+++|.+.+...|....+..++.|+ +|++. .+....+.++|..+++++.+.+.+...|++.++....+.++..
T Consensus 91 ~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~ 170 (375)
T TIGR00899 91 LVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGV 170 (375)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 8999999888887777777777888764 35543 5777777889999988887776553333332222221111111
Q ss_pred HhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhh
Q 047229 203 VFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWK 282 (599)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (599)
+..+.++ +.
T Consensus 171 ~~~~~~~------------------------------------------------------------------~~----- 179 (375)
T TIGR00899 171 LVWLFLP------------------------------------------------------------------SY----- 179 (375)
T ss_pred HHHHhCC------------------------------------------------------------------Cc-----
Confidence 0000000 00
Q ss_pred chhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHH
Q 047229 283 GNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGK 362 (599)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (599)
|++. ++ ++ ...+.++.+++++++.+....++..........+++.+.+
T Consensus 180 --------------~~~~---~~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (375)
T TIGR00899 180 --------------PRGA---PG-----------AL----TRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLII 227 (375)
T ss_pred --------------ccCc---cc-----------cc----CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0000 00 00 0011234566777766555444433333334455666664
Q ss_pred -HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Q 047229 363 -ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIGFC 440 (599)
Q Consensus 363 -~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~ 440 (599)
+.|.++.+.+.......+...++.++.|++.||+++|+ .+..+.+...+....+... +....++..++.|++
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 301 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR------LMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF 301 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999888888877777778889999999999998775 3333333333333333222 233344555667888
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHH
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATF 520 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 520 (599)
.+...+....+..|..|+ +++++.++.+....+|.. ++|.+.|.+.|. .+|+..|++.+++.+
T Consensus 302 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~-~g~~~~g~~~~~---------------~g~~~~~~~~~~~~~ 364 (375)
T TIGR00899 302 IGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWI-IAGSVGGILAER---------------WSYHAVYWFAIVMLI 364 (375)
T ss_pred HHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHh---------------ccchhHHHHHHHHHH
Confidence 888888888888998875 567999999988888875 899999999887 358888988888777
Q ss_pred HHHHHHH
Q 047229 521 FACIVSI 527 (599)
Q Consensus 521 i~~i~~~ 527 (599)
++.++..
T Consensus 365 ~~~~~~~ 371 (375)
T TIGR00899 365 VALFCLL 371 (375)
T ss_pred HHHHHHh
Confidence 7766554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=222.71 Aligned_cols=348 Identities=11% Similarity=-0.006 Sum_probs=226.8
Q ss_pred HHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHH
Q 047229 46 MFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVW 124 (599)
Q Consensus 46 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (599)
..+.+.+.+++++|++.++.+++.+...+.. +.+++.|++.||+|||+++.++.++..++.+.+.+. ++++
T Consensus 26 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--------~~~~ 97 (395)
T PRK10054 26 TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--------NNVT 97 (395)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--------hHHH
Confidence 3455556778899999999999766655555 459999999999999999999998888876655433 6788
Q ss_pred HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 047229 125 QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIV 203 (599)
Q Consensus 125 ~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (599)
.++++|++.|.+.+...+.......|.+| ++|+++.|+.....++|..+++++...+.+.+ +
T Consensus 98 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g-~---------------- 160 (395)
T PRK10054 98 LVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQS-I---------------- 160 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c----------------
Confidence 88888888888777777777788888886 56999999999999999999988877654321 1
Q ss_pred hhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhc
Q 047229 204 FIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKG 283 (599)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (599)
+..|...... ..+. + +......++.+
T Consensus 161 ----------------~~~f~~~~~~-------~~i~----------------------~----i~~~~~~~~~~----- 186 (395)
T PRK10054 161 ----------------NLPFWLAAIC-------SAFP----------------------L----VFIQIWVQRSE----- 186 (395)
T ss_pred ----------------CcHHHHHHHH-------HHHH----------------------H----HHHHHHHhccc-----
Confidence 1112100000 0000 0 00000000000
Q ss_pred hhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH
Q 047229 284 NKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
++++ + +++ +..+.++.+|+|++|...+..++.......+..+.+.+...
T Consensus 187 -------------~~~~---~-----------~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (395)
T PRK10054 187 -------------KAIA---T-----------ETG----SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMV 235 (395)
T ss_pred -------------cccc---c-----------chh----hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0000 0 000 01123567888988877766665544444444455555533
Q ss_pred ---cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHH
Q 047229 364 ---LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA--VHNSLYFASIIIG 438 (599)
Q Consensus 364 ---~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~l~g 438 (599)
.+.+....+.......+.....+...|++.||.++|+ .+..+..+..++...+... +.....+...+.+
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (395)
T PRK10054 236 VADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP------LMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFT 309 (395)
T ss_pred hcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 3455555566666666666677778888888886654 4455555555555444332 2223445667778
Q ss_pred HHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHH
Q 047229 439 FCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAA 518 (599)
Q Consensus 439 ~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 518 (599)
++.+...+.....+.+..|++.+++.++..+ ...+|.. +||.++|.++|.. ++...|.+.+++
T Consensus 310 ~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~-~Gp~~~G~l~~~~---------------g~~~~~~~~~~~ 372 (395)
T PRK10054 310 VGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAA-INPLVSGVILTTL---------------PPWSLFVILALA 372 (395)
T ss_pred HHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHH-HHHHHHHHHHHHc---------------ChhhHHHHHHHH
Confidence 8888777888889999999999999988765 4556765 9999999999983 467777766555
Q ss_pred HHHHHHHH
Q 047229 519 TFFACIVS 526 (599)
Q Consensus 519 ~~i~~i~~ 526 (599)
..++.++.
T Consensus 373 ~~~~~~~~ 380 (395)
T PRK10054 373 IVAAWLLM 380 (395)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-23 Score=216.01 Aligned_cols=325 Identities=12% Similarity=0.069 Sum_probs=206.5
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
...+....|.+.+++|.+.++.+++.+.+.++... +++.|++.||+|||+.++++.++..++.+.+... ++
T Consensus 19 ~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--------~~ 90 (392)
T PRK10473 19 IDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--------ET 90 (392)
T ss_pred HHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh--------Cc
Confidence 44455788999999999999999987777777765 8999999999999999999999888887665433 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHH-HHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALI-LLLACLPTIV 200 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~ 200 (599)
++.+++.|+++|++.+..++....++.+++| ++|+++.++......+|..+++.+...+.+...|++. +..+....+.
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV 170 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence 8888999999999999988888999999997 6799999999988888888887776665443222222 1111111111
Q ss_pred HHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 047229 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNI 280 (599)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (599)
.++....+ ++++
T Consensus 171 ~~~~~~~~------------------------------------------------------------------~~~~-- 182 (392)
T PRK10473 171 LLLSLFIL------------------------------------------------------------------KETR-- 182 (392)
T ss_pred HHHHHHHc------------------------------------------------------------------CCCC--
Confidence 11000000 0000
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
+++ + ++ ++......++.++++.++...+...+.......+..+.+.+
T Consensus 183 ----------------~~~---~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (392)
T PRK10473 183 ----------------PAR---A-----------PA---ASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVL 229 (392)
T ss_pred ----------------Ccc---c-----------CC---ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 000 0 00 00011233567788887765554444333333344455655
Q ss_pred HH-HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH
Q 047229 361 GK-ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIG 438 (599)
Q Consensus 361 ~~-~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g 438 (599)
.+ +.|+++.+.+...+..+++..+++++.+++.||+++|+ .+..+..+..++.+.+.... .....+...+.+
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT------LMLTSQVLFLAAGITLALSPSHAVSLFGITLIC 303 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 46999888888889999999999999999999998775 44555555555544443332 222333344444
Q ss_pred HHhhhHHHHHHHHHHHhhCCCcc-cchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 439 FCLGAQLSLLVTIISELFGLKHY-STLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 439 ~~~g~~~~~~~~~~~e~~~~~~~-g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
.+.+..++. ....+..|.+++ |.+.++. .++.. +++.+.+.+.+.
T Consensus 304 ~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~----~~~~~-~g~~~~~~l~~~ 349 (392)
T PRK10473 304 AGFSVGFGV--AMSQALGPFSLRAGVASSTL----GIAQV-CGSSLWIWLAAV 349 (392)
T ss_pred HHHHHHhHH--HHHHHhccCcccccHHHHHH----HHHHH-HHHHHHHHHHHH
Confidence 444443333 233444554333 3343333 34432 555567777766
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-24 Score=200.52 Aligned_cols=368 Identities=14% Similarity=0.105 Sum_probs=269.6
Q ss_pred hHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHH
Q 047229 27 RWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFF 104 (599)
Q Consensus 27 ~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~ 104 (599)
.|+.+...+++.+..-. ..+.+++.+++.+|+|+|.++.+.+++...+.. .++++..++..|+|.++.+..++++..+
T Consensus 10 ~~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~ 89 (395)
T COG2807 10 PLLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAA 89 (395)
T ss_pred chHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 36655555555555544 677899999999999999999999988888777 5599999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCC
Q 047229 105 GFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD 184 (599)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~ 184 (599)
|.++= .. .+.+.++.+-.+.|.|.+..+...+..+.+.||++-+..+|++....++|+.+++.+.-.+.+.
T Consensus 90 G~~iR-----~~----~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~ 160 (395)
T COG2807 90 GILIR-----SL----GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQH 160 (395)
T ss_pred HHHHH-----hc----ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh
Confidence 97643 11 2466788889999999999999999999999999999999999998888888876665544332
Q ss_pred C--hHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHH
Q 047229 185 N--TKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVV 262 (599)
Q Consensus 185 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (599)
. |+.-..+++..+.+..+
T Consensus 161 ~~gW~~aL~~WAl~allAl~------------------------------------------------------------ 180 (395)
T COG2807 161 SGGWRGALGFWALLALLALL------------------------------------------------------------ 180 (395)
T ss_pred hccHHHHHHHHHHHHHHHHH------------------------------------------------------------
Confidence 2 22222222222211111
Q ss_pred HHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHH
Q 047229 263 VLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTA 342 (599)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 342 (599)
+.+| .. .+ .+. + ..+. +..+-.+++|+|.-|.+.+.
T Consensus 181 ---~WlP----q~--~r-~~~-------------~-----------------~~~~----~~~~~~~vw~~~~aW~vtLf 216 (395)
T COG2807 181 ---IWLP----QA--LR-EQA-------------A-----------------SIAT----KLVSVRKVWRSPLAWQVTLF 216 (395)
T ss_pred ---HHhh----hc--cc-ccc-------------c-----------------cccc----ccccccccccCchhHHHHHH
Confidence 0011 00 00 000 0 0000 11112568999999999999
Q ss_pred HHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH
Q 047229 343 TTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLI 422 (599)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 422 (599)
+.++....+..+.|+|.++.|.|+|+++++.+.++..+.+....+....+.+|... ++.......+.+.++++.+
T Consensus 217 mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n-----~r~~~~~~~~~~l~G~~G~ 291 (395)
T COG2807 217 MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN-----QRPLVVLALLLMLVGLVGL 291 (395)
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998543 3345555556666666555
Q ss_pred HHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhC-CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCcc
Q 047229 423 AFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFG-LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLN 501 (599)
Q Consensus 423 ~~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~ 501 (599)
...+....+...+++|++.|+.++....++..... ++..+...|+.+..+.+-+. +||++.|.+.|.
T Consensus 292 ~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa-~GP~l~G~lhDa----------- 359 (395)
T COG2807 292 LLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAA-FGPWLFGFLHDA----------- 359 (395)
T ss_pred HHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHh-hhhhhHhHHHHh-----------
Confidence 44443344444789999999999998888877664 34556666777666666555 899999999999
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHH
Q 047229 502 CIGARCYRVAFVTISAATFFACIVSI 527 (599)
Q Consensus 502 ~~~~~~~~~~f~~~~~~~~i~~i~~~ 527 (599)
+++|+..++....+.++..+.-+
T Consensus 360 ---~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 360 ---TGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred ---cCChHHHHHHHHHHHHHHHHHHh
Confidence 46899888887766555444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=216.90 Aligned_cols=331 Identities=20% Similarity=0.262 Sum_probs=258.9
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.+..+...|.+.+++|.+.++.+++.+...++... .++.|++.||+|||+.+.++.++..++.+..... ++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 86 (352)
T cd06174 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--------SS 86 (352)
T ss_pred hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh--------cc
Confidence 45567778889999999999999987777777755 8999999999999999999999999887766444 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.+++.|++.|++.+...+....++.|++|+ +|++..++......+|..+++.+...+.+...+++.+.......++.
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999985 79999999999999999999888877654332222222111111110
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
.+ .. .
T Consensus 167 ~~------------------------------------~~---------------------~------------------ 171 (352)
T cd06174 167 AL------------------------------------LL---------------------L------------------ 171 (352)
T ss_pred HH------------------------------------HH---------------------H------------------
Confidence 00 00 0
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
.++ |.++...+..++..........+.+.+.
T Consensus 172 ------------------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (352)
T cd06174 172 ------------------------------------------------FLL-RLLLLLALAFFLLSFGYYGLLTYLPLYL 202 (352)
T ss_pred ------------------------------------------------HHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 000 5566666666666666677777888888
Q ss_pred HHc-CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHH
Q 047229 362 KAL-GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGF 439 (599)
Q Consensus 362 ~~~-g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~ 439 (599)
++. |.++.+.+.......++..+++++.+++.||+++|+. .+..+..+..++.+.....+ ....++..++.|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ 277 (352)
T cd06174 203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL-----LLLIGLLLAALGLLLLALAPSLALLLVALLLLGF 277 (352)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 875 8999999999999999999999999999999987631 44555666666655554433 4456677888899
Q ss_pred HhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 440 CLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 440 ~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
+.+...+....+..|..|++++++..|+.+....++.. ++|.+.+.+.|. .+++..+++.+++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~g~l~~~---------------~~~~~~~~~~~~~~ 341 (352)
T cd06174 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA-LGPLLAGLLLDT---------------GGYGGVFLILAALA 341 (352)
T ss_pred HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc---------------cCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999976 899999999886 35888899888887
Q ss_pred HHHHHHHH
Q 047229 520 FFACIVSI 527 (599)
Q Consensus 520 ~i~~i~~~ 527 (599)
+++.+...
T Consensus 342 ~i~~i~~~ 349 (352)
T cd06174 342 LLAALLLL 349 (352)
T ss_pred HHHHHHhe
Confidence 77766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-24 Score=214.91 Aligned_cols=398 Identities=16% Similarity=0.102 Sum_probs=262.5
Q ss_pred HHHhHhC--CCHHHHHH----HHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHH
Q 047229 53 DIKSSLG--YDQTTLNL----VSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQ 125 (599)
Q Consensus 53 ~l~~~~~--~s~~~~~~----~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 125 (599)
.+.+.++ +++++..+ +.+.+.+|.++ ++..|+++||+|||..+.++.++..++.++..++.. . +++.+
T Consensus 44 t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~--~---~~~e~ 118 (485)
T KOG0569|consen 44 TLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS--A---PSFEM 118 (485)
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--h---hhHHH
Confidence 3445566 55555443 46677777766 789999999999999999999998888777765533 2 67999
Q ss_pred HHHHHHHHhccccccchhHHHHHhhcCCCC-ccchhHHHHHhhhhhHHHHHHHHHH-hcC-CChHHHHHHHHHHHHHHHH
Q 047229 126 MCLYMLIGANSQSFPNTGALVTCVKNFPES-RGVVIGLLKGLIGLSGAIMTQIYHA-VNG-DNTKALILLLACLPTIVPI 202 (599)
Q Consensus 126 l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~-rg~~~g~~~~~~~lg~~i~~~i~~~-~~~-~~~~~~~~~~~~~~~~~~~ 202 (599)
++++|++.|+..|........++.|..|++ ||....+...+..+|..++..++.- ++. ...|.+++....+|.++.+
T Consensus 119 li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 119 LILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999965 9999999999998988888666553 443 4457788888888888888
Q ss_pred HhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhh
Q 047229 203 VFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWK 282 (599)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (599)
+.++++++.|+ |. ... ++..
T Consensus 199 ~~l~~~PESPk---------~L------------------------------------------------l~~---k~~~ 218 (485)
T KOG0569|consen 199 ALLPFLPESPK---------YL------------------------------------------------LIK---KGDE 218 (485)
T ss_pred HHHhcCCCCcc---------hH------------------------------------------------HHH---cCCH
Confidence 88888876655 21 000 0000
Q ss_pred chhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHH----HHHHHHHhhhcch-hhhhcch
Q 047229 283 GNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDML----ILFTATTCSIGGA-LAAIDNM 357 (599)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~-~~~~~~~ 357 (599)
++.+.++..-...++.+.+. +++ ..+.++++..+.++.+++++++++... ..+...+++.+.+ ....++-
T Consensus 219 ~~A~~sl~~y~G~~~~~~~~--e~~---~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Ys 293 (485)
T KOG0569|consen 219 EEARKALKFYRGKEDVEAEI--EEM---LREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYS 293 (485)
T ss_pred HHHHHHHHHHhCCCcchhHH--HHH---HHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHH
Confidence 00001111111111100000 000 000011111223455678888876543 2333333443333 3345555
Q ss_pred HHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH----hh-h--hh-
Q 047229 358 GQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF----AV-H--NS- 429 (599)
Q Consensus 358 ~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~--~~- 429 (599)
..++++.|+++.++.+.....++.+.+.++++.++.||+|||+ ++..+..++.+..+++.. .+ . +.
T Consensus 294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp------Lll~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (485)
T KOG0569|consen 294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP------LLLISLSLMAVALLLMSIALFLSNSFGSWLS 367 (485)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 6677888999999999999999999999999999999999885 555555555555444321 11 1 11
Q ss_pred --HHHHHHHHHHHhhhH-HHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcc
Q 047229 430 --LYFASIIIGFCLGAQ-LSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGAR 506 (599)
Q Consensus 430 --~~i~~~l~g~~~g~~-~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 506 (599)
.++..+++.+.++.. .|+.+-+.+|++|++.|+++.++......+..+++ ...+..+.+.. +
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv-~~~fp~l~~~~--------------g 432 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIV-GFAFPPLQNVI--------------G 432 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--------------c
Confidence 122233333333322 46677899999999999999999988888887643 34455555552 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 047229 507 CYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYN 543 (599)
Q Consensus 507 ~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 543 (599)
. ..|..+.+.+.+..+..+...+|+|+++-.|+.+
T Consensus 433 ~--~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 433 P--YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIE 467 (485)
T ss_pred c--hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence 2 5677777778888888888899999876555443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-23 Score=218.73 Aligned_cols=367 Identities=11% Similarity=0.035 Sum_probs=237.8
Q ss_pred HHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhccc-----CChHH-HHHHHHHHHHHHHHH
Q 047229 37 IMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVA-----PPWIV-LLSGSIMNFFGFFMI 109 (599)
Q Consensus 37 ~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~~-~~ig~~~~~~g~~~~ 109 (599)
+.+..|. .+..+...|...++.|.+.++++.++..... ....+++|+++||+ |||+. ++++.+...++...+
T Consensus 20 l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~ 98 (491)
T PRK11010 20 LGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 3334444 3445667788888899999999987444333 35689999999999 99986 556666665554444
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcC-CChH
Q 047229 110 WLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNG-DNTK 187 (599)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~-~~~~ 187 (599)
++. . +.++++.+.+.+++.|++.+...+....+..|++| ++|+++.++...+..+|.++++.+...+.+ ...|
T Consensus 99 a~~--~---~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW 173 (491)
T PRK11010 99 GFL--E---PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW 173 (491)
T ss_pred HHc--C---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence 322 1 22568888899999999999888888999999997 679999999999999999999887776655 2223
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhh
Q 047229 188 ALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLF 267 (599)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (599)
+..++......++..+..+.
T Consensus 174 r~~f~i~a~l~ll~~l~~~~------------------------------------------------------------ 193 (491)
T PRK11010 174 QGMYWLMAALLIPCIIATLL------------------------------------------------------------ 193 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh------------------------------------------------------------
Confidence 32222211111111100000
Q ss_pred cchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhh
Q 047229 268 IPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSI 347 (599)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 347 (599)
.+++ ++ .. +++ +..++....++++.++++..|...+..++..
T Consensus 194 ------~~e~-~~------------------~~--~~~-----------~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~ 235 (491)
T PRK11010 194 ------APEP-TD------------------TI--PVP-----------KTLEQAVVAPLRDFFGRNNAWLILLLIVLYK 235 (491)
T ss_pred ------cCCC-cc------------------cc--ccc-----------cchhhhHHHHHHHHHcCcCHHHHHHHHHHHH
Confidence 0000 00 00 000 0000001124567777887776655554443
Q ss_pred cchhhhhcchHHHHH-HcCCCCcchhhhHH-HHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH---HHH
Q 047229 348 GGALAAIDNMGQIGK-ALGYPTHSIASFIS-LISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY---LLI 422 (599)
Q Consensus 348 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~ 422 (599)
........+.++++. +.|++..+.+.... ...++.++|.+++|+++||+++|+ .+..+..+..+.. ..+
T Consensus 236 ~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~------~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 236 LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR------ALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHH
Confidence 333334455666654 47999999998874 556899999999999999999764 2222222222222 112
Q ss_pred HHhh-h-hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCc
Q 047229 423 AFAV-H-NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGL 500 (599)
Q Consensus 423 ~~~~-~-~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~ 500 (599)
.... + ..+.+..++..++.|...+...++..+..+++..++.+|+.+....+|.. +++.+.|.+.|.
T Consensus 310 ~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~-~~~~~~G~l~~~---------- 378 (491)
T PRK11010 310 SITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV-YVGPVAGWFVEA---------- 378 (491)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----------
Confidence 2221 1 12233444545556666677788888999999999999999988899876 566789999997
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 501 NCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 501 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
.+|+..|.+..++++++.++...+
T Consensus 379 -----~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 379 -----HGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred -----hChHHHHHHHHHHHHHHHHHHHHH
Confidence 358888998888888877766655
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-23 Score=199.63 Aligned_cols=365 Identities=14% Similarity=0.103 Sum_probs=255.8
Q ss_pred HHHHHHHHhhhhH-HHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHH
Q 047229 32 FATLLIMSVNGSS-YMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMI 109 (599)
Q Consensus 32 ~~~~~~~~~~g~~-~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~ 109 (599)
.....+++..|.. ....++.|.+++.|+++..|.+++..++..++.. +++.|++.+|+|+|+.+++|+.++++|+.++
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3334444556664 4458999999999999999999998888888866 8899999999999999999999999998887
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHH
Q 047229 110 WLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKA 188 (599)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~ 188 (599)
+-+.. ..+|..+++.-++.|.|.+...++++.+++...|+ +..+.+++.++.+++|++++|++++.+...++-
T Consensus 96 ~pAa~-----~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~- 169 (422)
T COG0738 96 WPAAS-----SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA- 169 (422)
T ss_pred hhhhh-----hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh-
Confidence 64422 26789999999999999999999999999999964 577889999999999999999999876542100
Q ss_pred HHHHHHHH-HHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhh
Q 047229 189 LILLLACL-PTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLF 267 (599)
Q Consensus 189 ~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (599)
.... +..... .........+.++.++.....+....
T Consensus 170 ----~~~~~~~~~~~--------------~~~~~~~v~~pYl~~~~~lvll~v~~------------------------- 206 (422)
T COG0738 170 ----LTMSAAQILAI--------------KGADASSVQFPYLILAGLLVLLAVLI------------------------- 206 (422)
T ss_pred ----hccCHHHHHHH--------------HHHHHHhhhhHHHHHHHHHHHHHHHH-------------------------
Confidence 0000 000000 00000111111221111111100000
Q ss_pred cchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhh
Q 047229 268 IPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSI 347 (599)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 347 (599)
...+. |+.+..+ .+. .+.++....+++|+|.++...+..|++.
T Consensus 207 -----~~~k~-------------------p~~~~~~------------~~~-~~~~~~~~~~l~~~~~~~~gvl~~FlYV 249 (422)
T COG0738 207 -----LLSKL-------------------PDLQVAA------------PSL-GASGSAGLSSLFQNKHLRLGVLAIFLYV 249 (422)
T ss_pred -----HhccC-------------------CcCCccc------------ccc-cccccchHHHHHhChHHHHHHHHHHHHH
Confidence 00000 0000000 000 0111115688999999999999999999
Q ss_pred cchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh
Q 047229 348 GGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV 426 (599)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (599)
+...+..++++.+..+ .|.+..+++...+.++.+.++||+++-++..|+...+ .+....+...+..+.....+
T Consensus 250 G~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k------~Laf~a~~~ill~~~~~l~~ 323 (422)
T COG0738 250 GAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK------YLAFYALIAILLLLAVALIG 323 (422)
T ss_pred hHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988 6999999999999999999999999999988886543 33444333333333333334
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 427 HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 427 ~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
.........++|+.++..+|...+...+..| ++...+.++..++ .+|+. +-|++.|++.|..
T Consensus 324 g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~ma-ivGGA-iiP~l~G~i~d~~ 385 (422)
T COG0738 324 GVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMA-IVGGA-IIPPLQGVIADMF 385 (422)
T ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeh-eecch-HHHHHHHHHHHhh
Confidence 4555667788899999999999999999998 6666665555544 45555 5699999999994
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=227.06 Aligned_cols=333 Identities=17% Similarity=0.208 Sum_probs=225.0
Q ss_pred HHHHHhhHH-HHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 44 SYMFALYSN-DIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 44 ~~~~~~~~~-~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
...+....| .+.+++|.+.++.+++.+...++.. .+++.|++.||+|||+++.++.++..++.++..++ +
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~ 83 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------S 83 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--------h
Confidence 344566667 8899999999999997777777665 49999999999999999999999998885444322 4
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIV 200 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 200 (599)
+++.+++.|+++|++.+...+....++.+++|+ +|++++++...+.++|..+++.+.+.+.+...|++.++......++
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 163 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLI 163 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhh
Confidence 566889999999999999999999999999985 7999999999999999999988888776433333322222221111
Q ss_pred HHH-hhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhh
Q 047229 201 PIV-FIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELN 279 (599)
Q Consensus 201 ~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (599)
..+ ...+.+ ++++
T Consensus 164 ~~il~~~~~~------------------------------------------------------------------~~~~ 177 (352)
T PF07690_consen 164 AAILFILFLP------------------------------------------------------------------EPPP 177 (352)
T ss_dssp HHHHHHCCC---------------------------------------------------------------------ST
T ss_pred hhhhHhhhhh------------------------------------------------------------------hccc
Confidence 111 011111 0000
Q ss_pred hhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCCh-hHHHhhcchhHHHHHHHHHhhhcchhhhhcchH
Q 047229 280 IWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDY-ALLQAIFSIDMLILFTATTCSIGGALAAIDNMG 358 (599)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (599)
+.+ +++++ +++++.+.... .++.+++++.+|...+..++..........++|
T Consensus 178 ~~~------------------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T PF07690_consen 178 PRE------------------RESPK---------ESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLP 230 (352)
T ss_dssp TTT--------------------SST---------TTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------------------ccccc---------ccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccc
Confidence 000 00000 00000000111 246677777777455555554444555667777
Q ss_pred HHH-HHcCCC-CcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHH
Q 047229 359 QIG-KALGYP-THSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASI 435 (599)
Q Consensus 359 ~~~-~~~g~~-~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 435 (599)
.+. +..|++ ..+.+...++..+...+++++.|++.||+++|+ +.........+..+.+...... +....++..+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (352)
T PF07690_consen 231 LYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR---RLLIAILLLILGALGLLLLPFSSSPVWLIIALF 307 (352)
T ss_dssp HHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHH
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 773 456888 678888899999999999999999999998653 1111122222222222222222 2345566777
Q ss_pred HHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhh
Q 047229 436 IIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNV 481 (599)
Q Consensus 436 l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~ 481 (599)
+.|++.+...+....+..|.+|++++|++.|+.+...++++. ++|
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-igP 352 (352)
T PF07690_consen 308 LIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGI-IGP 352 (352)
T ss_dssp HHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HCC
Confidence 889999999999999999999999999999999999998875 665
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=219.35 Aligned_cols=340 Identities=14% Similarity=0.113 Sum_probs=214.0
Q ss_pred hHHHHHhhHHH-HHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 047229 43 SSYMFALYSND-IKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAK 120 (599)
Q Consensus 43 ~~~~~~~~~~~-l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~ 120 (599)
..+.++.+.|. +++++|+|+.+.+++.+...++..+ +++.|++.||+|||+.+.++.++..++.+.++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-------- 87 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-------- 87 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--------
Confidence 35667888885 9999999999999987777777755 8999999999999999999999999987766444
Q ss_pred h-hHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047229 121 P-HVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPT 198 (599)
Q Consensus 121 ~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 198 (599)
+ +++.+++.|+++|++.+. ++....++.+++| ++|++++++...+..+|..+++.+...+...
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~-------------- 152 (366)
T TIGR00886 88 VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS-------------- 152 (366)
T ss_pred hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------
Confidence 5 789999999999999664 5667888999997 5799999998876667766665554432210
Q ss_pred HHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhh
Q 047229 199 IVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQEL 278 (599)
Q Consensus 199 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (599)
.......+...+|+..+...... ...+..+ + .....++.+
T Consensus 153 --------~~~~~~~~~~~~w~~~~~~~~~~------~~~~~~~--------------------~------~~~~~~~~~ 192 (366)
T TIGR00886 153 --------LIFGAGLPAHLAWGWAFVIVPAG------ILLLPAL--------------------L------IFFVGADTP 192 (366)
T ss_pred --------HHhcccccccccccchhHHHHHH------HHHHHHH--------------------H------HHHhcccCC
Confidence 00000000011233333110000 0000000 0 000001111
Q ss_pred hhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchH
Q 047229 279 NIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMG 358 (599)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (599)
++.++ +++.+ .++ .....+++.....++.+++|++|...+..++.......+..+.+
T Consensus 193 ~~~~~-------------~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (366)
T TIGR00886 193 PGKPA-------------TGKLS--FKG--------ARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFA 249 (366)
T ss_pred ccccc-------------chhcc--ccc--------ccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000 000 00000001111456788899998888777776666666777788
Q ss_pred HHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH--HHh---hhhhHHH
Q 047229 359 QIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLI--AFA---VHNSLYF 432 (599)
Q Consensus 359 ~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~i 432 (599)
.++++ .|+++.+++.+..+..+.+.+++++.|++.||+++|+ ....+......+..++ ... +.....+
T Consensus 250 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
T TIGR00886 250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR------KLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV 323 (366)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch------hHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 88876 5999999998899999999999999999999998864 2222232333332222 222 2222333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhh
Q 047229 433 ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIG 475 (599)
Q Consensus 433 ~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig 475 (599)
...+.+++.|...+....++++.+| +++|+++|+.+...++|
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 4444555666666666777788886 79999999988877765
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=216.81 Aligned_cols=326 Identities=13% Similarity=0.058 Sum_probs=210.9
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
...+.+..|.+.+++|+++++.+++.+...++... +++.|++.||+|||+++..+.++..++.+.+... ++
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--------~~ 78 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--------QT 78 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--------cc
Confidence 34556788899999999999999987777777755 8999999999999999999999988887766443 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHH-HHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLA-CLPTIV 200 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~ 200 (599)
++.+++.|+++|++.+...+....++.+++| ++|++++++...+..+|..+++.+...+.+...|++.+... ....+.
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 8889999999999999988888999999997 56999999999999899999888876655422222221111 111110
Q ss_pred HHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 047229 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNI 280 (599)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (599)
.+...+. .++++
T Consensus 159 ~~~~~~~------------------------------------------------------------------~~~~~-- 170 (377)
T PRK11102 159 AALVFFF------------------------------------------------------------------IPETL-- 170 (377)
T ss_pred HHHHHHh------------------------------------------------------------------CCccC--
Confidence 0000000 00000
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
++ ++ +++.+.++...++++.++++.++...+..++.......+..+.+.+
T Consensus 171 ----------------~~-~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (377)
T PRK11102 171 ----------------PK-ER-------------RQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFV 220 (377)
T ss_pred ----------------cc-cc-------------cCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 00 00 0000000111235677888888776666555554455555566666
Q ss_pred HHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH-HHHH--HHHhh--hhhHHHHH
Q 047229 361 GKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCI-GYLL--IAFAV--HNSLYFAS 434 (599)
Q Consensus 361 ~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~--~~~~~--~~~~~i~~ 434 (599)
+.+ .|+++.+.+.......++..+++++.|++.||+++|+ .+..+..+..+ +..+ ....+ .....+..
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN------MLRFGLWIQFIMGIWLVVSALLDLGFWALVVGV 294 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 655 6999999999999999999999999999999998875 33333333222 1111 11111 11222233
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccch-hhhhHhhhhH
Q 047229 435 IIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSP-IGSYIFNVRV 483 (599)
Q Consensus 435 ~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~-ig~~i~~~~l 483 (599)
.+.+.+.+...+.......|..| +++|++.++.+.... ++. ++++.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~-~~g~~~ 342 (377)
T PRK11102 295 AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGA-IVGALL 342 (377)
T ss_pred HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHH-HHHHHH
Confidence 33344444444445556677766 788888888765433 343 344433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=217.71 Aligned_cols=337 Identities=11% Similarity=-0.000 Sum_probs=212.2
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
...+....|++.++++.+.++.++..+.+.++.. .+++.|++.||+|||++++.+.+++.++.+.+..+ ++
T Consensus 32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--------~~ 103 (413)
T PRK15403 32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--------TS 103 (413)
T ss_pred HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--------CC
Confidence 4556777889999999999999996666666665 58999999999999999999999888887655433 78
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.++++|+++|++.+...+....++.|++|+ +|++++++...+..+|..+++.+++.+.+...|++.++...+..++.
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999987666667778899984 58999999999999999998887766654323333222211111111
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
.+.. ....| +.
T Consensus 184 ~~~~-----------------------------------------------------------~~~lp------~~---- 194 (413)
T PRK15403 184 FVGL-----------------------------------------------------------LLAMP------ET---- 194 (413)
T ss_pred HHHH-----------------------------------------------------------HHhCC------CC----
Confidence 1000 00000 00
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+++ ++ ++...+.....+++++|||.+|...+..++.......+....|.++
T Consensus 195 ---------------~~~----~~----------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l 245 (413)
T PRK15403 195 ---------------VKR----GA----------VPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVIL 245 (413)
T ss_pred ---------------ccc----cC----------CCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 000 00 0000001112457889999999887776666555556666778888
Q ss_pred HHc-CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCc-hHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHH
Q 047229 362 KAL-GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPR-PLLLTLVILFSCIGYLLIAFAVHN-SLYFASIIIG 438 (599)
Q Consensus 362 ~~~-g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~g 438 (599)
++. |+++.+.++.......+..++..+.+.+.++..+++.... ..+..++.++..++.. ...+.. ..++..++.+
T Consensus 246 ~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~--~~~~~~~~~~~~~~l~~ 323 (413)
T PRK15403 246 IDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL--LWPHVWLWSVLGTSLYA 323 (413)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH--HccccHHHHHHHHHHHH
Confidence 775 8999999888877777778877777665533222210000 0011112111111111 112222 2355667778
Q ss_pred HHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 439 FCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 439 ~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++.+...+......-... ...+|++.++.+.....+.. .++...+.+.+.
T Consensus 324 ~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~~-~~~~~~g~~~~~ 373 (413)
T PRK15403 324 FGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVMA-VSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 888887776664332211 23478888888776666654 666677776665
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=217.22 Aligned_cols=367 Identities=13% Similarity=0.041 Sum_probs=216.2
Q ss_pred HHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHH-HHhccCCCChhH
Q 047229 46 MFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWL-SVSHRFGAKPHV 123 (599)
Q Consensus 46 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~-~~~~~~~~~~~~ 123 (599)
..+.+...+.+++|+++.+.+++.+...+.. +.+++.|++.||+|||++++++.....++...... ...... ..+..
T Consensus 29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 107 (420)
T PRK09528 29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLL-QYNIL 107 (420)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3455556678889999999999766666666 45999999999999999998876665544322111 111000 00111
Q ss_pred HHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 047229 124 WQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIV 203 (599)
Q Consensus 124 ~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (599)
...++.+++.|.+.....+....+ .+.+++++|+..|......++|..+++++.+.+.+.++ ++.++...+..++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~-~~~f~~~~~~~~~~~~ 185 (420)
T PRK09528 108 LGAIVGGIYLGFGFLAGAGAIEAY-IERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINP-QINFWLGSGSALILLV 185 (420)
T ss_pred HHHHHHHHHhhhhhccchhhhhhH-HHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCc-hHhHHHHHHHHHHHHH
Confidence 112233444444333332222222 23334567888898888888999999888776654222 2221111111111110
Q ss_pred hhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhc
Q 047229 204 FIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKG 283 (599)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (599)
..+.+ ++++++..
T Consensus 186 ~~~~~------------------------------------------------------------------~~~~~~~~- 198 (420)
T PRK09528 186 LLFFA------------------------------------------------------------------KPDAPSTA- 198 (420)
T ss_pred HHhcc------------------------------------------------------------------cccccchh-
Confidence 00000 10000000
Q ss_pred hhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH
Q 047229 284 NKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
+..++ ..+++++......++.+|+|.+|.+.+..++..........+++.++.+
T Consensus 199 -----------------~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 252 (420)
T PRK09528 199 -----------------KVANA---------LGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFAS 252 (420)
T ss_pred -----------------hhccc---------hhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000011112234567888887765554433333233333345655544
Q ss_pred c----CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH
Q 047229 364 L----GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIG 438 (599)
Q Consensus 364 ~----g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g 438 (599)
. +.+..+.+...++..+...++.++.|++.||+++|+ .+..+.++.+++..++... ++..+++...+.+
T Consensus 253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g 326 (420)
T PRK09528 253 FFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN------ALLLAGTIMAVRIIGSGFATGPLEVSILKLLHA 326 (420)
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch------hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 2 455566678888888889999999999999999875 3445455555555444433 3444555566677
Q ss_pred HHhhhHHHHHHHHHHHhhCCCcccchhhh-hhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHH
Q 047229 439 FCLGAQLSLLVTIISELFGLKHYSTLYNV-GSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISA 517 (599)
Q Consensus 439 ~~~g~~~~~~~~~~~e~~~~~~~g~~~g~-~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 517 (599)
++.+...+....++.|.+|++.+++.++. .++...+|.. ++|.+.|.+.|. .+|+.+|.+.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~-ig~~~~G~l~~~---------------~G~~~~f~~~~~ 390 (420)
T PRK09528 327 FEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAV-FLSTLAGNLYDS---------------IGFQGTYLILGG 390 (420)
T ss_pred HHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHH-HHHHHHHHHHHh---------------hCchHHHHHHHH
Confidence 77777767777888999999999988776 4666778865 899999999998 358999998888
Q ss_pred HHHHHHHHHHHHH
Q 047229 518 ATFFACIVSIILV 530 (599)
Q Consensus 518 ~~~i~~i~~~~~~ 530 (599)
+.++..++.++..
T Consensus 391 ~~~i~~~~~~~~~ 403 (420)
T PRK09528 391 IVLLFTLISVFTL 403 (420)
T ss_pred HHHHHHHHHHHHh
Confidence 7766665555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=213.50 Aligned_cols=353 Identities=14% Similarity=0.021 Sum_probs=220.6
Q ss_pred HhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHH
Q 047229 48 ALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQM 126 (599)
Q Consensus 48 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l 126 (599)
....+.+.++++.+..+.+++.+.+.+.... +++.|+++||+|||++++++.++..++.+.+.+. ++.
T Consensus 23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--------~~~--- 91 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--------IHP--- 91 (393)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--------HHH---
Confidence 3444566789999999999987777777654 9999999999999999999999988886655332 332
Q ss_pred HHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFI 205 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (599)
++.|+++|++.+...|+...++.|++| ++|+++.|+......+|.++++.+++.+.+.. +...+.+.....++..+..
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~~~ 170 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAALFN 170 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999998 56999999999988888899988887765421 1111110000000000000
Q ss_pred hccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchh
Q 047229 206 PTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNK 285 (599)
Q Consensus 206 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (599)
..++ +.+.+ +
T Consensus 171 ~~l~------------------------------------------------------------------~~~~~-~--- 180 (393)
T PRK11195 171 LFIP------------------------------------------------------------------RLGAR-R--- 180 (393)
T ss_pred hcCC------------------------------------------------------------------CCccc-c---
Confidence 0000 00000 0
Q ss_pred hhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-c
Q 047229 286 LQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-L 364 (599)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 364 (599)
+.. +.+ + ....+......+.++++|.+........+...........++.+.++ +
T Consensus 181 -----------~~~---~~~-~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (393)
T PRK11195 181 -----------PGQ---SWN-P---------IALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVAL 236 (393)
T ss_pred -----------ccc---CCC-H---------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 000 000 0 00000000123456777766544433333333333344445566655 6
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhh
Q 047229 365 GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGA 443 (599)
Q Consensus 365 g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~ 443 (599)
|.++.+.+...+..+++..++.++.+++.||.++++ .+..+.. ..+....+...+ .....+..++.|++.+.
T Consensus 237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~------~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR------VLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc------hHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999888765543 2333332 222222233222 22344556677888888
Q ss_pred HHHHHHHHHHHhhCCCc-ccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHH
Q 047229 444 QLSLLVTIISELFGLKH-YSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFA 522 (599)
Q Consensus 444 ~~~~~~~~~~e~~~~~~-~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 522 (599)
..+...+...+..|++. +|.+.++.++..+++.. ++..+.+.+ +.. +-+..+++.....+++
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~-~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAML-LMLGLYSLL-VKL---------------GVPVVAVIVGFGLLVA 372 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHH-HHHHHHHHH-HHc---------------CCCHHHHHHHHHHHHH
Confidence 77777777777755544 69999999999999865 777777754 331 3455555555544555
Q ss_pred HHHHHHHH
Q 047229 523 CIVSIILV 530 (599)
Q Consensus 523 ~i~~~~~~ 530 (599)
..+.+.++
T Consensus 373 ~~~~~~~~ 380 (393)
T PRK11195 373 LAMALLWR 380 (393)
T ss_pred HHHHHHHH
Confidence 55544443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=214.29 Aligned_cols=330 Identities=14% Similarity=0.037 Sum_probs=217.7
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.+.+.+..|++.+++|+++.+.+++.+.+.++..+ +++.|+++||+|||+++.++.++..++.+..... ++
T Consensus 24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--------~~ 95 (394)
T PRK11652 24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--------HS 95 (394)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------cc
Confidence 44556678999999999999999977777777765 8999999999999999999999888887655433 67
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHH-HHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLL-ACLPTIV 200 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~ 200 (599)
++.+++.|++.|++.+...+.......++++ ++|+++.++...+..++..+++.+.+.+.+...|++.+.. ++...+.
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 8999999999999998877777778888887 5689999999888888888888777766543223222211 1111111
Q ss_pred HHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 047229 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNI 280 (599)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (599)
.++..+.. ++.
T Consensus 176 ~~~~~~~~------------------------------------------------------------------~~~--- 186 (394)
T PRK11652 176 TFSMARWM------------------------------------------------------------------PET--- 186 (394)
T ss_pred HHHHHHhC------------------------------------------------------------------Ccc---
Confidence 00000000 000
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
+++ + ++ +++....+++.++++.+|...+..+........+....+.+
T Consensus 187 ----------------~~~---~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (394)
T PRK11652 187 ----------------RPA---D------------AR--RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVL 233 (394)
T ss_pred ----------------Ccc---c------------cc--hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 000 0 00 00012335677888887765554444333333334445666
Q ss_pred HHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHH
Q 047229 361 GKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF---AVHNSLYFASII 436 (599)
Q Consensus 361 ~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~l 436 (599)
+++ .|+++.+.+.......++..++.++.+++.||.+++. ...........+....... .+........++
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T PRK11652 234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-----WQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAAL 308 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 666 6888888888777777778888888888888876321 1111222222222111111 122334556677
Q ss_pred HHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 437 IGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 437 ~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
.+++.+...+....+..|.+| +++|+..++.+....+|+. +++.+.+.+.+.
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~-~~~~~~~~~~~~ 360 (394)
T PRK11652 309 FFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSG-LAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHH-HHHHHHHHccCC
Confidence 788889888998998999886 6889999999888888876 777777766443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=213.73 Aligned_cols=359 Identities=9% Similarity=0.026 Sum_probs=228.3
Q ss_pred HHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCC-hHHHHHHHHHHHHHHHHHHHHHhccCCCChhHH
Q 047229 47 FALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPP-WIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVW 124 (599)
Q Consensus 47 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~-r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (599)
++.+.+.+.+++|++.+|++++.+...++.+. +++.|+++||+|+ |+++.++.+...++.....+. ++++
T Consensus 22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~--------~~~~ 93 (418)
T TIGR00889 22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV--------TTPA 93 (418)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--------cCHH
Confidence 46677778899999999999987777777755 9999999999965 778887777665654443222 6788
Q ss_pred HHHHHHHHHhccccccchhHHHHHhhc--------CC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHH
Q 047229 125 QMCLYMLIGANSQSFPNTGALVTCVKN--------FP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLAC 195 (599)
Q Consensus 125 ~l~~~r~l~G~g~g~~~~~~~~~~~~~--------fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~ 195 (599)
.+++.|++.|++.+...+....+...+ .. ..|.+..|. +|.++++.+.+.+.....+..++..++
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~~f~~~~~ 167 (418)
T TIGR00889 94 GMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNIQLYITAG 167 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 888999999998776666554443211 11 234555553 444555555444311111111111111
Q ss_pred HHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhh
Q 047229 196 LPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIK 275 (599)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (599)
...+..+ ..+.+ +
T Consensus 168 ~~~~~~~-~~~~~------------------------------------------------------------------~ 180 (418)
T TIGR00889 168 SSALLGV-FALTL------------------------------------------------------------------P 180 (418)
T ss_pred HHHHHHH-HHhcC------------------------------------------------------------------C
Confidence 1110000 00000 0
Q ss_pred hhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhc
Q 047229 276 QELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAID 355 (599)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 355 (599)
+. |++++ + ++...++....+.++++|+|+++.+.+..++..........
T Consensus 181 e~-------------------~~~~~---~---------~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 229 (418)
T TIGR00889 181 DI-------------------PVAKS---T---------AKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNI 229 (418)
T ss_pred CC-------------------CCCcc---c---------cccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHH
Confidence 00 00000 0 00000000112345688999988777766665444434445
Q ss_pred chHHHHHHcCCCC--------cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-
Q 047229 356 NMGQIGKALGYPT--------HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV- 426 (599)
Q Consensus 356 ~~~~~~~~~g~~~--------~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~- 426 (599)
+.+.+.++.|.++ ...+...++..+...++.++.|+++||+|+|+ ++..+.++..++..++....
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~------~l~~~~~~~~v~~~l~~~~~~ 303 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK------VMLLSLVAWALRFGFFAYGDP 303 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHHHHHHHcCc
Confidence 5666777767554 44577888888999999999999999998875 56666666666654444321
Q ss_pred -h---hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhh-ccchhhhhHhhhhHHHHHHhhhhhhcCCCCcc
Q 047229 427 -H---NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGS-VSSPIGSYIFNVRVAGRLYDREALKQGKGGLN 501 (599)
Q Consensus 427 -~---~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~ 501 (599)
. ..+++..++.|++.+...+....++.|.+|++.++++.|+.+ ....+|.. ++|.+.|.++|..+...
T Consensus 304 ~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~-iGp~l~G~l~~~~g~~~------ 376 (418)
T TIGR00889 304 EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSL-LGYILSGVMVEKMFAYG------ 376 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhcccc------
Confidence 1 224455677788888888888899999999999999999997 56778865 89999999999843111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047229 502 CIGARCYRVAFVTISAATFFACIVSIILVLRT 533 (599)
Q Consensus 502 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 533 (599)
..+|+.+|.+.+++.+++.++..++.++.
T Consensus 377 ---~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 377 ---TFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 13599999999888888888777777544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=216.13 Aligned_cols=343 Identities=14% Similarity=0.073 Sum_probs=213.0
Q ss_pred HHHHHhhHHHHHhHhC--CCHHHHHHHHHH--HH---hHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 047229 44 SYMFALYSNDIKSSLG--YDQTTLNLVSFF--KD---LGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSH 115 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~--~s~~~~~~~~~~--~~---~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~ 115 (599)
.+.++...+.+.+++. .++++.+...+. +. +.. +.+++.|++.||+|||+++.++.++..++.++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--- 85 (394)
T TIGR00883 9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL--- 85 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC---
Confidence 4455666677776654 455666553221 11 222 237899999999999999999999998887766443
Q ss_pred cCCCChhHH--------HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCCh
Q 047229 116 RFGAKPHVW--------QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNT 186 (599)
Q Consensus 116 ~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~ 186 (599)
+++. .+++.|+++|++.+...+....++.|++| ++|++..++...+..+|..+++.+...+...
T Consensus 86 -----~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~-- 158 (394)
T TIGR00883 86 -----PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL-- 158 (394)
T ss_pred -----CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3332 57789999999999999999999999997 5799999999999888888887665443210
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHh
Q 047229 187 KALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSL 266 (599)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (599)
+... .....+|+..+. ..++..++.. .
T Consensus 159 ---------------------~~~~-~~~~~~w~~~~~-------~~~~~~~~~~---------------------~--- 185 (394)
T TIGR00883 159 ---------------------LGDD-ALLEWGWRIPFL-------VSAVLVLIGL---------------------Y--- 185 (394)
T ss_pred ---------------------cCHH-HhhccchHHHHH-------HHHHHHHHHH---------------------H---
Confidence 0000 000111221111 0000000000 0
Q ss_pred hcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchh--HHHHHHHHH
Q 047229 267 FIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSID--MLILFTATT 344 (599)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 344 (599)
+....++.++ .+.+ +++ ++....+.++.+++++ ++...+..+
T Consensus 186 ---~~~~~~~~~~-~~~~------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T TIGR00883 186 ---LRRNLEETPV-FEKA------------------------------QEK--HKKKRGPIRETLTKHRKPFLLGLGLVI 229 (394)
T ss_pred ---HHHhcCCChh-HHHH------------------------------Hhc--cccccCCHHHHHHhchHHHHHHHHHHH
Confidence 0000000000 0000 000 0001122455666654 666555555
Q ss_pred hhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH-HH
Q 047229 345 CSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL-LI 422 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~ 422 (599)
+..........+++.+.++ .|.++.+.+.......+.+.+++++.|+++||++||+ .....+.+....+.. +.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~~~~~~~~~ 304 (394)
T TIGR00883 230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-----VLIIFTVLAALLAVPLLM 304 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-----HHHHHHHHHHHHHHHHHH
Confidence 5555555566678888754 6898888988889999999999999999999998775 122222222222211 11
Q ss_pred HH---hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhh-ccchhhhhHhhhhHHHHHHhhh
Q 047229 423 AF---AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGS-VSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 423 ~~---~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
.. .+.....+..++.+++.+...+....++.|.+|++.++++.|+.+ ....+|+. ++|.+.|.+.|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~-~~p~~~g~l~~~~ 376 (394)
T TIGR00883 305 ALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGG-FAPYIAAALVAMT 376 (394)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhh-HHHHHHHHHHHHc
Confidence 11 122233445566788888888889999999999999999999854 45556754 8899999999983
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-23 Score=209.36 Aligned_cols=344 Identities=12% Similarity=0.006 Sum_probs=237.8
Q ss_pred HHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHH----HHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 47 FALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVL----LSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 47 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~----~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
+-++.|.+.+++|.|.++++++.+...+.. +.+++.|++.||+|||+.. .++..++.+ ...... +
T Consensus 23 ~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-------~~~~~~---~ 92 (382)
T TIGR00902 23 FLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-------AFSAGA---H 92 (382)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-------HHHHhh---h
Confidence 445677888999999999999655555555 5599999999999985433 222222211 111122 6
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
+++.+++.|+++|.+.+...|....+..+ ++++|+++.|....+.++|.++++++.+.+.+...|+..+.......++.
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFM 171 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 79999999999999888888877777654 46779999999999999999999998887765322222111110000000
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
+ .. ...+++.+
T Consensus 172 ~------------------------------------------------------------~~-------~~~~~~~~-- 182 (382)
T TIGR00902 172 L------------------------------------------------------------IG-------FLIKPTIP-- 182 (382)
T ss_pred H------------------------------------------------------------HH-------HHcCCCCC--
Confidence 0 00 00000000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+++++ ++ +++....+.++++|+|++|...+..++.......+..+.+.+.
T Consensus 183 ---------------~~~~~-------------~~--~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l 232 (382)
T TIGR00902 183 ---------------PKDAI-------------PE--DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYW 232 (382)
T ss_pred ---------------CCccc-------------cc--cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 0001122467899999999988888877777777778888888
Q ss_pred HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Q 047229 362 KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFC 440 (599)
Q Consensus 362 ~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~ 440 (599)
++.|.++.+.+...+...++..++.++.+++.||++.|+ .+.++.+...+...++...+ .+.++...++.|+.
T Consensus 233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD------LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT 306 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH------HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 889999999999888888888999999999999987764 56677777777766665444 34456677888999
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhh-ccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGS-VSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
.+...+....++.+. |++++++..++.+ +...+|.. ++|.++|.++|.. ++ ..|.+.+++.
T Consensus 307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~-~g~~~~G~l~~~~---------------g~-~~~~~~~~~~ 368 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIA-IFTAFAGFIYPTL---------------GA-GTFVFMAIIA 368 (382)
T ss_pred HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc---------------cH-HHHHHHHHHH
Confidence 999999999999988 8889999999876 45667765 8999999999983 34 5566666666
Q ss_pred HHHHH
Q 047229 520 FFACI 524 (599)
Q Consensus 520 ~i~~i 524 (599)
+++.+
T Consensus 369 ~~~~~ 373 (382)
T TIGR00902 369 AAAFF 373 (382)
T ss_pred HHHHH
Confidence 55443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-22 Score=204.24 Aligned_cols=366 Identities=11% Similarity=0.057 Sum_probs=212.0
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHhhHHHHHhHhCCCHHHHHHH-HHHHHhHhhhhhhhhhhhcccCChHHHH-HHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLV-SFFKDLGGNLGVLAGLTYEVAPPWIVLL-SGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr~G~r~~~~-ig~~~~ 102 (599)
.+.|..++..++..+. .....+...+.+.+++|+++++++++ +.....+.+.+++.|...||+|||+.++ .+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~--~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~ 92 (393)
T PRK15011 15 LTSTAFLIVAFLTGIA--GALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLG 92 (393)
T ss_pred chhHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 4555555543333322 22233445556789999999999996 4556667777665544599999998754 444444
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHH-HHHhccccccchhHHHHHhhcCCC-Cc--cchhHHHHHhhhhhHHHHHHHH
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYM-LIGANSQSFPNTGALVTCVKNFPE-SR--GVVIGLLKGLIGLSGAIMTQIY 178 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~g~g~~~~~~~~~~~~~fp~-~r--g~~~g~~~~~~~lg~~i~~~i~ 178 (599)
.++..+.+++ ++++++++.+ ++.|.+ +...+....+..++.++ +| +...++...+.++|.+++++++
T Consensus 93 ~~~~~~~~~~--------~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~ 163 (393)
T PRK15011 93 VLACTLFAWN--------RNYFVLLFVGVFLSSFG-STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA 163 (393)
T ss_pred HHHHHHHHHh--------hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4554433222 6777776554 445554 45566666667776653 24 3344777778889999999888
Q ss_pred HHhcCCChHHHHHHHHHH-HHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHH
Q 047229 179 HAVNGDNTKALILLLACL-PTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIAT 257 (599)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (599)
+.+.+..+|+..+..... .++..+.....++
T Consensus 164 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~------------------------------------------------ 195 (393)
T PRK15011 164 YALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP------------------------------------------------ 195 (393)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC------------------------------------------------
Confidence 877653333332222211 1111110000000
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHH
Q 047229 258 ALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDML 337 (599)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (599)
+.+ +++++ .++ ..+.. ++ +.+..+
T Consensus 196 ------------------~~~------------------~~~~~-~~~---------~~~~~--------~~--~~~~~~ 219 (393)
T PRK15011 196 ------------------SMR------------------KELPL-ATG---------TLEAP--------RR--NRRDTL 219 (393)
T ss_pred ------------------ccC------------------CCCcc-ccc---------ccccc--------cc--ccccHH
Confidence 000 00000 000 00000 00 001122
Q ss_pred HHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSC 416 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 416 (599)
......++.......+..+.|.++++ +|+++.+.+.+.+...+...+++++.|+++||+++|+ .+..+.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~------~~~~~~~~~~ 293 (393)
T PRK15011 220 LLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF------LMRVAAVAGV 293 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHH
Confidence 22222222223333344567777755 6999888888888777888899999999999998875 2233332322
Q ss_pred HHHHHHHH-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhc
Q 047229 417 IGYLLIAF-AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQ 495 (599)
Q Consensus 417 ~~~~~~~~-~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~ 495 (599)
+....... .+.....+..++.+++.|...+..+.+..|.+| +++|++.++.+....+|.. ++|.+.|.+.|.
T Consensus 294 ~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~-~g~~l~G~i~~~----- 366 (393)
T PRK15011 294 CFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWI-IAGSLAGIVAEI----- 366 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHH-HHHHHHHHHHHH-----
Confidence 22222222 223333444455566666666667778889887 5699999998888888875 899999999987
Q ss_pred CCCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 047229 496 GKGGLNCIGARCYRVAFVTISAATFFACIVSII 528 (599)
Q Consensus 496 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 528 (599)
.+|+..|.+..++.+++.+..++
T Consensus 367 ----------~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 367 ----------WNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHh
Confidence 34888888877777766655543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-23 Score=210.94 Aligned_cols=334 Identities=13% Similarity=0.023 Sum_probs=223.9
Q ss_pred HHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 047229 54 IKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLI 132 (599)
Q Consensus 54 l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l 132 (599)
+.+|.+....+++++.+.+.+++++ .+|+|.+.||++..+.+....+.+++-.++. ... +|++.+++.|++
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~-----~~~---~s~~~~ialr~l 143 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLT-----AAV---HSFPGLIALRFL 143 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHH-----HHH---hhhHHHHHHHHH
Confidence 5589999999999988888888866 8899999999997777666555444432222 113 789999999999
Q ss_pred HhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHHHHHh
Q 047229 133 GANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNG-------DNTKALILLLACLPTIVPIVF 204 (599)
Q Consensus 133 ~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 204 (599)
.|+.++..+|....++..||. ++||+.+|++.+..++|+++++.+..++.+ .+|++.+++.+++.+..++++
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence 999999999999999999996 579999999999999999999999998642 233444556666677777777
Q ss_pred hhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhch
Q 047229 205 IPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGN 284 (599)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (599)
.++++..|++.. |. .++++...
T Consensus 224 f~~lp~~P~~~~------fl--------------------------------------------------~~~ek~~~-- 245 (495)
T KOG2533|consen 224 FFFLPDNPSKAW------FL--------------------------------------------------TDEEKELV-- 245 (495)
T ss_pred EEEecCChhhcc------cc--------------------------------------------------chHHHHHH--
Confidence 777765555320 10 00000000
Q ss_pred hhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-
Q 047229 285 KLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA- 363 (599)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 363 (599)
.++.++++. ....++.+...+++.+++|..|...+..++.....+++.+++|.+.++
T Consensus 246 -----~~~~~~~~~-----------------~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~ 303 (495)
T KOG2533|consen 246 -----VERLRESPS-----------------GGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN 303 (495)
T ss_pred -----HHHHHhccC-----------------CCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcC
Confidence 000000000 000111345678999999999999999999999999999999999988
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHH-HHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHh
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLL-TLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCL 441 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~ 441 (599)
.|++..++..+..+..++++++.++.|+++||+.. ..++++.. ....+...++.+.+...+ ........+....+.
T Consensus 304 ~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~--~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 381 (495)
T KOG2533|consen 304 GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKT--IFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGL 381 (495)
T ss_pred CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhh
Confidence 57999999999999999999999999999999530 00112233 333334444434443332 222333333334445
Q ss_pred hhHHHHHHHHHHHhhCCCcccch-hhhhhccchhhhh
Q 047229 442 GAQLSLLVTIISELFGLKHYSTL-YNVGSVSSPIGSY 477 (599)
Q Consensus 442 g~~~~~~~~~~~e~~~~~~~g~~-~g~~~~~~~ig~~ 477 (599)
+...+.......+......+... .+....+.+.++.
T Consensus 382 ~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~ 418 (495)
T KOG2533|consen 382 IATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGA 418 (495)
T ss_pred HHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHH
Confidence 55555566666666544433333 3333344444444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=211.32 Aligned_cols=374 Identities=14% Similarity=0.023 Sum_probs=231.1
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
++.++.++..+++++.... .|..+...+.+++.||++++..+++.+.+.+.. +++|+.|.++|||.||+++.+|..++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 3444555555566666555 788888889999999999999999877777666 55999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++.+..+++ +.||++.++|.+.|+|.+...|.++.+++|.|| ++|++++++++.+..+|..++.+.+..+
T Consensus 109 ~~Av~~~~fs--------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v 180 (493)
T KOG1330|consen 109 TLAVFASGFS--------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV 180 (493)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence 9998766555 679999999999999999999999999999998 4699999999999989988886665554
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 182 NGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
-+... .|++.|+..+.+ .++..+
T Consensus 181 a~~~~-------------------------------~Wr~af~~~avl-------~vi~~~------------------- 203 (493)
T KOG1330|consen 181 ASLTF-------------------------------WWRWAFRGSAVL-------GVIVGL------------------- 203 (493)
T ss_pred ccCcc-------------------------------ceEEEEEeehHH-------HHHHHH-------------------
Confidence 43211 123333311111 111100
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFT 341 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (599)
+++ ++ .++|++...+ +.+. + .+..++......+.+.+.+++.+....+
T Consensus 204 -L~~------~f-~~eP~rga~~-------------~~~~---~--------~~~~~~~ts~~kDl~~l~~~~v~v~~sl 251 (493)
T KOG1330|consen 204 -LVF------LF-VREPERGARD-------------EVDG---E--------NKMVKPFTSVWKDLKVLAKIKVFVLSSL 251 (493)
T ss_pred -HHH------hh-ccCccccccc-------------cccc---C--------CcCCCCccchHHHHHHHHccCceeeehH
Confidence 000 00 1111110000 0000 0 0001111122233455556555544333
Q ss_pred HHHhhhcchhhhhcchHHHH----HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccC-CchHHHHH----HH
Q 047229 342 ATTCSIGGALAAIDNMGQIG----KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKV-PRPLLLTL----VI 412 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~-~~~~~~~~----~~ 412 (599)
......+..-.+..+.|.+. +-.|++..+...+..+...++.+|.+.+|.++||+.++.+- .+..+-.. +.
T Consensus 252 ~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~ 331 (493)
T KOG1330|consen 252 GIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGA 331 (493)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhh
Confidence 33333333333444444332 22477877787888999999999999999999998765421 11111111 11
Q ss_pred HHHHHHHHHHHHhhhhh--HHHHHHHHHHHhhh-HHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHh
Q 047229 413 LFSCIGYLLIAFAVHNS--LYFASIIIGFCLGA-QLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489 (599)
Q Consensus 413 ~~~~~~~~~~~~~~~~~--~~i~~~l~g~~~g~-~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~ 489 (599)
.+.+..+.+........ ..+.++++|..... .++....+..|+.|+++|.+++++......+.+-.-+|++.|.+.|
T Consensus 332 ~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 332 PLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD 411 (493)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence 11111111111112222 33334444443322 2334455678889999999999998876655555466779999998
Q ss_pred hhhhhc
Q 047229 490 REALKQ 495 (599)
Q Consensus 490 ~~~~~~ 495 (599)
+....+
T Consensus 412 ~l~g~~ 417 (493)
T KOG1330|consen 412 KLRGYK 417 (493)
T ss_pred HhhCCC
Confidence 865443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-22 Score=201.73 Aligned_cols=326 Identities=12% Similarity=-0.006 Sum_probs=216.2
Q ss_pred HHhhHHHHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCCh----HHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 47 FALYSNDIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPW----IVLLSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 47 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r----~~~~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
+.++.|.+.+++|.|.++++++.+.+.+... .+++.|++.||+||| +.+.++.....+. +.. ..+
T Consensus 23 ~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-------~~~---~~~ 92 (382)
T PRK11128 23 FLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVA-------FWF---GAH 92 (382)
T ss_pred HhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHH-------HHH---hcc
Confidence 4455677788899999999997666666665 499999999999994 3332222221111 111 126
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
+++.+++.|++.|++.+...+....+..++ +++|+++.+....+..+|..+++++++.+.+...|+..++......++.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 799999999999999888888776666665 5678888988888888999999999887765322222211111100000
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
. +..+ ..+++
T Consensus 172 ~------------------------------------------------------------~~~~-------~~~~~--- 181 (382)
T PRK11128 172 L------------------------------------------------------------LGQL-------LRPTI--- 181 (382)
T ss_pred H------------------------------------------------------------HHHH-------ccCCC---
Confidence 0 0000 00000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+ |+++ ++++.++...++++++|+|.+|...+..++..........+.+.+.
T Consensus 182 ~--------------~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 232 (382)
T PRK11128 182 M--------------PQGE---------------SRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW 232 (382)
T ss_pred C--------------Cccc---------------cccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 0 0000 0000001123568899999999877766665555555566677788
Q ss_pred HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Q 047229 362 KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFC 440 (599)
Q Consensus 362 ~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~ 440 (599)
++.|+++.+.+...+...++..+..++.|++.||+++|+ .+..+.+..+++.+++...+ .+..++..++.|++
T Consensus 233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD------LLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 888999888999888888889999999999999998775 45556666666555544333 34456667778888
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhh-ccchhhhhHhhhhHHHHHHhh
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGS-VSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~~~~~ 490 (599)
.+...+....+..+. +++++++..++.+ ....+|.. ++|.++|.++|.
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-ig~~i~G~l~~~ 355 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIA-IMTVLSGFLYQH 355 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 888878777777776 5566788888776 33445544 899999999998
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=201.78 Aligned_cols=361 Identities=12% Similarity=0.032 Sum_probs=220.7
Q ss_pred hHHHHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHH-HHhccCCCChhHHHHH
Q 047229 50 YSNDIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWL-SVSHRFGAKPHVWQMC 127 (599)
Q Consensus 50 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~-~~~~~~~~~~~~~~l~ 127 (599)
+.+.+.+++|.++++.+++.+...+... .+++.|+++||+|||+.++.+.+...++...... ...... ..+.+..++
T Consensus 25 ~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 103 (396)
T TIGR00882 25 FPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLL-QSNILVGAI 103 (396)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHH
Confidence 3345677899999999997666666664 5999999999999999998877666554332211 111100 001233456
Q ss_pred HHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 047229 128 LYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPT 207 (599)
Q Consensus 128 ~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (599)
+.+++.|++.+...+....+..+.- ++++...|......++|..+++.+++.+.+.++...++..+.+..+..++..
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~-- 180 (396)
T TIGR00882 104 VGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLM-- 180 (396)
T ss_pred HHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHH--
Confidence 6788899988887777666655532 3455677777777788888888886655432222111111111111110000
Q ss_pred cccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhh
Q 047229 208 IRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQ 287 (599)
Q Consensus 208 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 287 (599)
...+++++
T Consensus 181 -----------------------------------------------------------------~~~~~~~~------- 188 (396)
T TIGR00882 181 -----------------------------------------------------------------FAKPKAPS------- 188 (396)
T ss_pred -----------------------------------------------------------------HhCCCCch-------
Confidence 00000000
Q ss_pred hhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHc---
Q 047229 288 ALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKAL--- 364 (599)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 364 (599)
+++.++. .+.++++.+..+.++.+|+|++|...+..++..........+.+.++++.
T Consensus 189 -----------~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~ 248 (396)
T TIGR00882 189 -----------SATVANA---------LGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFAT 248 (396)
T ss_pred -----------hhhhhcc---------cccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0000000 00001111223567889999988766555444333333444566666553
Q ss_pred -CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhh
Q 047229 365 -GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIGFCLG 442 (599)
Q Consensus 365 -g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g 442 (599)
+.+....+...++..+...++.+..|++.||+++|+ .+.++..+.++...+.... +....++..++.|++..
T Consensus 249 ~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~------~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~ 322 (396)
T TIGR00882 249 PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN------ALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVP 322 (396)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 344455677778888888999999999999998875 4455555555555443332 34445555666677766
Q ss_pred hHHHHHHHHHHHhhCCCcccchhhh-hhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHH
Q 047229 443 AQLSLLVTIISELFGLKHYSTLYNV-GSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 443 ~~~~~~~~~~~e~~~~~~~g~~~g~-~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 521 (599)
........+..+..+.+.+++..+. .+....+|+. +++.+.|.+.|. .+|+.+|.+.+++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~-~~~~l~G~l~~~---------------~G~~~~f~~~~~~~~i 386 (396)
T TIGR00882 323 FLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI-FLSTLAGNMYDS---------------IGFQGAYLVLGCIVLL 386 (396)
T ss_pred HHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH-HHHHhHHHHHHh---------------cccHHHHHHHHHHHHH
Confidence 5555556677888888888887776 4667788876 899999999998 3589999998888777
Q ss_pred HHHHHHH
Q 047229 522 ACIVSII 528 (599)
Q Consensus 522 ~~i~~~~ 528 (599)
..++..+
T Consensus 387 ~~~~~~~ 393 (396)
T TIGR00882 387 FTLISVF 393 (396)
T ss_pred HHHHHHH
Confidence 6666544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=232.29 Aligned_cols=336 Identities=12% Similarity=0.025 Sum_probs=220.6
Q ss_pred HhhHHHHHhHhCCCHH--HHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHH
Q 047229 48 ALYSNDIKSSLGYDQT--TLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVW 124 (599)
Q Consensus 48 ~~~~~~l~~~~~~s~~--~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (599)
..+.+.+..+++.+.+ ..+++.+.+.++.++ ++++|+++||+|||++++++.++..++.++..+. ... ++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~--~~~---~~~~ 104 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLA--YYL---GWFW 104 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHH--HHH---ccHH
Confidence 3444556666766544 357767777777654 8999999999999999998887666655443322 112 5689
Q ss_pred HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCC---------ChHHHHHHH-
Q 047229 125 QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD---------NTKALILLL- 193 (599)
Q Consensus 125 ~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~---------~~~~~~~~~- 193 (599)
.+++.|+++|++.+...++...++.+++| ++|++++|+...+..+|.++++.+++.+... .++.+.++.
T Consensus 105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (1146)
T PRK08633 105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV 184 (1146)
T ss_pred HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence 99999999999999999999999999997 5699999999999999999998887766532 001111000
Q ss_pred HHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhh
Q 047229 194 ACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAV 273 (599)
Q Consensus 194 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (599)
.....++.+ ++.. .
T Consensus 185 ~~~~~~~~~------------------------------------------------------------~~~~------~ 198 (1146)
T PRK08633 185 LLAVAVLGL------------------------------------------------------------IFAY------R 198 (1146)
T ss_pred HHHHHHHHH------------------------------------------------------------HHHh------c
Confidence 000000000 0000 0
Q ss_pred hhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhh
Q 047229 274 IKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAA 353 (599)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 353 (599)
.++.++ .. +... +. ......+.....++.+++++.++...+..++.......+
T Consensus 199 ~~~~~~-~~--------------~~~~---~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (1146)
T PRK08633 199 LPKVPA-AA--------------PEVF---DK---------KKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLA 251 (1146)
T ss_pred CcCCCC-CC--------------cccc---cc---------cccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 0000 00 000000111123566778888887766666555555556
Q ss_pred hcchHHHHHH-cCCCCc-chhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhH
Q 047229 354 IDNMGQIGKA-LGYPTH-SIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSL 430 (599)
Q Consensus 354 ~~~~~~~~~~-~g~~~~-~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 430 (599)
..+++.++++ +|++.. ..+++.+..+++.+++.++.|++.||+++++ .+.++.++++++.+++... +....
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG------LVPLGALGLALSLFLLPTAPSLASV 325 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc------chhHHHHHHHHHHHHHHHhhhHHHH
Confidence 6667777765 699888 8889999999999999999999999987654 3334444444444444332 33445
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHH
Q 047229 431 YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLY 488 (599)
Q Consensus 431 ~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~ 488 (599)
.+..+++|++.+...+...+++.+..|++.+|+++|+.++...++.. +++.+++.+.
T Consensus 326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~-~~~~~~~~l~ 382 (1146)
T PRK08633 326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML-LFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 56677888999888888889999999999999999999988888864 5555555443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=203.24 Aligned_cols=428 Identities=13% Similarity=0.074 Sum_probs=255.5
Q ss_pred HHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHH
Q 047229 46 MFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVW 124 (599)
Q Consensus 46 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (599)
..+...+.+..|+|-+ ....|+++...++... .++.|+++|.||||..++++.++..+|.++.+.+ +|..
T Consensus 62 ~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--------~~~~ 132 (599)
T PF06609_consen 62 LPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--------QNMN 132 (599)
T ss_pred ccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--------CcHH
Confidence 3456678899999964 7778877777777755 8899999999999999999999999998876433 8899
Q ss_pred HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHH
Q 047229 125 QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACL-PTIVPI 202 (599)
Q Consensus 125 ~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~ 202 (599)
.++.+..+.|+|.|.... ....++|..| |.|+...++.....-....+++.+...+.....|+|.+...++ ..+..+
T Consensus 133 ~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 133 TFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 999999999999887654 4556889998 4588777766655544444555666555544555554444333 333222
Q ss_pred HhhhccccccccC----Ccchh---hhHHHHHHHHHHHHHHHHHHHHHh-cc--cccCchhhhHHHHHHHHHHhhcchhh
Q 047229 203 VFIPTIRIIKIAR----PENEL---KVFHSFLYILLVLAGFIMVTIIIQ-NK--LRFTRSEYIATALVVVVLSLFIPLAA 272 (599)
Q Consensus 203 ~~~~~i~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~~~~~~ 272 (599)
+.+++-+++++.+ +...+ ++++..+.++...+..+++..+.- .. ..|.+.......++- ..++..+
T Consensus 212 l~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG--~~~Lv~F-- 287 (599)
T PF06609_consen 212 LIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIG--FVLLVAF-- 287 (599)
T ss_pred HHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHH--HHHHHHH--
Confidence 3233333332211 11112 234444444444444333333321 11 223333332222211 1111111
Q ss_pred hhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcc-hhHHHHHHHHHhhhcchh
Q 047229 273 VIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFS-IDMLILFTATTCSIGGAL 351 (599)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 351 (599)
.+.+.. . . .++..-..+++|+ |.+...++..++....++
T Consensus 288 ~~wE~~---~----------------------------------~---~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~ 327 (599)
T PF06609_consen 288 VVWEWF---G----------------------------------A---PKDPLFPHRLFKDRRGFAALLVISFISGMNFF 327 (599)
T ss_pred HHhhhh---c----------------------------------c---CCCCcCCHHHhccchHHHHHHHHHHHHHHHHH
Confidence 111110 0 0 0011122567887 456665566655544455
Q ss_pred hhhcchHHHHHHc-CCCC---cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh--
Q 047229 352 AAIDNMGQIGKAL-GYPT---HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-- 425 (599)
Q Consensus 352 ~~~~~~~~~~~~~-g~~~---~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-- 425 (599)
....++|+..... +.++ ...+......+++..+|.++.|.+.-+++|- ++.+..+.+++.+..-.+...
T Consensus 328 s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~-----Kw~li~~~~~~ta~~Gama~~~~ 402 (599)
T PF06609_consen 328 SVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI-----KWQLIFGSVLMTAFCGAMAAVRP 402 (599)
T ss_pred HHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHHHccC
Confidence 5556666665543 4444 2566777788888889999999998877533 255556665655543333332
Q ss_pred -hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhh----------
Q 047229 426 -VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALK---------- 494 (599)
Q Consensus 426 -~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~---------- 494 (599)
+....+...++.|++.|.........+.-..|+++.|++.|+......+|+. ++..+...++.+.-.+
T Consensus 403 ~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGs-Ig~aIy~~I~~n~~~~~l~~~v~~a~ 481 (599)
T PF06609_consen 403 DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGS-IGYAIYNAIFTNKLPKELPKYVAPAA 481 (599)
T ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 2334456667778888887777777777788999999999999888877776 5555555544331000
Q ss_pred ------------------cCC-------CC-------------ccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 495 ------------------QGK-------GG-------------LNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 495 ------------------~~~-------~~-------------~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+. ++ ++.+. .+|++.|+....+.+++.+.++++..-++
T Consensus 482 ~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa-~ay~~V~~~siaFG~vaiiaa~fl~d~~~ 558 (599)
T PF06609_consen 482 LAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYA-HAYRYVYYSSIAFGVVAIIAALFLGDIDK 558 (599)
T ss_pred HhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 000 00 00011 36899999999988888888877754443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-24 Score=204.45 Aligned_cols=426 Identities=12% Similarity=0.058 Sum_probs=248.6
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHh-C-------CCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSL-G-------YDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIV 94 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~-~-------~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~ 94 (599)
++....+.++-...+..+. .++.+.+.|-+...| | .++...+.+.....+|.++ |+++|++.||+|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 3444433333333333344 677777777665543 2 4455566789999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHH
Q 047229 95 LLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAI 173 (599)
Q Consensus 95 ~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i 173 (599)
+...+++..++++++++...... ...-.++++.+|++.|+|.|.-||.+..+.+|... ++||..++.+.+..++|.+.
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~-~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTS-PLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCC-CcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 99999999999886655544333 11236678889999999999999999999999996 56999999988777777666
Q ss_pred HHHHHHHhc---C----C--------ChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHH
Q 047229 174 MTQIYHAVN---G----D--------NTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIM 238 (599)
Q Consensus 174 ~~~i~~~~~---~----~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (599)
++.+...+. . . ..|+..+-++.+|.+..+..=..+
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M------------------------------ 245 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKM------------------------------ 245 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcC------------------------------
Confidence 654433221 0 0 012222222222222211100000
Q ss_pred HHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhch-hhhhhhhhhc-cCCCCccccccccchhhhcccC
Q 047229 239 VTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGN-KLQALDAHYD-QAIPALNVKTNFLTLFSLKNVS 316 (599)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 316 (599)
++.+++... +.+......| .++.+.+.+++ +.. +..
T Consensus 246 -------------------------------------~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~----~~~-~~~ 283 (538)
T KOG0252|consen 246 -------------------------------------PETARYTALVSKKLKQAAGDMKKVLSVDIEAE----STA-ESD 283 (538)
T ss_pred -------------------------------------CcchhHHHHhhcCHhhhhhccccccccccchh----hcc-ccC
Confidence 000000000 0000000000 00000000000 000 011
Q ss_pred CCCCCCCChhHHHhhcch---hHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhh--------hHHHHHHH-HHH
Q 047229 317 KKPERGDDYALLQAIFSI---DMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIAS--------FISLISIW-NFL 384 (599)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~i~-~~i 384 (599)
.++++.....+.+.+..+ .........|+.-.+.+..-.+...+++..|+.+.+... ...+...+ .+.
T Consensus 284 ~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vP 363 (538)
T KOG0252|consen 284 VPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVP 363 (538)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCC
Confidence 111111111233333332 223333455555555555555667777777776655444 11222233 334
Q ss_pred HHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHH-HHHhhhHHHHHHHHHHHhhCC
Q 047229 385 GRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVH-----NSLYFASIII-GFCLGAQLSLLVTIISELFGL 458 (599)
Q Consensus 385 g~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~l~-g~~~g~~~~~~~~~~~e~~~~ 458 (599)
|..+..+++|++|||+ ....++.++.+..+.+..... ....+...+. -++.-+.......+.+|.||.
T Consensus 364 Gyw~tv~~id~iGRk~------iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 364 GYWFTVYFIDIIGRKY------IQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred ceeEEEEEeehhhhHH------HHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 7777888999999885 677788888777666554322 1222222222 333334445566789999999
Q ss_pred CcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 047229 459 KHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQ 538 (599)
Q Consensus 459 ~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~ 538 (599)
+.||+.+|+....+-+|++ ++...+..+.++. .+. ..+++.+|++.+++++++.+..+++. +++++..
T Consensus 438 rvR~t~hGIsAA~GK~GAi-vg~~~F~~~t~~~-yp~---------~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~l 505 (538)
T KOG0252|consen 438 RVRSTCHGISAASGKAGAI-VGAFGFLYLTDHN-YPP---------NIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSL 505 (538)
T ss_pred HHhhhhhhHHHHhccchHH-HHHHHhhHhhhcc-CCc---------cccchHHHHHHHHHHHHhHheeEEee-cccccCH
Confidence 9999999999999999976 7776676666642 000 14689999999999999888887776 8877665
Q ss_pred ccc
Q 047229 539 GDI 541 (599)
Q Consensus 539 ~~~ 541 (599)
+++
T Consensus 506 eei 508 (538)
T KOG0252|consen 506 EEI 508 (538)
T ss_pred HHh
Confidence 443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=211.71 Aligned_cols=387 Identities=15% Similarity=0.094 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccc
Q 047229 63 TTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPN 141 (599)
Q Consensus 63 ~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~ 141 (599)
.+.+|+.+...++... ++++|+++|++|||++++++.+++.+|+++++++ +|+++++++|+++|+|.|...
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a--------~~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA--------PSWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHhccchhhhh
Confidence 4558988888888866 8899999999999999999999999999988766 789999999999999999999
Q ss_pred hhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHhhhccccccccCCcc
Q 047229 142 TGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGD--NTKALILLLACLPTIVPIVFIPTIRIIKIARPEN 218 (599)
Q Consensus 142 ~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 218 (599)
.....+++|..|+ .||...+..+....+|..++ .+.+...++ .+|++.+.+..+|.++..++++++++.|+.--.
T Consensus 161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~- 238 (513)
T KOG0254|consen 161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE- 238 (513)
T ss_pred hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-
Confidence 9999999999985 69999999999998776666 444444443 367788888888887777776666644431000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCC
Q 047229 219 ELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIP 298 (599)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (599)
..+.. +.+..+......++.
T Consensus 239 -~g~~~-----------------------------------------------------------~a~~~l~~l~g~~~~ 258 (513)
T KOG0254|consen 239 -KGRLE-----------------------------------------------------------EAKRSLKRLRGLSPE 258 (513)
T ss_pred -cCChH-----------------------------------------------------------HHHHHHHHHhCCCCc
Confidence 00000 000000000000000
Q ss_pred CccccccccchhhhcccCCCCCCCCChhHHHh----hcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhh
Q 047229 299 ALNVKTNFLTLFSLKNVSKKPERGDDYALLQA----IFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASF 374 (599)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 374 (599)
+.+.+.+........+..... .+..+.++ .+++.+....+..+.+........++.+.+++..|.+... ...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~ 334 (513)
T KOG0254|consen 259 DVEVELELLKIKLLVEAEVAE---GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLA 334 (513)
T ss_pred chHHHHHHHHHHHHHhhhccc---ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHH
Confidence 000000000000000000000 00012222 2333444555666666666677788888888888876444 555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh----h---------hhHHHHHHHHHHH-
Q 047229 375 ISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV----H---------NSLYFASIIIGFC- 440 (599)
Q Consensus 375 ~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~~i~~~l~g~~- 440 (599)
..+.++.+.++..++.++.||+|||+ ++..+...+.++.+++.... . ....+..+++-..
T Consensus 335 ~~~~~~v~~~~t~~~~~lvd~~gRr~------lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f 408 (513)
T KOG0254|consen 335 SIILGVVNFLGTLVATYLVDRFGRRK------LLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSF 408 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHH------HHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHH
Confidence 67778888999999999999998886 67777777777766554211 0 1112222222222
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHH
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATF 520 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 520 (599)
..+..++...+.+|.+|.+.|+.+.++......+...++. .......+. .+....|....+++.
T Consensus 409 ~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~-~~~~~~~~~---------------~~~~~~f~~f~~~~~ 472 (513)
T KOG0254|consen 409 AIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS-FFFPFITEA---------------LGIGGTFGYFGGICL 472 (513)
T ss_pred hcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHh---------------ccccchHHHHHHHHH
Confidence 2222344557889999999999999998887777765432 111112111 112345565566666
Q ss_pred HHHH-HHHHHHhhhcccccccccccc
Q 047229 521 FACI-VSIILVLRTKNFYQGDIYNKF 545 (599)
Q Consensus 521 i~~i-~~~~~~~~~~~~~~~~~~~~~ 545 (599)
+..+ ...++.+++|.++.+++.+..
T Consensus 473 ~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 473 LSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred HHHHHHheEEcccCCCCcHHHHHHHH
Confidence 6666 677788899988776554433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-20 Score=194.89 Aligned_cols=424 Identities=12% Similarity=0.051 Sum_probs=238.0
Q ss_pred HHHH-HhhHHHHHhHhCCCHHHHHHHHHHH-HhHhhhhhhhhhhhcc-cCChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 047229 44 SYMF-ALYSNDIKSSLGYDQTTLNLVSFFK-DLGGNLGVLAGLTYEV-APPWIVLLSGSIMNFFGFFMIWLSVSHRFGAK 120 (599)
Q Consensus 44 ~~~~-~~~~~~l~~~~~~s~~~~~~~~~~~-~~~~~~~~~~G~l~Dr-~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~ 120 (599)
.|.. +.+..++.+++|++.++.+++...+ .+.+...+++|+++|| +|||+++++|.+++.++++.++++
T Consensus 30 ~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-------- 101 (489)
T PRK10207 30 YYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-------- 101 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--------
Confidence 4433 4556677889999999999965444 4555668899999999 999999999999999998877544
Q ss_pred hh-HHHHHHHHHHHhccccccchhHHHHHhhcCC-C--CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 047229 121 PH-VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-E--SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACL 196 (599)
Q Consensus 121 ~~-~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~--~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~ 196 (599)
++ ...++++|+++|+|.|...+....++.+.|| + +|+++.++...+.++|+.+++.+++.+.+..+|++.+++..+
T Consensus 102 ~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 102 LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 22 2335579999999999999999999999996 3 357789999999999999998888888765556655555433
Q ss_pred HHHHHHHhhhccccccccCC-cchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhh
Q 047229 197 PTIVPIVFIPTIRIIKIARP-ENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIK 275 (599)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (599)
..++.++.....+...++.+ ...+.+.+..+.+....+...++..... ..+..+........+. .+....+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~i~~~~f~~ 255 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW-LMHNVEVANLVLIVLS-----IVVTIIFFR 255 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHH-----HHHHHHHHH
Confidence 33333333333332221110 1111112211111111111111111100 0000000000000000 001111111
Q ss_pred hhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHH--HHhhhcchhhh
Q 047229 276 QELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTA--TTCSIGGALAA 353 (599)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~ 353 (599)
++. + . .+.+|+|.+....+. ..+........
T Consensus 256 ~~~--------------------------------------~-~--------~~~~r~r~~~~~~l~~~~~~f~~~~~q~ 288 (489)
T PRK10207 256 EAF--------------------------------------K-L--------DKTGRNKMFVAFVLMLEAVVFYILYAQM 288 (489)
T ss_pred HHh--------------------------------------c-C--------CHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 100 0 0 023344443322211 22222222223
Q ss_pred hcchHHHHHH-cCCCC----cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhcc-CCchHHHHHHHHHHHHHHHHHH----
Q 047229 354 IDNMGQIGKA-LGYPT----HSIASFISLISIWNFLGRIVAGFASEIFLAKYK-VPRPLLLTLVILFSCIGYLLIA---- 423 (599)
Q Consensus 354 ~~~~~~~~~~-~g~~~----~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~~~~~~---- 423 (599)
.+.++.+.++ .+.+. ...+.+.++..+..++..++.+++.||+++|+. .+...-+.++.++.+++++.+.
T Consensus 289 ~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~ 368 (489)
T PRK10207 289 PTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGM 368 (489)
T ss_pred ccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555553 22211 112333344456666778888999999988752 2222233455555555543221
Q ss_pred -H------hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcC
Q 047229 424 -F------AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG 496 (599)
Q Consensus 424 -~------~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~ 496 (599)
. .+.+++....++.|++.+...+....++.+..|++.+|.+.|+.++..++|+. ++..+.+..... .+.
T Consensus 369 ~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~-lg~~l~~~~~~~-~~~-- 444 (489)
T PRK10207 369 WFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL-LGGYVATFTAVP-DNI-- 444 (489)
T ss_pred hhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccc-ccc--
Confidence 1 11334556778889999999999999999999999999999999998888876 555444433110 000
Q ss_pred CCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 497 KGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 497 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.++.- ....|...|...++.++++.++.+++.++-+
T Consensus 445 -~~~~~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~ 480 (489)
T PRK10207 445 -TDPLE-TLPVYTNVFGKIGLVTLGVAVVMALMVPWLN 480 (489)
T ss_pred -ccchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0013667777777776666666655544433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=227.29 Aligned_cols=331 Identities=11% Similarity=-0.030 Sum_probs=216.8
Q ss_pred HHHhHhCCCHHH-HHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 047229 53 DIKSSLGYDQTT-LNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYM 130 (599)
Q Consensus 53 ~l~~~~~~s~~~-~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r 130 (599)
.+.++.+.+... .++..+.+.+.. ++++++|+++||||||+++........+........ ... +++++++++|
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~--~~~---~s~~~l~~~~ 115 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYG--FHL---NSVPLLFAAL 115 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH--HHH---hhHHHHHHHH
Confidence 344445444444 556666666666 459999999999999997633221111111111111 111 5799999999
Q ss_pred HHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhccc
Q 047229 131 LIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIR 209 (599)
Q Consensus 131 ~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 209 (599)
+++|++.++..|+...++.+++| ++|++++|+...+.++|.++++++++.+....+|++.++...+..++.++..+.++
T Consensus 116 ~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1140)
T PRK06814 116 FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIP 195 (1140)
T ss_pred HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999997 56999999999999999999999998876644333333222111111111000000
Q ss_pred cccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhh
Q 047229 210 IIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQAL 289 (599)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (599)
+.+
T Consensus 196 ------------------------------------------------------------------~~~----------- 198 (1140)
T PRK06814 196 ------------------------------------------------------------------KTG----------- 198 (1140)
T ss_pred ------------------------------------------------------------------CCC-----------
Confidence 000
Q ss_pred hhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCC
Q 047229 290 DAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPT 368 (599)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 368 (599)
+++.. .. ......+.....++.+.+++.+|...+..++.......+..++|.|+++ +|.++
T Consensus 199 -------~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~ 260 (1140)
T PRK06814 199 -------NAAPD--LK---------IDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDE 260 (1140)
T ss_pred -------CCCCC--Ce---------eccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCch
Confidence 00000 00 0000000011245677888989888877776666666666788888877 59999
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH---------------------hhh
Q 047229 369 HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF---------------------AVH 427 (599)
Q Consensus 369 ~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 427 (599)
..++.+.+..+++.++|.++.|++.|+..+++. +..+.++..+..+.+.. .+.
T Consensus 261 ~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1140)
T PRK06814 261 NVATLFLAVFSVGVAVGSFLASKLSEGRITLLY------VPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHG 334 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee------ehHHHHHHHHHHHHHHhcccccccccccccchhhhhccccc
Confidence 999999999999999999999999987654431 11122222221111111 223
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 428 NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 428 ~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
+.+.+..+++|++.+...+...+++.+.+|++.+|+++|+.++...++.. +++.+.|.+.+.
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~-ig~~~~g~l~~~ 396 (1140)
T PRK06814 335 WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMV-AGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 34556677789999988888999999999999999999999998888865 888888888764
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=187.02 Aligned_cols=424 Identities=12% Similarity=0.082 Sum_probs=259.0
Q ss_pred hhhHHHHHHHHHHHH-hhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMS-VNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~-~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
+.+|..+..+..-.. -..-....+.+.|.+.+..+.+..|...++.....+..+ +..+|.+.|++|||+.+.+..+..
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 345655443332222 223344557778888999999999999999999999977 779999999999999998877766
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.+..++ .+ .++|+..++++|.+.|+|.|. .|....+-.+.-| .+|+.-+-.. ..+.+|.++...+....
T Consensus 154 ~v~~~i-----s~---~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~v 223 (528)
T KOG0253|consen 154 GVFGVI-----SG---ASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGV 223 (528)
T ss_pred HHHHHh-----hc---CCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHH
Confidence 554332 23 338999999999999999998 7777777778777 4677766666 78889999888888887
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHH
Q 047229 182 NGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVV 261 (599)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (599)
.....|+|+++....|..+...+.+++.+.|+ |+.. ....+.+...
T Consensus 224 m~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpR---------f~~~-----------------------~G~~~kAlet-- 269 (528)
T KOG0253|consen 224 MSNFGWRYLLFTSSTPLMFAARFLVWVYESPR---------FYLA-----------------------KGDDYKALET-- 269 (528)
T ss_pred HHhhhHHHHHHHHHhHHHHHHHHHhhcccCcc---------hhhh-----------------------cCChHHHHHH--
Confidence 77778888888888888887777777765544 2200 0000000000
Q ss_pred HHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhh----cchhHH
Q 047229 262 VVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAI----FSIDML 337 (599)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~ 337 (599)
+++..+.++ ++-++.. .+....++. ++|+ .+.++.+.+..++...+..+++ |... .
T Consensus 270 ------------L~kiArmNg--~qlplgv--l~~s~~~~~--e~e~-~~~~~~~~~a~ke~rg~~~nLlsp~lrktt-l 329 (528)
T KOG0253|consen 270 ------------LHKIARMNG--KQLPLGV--LESSAIDRQ--EQEE-SDLDDSKSSAAKEVRGGTTNLLSPKLRKTT-L 329 (528)
T ss_pred ------------HHHHHHhcC--CCCCcce--eeeehhhhh--hhhh-hchhhhhhccccccccchHhhcChHHHHHH-H
Confidence 000000000 0000000 000000000 0000 0000011111111111222222 2222 2
Q ss_pred HHHHHHHhhhcchhhhhcch-----------------HHHHHH-cCCCCcchhhh--HHHHHHHHHHHHHHhhhhhhhhh
Q 047229 338 ILFTATTCSIGGALAAIDNM-----------------GQIGKA-LGYPTHSIASF--ISLISIWNFLGRIVAGFASEIFL 397 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-~g~~~~~~~~~--~~~~~i~~~ig~~~~g~l~dr~g 397 (599)
+++..+|.+.+..++.+-.. |+..+. ..-.......+ ..+.....+.|.++.+++.||+|
T Consensus 330 llw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlG 409 (528)
T KOG0253|consen 330 LLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLG 409 (528)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhc
Confidence 23333333333333222211 111111 01111111111 34556788899999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhh
Q 047229 398 AKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGS 476 (599)
Q Consensus 398 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~ 476 (599)
||+ .++.+.++.++..+++... +.....+..+..-++..+.+...+.|.+|++|...|+++.|.+.....+|+
T Consensus 410 RKk------TMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIgg 483 (528)
T KOG0253|consen 410 RKK------TMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGG 483 (528)
T ss_pred chh------HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhh
Confidence 987 6677777777666555443 333444445555677777788889999999999999999999999999998
Q ss_pred hHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047229 477 YIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNF 536 (599)
Q Consensus 477 ~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~ 536 (599)
+ +.|.++ ...+. +-..+..+.+++++++.+.+.++..++|.+
T Consensus 484 I-~~p~iA-~~~e~----------------s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 484 I-FSPVIA-MRAEL----------------STSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred h-hhhHHH-HHhcc----------------ceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 6 888776 33332 245566778888889999998898888764
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-20 Score=193.08 Aligned_cols=355 Identities=12% Similarity=0.016 Sum_probs=213.9
Q ss_pred hhhHHH-HHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhccc-----CChH-HHHHHHHHHHHHHHHHHHHH
Q 047229 41 NGSSYM-FALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVA-----PPWI-VLLSGSIMNFFGFFMIWLSV 113 (599)
Q Consensus 41 ~g~~~~-~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~-~~~ig~~~~~~g~~~~~~~~ 113 (599)
-|..+. .....|.+.++.|+|.++++++...... .++++++|+++||+ |||| .+.++.++.+++...+++.
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~- 88 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC- 88 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc-
Confidence 344333 3456677788889999999998666554 56799999999999 8876 6777777776665544322
Q ss_pred hccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCC-ChHHHHH
Q 047229 114 SHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGD-NTKALIL 191 (599)
Q Consensus 114 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~-~~~~~~~ 191 (599)
.. .++++.+++..++.++..+...++...++.+++|+ +|+++.++...+.++|.++++.+...+.+. ..|+..+
T Consensus 89 -~~---~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f 164 (402)
T PRK11902 89 -PP---HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY 164 (402)
T ss_pred -Cc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence 11 14577788888888888888888899999999985 599999999999999999988877666542 1222211
Q ss_pred -HHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcch
Q 047229 192 -LLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPL 270 (599)
Q Consensus 192 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (599)
+.+.... +..+..
T Consensus 165 ~i~a~~~l-~~~l~~----------------------------------------------------------------- 178 (402)
T PRK11902 165 LLMAGLML-AGALTT----------------------------------------------------------------- 178 (402)
T ss_pred HHHHHHHH-HHHHHH-----------------------------------------------------------------
Confidence 1111110 000000
Q ss_pred hhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcch
Q 047229 271 AAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGA 350 (599)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 350 (599)
.. .+++++ + + ++ +++.+++....+++++|+|.++.+.+..++.....
T Consensus 179 -~~-~~e~~~----------------~---~--~~----------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~ 225 (402)
T PRK11902 179 -LW-APEPEV----------------P---A--RP----------PRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGD 225 (402)
T ss_pred -Hh-cCCCcc----------------c---c--cc----------cchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHH
Confidence 00 000000 0 0 00 00000011224677899999887776655544332
Q ss_pred hhhhcchHHHH-HHcCCCCcchhhhHHHHH-HHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH---HHHHHh
Q 047229 351 LAAIDNMGQIG-KALGYPTHSIASFISLIS-IWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY---LLIAFA 425 (599)
Q Consensus 351 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~ 425 (599)
.....+.++++ ++.|+++.+.+.+....+ ++..++.+++|++.||+++|+ .+..+..+.++.. ..+...
T Consensus 226 ~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~------~l~~~~~~~~l~~l~~~~~~~~ 299 (402)
T PRK11902 226 AFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR------SLMLFGVLQAVSNLGYWVLAVT 299 (402)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 22222333444 447999888888876655 468999999999999998775 2333333323222 222222
Q ss_pred -hh-hhHHHHHHH----HHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCC
Q 047229 426 -VH-NSLYFASII----IGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGG 499 (599)
Q Consensus 426 -~~-~~~~i~~~l----~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~ 499 (599)
+. ....+...+ .|++.+...+....++.+.+| ++..++......++.. .++.+.|.+.|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~~~G~l~~~--------- 365 (402)
T PRK11902 300 PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQYALLSALASVGRV-YVGPTSGYLVEA--------- 365 (402)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------
Confidence 22 222333323 344444445555555555555 4445555555566665 334579999998
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHH
Q 047229 500 LNCIGARCYRVAFVTISAATFFACIVS 526 (599)
Q Consensus 500 ~~~~~~~~~~~~f~~~~~~~~i~~i~~ 526 (599)
.+|+..|.+.+++++++.++.
T Consensus 366 ------~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 366 ------YGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred ------hChHHHHHHHHHHHHHHHHHH
Confidence 458888888887777765554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=197.87 Aligned_cols=327 Identities=11% Similarity=-0.022 Sum_probs=206.9
Q ss_pred HHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhccc-----CChHHH-HHHHHHHHHHHHHHHHHHhccCCC
Q 047229 46 MFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVA-----PPWIVL-LSGSIMNFFGFFMIWLSVSHRFGA 119 (599)
Q Consensus 46 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~~~-~ig~~~~~~g~~~~~~~~~~~~~~ 119 (599)
..+...|.+.+|+|+|.+++++......... ..+++|++.||+ ||||.+ +.+.++.++....++ +.. .
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~--~~~---~ 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS--FLV---P 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH--cCC---c
Confidence 3466788899999999999999765543333 499999999998 899975 555665555533332 211 1
Q ss_pred ChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047229 120 KPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPT 198 (599)
Q Consensus 120 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 198 (599)
..+.+.+....++.+++.+...++...++.|++| ++|+++.++...+..+|.++++.+...+.+....
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~----------- 148 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA----------- 148 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----------
Confidence 2456667777788888888888888999999997 6799999999999999999988887655432110
Q ss_pred HHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhh
Q 047229 199 IVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQEL 278 (599)
Q Consensus 199 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (599)
+...+.+|+..|... ++..++. ....+...+++
T Consensus 149 -------------~~~~~~~wr~~f~i~-------ai~~l~~---------------------------~~~~~~~~~e~ 181 (356)
T TIGR00901 149 -------------NTGLITLWGYIFFWT-------ALLILPG---------------------------LLVTLFLAKEP 181 (356)
T ss_pred -------------ccccccccHHHHHHH-------HHHHHHH---------------------------HHHHHHhccCC
Confidence 000011122222100 0000000 00000000000
Q ss_pred hhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchh---HHHHHHHHHhhhcchhhhhc
Q 047229 279 NIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSID---MLILFTATTCSIGGALAAID 355 (599)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~ 355 (599)
++.+ +. + ++.++.....++++++++. ++.+.+..++..........
T Consensus 182 ~~~~--------------~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (356)
T TIGR00901 182 QEDA--------------SV------P-----------KPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATV 230 (356)
T ss_pred Cccc--------------cc------c-----------hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0 0000001123566677765 66666665555555566677
Q ss_pred chHHHHHHcCCCCcchhhhHHHHH-HHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh---------
Q 047229 356 NMGQIGKALGYPTHSIASFISLIS-IWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA--------- 425 (599)
Q Consensus 356 ~~~~~~~~~g~~~~~~~~~~~~~~-i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 425 (599)
+++++.++.|+++.+.+......+ +...++.+++|++.||+++|+ .+..+.++.+++..++...
T Consensus 231 ~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (356)
T TIGR00901 231 LTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY------ALLLFGIVQALTNAGFVWLASNGHHDGI 304 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 788888888999988888877666 578899999999999999875 3344444444433322211
Q ss_pred ---hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccch
Q 047229 426 ---VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSP 473 (599)
Q Consensus 426 ---~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ 473 (599)
+........++.+++.+...+....+..|.+|++++|+.+|+.+...+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 305 TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 112244455566899999999999999999999999999998876543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=187.72 Aligned_cols=351 Identities=9% Similarity=0.002 Sum_probs=215.8
Q ss_pred HhhhhHHHHHhhHHHHHhHhCCCHHH-HHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 047229 39 SVNGSSYMFALYSNDIKSSLGYDQTT-LNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHR 116 (599)
Q Consensus 39 ~~~g~~~~~~~~~~~l~~~~~~s~~~-~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~ 116 (599)
+..-..-..+...|++.+++|+|.+| .|.+.+.+..++.. ++++|++.||+|.|+++.++.+..++.+++..++
T Consensus 37 F~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---- 112 (511)
T TIGR00806 37 FMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---- 112 (511)
T ss_pred HHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----
Confidence 33444566788899999999999999 88877776666654 9999999999999999999999998888777554
Q ss_pred CCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHH--HHH
Q 047229 117 FGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALI--LLL 193 (599)
Q Consensus 117 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~--~~~ 193 (599)
+++..+.+.|++.|++.|..+ +...++..||| ++|+++.|+..++..+|.++++++...+..-+|..+. ..+
T Consensus 113 ----~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~I 187 (511)
T TIGR00806 113 ----TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNII 187 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 679999999999999999999 99999999998 5699999999999999999999998884432332221 122
Q ss_pred HHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhh
Q 047229 194 ACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAV 273 (599)
Q Consensus 194 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (599)
.....+++++..++++.+++. -|.
T Consensus 188 sl~s~~~a~~~a~~LP~~~~s-------l~f------------------------------------------------- 211 (511)
T TIGR00806 188 SLVFMTFSVFLALFLKRPKRS-------LFF------------------------------------------------- 211 (511)
T ss_pred HHHHHHHHHHHHHhCCCCchh-------hhh-------------------------------------------------
Confidence 222333333333333311110 000
Q ss_pred hhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCC-----CCCChhHHHhhcchhHHHHHHHHHhhhc
Q 047229 274 IKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPE-----RGDDYALLQAIFSIDMLILFTATTCSIG 348 (599)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (599)
.+ .++.++....+.++.+ ++...+ ..+..+.. +.-...+++..+|+......+...+...
T Consensus 212 -~~-----~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~ 276 (511)
T TIGR00806 212 -NR-----LEDVRGALPCELDQMV--PGPGGK-------LEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSA 276 (511)
T ss_pred -cc-----ccccccccccccccCC--CCCccc-------cchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhh
Confidence 00 0000000000000000 000000 00000000 0011234455667665444443433333
Q ss_pred chhhhhcchHHHHHHcCCC-CcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-h
Q 047229 349 GALAAIDNMGQIGKALGYP-THSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-V 426 (599)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 426 (599)
..+-+.++.....+...-+ +..-|..-++..+.+.+..+..|++-.++.+. + ...+.+..++.+..++++... +
T Consensus 277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~---~-~l~l~v~s~~~~gll~~m~~t~~ 352 (511)
T TIGR00806 277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW---S-KLLIAVVSAIQAGLVFWMSQSHD 352 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh---H-HHHHHHHHHHHHHHhhhhhcccc
Confidence 3444555555555544221 22445555666777778888888875554211 1 123334444444444444444 3
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccch
Q 047229 427 HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSP 473 (599)
Q Consensus 427 ~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ 473 (599)
.+..++..++++..+....++...-+++....+..|..+|+.++...
T Consensus 353 Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl 399 (511)
T TIGR00806 353 IWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVAT 399 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHH
Confidence 45577888888888998888888888888888888999998775443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=209.47 Aligned_cols=298 Identities=11% Similarity=0.047 Sum_probs=187.4
Q ss_pred HHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhc--------
Q 047229 45 YMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSH-------- 115 (599)
Q Consensus 45 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~-------- 115 (599)
...+...++++++|+++.++.+++.+.+.++..+ .++.|++.||+|||+.+.+|.+++++|.+++++...-
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence 3457788999999999999999988888888765 8899999999999999999999999998887655200
Q ss_pred ------c-C---------C-----------------C--ChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccch
Q 047229 116 ------R-F---------G-----------------A--KPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVV 159 (599)
Q Consensus 116 ------~-~---------~-----------------~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~ 159 (599)
. . . . ...+..++++|+++|+|.+..++....++.|++| ++|+++
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 0 0 0 0 0135667789999999999999999999999997 569999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhcccccccc-CCcchhh--hHHHHHHHHHHHHHH
Q 047229 160 IGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRIIKIA-RPENELK--VFHSFLYILLVLAGF 236 (599)
Q Consensus 160 ~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~ 236 (599)
+++...+..+|..+++.+++.+.+.... .......+.. .+.++++ .|+ ..++ ..++.
T Consensus 210 ~~i~~~~~~iG~~lG~llgg~l~~~~~d-----------------~~~~~~~~~~l~~~dprWiGaWw-l~Fl--i~g~l 269 (633)
T TIGR00805 210 IGILESIAVFGPAFGYLLGSFCLQIYVD-----------------TGSVNTEDVILTPTDPRWIGAWW-IGFL--ICGGV 269 (633)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcccc-----------------cccCCCCCCCCCCCCccHHHHHH-HHHH--HHHHH
Confidence 9999999999999998887765531100 0000000000 0011111 111 1111 11111
Q ss_pred HHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccC
Q 047229 237 IMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVS 316 (599)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (599)
.++. .+++....++.++..+.++ .+...+ +..+. .+++ . ....
T Consensus 270 ~~l~--------------------------~v~l~~~p~~lp~~~~~~~---~~~~~~-~~~~~--~~~~---~--~~~~ 312 (633)
T TIGR00805 270 ALLT--------------------------SIPFFFFPKALPKEGKRVN---VDVHET-EKLEK--SEDK---S--RKKN 312 (633)
T ss_pred HHHH--------------------------HHHHHhCccccCCcccccc---hhhhhh-hcccc--cccc---c--chhh
Confidence 1110 1111111111111000000 000000 00000 0000 0 0000
Q ss_pred CCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHH-HHHHHHHHhhhhhh
Q 047229 317 KKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISI-WNFLGRIVAGFASE 394 (599)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i-~~~ig~~~~g~l~d 394 (599)
....+.....++++++||.++...+..++.......+..++|.++++ +|+++.+++.+.++..+ +..+|.+++|+++|
T Consensus 313 ~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~ 392 (633)
T TIGR00805 313 SDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMK 392 (633)
T ss_pred hhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheee
Confidence 00001112346789999999999988888888888888999999986 69999999999887776 56899999999999
Q ss_pred hhhhh
Q 047229 395 IFLAK 399 (599)
Q Consensus 395 r~g~r 399 (599)
|++.+
T Consensus 393 r~~~~ 397 (633)
T TIGR00805 393 KFKLN 397 (633)
T ss_pred eeccc
Confidence 99754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=187.65 Aligned_cols=410 Identities=15% Similarity=0.104 Sum_probs=266.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHH
Q 047229 21 LHLLDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSG 98 (599)
Q Consensus 21 ~~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig 98 (599)
.+..+|||+++++..+..+..+. ...|+....+..+.|+ +....-|++..+.+.++. ++++-|+.||+|-|...+++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 35778999999988888877766 5678888888999999 777777887777766654 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCChhHH--HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHH
Q 047229 99 SIMNFFGFFMIWLSVSHRFGAKPHVW--QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMT 175 (599)
Q Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~~--~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~ 175 (599)
..+..+|..+-..+...+. .+.++ ..+.+..+.+.++-.....+..+..-||| ++|..+..+-..+..+|.+++.
T Consensus 116 t~ln~iGa~Ir~iss~p~v--~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFV--PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHhhhccCccc--cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 9999999877655433322 13445 66678889998888888777888999995 7899999998888888888876
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhh
Q 047229 176 QIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYI 255 (599)
Q Consensus 176 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (599)
.+...+.+++ ++ .....+.+....+....+++..
T Consensus 194 llppilV~~~--------------------------~~--~~~~~~~~~~~f~~~~~l~~l~------------------ 227 (480)
T KOG2563|consen 194 LLPPILVPSS--------------------------KD--SEDNSWLFFTLFLGVECLAALL------------------ 227 (480)
T ss_pred hccceecCCC--------------------------CC--cchhHHHHHHHHHHHHHHHHHH------------------
Confidence 5544443321 00 0001111110000000000000
Q ss_pred HHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchh
Q 047229 256 ATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSID 335 (599)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (599)
+++....+++.+ |.+++... .+..+.....+.+++++|++
T Consensus 228 ------------l~l~~~~~~~~P-----------------~tPps~s~-----------~~~~~~~f~~si~~~~~n~~ 267 (480)
T KOG2563|consen 228 ------------LALVLFVFTKKP-----------------PTPPSASQ-----------AALQDASFPKSIKSCFKNRQ 267 (480)
T ss_pred ------------HHHHHHhcCCCC-----------------CCCCchhH-----------hhhhcCcHHHHHHHHHcCcc
Confidence 011111111100 11111000 00111224556889999999
Q ss_pred HHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 047229 336 MLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFS 415 (599)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 415 (599)
|.++.+.+....+.++.....+...+...|++...+|....+..+++++|..+.|.+.||.++-+ ....+.....
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk-----~~~~v~~~~~ 342 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK-----LTTLVLYLFA 342 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH-----HHHHHHHHHH
Confidence 99999888877776665555555444556898899999999999999999999999999986443 1223333333
Q ss_pred HHH-HHHHHHh----hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 416 CIG-YLLIAFA----VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 416 ~~~-~~~~~~~----~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
.++ +.+.... ....++....++|++..+..|+...+..|..-|...++..|+.++.+++.+. +-+++.+...+.
T Consensus 343 ~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~-~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 343 LVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGV-ILVFIMGILAED 421 (480)
T ss_pred HHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHH-HHHHHHHHHhhc
Confidence 333 2222111 1234666777889888888898888999988889999999999998888766 445555554444
Q ss_pred hhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047229 491 EALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNF 536 (599)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~ 536 (599)
..-+ .++...-+.+...++++.++..++++..||.
T Consensus 422 ~~~~-----------~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 422 LGPP-----------GNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred cCCC-----------CCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 2111 1133334444555666666666666655553
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-18 Score=182.96 Aligned_cols=407 Identities=12% Similarity=0.054 Sum_probs=234.2
Q ss_pred hHHHHHhH--hCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcc-cCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHH
Q 047229 50 YSNDIKSS--LGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEV-APPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQ 125 (599)
Q Consensus 50 ~~~~l~~~--~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr-~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 125 (599)
+...+.++ +|++..+.+++.+.+.+.. +..+++|+++|| +|||++++++.++..++.++++++ ++++.
T Consensus 33 L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--------~~~~~ 104 (475)
T TIGR00924 33 LAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--------IYPDL 104 (475)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--------ccHhH
Confidence 33344565 9999999999655555555 558899999999 899999999999999987766433 56778
Q ss_pred HHHHHHHHhccccccchhHHHHHhhcCCC----CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 126 MCLYMLIGANSQSFPNTGALVTCVKNFPE----SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 126 l~~~r~l~G~g~g~~~~~~~~~~~~~fp~----~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
+++.|++.|+|.|...+....++.+++|+ +|+++.++...+.++|..+++.+.+.+.+...+++.+....+..+++
T Consensus 105 ~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 88899999999999999999999999963 38889999999999999999999888876544555444433333333
Q ss_pred HHhhhccccc----cccCC-cc-hhhhH-HHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhh
Q 047229 202 IVFIPTIRII----KIARP-EN-ELKVF-HSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVI 274 (599)
Q Consensus 202 ~~~~~~i~~~----~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (599)
++...+.+.. |++++ .. +.... .....+...... ....... ..+... ..... ............
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~--~~~~~-~~~~~~~~~~~~ 255 (475)
T TIGR00924 185 LLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALAL-VFFCAWL-----MHHVVI--ANILL-MTVTLAVIIFFF 255 (475)
T ss_pred HHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHH-HHHHHHH-----HhccHH--HHHHH-HHHHHHHHHHHH
Confidence 3333333321 11111 00 11111 100000000000 0000000 000000 00000 000000000000
Q ss_pred hhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhh
Q 047229 275 KQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAI 354 (599)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (599)
+...+ + ..+ ..+-.|...+..+++...+.........
T Consensus 256 ~~~~~-----------------~--------------------~~~------~~~~~~~~~~l~l~~~~~~~~~~~~Q~~ 292 (475)
T TIGR00924 256 RLAFK-----------------P--------------------RLD------AVARNKMYAYIVLFLEAVVFWVLYAQMP 292 (475)
T ss_pred HHHHh-----------------c--------------------cCC------HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000 0 000 0000112223333333333333333333
Q ss_pred cchHHHHHH-cCCCC----cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHHHHHHHHHHHHHH----
Q 047229 355 DNMGQIGKA-LGYPT----HSIASFISLISIWNFLGRIVAGFASEIFLAKY-KVPRPLLLTLVILFSCIGYLLIAF---- 424 (599)
Q Consensus 355 ~~~~~~~~~-~g~~~----~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~---- 424 (599)
+.++.+.++ .+.+. ...+++.++..+.-++..++..++-.|+.||. ......-+.++.++.++++..+..
T Consensus 293 s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~ 372 (475)
T TIGR00924 293 TSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF 372 (475)
T ss_pred hHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555443 22221 12556667777777776666655555666542 112222235667777666655442
Q ss_pred ------hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCC
Q 047229 425 ------AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKG 498 (599)
Q Consensus 425 ------~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~ 498 (599)
.+.+++.+..++.+++.....|...+++.+..|++.+|+..|+..+...+|.. +++.+.....+.
T Consensus 373 ~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~-l~~~~~~~~~~~-------- 443 (475)
T TIGR00924 373 ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSL-LGGYLATFGAVP-------- 443 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc--------
Confidence 24556778888999999999999999999999999999999999988888876 666666555443
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 499 GLNCIGARCYRVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 499 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
.++...|...+++.++..++.+++.+.
T Consensus 444 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 444 -------QGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred -------cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 235666666666666666655555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-19 Score=184.49 Aligned_cols=422 Identities=11% Similarity=0.064 Sum_probs=229.3
Q ss_pred HHHHHh-hHHHHHhHhCCCHHHHHHHHHHHHhH-hhhhhhhhhhhcc-cCChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 047229 44 SYMFAL-YSNDIKSSLGYDQTTLNLVSFFKDLG-GNLGVLAGLTYEV-APPWIVLLSGSIMNFFGFFMIWLSVSHRFGAK 120 (599)
Q Consensus 44 ~~~~~~-~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~G~l~Dr-~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~ 120 (599)
.|.+.. +...+.+++|++.++.+++...+... ....+++|+++|| +|||++++++.++..+++++++++ .
T Consensus 37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~------~- 109 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS------G- 109 (500)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh------c-
Confidence 344433 44456789999999998855444433 3446799999999 599999999999999987766433 1
Q ss_pred hhHHHHHHHHHHHhccccccchhHHHHHhhcCCCC---ccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 047229 121 PHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPES---RGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLP 197 (599)
Q Consensus 121 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~---rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~ 197 (599)
++.+.+++.|+++|+|.|...+....++.++||++ |+.+.++...+.++|+.+++.+.+.+.+...|++.+....+.
T Consensus 110 ~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~ 189 (500)
T PRK09584 110 HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189 (500)
T ss_pred ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 23556778899999999998888889999999743 455788888888999999999998887765566655555443
Q ss_pred HHHHHHhhhcc-ccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhh
Q 047229 198 TIVPIVFIPTI-RIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQ 276 (599)
Q Consensus 198 ~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (599)
.+++++..... +..+++.+..+..+.+.........+...+.... ..... .... ....+. ...+..+. ...++
T Consensus 190 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~--~~~~~~-~~~~~~~~-~~~~~ 263 (500)
T PRK09584 190 MLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIA-TWLLH-NQEI--ARMALG-VVALGIVV-IFGKE 263 (500)
T ss_pred HHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHH-HHHHh-cchH--HHHHHH-HHHHHHHH-HHHHH
Confidence 33333222222 2222211111111111111111111111111000 00000 0000 000000 00000000 00000
Q ss_pred hhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcc
Q 047229 277 ELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDN 356 (599)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (599)
. .+. .+.-++ +.+..++.+ +....++.....
T Consensus 264 ~---------------------------------------~~~--------~~~~~~-~~~~~~~~~-~~~i~f~~~~~q 294 (500)
T PRK09584 264 A---------------------------------------FAM--------KGAARR-KMIVAFILM-LEAIIFFVLYSQ 294 (500)
T ss_pred H---------------------------------------hhc--------CHHHHH-HHHHHHHHH-HHHHHHHHHHHH
Confidence 0 000 000011 111111111 111112222233
Q ss_pred hHHHHHH---cCCCC------cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-
Q 047229 357 MGQIGKA---LGYPT------HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV- 426 (599)
Q Consensus 357 ~~~~~~~---~g~~~------~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~- 426 (599)
.+..+.. ...+. ...+++.++..+...+..++.+++-+|+++|. +....+.++.++.+++++.+....
T Consensus 295 ~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~ 372 (500)
T PRK09584 295 MPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAK 372 (500)
T ss_pred hccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333221 11111 12445556666666677777777767777664 344456777788888776654332
Q ss_pred ---------hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCC
Q 047229 427 ---------HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGK 497 (599)
Q Consensus 427 ---------~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~ 497 (599)
..+.....++.+++.+...|...+++.+..|++.+|...|+..+...+|+. ++ |.+.+....+...
T Consensus 373 ~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~-~~----g~~~~~~~~~~~~ 447 (500)
T PRK09584 373 FANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL-IA----GYVANLMAVPDNV 447 (500)
T ss_pred hcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHhcccccc
Confidence 235667788889999999999999999999999999999988877777765 33 3333221100000
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 498 GGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 498 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
.+.. ....++...|...++++++..++.+.+.++-+|
T Consensus 448 ~~~~-~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 448 TDPL-MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred ccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 001237788888887766666655555544443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-19 Score=188.35 Aligned_cols=360 Identities=13% Similarity=0.043 Sum_probs=236.8
Q ss_pred HhhHHHHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHH
Q 047229 48 ALYSNDIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQM 126 (599)
Q Consensus 48 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l 126 (599)
.+..+-+..+..-|+..++++.....+..+ +++++|.++||+.||++++.+-++..+..+.+.+.... ...+.+.+
T Consensus 30 ~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~---~~~~~~~L 106 (524)
T PF05977_consen 30 TVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF---GLLSPWLL 106 (524)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh---CcCCHHHH
Confidence 333445566677788999998888888875 59999999999999999999988877665544433222 22578899
Q ss_pred HHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFI 205 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (599)
++.-++.|++.+...|+-.+++.+..|+ +...+.++.....++.-+++|.+++.++...+..+.+.+..+..++.++.+
T Consensus 107 l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 107 LILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 578899998888888888887777765431111111111111100000000
Q ss_pred hccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchh
Q 047229 206 PTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNK 285 (599)
Q Consensus 206 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (599)
...+++.+
T Consensus 187 ------------------------------------------------------------------~~~~~~~~------ 194 (524)
T PF05977_consen 187 ------------------------------------------------------------------LRWKPPPP------ 194 (524)
T ss_pred ------------------------------------------------------------------HHcccccc------
Confidence 00010000
Q ss_pred hhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-c
Q 047229 286 LQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-L 364 (599)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 364 (599)
+++ . ..+...+.....++-+.++|......+..++.......+...+|.+.++ +
T Consensus 195 -----------~~~---~-----------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l 249 (524)
T PF05977_consen 195 -----------PSS---L-----------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVL 249 (524)
T ss_pred -----------ccc---c-----------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHh
Confidence 000 0 0000000111123334455655544443333333333444557777765 6
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhh
Q 047229 365 GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGA 443 (599)
Q Consensus 365 g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~ 443 (599)
|.++...|++.+..+++.++|.++.+++.+|+++++ ++..+.++.+++.+.+...+ .+...+..++.|++...
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~------lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~ 323 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR------LVLLASLLFALALLLLALSPSFWLALIALFLAGAAWII 323 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch------hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999888877765432 45556666666666655544 33455667777888888
Q ss_pred HHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHH
Q 047229 444 QLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFAC 523 (599)
Q Consensus 444 ~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 523 (599)
..+...+...+..|++.+|.+.++..+....+. .+|..+.|.+.|.. +.+.++.+.+++.+++.
T Consensus 324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~-~lGsll~G~la~~~---------------g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 324 ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM-PLGSLLWGFLADHF---------------GVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHh---------------CHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999987766664 48888999999983 46677777666555555
Q ss_pred HHHHHH
Q 047229 524 IVSIIL 529 (599)
Q Consensus 524 i~~~~~ 529 (599)
++....
T Consensus 388 ~~~~~~ 393 (524)
T PF05977_consen 388 LIALRF 393 (524)
T ss_pred HHHHHh
Confidence 554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=193.14 Aligned_cols=344 Identities=13% Similarity=0.046 Sum_probs=208.5
Q ss_pred hhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcc----cCChH-HHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 49 LYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEV----APPWI-VLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 49 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr----~G~r~-~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
.+.+.+.+++|+++.+++++.+...+.. +.+|+.|.++|| +|||| .++++.+.++++.++++... ... ....
T Consensus 21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~-~~~-~~~~ 98 (437)
T TIGR00792 21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP-DFS-ATGK 98 (437)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC-CCC-cchH
Confidence 3456678899999999999766666655 559999999998 67744 67777777777765553321 111 1122
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcC-C-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNF-P-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIV 200 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~f-p-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 200 (599)
...+++.+++.+++.+...++...+..+.. + ++|++..++...+..+|+.+.+.+...+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~---------------- 162 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSY---------------- 162 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 566677888888888877666667777776 3 5799999988877777776665443332210
Q ss_pred HHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 047229 201 PIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNI 280 (599)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (599)
+. ......+|+..+. ..++..++..+ + .....+++
T Consensus 163 -------~~--~~~~~~g~~~~~~-------i~~~l~~~~~~--------------------~------~~~~~~e~--- 197 (437)
T TIGR00792 163 -------FG--GGDDKFGWFMFAL-------VLALIGVVSLI--------------------I------CFFGTKER--- 197 (437)
T ss_pred -------hC--CCcccccHHHHHH-------HHHHHHHHHHH--------------------H------HHcCCEec---
Confidence 00 0000111111111 11111000000 0 00000100
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
+++. + .+++++......+++++++|.++.+.+..++............+++
T Consensus 198 ----------------~~~~--~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (437)
T TIGR00792 198 ----------------YSEI--P-----------KNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY 248 (437)
T ss_pred ----------------CCCC--C-----------cccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee
Confidence 0000 0 0000001112245778899999887776666554444333333444
Q ss_pred HHHc-CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHH
Q 047229 361 GKAL-GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA--VHNSLYFASIII 437 (599)
Q Consensus 361 ~~~~-g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~l~ 437 (599)
.+.. + ++...+.+..+..++.+++.++.++++||+|+|+ .+..+..+.+++.+.+... +.....+..++.
T Consensus 249 ~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (437)
T TIGR00792 249 FTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI------LFAGGILLMVLGYLIFFFAGSNLPLILVLIILA 321 (437)
T ss_pred EeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 3332 4 4455666677778999999999999999998775 4455555555555444332 223345556677
Q ss_pred HHHhhhHHHHHHHHHHHhhC-------CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhh
Q 047229 438 GFCLGAQLSLLVTIISELFG-------LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREA 492 (599)
Q Consensus 438 g~~~g~~~~~~~~~~~e~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~ 492 (599)
|++.+...+...++.+|..+ ++.+|..+|+.++...++.. +++.+.|.+.+..+
T Consensus 322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~-lg~~i~g~ll~~~G 382 (437)
T TIGR00792 322 GFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA-LAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 88888888888888888754 56789999999999999976 89999999988754
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=183.80 Aligned_cols=361 Identities=12% Similarity=-0.032 Sum_probs=216.6
Q ss_pred HHhhhhH-HHHHhhHHHHHhHhCCCHHHHHHHH--HHHHhHh-hhhhhh-hhhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 047229 38 MSVNGSS-YMFALYSNDIKSSLGYDQTTLNLVS--FFKDLGG-NLGVLA-GLTYEVAPPWIVLLSGSIMNFFGFFMIWLS 112 (599)
Q Consensus 38 ~~~~g~~-~~~~~~~~~l~~~~~~s~~~~~~~~--~~~~~~~-~~~~~~-G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~ 112 (599)
.+.-|.. .....+.|.+.++.|.+.++++.++ ....+.. +.+|+. ++..||+||||..+++..+..... ...+.
T Consensus 10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~-~~~~~ 88 (390)
T TIGR02718 10 YLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC-LASLA 88 (390)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH-HHHHH
Confidence 3445664 3345778888999999999999964 3334444 347777 557899999999766554322211 11111
Q ss_pred HhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHH-H
Q 047229 113 VSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKAL-I 190 (599)
Q Consensus 113 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~-~ 190 (599)
..... . ....+++...++.++..+...+..-.+..++.+ ++++...+....+..+|..+++.....+.+...|+. +
T Consensus 89 ~~~~~-~-~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f 166 (390)
T TIGR02718 89 LVGPD-V-AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAF 166 (390)
T ss_pred cCCcc-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 11111 1 113333444445555555555666666677776 446777777777777888888766555543322221 1
Q ss_pred HHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcch
Q 047229 191 LLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPL 270 (599)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (599)
+..+....+..+. .
T Consensus 167 ~~~a~l~~~~~~~-------------------------------------------------------------~----- 180 (390)
T TIGR02718 167 LLVACVPLASLVC-------------------------------------------------------------V----- 180 (390)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------H-----
Confidence 1111111100000 0
Q ss_pred hhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcch
Q 047229 271 AAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGA 350 (599)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 350 (599)
+...+++ +++ +++++....++++.+|+|.+|......++.....
T Consensus 181 -~~~~~~~------------------~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 224 (390)
T TIGR02718 181 -LWLKDRA------------------VAS-----------------PEAPLARRASLFRFFRRPLAWSLLALALLSAMTA 224 (390)
T ss_pred -HHcCCCC------------------cCc-----------------cccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence 0000000 000 0000011224678899998887777666666555
Q ss_pred hhhhcchHHHHHHcCCCCcchhhhHHHHHH-HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-HHHhh--
Q 047229 351 LAAIDNMGQIGKALGYPTHSIASFISLISI-WNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLL-IAFAV-- 426 (599)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i-~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 426 (599)
.....+.+.++++.|+++.+.+......++ ...++.++.|++.||+++|+ .+..+.++..+..+. .....
T Consensus 225 ~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~------~l~~~~~~~~~~~~~~~~~~~~~ 298 (390)
T TIGR02718 225 VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR------TFILGVGLAGSLALLWFAQAAFW 298 (390)
T ss_pred HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHcc
Confidence 556667788888899999999998887764 66788999999999998875 333333333222111 11111
Q ss_pred ----hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCC-CcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCcc
Q 047229 427 ----HNSLYFASIIIGFCLGAQLSLLVTIISELFGL-KHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLN 501 (599)
Q Consensus 427 ----~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~-~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~ 501 (599)
....+....+.+++.+..++.......+..++ +.+|+.+++.+....+|.. ++|.+.|.++|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~-~g~~~~G~l~~~----------- 366 (390)
T TIGR02718 299 LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL-IASSIAGYLTDR----------- 366 (390)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------
Confidence 11122233344566777777777787777776 7899999999998999976 899999999998
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHH
Q 047229 502 CIGARCYRVAFVTISAATFFACIV 525 (599)
Q Consensus 502 ~~~~~~~~~~f~~~~~~~~i~~i~ 525 (599)
.+|+..|.+.+++.+++.++
T Consensus 367 ----~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 367 ----FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred ----HccHHHHHHHHHHHHHHHHH
Confidence 35888888877766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=180.42 Aligned_cols=345 Identities=16% Similarity=0.179 Sum_probs=227.5
Q ss_pred hHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHh
Q 047229 56 SSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGA 134 (599)
Q Consensus 56 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 134 (599)
.+.+-.++++|++.....+..+ ..++.|.+.||+|+|..+++|...+...++++++. ++++++++.|.+||
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--------~sy~~l~vAR~LQg 170 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--------NSYPMLFVARSLQG 170 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--------chhHHHHHHHHHhh
Confidence 4566778899997666666665 59999999999999999999999999999888655 78999999999999
Q ss_pred ccccccchhHHHHHhhcCCC--CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhcccccc
Q 047229 135 NSQSFPNTGALVTCVKNFPE--SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRIIK 212 (599)
Q Consensus 135 ~g~g~~~~~~~~~~~~~fp~--~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 212 (599)
+|.++..++...++++.||+ +|++++|+..++.++|-+++|++++.+.+.
T Consensus 171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~---------------------------- 222 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF---------------------------- 222 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh----------------------------
Confidence 99999999999999999985 389999999999999999999998887652
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhh
Q 047229 213 IARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAH 292 (599)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (599)
.+.+..|.....+.+.-+.+. ++.+
T Consensus 223 ----~Gk~aPFlVL~~v~Lld~~L~---------------------------l~vi------------------------ 247 (464)
T KOG3764|consen 223 ----AGKSAPFLVLAIVLLLDGALQ---------------------------LLVI------------------------ 247 (464)
T ss_pred ----cCCcCcHHHHHHHHHHHHHHH---------------------------Hhee------------------------
Confidence 122333331111111000000 0000
Q ss_pred hccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcch
Q 047229 293 YDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSI 371 (599)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 371 (599)
+|.+.+ +....+...+++++++|..+......-.........-..++.+..+ ...+.-+.
T Consensus 248 ---~p~~~~----------------~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~ 308 (464)
T KOG3764|consen 248 ---EPTEMD----------------PDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEV 308 (464)
T ss_pred ---CccccC----------------ccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcce
Confidence 011100 0011223456899999988766543333333333334455555444 45333377
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHH-HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHH
Q 047229 372 ASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTL-VILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLV 449 (599)
Q Consensus 372 ~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~ 449 (599)
+..+....+...+|..+.|.++||+++.+ |+... +.+...++.......+ ...+++-.+..+++.+...+...
T Consensus 309 G~~fLp~~~~y~ig~~lfg~la~k~~~~~-----wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~ 383 (464)
T KOG3764|consen 309 GLAFLPASLSYAIGTNLFGKLADKYPHLR-----WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLI 383 (464)
T ss_pred eeeecccccchhccCchHHHHHHhcCchh-----HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHh
Confidence 88888888999999999999999997432 33333 3222222222222222 22344444444555554444433
Q ss_pred HHHHHhhC---CC---cccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHH
Q 047229 450 TIISELFG---LK---HYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFAC 523 (599)
Q Consensus 450 ~~~~e~~~---~~---~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 523 (599)
.....+.. .+ .+|..+++...+..++.. +||.++|.+.+. .+|.+.-.+.+...++-.
T Consensus 384 P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a-~GP~~gg~iv~~---------------iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 384 PTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYA-IGPTFGGSLVEA---------------IGFEWLMTIIGILNLIYA 447 (464)
T ss_pred hhhHHhcchhhccccceeeeHHHHHHHHHHHhhh-ccccccchheee---------------hhHHHHHHHHHHHHHHHH
Confidence 33333332 22 678899999989999976 999999999888 458888777777777666
Q ss_pred HHHHHHHh
Q 047229 524 IVSIILVL 531 (599)
Q Consensus 524 i~~~~~~~ 531 (599)
.++.+++.
T Consensus 448 pvl~ll~~ 455 (464)
T KOG3764|consen 448 PVLLLLRI 455 (464)
T ss_pred HHHHHHHH
Confidence 65555443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-25 Score=231.73 Aligned_cols=379 Identities=14% Similarity=0.097 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCCh---hHHHHHHHHHHHhcccc
Q 047229 63 TTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKP---HVWQMCLYMLIGANSQS 138 (599)
Q Consensus 63 ~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~g~g 138 (599)
.+.+++.+...++..+ +++.|.++||+|||+++.++.++..+|.++..++ + +++.++++|+++|+|.|
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~R~~~G~~~g 117 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA--------PSYNNFWMLLIGRFLIGFGIG 117 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccc
Confidence 3566778888888876 7899999999999999999999999998766433 5 79999999999999999
Q ss_pred ccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHhhhcccccccc
Q 047229 139 FPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD---NTKALILLLACLPTIVPIVFIPTIRIIKIA 214 (599)
Q Consensus 139 ~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 214 (599)
...+....++.|..| ++||+..++...+..+|..++..+...+... +.|++.+....+|.++.++...++++.|+.
T Consensus 118 ~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~w 197 (451)
T PF00083_consen 118 GAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRW 197 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence 999999999999997 5699999999999888887776665444221 235666666666665554444444443331
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhc
Q 047229 215 RPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYD 294 (599)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (599)
. ..+.+.+ +.++.+.+..+
T Consensus 198 ---------L------------------------------------------------~~~~~~~----~A~~~l~~~~~ 216 (451)
T PF00083_consen 198 ---------L------------------------------------------------LSKGRDE----EAEKVLRKLRG 216 (451)
T ss_pred ---------e------------------------------------------------ccccccc----ccccccccccc
Confidence 1 0000000 00011111000
Q ss_pred cCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchh----HHHHHHHHHhhhcch-hhhhcchHHHHHHcCCCCc
Q 047229 295 QAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSID----MLILFTATTCSIGGA-LAAIDNMGQIGKALGYPTH 369 (599)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~ 369 (599)
.+..+++.+++ . ++.++.++.+.+++++++++. .........+....+ .....+.+.+.++.|.+..
T Consensus 217 ~~~~~~~~~~~------~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 288 (451)
T PF00083_consen 217 KEIEDEEIEEI------K--AEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS 288 (451)
T ss_pred ccccccccccc------c--cccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000000000 0 000000011133455665533 222222222222222 2334445556666676655
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-----Hhhh----h-hHHHHHHHHHH
Q 047229 370 SIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIA-----FAVH----N-SLYFASIIIGF 439 (599)
Q Consensus 370 ~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~-~~~i~~~l~g~ 439 (599)
-....+..+...++.+++.++.||+|||+ ++..+..+++++.+.+. ..+. . ...+...+..+
T Consensus 289 --~~~~~~~~~~~~~~~~~~~~~~~~~GRr~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 360 (451)
T PF00083_consen 289 --FLATLILGLVNFLGTLLAIFLIDRFGRRK------LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFA 360 (451)
T ss_pred --ccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 22334555777788888889999999985 33444444443333321 1111 1 12222222223
Q ss_pred Hhh-hHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHH
Q 047229 440 CLG-AQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAA 518 (599)
Q Consensus 440 ~~g-~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 518 (599)
+.+ +..+....+.+|.+|.+.|+++.|+......+++. +.|.+...+.+.. +....+.+.+++
T Consensus 361 ~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~-i~~~~~~~~~~~~---------------~~~~~~~i~~~~ 424 (451)
T PF00083_consen 361 FFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGF-IIPFLFPYLFNNL---------------GGWGVFLIFAGV 424 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccc---------------cccccchhhHHH
Confidence 333 33455568889999999999999999988888876 6676666666552 124556667777
Q ss_pred HHHHHHHHHHHHhhhccccccccc
Q 047229 519 TFFACIVSIILVLRTKNFYQGDIY 542 (599)
Q Consensus 519 ~~i~~i~~~~~~~~~~~~~~~~~~ 542 (599)
++++.+...++.+++|+++.+|+.
T Consensus 425 ~~i~~i~~~~~lpET~g~~l~ei~ 448 (451)
T PF00083_consen 425 CLIAIIFVYFFLPETKGKTLEEIQ 448 (451)
T ss_pred HHHHHhheeEEEeeCCCCCHHHHH
Confidence 778888888889999987765543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=166.39 Aligned_cols=366 Identities=13% Similarity=0.105 Sum_probs=238.0
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHH---HhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcc-cCChHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGSSYMF---ALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEV-APPWIVLLSGS 99 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~~~~~---~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~ig~ 99 (599)
.+|..+++..++. ..|+.+.+ +.+..+++.+.+++.++..++-+.+..-.++ .++.|++.|| +|-|...++-.
T Consensus 40 ~hr~m~lv~mc~l--gfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~ 117 (459)
T KOG4686|consen 40 GHRFMALVFMCLL--GFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC 117 (459)
T ss_pred hhHHHHHHHHHHh--cccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence 4565554433333 34554444 4667788889999998988887777888766 8899999998 59888777777
Q ss_pred HHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHH
Q 047229 100 IMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIY 178 (599)
Q Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~ 178 (599)
....+|.+++++. +.. +.+|+++.+|++.|+|.-..-.+-+.++..||. ++-+.++|+..+..-+|+.+--.+.
T Consensus 118 ~fv~~GqliFa~G--gi~---~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm 192 (459)
T KOG4686|consen 118 IFVFLGQLIFAAG--GIS---HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLM 192 (459)
T ss_pred HHHHHHHHHHHhc--hHH---HHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeec
Confidence 7778887766433 323 789999999999999987776677788899996 7799999998777666654432221
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHH
Q 047229 179 HAVNGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATA 258 (599)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (599)
..+.+. .-...| ..... .+++++.+...
T Consensus 193 ~~ly~~-------~~~~~~----------------------~~ghT-------~LG~~l~~~~~---------------- 220 (459)
T KOG4686|consen 193 PFLYDT-------MGRMFP----------------------GVGHT-------LLGLWLCFEVK---------------- 220 (459)
T ss_pred HHHHHH-------HHHhcc----------------------cchHH-------HHHHHHHHHHH----------------
Confidence 111110 000000 00000 11111111000
Q ss_pred HHHHHHHhh--cchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhh-cchh
Q 047229 259 LVVVVLSLF--IPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAI-FSID 335 (599)
Q Consensus 259 ~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 335 (599)
.|..-+. +...+. .++.++... .++.+..+ +++ +.+.. -.|.
T Consensus 221 --tc~~slical~lg~~-D~rAerilh---------~e~g~~Ge-----------------~pk------Ltdv~~f~pp 265 (459)
T KOG4686|consen 221 --TCKQSLICALSLGLS-DDRAERILH---------LEEGFLGE-----------------EPK------LTDVNTFYPP 265 (459)
T ss_pred --HHHHHHHHHHHhhhh-hhHHHHHHh---------hhcCcccC-----------------Ccc------cccccccCcc
Confidence 0000000 000000 111111100 00001000 000 00111 2467
Q ss_pred HHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 047229 336 MLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 414 (599)
+|.+.++.++.......++..-+.++++ .|+|+..++.+.+.......+..++.|.++||.|++. +.+..+.+.
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----~wv~~a~~~ 340 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----WWVASACIL 340 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----hhHHHHHHH
Confidence 9999998888877777777777777777 5999999999999999999999999999999999875 445555555
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 415 SCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
...+...+.+ +....++.+.+.|+.+..........++.+.|.+..|+++|.++...++|-. +.|++.|.+.|..
T Consensus 341 tl~~H~~l~F-t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla-~i~Iiag~i~d~~ 415 (459)
T KOG4686|consen 341 TLLGHSGLFF-TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLA-FIPIIAGFIADGD 415 (459)
T ss_pred HHHHhhhHHh-hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhh-HHhhhhheeecCC
Confidence 5555554443 3445678888999998888777788888899999999999999999999965 7899999999883
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=186.17 Aligned_cols=384 Identities=14% Similarity=0.081 Sum_probs=228.2
Q ss_pred HhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 047229 55 KSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIG 133 (599)
Q Consensus 55 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 133 (599)
.+.++.+.....+..+.+.+|..+ ++++|.++||+|||++++.+.++..++.+..+++ +|++.++++|+++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--------~~~~~~~~~Rfl~ 181 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--------PNYWMFLIFRFLS 181 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--------CcHHHHHHHHHHH
Confidence 356677778888888888999977 6699999999999999999999999987655444 8999999999999
Q ss_pred hccccccchhHHHHHhhcC-CCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhcccccc
Q 047229 134 ANSQSFPNTGALVTCVKNF-PESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRIIK 212 (599)
Q Consensus 134 G~g~g~~~~~~~~~~~~~f-p~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 212 (599)
|++.+..+.....++.|++ |++|+.++.+ ......++.++++..+.+.. .|++..+...+|....++..++.++.|
T Consensus 182 G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 182 GFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred HhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 9999999999999999999 5779999999 66666778888888877776 555555555555544443333322222
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhh
Q 047229 213 IARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAH 292 (599)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (599)
+ +... +.+.+ +..+.+.+.
T Consensus 259 r---------wl~~------------------------------------------------~g~~~----~a~~~l~~~ 277 (521)
T KOG0255|consen 259 R---------WLLS------------------------------------------------KGRID----EAIKILKKI 277 (521)
T ss_pred H---------HHHH------------------------------------------------cCchH----HHHHHHHHH
Confidence 2 1100 00000 000000000
Q ss_pred hccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchh
Q 047229 293 YDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIA 372 (599)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 372 (599)
.+.+....+..+..+... .....+....++...+.++++.+++....+...+.........+-+......+|.+ ..
T Consensus 278 a~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~---~~ 353 (521)
T KOG0255|consen 278 AKLNGRKLSVKELLRLEL-LLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGN---IY 353 (521)
T ss_pred HhhcCCCCCcHHHHHHHH-HhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCch---HH
Confidence 000000000000000000 00011111112223467888887543332222222211111111222222333332 22
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh--hh--hHHHHHHHHHHHhhhHHHHH
Q 047229 373 SFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV--HN--SLYFASIIIGFCLGAQLSLL 448 (599)
Q Consensus 373 ~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~i~~~l~g~~~g~~~~~~ 448 (599)
....+.+.....+....+...|++|||. ....+..+..++.+...... .. ...+...+..++.+..+...
T Consensus 354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (521)
T KOG0255|consen 354 LNFTLSGLVELPAYFRNGLLLPEFGRRP------PLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLI 427 (521)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCcHH------HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444466777777789999997764 56666666666665554432 12 23444455566777777788
Q ss_pred HHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 047229 449 VTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSII 528 (599)
Q Consensus 449 ~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 528 (599)
+.+..|.+|...|..+.+.......++++ ++|.+.-...... ....+...+.+..+..++...
T Consensus 428 ~~~~~el~pt~~r~~~~~~~~~~~~~~~i-~ap~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~ 490 (521)
T KOG0255|consen 428 FLYSAELIPTVVRNTAVGAISAAARLGSI-LAPLFPLLLRQMF----------------PLLGLILFGWLALLLGLLSLL 490 (521)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc----------------ccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999976 7775543332221 111222244555566666656
Q ss_pred HHhhhcccc
Q 047229 529 LVLRTKNFY 537 (599)
Q Consensus 529 ~~~~~~~~~ 537 (599)
+.++++...
T Consensus 491 ~lpet~~~~ 499 (521)
T KOG0255|consen 491 LLPETKGKP 499 (521)
T ss_pred cCcccCCCC
Confidence 677776543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-17 Score=172.38 Aligned_cols=341 Identities=11% Similarity=0.021 Sum_probs=192.6
Q ss_pred hHHHHHhHhCCCHHHHHHHHHHHH-hHhhhhhhhhhhhcc----cCC-hHHHHHHHHHHHHHHHHHHHHHhccCCCChhH
Q 047229 50 YSNDIKSSLGYDQTTLNLVSFFKD-LGGNLGVLAGLTYEV----APP-WIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHV 123 (599)
Q Consensus 50 ~~~~l~~~~~~s~~~~~~~~~~~~-~~~~~~~~~G~l~Dr----~G~-r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~ 123 (599)
+...+.+++|+++.+++.+.+... +-.+..|+.|.++|| +|| |+.++.+.+..++..++++... ... ....+
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p-~~~-~~~~~ 109 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP-DFG-ATGKI 109 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC-CCC-cchHH
Confidence 445678899999999999655554 555669999999999 777 4556667777766654442221 111 12335
Q ss_pred HHHHHHHHHHhccccccchhHHHHHhhcCC--CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 124 WQMCLYMLIGANSQSFPNTGALVTCVKNFP--ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 124 ~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp--~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
.++++..++.+.+......+-.++..++.+ ++|.+..++-..+..+|+.+++.+...+..
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~------------------ 171 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVD------------------ 171 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 566666666666666666666677888874 568888888777766776666543322110
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhh-hhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVI-KQELNI 280 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 280 (599)
. +. . .+....|.....+ .++...+.. + ..+.. +++.
T Consensus 172 ~-----~~---~---~~~~~g~~~~~~i---~~ii~~v~~-----------------------~----~~~~~~~e~~-- 208 (444)
T PRK09669 172 I-----LG---K---GDEQKGYFYAMMV---MGLLGVVLF-----------------------F----CCFFMTKERY-- 208 (444)
T ss_pred H-----hC---C---CchhhhHHHHHHH---HHHHHHHHH-----------------------H----HHhCCeEEec--
Confidence 0 00 0 0001111111100 010000000 0 00000 0000
Q ss_pred hhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHH
Q 047229 281 WKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQI 360 (599)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (599)
. ++ ++++......+++++||+.++.+.+..++.............++
T Consensus 209 -~--------------~~------------------~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~ 255 (444)
T PRK09669 209 -T--------------PE------------------VDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYY 255 (444)
T ss_pred -C--------------CC------------------CcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 0 00 00001112346778899998887766555433332222222222
Q ss_pred HHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH-HHHHHHH--hhhhhHHHHHHHH
Q 047229 361 GKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCI-GYLLIAF--AVHNSLYFASIII 437 (599)
Q Consensus 361 ~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~~~l~ 437 (599)
.+..-.++...+.......+..+++.++.++++||+|+|+ ....+.++.++ ...++.. .+....++..++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 329 (444)
T PRK09669 256 VNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR------AFKWTIVAFVILSALIFFIPPSNVWLIFALNILF 329 (444)
T ss_pred eeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 2322112223334445556778888999999999998875 33333333332 2222222 1233455666778
Q ss_pred HHHhhhHHHHHHHHHHHhhC-------CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhh
Q 047229 438 GFCLGAQLSLLVTIISELFG-------LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREAL 493 (599)
Q Consensus 438 g~~~g~~~~~~~~~~~e~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~ 493 (599)
|++.+...+...++++|..+ .+..|..+|..+....+|.. +++.+.|.+.+..+-
T Consensus 330 g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~a-lg~~i~g~ll~~~Gy 391 (444)
T PRK09669 330 NFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLA-IGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 99999999999999998874 45567778888888889976 899999999887654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-16 Score=165.17 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=144.8
Q ss_pred hHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHH-HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCc
Q 047229 326 ALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGK-ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPR 404 (599)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~ 404 (599)
+++++.|.|+....+++.++..-....++.....|.+ ++|++..+...+.....+.+++|.++.|++.||+|.|.+
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~--- 349 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK--- 349 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---
Confidence 4566677788888888888776666666666677766 479999998888889999999999999999999997721
Q ss_pred hHHHHHHHHHHHHHHHHHH--------HhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhh
Q 047229 405 PLLLTLVILFSCIGYLLIA--------FAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGS 476 (599)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~ 476 (599)
+.++........+....+. ..+.+.+++..+++|++.|...+..-++.+|+.|+++.+.-+|+..+.....+
T Consensus 350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss 429 (477)
T PF11700_consen 350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS 429 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 1222222222222222222 33455678888899999999999999999999999999999999999999997
Q ss_pred hHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 477 YIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 477 ~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
. +||.+.|.+.|.. ++.+..+....++.+++.++...+.
T Consensus 430 ~-lGPll~g~i~~~t--------------g~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 430 W-LGPLLFGLITDAT--------------GSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred H-HHHHHHHHHHHHh--------------CCchhHHHHHHHHHHHHHHHHhhcc
Confidence 6 9999999999994 4688888888888887777664443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-16 Score=156.75 Aligned_cols=188 Identities=18% Similarity=0.171 Sum_probs=132.8
Q ss_pred hHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcC-CCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCc
Q 047229 326 ALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALG-YPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPR 404 (599)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~ 404 (599)
+..+++|+|++....+..++.......+..+.+.|+++.| ++....+...++..++.++.-...+++..|+|.|+
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~---- 274 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW---- 274 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----
Confidence 3468999999988887777776666667777888899987 77676676666666777777777777777776553
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hhhh-HHHH----HHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhc-cchhhhh
Q 047229 405 PLLLTLVILFSCIGYLLIAFA-VHNS-LYFA----SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSV-SSPIGSY 477 (599)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~i~----~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~-~~~ig~~ 477 (599)
++.++.+..++=..++... ++.. .++. ..+.|+.++..+.....++.+..|++.++++.++.+. ...+|..
T Consensus 275 --ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~ 352 (400)
T PF03825_consen 275 --LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGA 352 (400)
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHH
Confidence 6677777777666565544 3322 2222 2457999999999999999999999999999999875 4577865
Q ss_pred HhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 478 IFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 478 i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
+|..++|+++|+.+... ...|...+.+.+++.++..++..++
T Consensus 353 -iG~~igG~l~~~~g~~~---------~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 353 -IGSLIGGWLYDAFGARG---------MFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred -HHHHHHHHHHHHhcchh---------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999965322 1234455555555555444444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=170.95 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=195.0
Q ss_pred hHHHHHhHhCCCHHHHHHH-HHHHHhHhhhhhhhhhhhc----ccCC-hHHHHHHHHHHHHHHHHHHHHHhccCCCChhH
Q 047229 50 YSNDIKSSLGYDQTTLNLV-SFFKDLGGNLGVLAGLTYE----VAPP-WIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHV 123 (599)
Q Consensus 50 ~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~D----r~G~-r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~ 123 (599)
+...+.+.+|+++.+++.+ .....+-.+..|+.|.++| |+|| |+.++++.+.++++..+++.. .... ....+
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~-p~~~-~~~~~ 106 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA-HLFE-GTAQY 106 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC-CCCC-ccHHH
Confidence 3445678889999999995 4444555566999999999 6698 666677777777775555321 0001 11124
Q ss_pred HHHHHHHHHHhccccccchhHHHHHhhcC--CCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 124 WQMCLYMLIGANSQSFPNTGALVTCVKNF--PESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 124 ~~l~~~r~l~G~g~g~~~~~~~~~~~~~f--p~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
..+++..++.+++..+...+-.++..+.. |++|.+..++-..+..+|+.+.+.+...+..
T Consensus 107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~------------------ 168 (473)
T PRK10429 107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVN------------------ 168 (473)
T ss_pred HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 45555666777777777777777888877 3569888888666555665555433222110
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
. . . ..+....+.....+ .++...+..+ ......++++
T Consensus 169 ~-----~---g---~~~~~~g~~~~~~i---~~~~~~~~~~--------------------------~~~~~~~e~~--- 205 (473)
T PRK10429 169 Y-----V---G---GGDRGFGFQMFTLV---LIAFFIVSTI--------------------------ITLRNVHEVY--- 205 (473)
T ss_pred H-----h---C---CCchhhhHHHHHHH---HHHHHHHHHH--------------------------HHHcCceecC---
Confidence 0 0 0 00001111111111 0000000000 0000001100
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
. +++.+ .+++++......++.+++|+.++.+.+..++............+++.
T Consensus 206 ~--------------~~~~~-------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~ 258 (473)
T PRK10429 206 S--------------SDNQV-------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYF 258 (473)
T ss_pred C--------------ccccc-------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEE
Confidence 0 00000 00000111122345567888888777666655544333333334443
Q ss_pred HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-----hh-hhhHHHHHH
Q 047229 362 KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-----AV-HNSLYFASI 435 (599)
Q Consensus 362 ~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~i~~~ 435 (599)
+....++...+.+.....+..+++.++.+++.||+|+|+ .+..+..+.+++.+.+.. .+ ...+++..+
T Consensus 259 ~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 332 (473)
T PRK10429 259 TYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI------LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGI 332 (473)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 433334444555666667888999999999999999875 334444333333322211 11 233445566
Q ss_pred HHHHHhhhHHHHHHHHHHHhhC-------CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhh
Q 047229 436 IIGFCLGAQLSLLVTIISELFG-------LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREAL 493 (599)
Q Consensus 436 l~g~~~g~~~~~~~~~~~e~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~ 493 (599)
+.|++.+...+..+++.+|..+ .+..|..+|...+...++.. +++.+.|.+.+..+-
T Consensus 333 l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~a-l~~~i~g~~l~~~Gy 396 (473)
T PRK10429 333 LLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSA-FAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 7788888888888889998844 55667788888888888876 888899998887543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-16 Score=156.89 Aligned_cols=187 Identities=16% Similarity=0.133 Sum_probs=137.2
Q ss_pred hHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHc----CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 047229 326 ALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKAL----GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYK 401 (599)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~ 401 (599)
...+++|+|++|.+.+...........+....+.|++.. +.++...|.+.+..-+...+.-.+.+++.+|+|.|+
T Consensus 212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~- 290 (412)
T PF01306_consen 212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN- 290 (412)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh-
Confidence 457889999999988766665555555555567676654 333445666677777888888888999999998876
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhh-hccchhhhhHh
Q 047229 402 VPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVG-SVSSPIGSYIF 479 (599)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~-~~~~~ig~~i~ 479 (599)
.+.++..++.+=.......+ +..+.+.-.+-++-.+.......-++.+.+|+|..++.+.+. +...+++.. +
T Consensus 291 -----~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~-i 364 (412)
T PF01306_consen 291 -----LLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII-I 364 (412)
T ss_dssp -----HHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH-H
T ss_pred -----HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-H
Confidence 56666666776666655443 455666777888888888888889999999999999999986 577788876 6
Q ss_pred hhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 480 NVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 480 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+.+.|.++|+. +++.+|++++.+.+...++..+..++++
T Consensus 365 ~s~~~G~lyd~~---------------G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 365 LSPLAGYLYDRI---------------GFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HhhhHHhhHhhc---------------CcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 677899999994 5888999988887777777766655444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-15 Score=155.91 Aligned_cols=391 Identities=12% Similarity=0.006 Sum_probs=212.8
Q ss_pred hhHHHHHhHhCCCHHHHHHHHHHHH-hHhhhhhhhhhhhc----ccCChHHHHHH-HHHHHHHHHHHHHHHhc--cCC--
Q 047229 49 LYSNDIKSSLGYDQTTLNLVSFFKD-LGGNLGVLAGLTYE----VAPPWIVLLSG-SIMNFFGFFMIWLSVSH--RFG-- 118 (599)
Q Consensus 49 ~~~~~l~~~~~~s~~~~~~~~~~~~-~~~~~~~~~G~l~D----r~G~r~~~~ig-~~~~~~g~~~~~~~~~~--~~~-- 118 (599)
.+.+.+.+++|.+..+.+++..... .+.+.+|+.|.++| |+|||+.++++ .+...++.++++.+-.. ..+
T Consensus 25 ~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~ 104 (477)
T TIGR01301 25 SLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN 104 (477)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc
Confidence 3345567889999999999655544 44566999999999 59999998875 44444454444322100 000
Q ss_pred ---CChh--HHHHHHHHHHHhccccccchhHHHHHhhcCCC-Cc--cchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHH
Q 047229 119 ---AKPH--VWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SR--GVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALI 190 (599)
Q Consensus 119 ---~~~~--~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~r--g~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~ 190 (599)
.... .+.++++-.+..++.....++..+++.|.+|+ +| +.+.++.+.+.++|++++..+++......
T Consensus 105 ~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~----- 179 (477)
T TIGR01301 105 LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK----- 179 (477)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Confidence 0000 12233344455567777778888899999974 33 68999998888999998877765421000
Q ss_pred HHHHHHHHHHHHHhhhcccccccc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcc
Q 047229 191 LLLACLPTIVPIVFIPTIRIIKIA-RPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIP 269 (599)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (599)
..| +....+.+ ...+.+..|. ..++.+++..+ .
T Consensus 180 ----~~~---------~~~~~~~~~~~~~~~~~F~-------i~a~~l~i~~l--------------------------~ 213 (477)
T TIGR01301 180 ----IFP---------FTKTEACGVSCANLKSCFL-------IDIILLAILTY--------------------------I 213 (477)
T ss_pred ----hcc---------cccccccccccchHHHHHH-------HHHHHHHHHHH--------------------------H
Confidence 000 00000000 0001112221 11111111100 0
Q ss_pred hhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcc-----hhHHHHHHHHH
Q 047229 270 LAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFS-----IDMLILFTATT 344 (599)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~ 344 (599)
.....+|.+. .++++.++++ .++.++......+++++++ +.+|.+++..+
T Consensus 214 t~~~v~E~~~------------------~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqf 268 (477)
T TIGR01301 214 ALSAVKENPL------------------IGSDDFINSE-------AAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTC 268 (477)
T ss_pred HeeeeeccCC------------------Cccccchhhh-------cccccccchhhhHHHHHHHHHHCCHHHHHHHHHHH
Confidence 0011111110 0000000000 0000000111123333332 56889999999
Q ss_pred hhhcchhhhhcchHHHHHH--cCCCCcc------h---h-hhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 345 CSIGGALAAIDNMGQIGKA--LGYPTHS------I---A-SFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~--~g~~~~~------~---~-~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
+.+...+.+..+.+++..+ ++-++.. . + +......+.+.+.+++..++.+|+|+| +.+-.++.
T Consensus 269 fsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~-----k~~~~~s~ 343 (477)
T TIGR01301 269 LNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG-----KRLWGIVN 343 (477)
T ss_pred HHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHH
Confidence 9888888777777766543 2322211 1 1 122333344444444555555555432 12334554
Q ss_pred HHHHHHHHHHHHhh----------------------hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCC--Ccccchhhhh
Q 047229 413 LFSCIGYLLIAFAV----------------------HNSLYFASIIIGFCLGAQLSLLVTIISELFGL--KHYSTLYNVG 468 (599)
Q Consensus 413 ~~~~~~~~~~~~~~----------------------~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~--~~~g~~~g~~ 468 (599)
++.++++....+.+ .....+.+.++|+.....+++-++++++..++ +..|...|+.
T Consensus 344 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgil 423 (477)
T TIGR01301 344 IILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVL 423 (477)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHH
Confidence 45555444432211 13455667778999999999999999999984 5669999999
Q ss_pred hccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 469 SVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 469 ~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
|....+..+ +.....|.+.+..+ .+-..++.+.++.++++.+.++++.++.+
T Consensus 424 N~~I~lpQi-i~sl~~g~~~~~~g-------------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 424 NLAIVIPQI-IVSLGSGPWDQLFG-------------GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHcC-------------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 998888876 44445666544432 23456788888889999998888777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.5e-17 Score=168.16 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=112.0
Q ss_pred hHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCc
Q 047229 326 ALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPR 404 (599)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~ 404 (599)
.+++++|||.++...+..++............+++.++ +|.++...+.......++.+++.++.+++.||+++|+
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~---- 295 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN---- 295 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----
Confidence 36778999999888777776655555555555666655 4665544444444445667888999999999998765
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCC-------Ccccchhhhhhccchh
Q 047229 405 PLLLTLVILFSCIGYLLIAFAV---HNSLYFASIIIGFCLGAQLSLLVTIISELFGL-------KHYSTLYNVGSVSSPI 474 (599)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~-------~~~g~~~g~~~~~~~i 474 (599)
.+..+.++.+++.+++...+ .+..++..++.|++.+...+...++.+|..+. +..|..+|+.++...+
T Consensus 296 --~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 296 --TFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred --HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence 45556666666555443322 22344556677889888888888888887653 3568899999999999
Q ss_pred hhhHhhhhHHHHHHhhhh
Q 047229 475 GSYIFNVRVAGRLYDREA 492 (599)
Q Consensus 475 g~~i~~~~l~g~~~~~~~ 492 (599)
|.. +++.+.+.+.+..+
T Consensus 374 g~a-ig~~i~g~~l~~~G 390 (448)
T PRK09848 374 GQA-IGGSIPAFILGLSG 390 (448)
T ss_pred HHH-HHHHHHHHHHHHcC
Confidence 976 88888988887654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-17 Score=158.98 Aligned_cols=278 Identities=13% Similarity=0.089 Sum_probs=182.1
Q ss_pred hhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 047229 121 PHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTI 199 (599)
Q Consensus 121 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 199 (599)
.+|+.+++.-++.|.|.+...+..+.++.+..| +++.+.+++.+.++++|..++|.+.+.+......
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~------------ 75 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAG------------ 75 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc------------
Confidence 679999999999999999999999999999986 5799999999999999999999998876521100
Q ss_pred HHHHhhhccccccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhh
Q 047229 200 VPIVFIPTIRIIKIAR-PENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQEL 278 (599)
Q Consensus 200 ~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (599)
....++ ........+.+.+..++ ....+.. +++.. .+.+
T Consensus 76 ----------~~~~~~~~~~~~~~~~~~~yl~ia--~~~~~~~---------------------i~~~~-------~~~p 115 (310)
T TIGR01272 76 ----------DLSMQVATANAEAAKVHTPYLLLA--GALAVLA---------------------IIFAF-------LPLP 115 (310)
T ss_pred ----------chhhhhhhhhHHHHHHHHHHHHHH--HHHHHHH---------------------HHHHH-------ccCC
Confidence 000000 00000001111111111 1100000 00000 0000
Q ss_pred hhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchH
Q 047229 279 NIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMG 358 (599)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (599)
+. + +++++ + ..+++. ...++.+++|.++...+..++..+....+..|.+
T Consensus 116 ~~-~--------------~~~~~---~---------~~~~~~----~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~ 164 (310)
T TIGR01272 116 EL-Q--------------EADVA---R---------VSSGDT----TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLV 164 (310)
T ss_pred CC-C--------------ccccc---c---------cccccc----cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00000 0 000000 0113467788888888888888888889999999
Q ss_pred HHHHH---cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 047229 359 QIGKA---LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASI 435 (599)
Q Consensus 359 ~~~~~---~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 435 (599)
.|+++ .|+++.+++...+.+..+.++||++++++.||+++|+ .+..+..+.+++.++....+.....+...
T Consensus 165 ~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~------~l~~~~~l~~~~~~l~~~~~~~~~~~~~~ 238 (310)
T TIGR01272 165 NFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR------YLAFNAFLAVLLSIGAALTHGYVAMWFVL 238 (310)
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99975 3899999999999999999999999999999998765 34455545554444433333333344666
Q ss_pred HHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 436 IIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 436 l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++|++.+..+|...+...+.+| ++.+++.++. ..+.+|+. +.|++.|.+.|.
T Consensus 239 l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~-i~P~l~G~lad~ 290 (310)
T TIGR01272 239 ALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGA-IVPLLQGSLADC 290 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcch-HHHHHHHHHHHh
Confidence 8899999999999999998887 4456777775 45567765 889999999997
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-15 Score=151.49 Aligned_cols=154 Identities=13% Similarity=0.047 Sum_probs=107.5
Q ss_pred HHHHHhhHH-HHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhccc-CChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 047229 44 SYMFALYSN-DIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVA-PPWIVLLSGSIMNFFGFFMIWLSVSHRFGAK 120 (599)
Q Consensus 44 ~~~~~~~~~-~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~-G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~ 120 (599)
.|....+.| .+.+++|++..+.+.+...+.... +..+++|+++||+ |||+++++|.++..++.++++.. .
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~--~----- 97 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS--E----- 97 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh--h-----
Confidence 455544444 456779999999999655555554 5588999999999 99999999999999997655321 1
Q ss_pred hhHHHHHHHHHHHhccccccchhHHHHHhhcCCC---CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 047229 121 PHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE---SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLP 197 (599)
Q Consensus 121 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~---~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~ 197 (599)
.+...+.+...+.++|.|...+....++.+.||+ +|..+.++...+..+|+.+++.+.+.+.+...|++.+..+.+.
T Consensus 98 ~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig 177 (493)
T PRK15462 98 IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG 177 (493)
T ss_pred cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 1122233344445566666666667889999973 4889999999888899999999998887655555544444433
Q ss_pred HHHHHHh
Q 047229 198 TIVPIVF 204 (599)
Q Consensus 198 ~~~~~~~ 204 (599)
.+++++.
T Consensus 178 m~l~li~ 184 (493)
T PRK15462 178 MIAGLVI 184 (493)
T ss_pred HHHHHHH
Confidence 3443333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-16 Score=167.57 Aligned_cols=355 Identities=12% Similarity=0.034 Sum_probs=210.8
Q ss_pred HhhhhH-HHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhcccC-----ChHHHHHHHHHHH-HHHHHHHH
Q 047229 39 SVNGSS-YMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVAP-----PWIVLLSGSIMNF-FGFFMIWL 111 (599)
Q Consensus 39 ~~~g~~-~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~ig~~~~~-~g~~~~~~ 111 (599)
+.-|.. .......|.+++++|++.++++.+.+...+...+.+++|+++||++ ||+.++++.++.. ++. ..+
T Consensus 36 ~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~--~~l 113 (468)
T TIGR00788 36 FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILY--GLL 113 (468)
T ss_pred HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH--Hhc
Confidence 444553 3334666778889999999999888888888888888999999998 7777777776552 221 111
Q ss_pred HHhccCCCChh-HHHHHHHHHHHhccccccchhHHHHHhhcCCCCccc---hhHHHHHhhhhhHHHHHHHHHHhcCCChH
Q 047229 112 SVSHRFGAKPH-VWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGV---VIGLLKGLIGLSGAIMTQIYHAVNGDNTK 187 (599)
Q Consensus 112 ~~~~~~~~~~~-~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~---~~g~~~~~~~lg~~i~~~i~~~~~~~~~~ 187 (599)
. ..++ .....+..++.+++.+....++-.+..|..+++++. ..++.....++|.++++.+.+.+.+...|
T Consensus 114 ---~---~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~ 187 (468)
T TIGR00788 114 ---P---GKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLT 187 (468)
T ss_pred ---c---cccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1 1133 334445888999999999999999999998744333 33344444457788877777765543222
Q ss_pred HH-HHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHh
Q 047229 188 AL-ILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSL 266 (599)
Q Consensus 188 ~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (599)
+. ++..+..+.+. .+...++++.++
T Consensus 188 ~~~f~~~a~l~ll~-~~~~~~~~E~~~----------------------------------------------------- 213 (468)
T TIGR00788 188 RILFLITAALLLLQ-LFVSNLSKERRA----------------------------------------------------- 213 (468)
T ss_pred chHHHHHHHHHHHH-HHHHHhcccccc-----------------------------------------------------
Confidence 22 22222222211 111111111000
Q ss_pred hcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHh-
Q 047229 267 FIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTC- 345 (599)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 345 (599)
... |+..+.......... . ......++.....++.+++|..|...+..++
T Consensus 214 -------------~~~--------------~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~ 264 (468)
T TIGR00788 214 -------------FVR--------------PRIGTYLEMNMALLT-L-GVLANVKVQILGLRGAIQLLEIAKPLIFIFLS 264 (468)
T ss_pred -------------ccc--------------ccccccchhhhhhhh-h-hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 000 000000000000000 0 0000000011234566788888775554444
Q ss_pred h-hcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-
Q 047229 346 S-IGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIA- 423 (599)
Q Consensus 346 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~- 423 (599)
. .........++ .....+|+++.+.+......+++.+++..+.+++.+|++.|+ ++.++.++.+++.+...
T Consensus 265 ~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~------~l~~~~~l~~~~~~~~~~ 337 (468)
T TIGR00788 265 YANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL------LFGVTTLLYTLSSLFDLI 337 (468)
T ss_pred HhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHHhCcee
Confidence 2 11111111111 111347999999999999988888888888888777775543 56666666665543321
Q ss_pred H----------hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhh
Q 047229 424 F----------AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREA 492 (599)
Q Consensus 424 ~----------~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~ 492 (599)
. .+........++.+++.+..+.....++.+..|++..|+.+++.+...++|.. +++.+++.+.+..+
T Consensus 338 l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~-v~~~~gg~l~~~~g 415 (468)
T TIGR00788 338 LVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSS-VSGFLGVLLMETIG 415 (468)
T ss_pred eeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 0 11112334456678888888888899999999999999999999999999976 88888888888754
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=155.97 Aligned_cols=335 Identities=13% Similarity=0.075 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccc
Q 047229 61 DQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSF 139 (599)
Q Consensus 61 s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~ 139 (599)
+..-.|.+.+.+.+..++ ++.+|.++||||||+++++|.+..++.+.+.+++ .||..+++.|++.|+.-|-
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--------~~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--------RNFAAFVLARFLGGIFKGN 137 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhccCc
Confidence 334456688888888766 8999999999999999999999999987777655 7886666679999999986
Q ss_pred cchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHHHHHhhhccccccccCC
Q 047229 140 PNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNG-D-NTKALILLLACLPTIVPIVFIPTIRIIKIARP 216 (599)
Q Consensus 140 ~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 216 (599)
. ..+.++++|.++ ++|+++++.+...+++|-+++|.+++.+.. . -...+.+.+ |.
T Consensus 138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~al---P~------------------ 195 (451)
T KOG2615|consen 138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFAL---PC------------------ 195 (451)
T ss_pred h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHH---HH------------------
Confidence 5 578899999996 669999999999999999999888877543 0 000000000 00
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccC
Q 047229 217 ENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQA 296 (599)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (599)
+ .+..+... -+...+ +++.+. -+.++++ ++.
T Consensus 196 ------------~----~v~i~a~~----------------------~v~~~~--~~lpET-L~~rk~~--------~~~ 226 (451)
T KOG2615|consen 196 ------------L----LVFILAAG----------------------DVTFFP--WFLPET-LPLRKRN--------DEH 226 (451)
T ss_pred ------------H----HHHHHHHH----------------------HHHHHH--HhCCcc-ccchhhc--------ccc
Confidence 0 00000000 000000 000000 0000000 000
Q ss_pred CCCccccccccchhhhcccCCCCCCCCChhHHHhhcchh---H---HHH-HHHHHhhhcchhhhhcchHHHH--HHcCCC
Q 047229 297 IPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSID---M---LIL-FTATTCSIGGALAAIDNMGQIG--KALGYP 367 (599)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~---~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~g~~ 367 (599)
.+-.+..+++++ . .+.+ ...-..++||+. + |.. .+-.+.....+..+- +....+ ...|++
T Consensus 227 ~~~~~~~~~~~~------~-~~~~---~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~-~t~~~l~~~rfg~s 295 (451)
T KOG2615|consen 227 STLQEAADDRLA------L-LKFA---RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLE-NTVLFLTHGRFGYS 295 (451)
T ss_pred cchhhhhhhhhh------h-cchh---hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHH-hhHHHhhcCccCCC
Confidence 000000000000 0 0000 000011222221 1 111 111111111111122 222333 336899
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHH
Q 047229 368 THSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLS 446 (599)
Q Consensus 368 ~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~ 446 (599)
+.+.+.+++..++.+.+-.....+..||.... ....+..+..+++-.++++... .+..+++...+..+......+
T Consensus 296 s~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~----~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt 371 (451)
T KOG2615|consen 296 SMQQGKVLSTTGLLMLVIQLALVPILPRYKGN----IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVT 371 (451)
T ss_pred hhhheeeeehhhHHHHHHHHhccccccccccc----hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhH
Confidence 99999999888888887777776666665311 1123334444444444444332 244567778888888888888
Q ss_pred HHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 447 LLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 447 ~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
....++....|++.+|++.|+....++++-. +||.+.|.+...
T Consensus 372 ~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRa-iGPlv~g~i~~W 414 (451)
T KOG2615|consen 372 CLTSLVHKYGPQSQRGTLNGIFRSLGALARA-IGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHH-hhhhhhheeEEE
Confidence 8899999999999999999999999999976 899988877665
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=164.02 Aligned_cols=344 Identities=13% Similarity=0.094 Sum_probs=218.5
Q ss_pred hhHHHHHhHhCCCHHHHHHHHH-HHHhHhhhhhhhhhhhc----ccCChHH-HHHHHHHHHHHHHHHHHH-HhccCCCCh
Q 047229 49 LYSNDIKSSLGYDQTTLNLVSF-FKDLGGNLGVLAGLTYE----VAPPWIV-LLSGSIMNFFGFFMIWLS-VSHRFGAKP 121 (599)
Q Consensus 49 ~~~~~l~~~~~~s~~~~~~~~~-~~~~~~~~~~~~G~l~D----r~G~r~~-~~ig~~~~~~g~~~~~~~-~~~~~~~~~ 121 (599)
.+.+.+.+.+|+++..++.+.. ...+..+..|+.|.++| |+|||+. +++|.++..++.++++.. ..... ...
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~-~~~ 101 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS-FTA 101 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh-hhh
Confidence 3445677888999999999544 44555566999999999 8996665 556778888877666432 11111 112
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCC--CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFP--ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTI 199 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp--~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 199 (599)
....+++..++..++......+-.++..+..+ ++|.+..+.-..+..+|..+.+.+...+.+.
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~--------------- 166 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSW--------------- 166 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Confidence 34445666667788888888878888899885 4699999998777777776554444333210
Q ss_pred HHHHhhhccccccccCCcchh-hhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhh
Q 047229 200 VPIVFIPTIRIIKIARPENEL-KVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQEL 278 (599)
Q Consensus 200 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (599)
.. .+.. ..|.....+. ++...+..+ ......|++
T Consensus 167 -----------~g----~~~~~~~~~~~~~v~---~iv~~v~~~--------------------------i~~~~~ke~- 201 (428)
T PF13347_consen 167 -----------FG----GGDTSNGYRWMALVL---AIVGLVFFL--------------------------ITFFFVKER- 201 (428)
T ss_pred -----------hc----cCccchHHHHHHHHH---HHHHHHHhh--------------------------hhhheeeec-
Confidence 00 0000 1122111110 000000000 000000110
Q ss_pred hhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchH
Q 047229 279 NIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMG 358 (599)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (599)
+++. .+++++......++++++||.++.+.+..++............+
T Consensus 202 ------------------~~~~--------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~ 249 (428)
T PF13347_consen 202 ------------------SVEV--------------TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP 249 (428)
T ss_pred ------------------cccc--------------cccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence 0000 01111122233467889999999888888877666665566667
Q ss_pred HHHHHc-CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh---hhhhHHHHH
Q 047229 359 QIGKAL-GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA---VHNSLYFAS 434 (599)
Q Consensus 359 ~~~~~~-g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ 434 (599)
++.++. |.+ ...+.......+...++.++.++++||+|+|+ .+..+.++.+++.+++... +....++..
T Consensus 250 y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 322 (428)
T PF13347_consen 250 YYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK------VYIIGLLLAALGFLLLFFLGPGSPWLVLILF 322 (428)
T ss_pred HHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee------ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 777764 554 55666777888999999999999999999886 4455555555555443332 455677788
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhC-------CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhh
Q 047229 435 IIIGFCLGAQLSLLVTIISELFG-------LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREAL 493 (599)
Q Consensus 435 ~l~g~~~g~~~~~~~~~~~e~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~ 493 (599)
++.|++.+..+....++.+|..+ ++..|..+|+.++...++.. +++.+.+.+.+..+-
T Consensus 323 ~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~-la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 323 ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG-LAGAIVGLLLALVGY 387 (428)
T ss_pred HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhCc
Confidence 88899999998888888888764 45678899998888888876 778888888777543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-16 Score=149.20 Aligned_cols=384 Identities=14% Similarity=0.155 Sum_probs=230.9
Q ss_pred HHHHHhhHHHHHhHhCCCHHH----HHH-HHHHHHhHhhhhhhhhhhhcccCChHHHHHHHH-HHHHHHHHHHHHHhccC
Q 047229 44 SYMFALYSNDIKSSLGYDQTT----LNL-VSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSI-MNFFGFFMIWLSVSHRF 117 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~----~~~-~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~-~~~~g~~~~~~~~~~~~ 117 (599)
.+.++++......+-+.++.+ .+. .+....+-++..|+.|.++|+.|+||-.+.-.. +..+..+.++++
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i----- 109 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI----- 109 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh-----
Confidence 344555555555553334433 222 233344445569999999999998776554333 333333333333
Q ss_pred CCC-hhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHH
Q 047229 118 GAK-PHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLAC 195 (599)
Q Consensus 118 ~~~-~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~ 195 (599)
.. ...+..+++.++..++.......-.+++.+..++ +-++..++-.....+|+.+.-.+....+...
T Consensus 110 -~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~---------- 178 (438)
T COG2270 110 -PPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALG---------- 178 (438)
T ss_pred -CCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcc----------
Confidence 21 2344455677888888887777777888888864 4677777765555577665433221111000
Q ss_pred HHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhh
Q 047229 196 LPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIK 275 (599)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (599)
+...- ...+-..|+......+-.+. ..++| .++..+|.....+
T Consensus 179 -~~~~~---~~~l~~l~~~~~~~~ri~~~-------l~A~W--------------------------~li~~iPm~~~v~ 221 (438)
T COG2270 179 -QQTGI---TIILLGLPPADGEDVRITGL-------LAALW--------------------------WLLFALPMILNVH 221 (438)
T ss_pred -cccce---eEEeeccCccccccchhHHH-------HHHHH--------------------------HHHHHhHHHhccc
Confidence 00000 00011112211222232222 22222 3334455444333
Q ss_pred hhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhc
Q 047229 276 QELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAID 355 (599)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 355 (599)
+.++...+. ... -...-++-..+++++.++++....+++.++..=...+...
T Consensus 222 ~~~~~~~~~-~~~---------------------------l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~ 273 (438)
T COG2270 222 DAEKISSPP-PTA---------------------------LRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILA 273 (438)
T ss_pred ccccccccc-hHH---------------------------HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHH
Confidence 222100000 000 0000011123467777777777777777666555555666
Q ss_pred chHHHHH-HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH-HHHHHHHHHhhhhhHHHH
Q 047229 356 NMGQIGK-ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFS-CIGYLLIAFAVHNSLYFA 433 (599)
Q Consensus 356 ~~~~~~~-~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 433 (599)
....+.. ++|++..+...+.....+...+|.++.|++.||+|.|+ ++..+.++. .++...+....+...++.
T Consensus 274 ~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~------vl~~~lvi~~~~~~~~~~~~~~~~f~i~ 347 (438)
T COG2270 274 MGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKP------VLMIGLVILSIAALYLIFLEGELDFWIL 347 (438)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCce------eehHHHHHHHHHHHHHHHccccHHHHHH
Confidence 6666666 68999999988889999999999999999999998774 333333333 333333333345567777
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHH
Q 047229 434 SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFV 513 (599)
Q Consensus 434 ~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 513 (599)
..++|+..|+..+..=++.++..|+++.+..+|++++.+...+. ++|.+.+.+.+.+ ++-+..+.
T Consensus 348 gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~-~gp~lv~v~t~iT--------------g~~r~g~~ 412 (438)
T COG2270 348 GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASF-LGPFLVAVITQIT--------------GSSRAGVL 412 (438)
T ss_pred HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHH-HHHHHHHHHHHHh--------------cchhhHHH
Confidence 88999999999999999999999999999999999999999976 9999999999984 45777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 047229 514 TISAATFFACIVSIIL 529 (599)
Q Consensus 514 ~~~~~~~i~~i~~~~~ 529 (599)
...++.+++.++.+..
T Consensus 413 ~i~vll~iGl~~L~~v 428 (438)
T COG2270 413 SIIVLLLIGLLLLLRV 428 (438)
T ss_pred HHHHHHHhhHhhEEee
Confidence 7777666666654433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-14 Score=149.49 Aligned_cols=339 Identities=10% Similarity=-0.006 Sum_probs=183.8
Q ss_pred HHHHHhHhCCCHHHHHHH-HHHHHhHhhhhhhhhhhhcc----cCChH-HHHHHHHHHHHHHHHHHHHHhccCCCChhHH
Q 047229 51 SNDIKSSLGYDQTTLNLV-SFFKDLGGNLGVLAGLTYEV----APPWI-VLLSGSIMNFFGFFMIWLSVSHRFGAKPHVW 124 (599)
Q Consensus 51 ~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr----~G~r~-~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (599)
...+.+.+|+++..++.+ ...-.+-++..|+.|.++|| +|||+ -+++|.+.++++.++++... ... ....+.
T Consensus 33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~~s-~~~~~~ 110 (460)
T PRK11462 33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-DLS-MNGKMI 110 (460)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-CCC-cchHHH
Confidence 345678899999999995 44555556679999999997 68765 55567777777766553321 111 112244
Q ss_pred HHHHHHHHHhccccccchhHHHHHhhcCC--CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 047229 125 QMCLYMLIGANSQSFPNTGALVTCVKNFP--ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPI 202 (599)
Q Consensus 125 ~l~~~r~l~G~g~g~~~~~~~~~~~~~fp--~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (599)
.+++.-++..++......+-.++..+..+ ++|.+..++-..+..+|..+++.+...+.. .
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~------------------~ 172 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN------------------L 172 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 55556566677777777666677777774 569999999887777776665444322110 0
Q ss_pred HhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhh
Q 047229 203 VFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWK 282 (599)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (599)
. .. .+....+..... ..++..++.. .+.+...++ +
T Consensus 173 -----~---g~---~~~~~g~~~~~~---i~~ii~~i~~---------------------------~i~~~~~kE--~-- 207 (460)
T PRK11462 173 -----I---GG---DNKPLGFQGGIA---VLSVVAFMML---------------------------AFCFFTTKE--R-- 207 (460)
T ss_pred -----h---CC---CchhhhHHHHHH---HHHHHHHHHH---------------------------HHHHhccee--c--
Confidence 0 00 000111111110 1111100000 000000000 0
Q ss_pred chhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHH
Q 047229 283 GNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGK 362 (599)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (599)
++ .++++......++..++|+.++.+....++.............++.+
T Consensus 208 --------------~~-----------------~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~ 256 (460)
T PRK11462 208 --------------VE-----------------APPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVT 256 (460)
T ss_pred --------------cC-----------------CCccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Confidence 00 00000011224567788888877665554443333333333334444
Q ss_pred HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHH-HHHHHHHHHHHhh--hhhHHHHHHHHHH
Q 047229 363 ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVIL-FSCIGYLLIAFAV--HNSLYFASIIIGF 439 (599)
Q Consensus 363 ~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~i~~~l~g~ 439 (599)
...-++...+.+.....++++++.+++++++||+++|+ ....+.. ..+.+.+++.... ....++..++.|+
T Consensus 257 y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 330 (460)
T PRK11462 257 WILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT------IFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGV 330 (460)
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 33222233445566778889999999999999998774 2222222 2222222222222 2223444455677
Q ss_pred HhhhHHHHHHHHHHHhhC-------CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhh
Q 047229 440 CLGAQLSLLVTIISELFG-------LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREA 492 (599)
Q Consensus 440 ~~g~~~~~~~~~~~e~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~ 492 (599)
+.+...+...++.+|... .+..|..++.......+|.. +++.+.|.+.+..+
T Consensus 331 ~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a-lg~~i~g~iL~~~G 389 (460)
T PRK11462 331 LHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA-FGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 776666666667776654 45556666776677777765 77888888877643
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-13 Score=133.81 Aligned_cols=369 Identities=15% Similarity=0.103 Sum_probs=237.1
Q ss_pred HHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhcccC-----ChHH-HHHHHHHHHHHHHHHHHHHhccCC-----C-C
Q 047229 53 DIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVAP-----PWIV-LLSGSIMNFFGFFMIWLSVSHRFG-----A-K 120 (599)
Q Consensus 53 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~-~~ig~~~~~~g~~~~~~~~~~~~~-----~-~ 120 (599)
-|..|++++..-.+.+.....+.....+..|..+|+++ ||.. ++.|.++...|..+...+..-... . .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 46788999999999888887788888999999999999 6654 455666655554443333222110 0 1
Q ss_pred hhHHH--HHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 047229 121 PHVWQ--MCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNT-KALILLLACL 196 (599)
Q Consensus 121 ~~~~~--l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~-~~~~~~~~~~ 196 (599)
...+. ..+.-++.|+|.+...++...++.|..| ++|+++.++...+.-+|.++++.+.+.++++.. .+..-.....
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 22222 2345668899999998889999999996 679999999999988888888888887776422 1111111111
Q ss_pred HHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhh
Q 047229 197 PTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQ 276 (599)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (599)
+.+ .+...+. ..+ +.
T Consensus 165 a~i-------------------------------------~~~l~~i---------------------------a~w-g~ 179 (403)
T PF03209_consen 165 ALI-------------------------------------ALLLNLI---------------------------ALW-GQ 179 (403)
T ss_pred HHH-------------------------------------HHHHHHH---------------------------HHH-hc
Confidence 110 0000000 000 00
Q ss_pred hhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcc
Q 047229 277 ELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDN 356 (599)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (599)
+++ .++..+ ..++++......+++++.+|+........++.......-...
T Consensus 180 E~r-------------------~~~~~~----------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~i 230 (403)
T PF03209_consen 180 EPR-------------------RSRRAA----------AAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVI 230 (403)
T ss_pred ccC-------------------Cccccc----------CCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHH
Confidence 000 000000 011111222234677778887777666666655544444455
Q ss_pred hHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH----hhhhhHH
Q 047229 357 MGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF----AVHNSLY 431 (599)
Q Consensus 357 ~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 431 (599)
+.+|--+ +|++..++..+....+.+..+|-.+.|++..|-.+++ .....++...++++.++.. .+.+.+.
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-----~~a~~G~~~~~~~f~lii~a~~~~~~~~~~ 305 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-----RTAALGCLLGALAFALIILAGPLGSPWLFR 305 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 5666555 5999999999999999999999999999877422221 1334455555555444332 2345677
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcC-CCCccccCcchHHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG-KGGLNCIGARCYRV 510 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 510 (599)
...+++|++.|...........+..++++.|...|.....+.++.. ++..++|.+.|....-.+ ++ ..+|..
T Consensus 306 ~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G-lg~~~GG~~~D~~~~~~~~~~------~~aY~~ 378 (403)
T PF03209_consen 306 PGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG-LGTFLGGALRDLVRALFGNSP------ALAYGV 378 (403)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCc------chHHHH
Confidence 7889999999999888888999999999999999999988888755 788889988887643332 11 245888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047229 511 AFVTISAATFFACIVSI 527 (599)
Q Consensus 511 ~f~~~~~~~~i~~i~~~ 527 (599)
.|.+=++..++++++..
T Consensus 379 VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 379 VFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777766665555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-13 Score=136.16 Aligned_cols=344 Identities=12% Similarity=0.071 Sum_probs=207.6
Q ss_pred HHHhHhCCCHHHHHHHHH-HHHhHhhhhhhhhhhhcc----cCC-hHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHH
Q 047229 53 DIKSSLGYDQTTLNLVSF-FKDLGGNLGVLAGLTYEV----APP-WIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQM 126 (599)
Q Consensus 53 ~l~~~~~~s~~~~~~~~~-~~~~~~~~~~~~G~l~Dr----~G~-r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l 126 (599)
.+.+.+|+++...|.+.. .-.+-++..|+.|.+.|| +|| |+-++.|.+.+++.+.+++.... .. ...+....
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~-~~-~~~k~~ya 115 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD-FS-MTGKLIYA 115 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC-cc-cCcchHHH
Confidence 467889999999999544 445555669999999998 564 45666777877777766654421 11 12345555
Q ss_pred HHHHHHHhccccccchhHHHHHhhcC--CCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNF--PESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVF 204 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~f--p~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (599)
++--.+.+++......+-.++..+.. |++|.+..++-..+..+|..+...+...+.+. +
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~-----------------~-- 176 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL-----------------F-- 176 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------h--
Confidence 66667888888888877777778877 46799999998887777766654443322210 0
Q ss_pred hhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhch
Q 047229 205 IPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGN 284 (599)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (599)
. +.+....|.....+....+...+.+. ..-.||+..
T Consensus 177 -------g---~~~~~~g~~~~~~~~~vi~~i~~l~~-----------------------------~~~v~ER~~----- 212 (467)
T COG2211 177 -------G---GGDKALGYQGTALVLGVIGVILLLFC-----------------------------FFNVKERVV----- 212 (467)
T ss_pred -------C---CCcchhhHHHHHHHHHHHHHHHHHHH-----------------------------HHHhhcccC-----
Confidence 0 00001111111111000000000000 000111110
Q ss_pred hhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-
Q 047229 285 KLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA- 363 (599)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 363 (599)
++.+ .+...+++....+..+++|+.+..+++..++.............+|.+.
T Consensus 213 ------------~~~~--------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~ 266 (467)
T COG2211 213 ------------ETQP--------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV 266 (467)
T ss_pred ------------cccc--------------CcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE
Confidence 0000 0000111112234567899988877776655544333333333444443
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHH
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV---HNSLYFASIIIGFC 440 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~g~~ 440 (599)
+|.+.............+..++.++..++.+|+|+|+ +..++.++.+++.+++.+.. ....++..++.+++
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~------~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g 340 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK------LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVG 340 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH------HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 4766666767777777888888999999999999886 56666777777666655433 22344555777889
Q ss_pred hhhHHHHHHHHHHHhh-------CCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhh
Q 047229 441 LGAQLSLLVTIISELF-------GLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALK 494 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~-------~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~ 494 (599)
.+...+...++++|.. +.|..|..++......-+|.. ++..+.|++.+..+-.
T Consensus 341 ~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a-la~~~~g~~L~~~Gyv 400 (467)
T COG2211 341 TGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA-LAGFIPGWILGAIGYV 400 (467)
T ss_pred hhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCC
Confidence 9988888888888764 567888899998887777765 6777788887776543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-11 Score=119.26 Aligned_cols=155 Identities=14% Similarity=0.077 Sum_probs=116.8
Q ss_pred HhhHHHHHhHhC----CCHHHHHH-HHHHHHhHhhhhhhhhhhhccc-CChHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 48 ALYSNDIKSSLG----YDQTTLNL-VSFFKDLGGNLGVLAGLTYEVA-PPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 48 ~~~~~~l~~~~~----~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr~-G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
+.+.-++..+++ ++.++..- ++.+..+.+...+++|+++||+ |+|+++.+|.++..+|.++++.. + ..
T Consensus 42 aiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~--~----~~ 115 (498)
T COG3104 42 AILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS--S----VS 115 (498)
T ss_pred HHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc--c----cc
Confidence 444555666665 98888766 6777777778899999999997 99999999999999998877443 1 02
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCCC---CccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE---SRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPT 198 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~---~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 198 (599)
+...++++.++.++|.|..=+....++.+.+|+ +|-...++...+.++|+.+.+.+...+.+...+..-+-.+.+-.
T Consensus 116 ~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm 195 (498)
T COG3104 116 GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGM 195 (498)
T ss_pred cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 466788888889999999999999999999953 36677777778888999999888888776655555555555554
Q ss_pred HHHHHhhhcc
Q 047229 199 IVPIVFIPTI 208 (599)
Q Consensus 199 ~~~~~~~~~i 208 (599)
..+++.....
T Consensus 196 ~~gl~~f~~~ 205 (498)
T COG3104 196 IIGLVIFLLG 205 (498)
T ss_pred HHHHHHHHHc
Confidence 4554444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-15 Score=156.75 Aligned_cols=390 Identities=12% Similarity=0.015 Sum_probs=3.0
Q ss_pred HhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhcc----------
Q 047229 48 ALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHR---------- 116 (599)
Q Consensus 48 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~---------- 116 (599)
....+++++.|+++.++.|++.+.+-++.++ .++..++.+|..|-+.+-+|.++.++|++++++-.--.
T Consensus 23 ~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~ 102 (539)
T PF03137_consen 23 NSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN 102 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence 5667789999999999999998888888866 77899999999888899999999999988764421000
Q ss_pred ------------------------------CCCCh--hHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHH
Q 047229 117 ------------------------------FGAKP--HVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLL 163 (599)
Q Consensus 117 ------------------------------~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~ 163 (599)
..... -+..++++.++.|+|....++...+++.|+.+ ++-+..+|++
T Consensus 103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~ 182 (539)
T PF03137_consen 103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL 182 (539)
T ss_dssp -------------------------------------------------SSS----------------------------
T ss_pred cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhh
Confidence 00001 13556679999999999999999999999996 5689999999
Q ss_pred HHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhcccccccc-----CCcchhhhHHHHHHHHHHHHHHHH
Q 047229 164 KGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRIIKIA-----RPENELKVFHSFLYILLVLAGFIM 238 (599)
Q Consensus 164 ~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 238 (599)
.+...+|++++-.+++.+++-+.. +-+.+++. ....|-..|| .+++ ..+..
T Consensus 183 ~~~~~lGPa~Gf~lg~~~L~~yvD-------------------~~~~~~~~~~i~p~dp~WvGAWW-LGfl--i~g~~-- 238 (539)
T PF03137_consen 183 YAMSILGPALGFLLGSFCLRIYVD-------------------FPKVPPDGVGITPSDPRWVGAWW-LGFL--ICGIL-- 238 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhhccHHHHHHHHHHHHhceeC-------------------CccccccCCCCCCCCccHHHHHH-HHHH--HHHHH--
Confidence 999999988887776665532100 00000000 0111111222 1111 11111
Q ss_pred HHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhh-hcccCC
Q 047229 239 VTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFS-LKNVSK 317 (599)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 317 (599)
.++..+|+..+-|+-++..+.++++...+ ++.+..++++..+. ..+...
T Consensus 239 ------------------------~~l~aipl~~FPk~lp~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 288 (539)
T PF03137_consen 239 ------------------------LFLSAIPLFFFPKKLPGTSERQEEKESSE------RKEEDSDKDSFKDPKSKKSFG 288 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------HHHHHHHHHcCCccCCCcccccchhhhhh------cchhhhhhhcccccccccchh
Confidence 22334444443333332211000000000 00000000000000 000001
Q ss_pred CCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHH-HHHHHHHHhhhhhhh
Q 047229 318 KPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISI-WNFLGRIVAGFASEI 395 (599)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i-~~~ig~~~~g~l~dr 395 (599)
+..+.-....+++++||.|....+...+......++..+.|-|.+. .+.++.+++++.+...+ +..+|.+++|++..|
T Consensus 289 ~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk 368 (539)
T PF03137_consen 289 KSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKK 368 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEE
Confidence 1122334457889999999888888877777777888889988887 59999999988866554 678899999999999
Q ss_pred hhhhccCCchHHHHHHHHHHHH--HHHHHHHhh---------h----------------------------------h--
Q 047229 396 FLAKYKVPRPLLLTLVILFSCI--GYLLIAFAV---------H----------------------------------N-- 428 (599)
Q Consensus 396 ~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~----------------------------------~-- 428 (599)
+.-+.+...++.+....+..+. ..+++.-.+ . .
T Consensus 369 ~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~ 448 (539)
T PF03137_consen 369 FKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCC 448 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccc
Confidence 8543211111222221111111 111111000 0 0
Q ss_pred -hHHH---HHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 429 -SLYF---ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 429 -~~~i---~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
.++. ..++..+..+..........-..+++++|+.+.|+..+...+-+.+-+|+++|.+.|..
T Consensus 449 ~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 449 NKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 0111 11111222222223333455678899999999999987766655679999999999984
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-11 Score=122.26 Aligned_cols=157 Identities=12% Similarity=0.053 Sum_probs=112.1
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHH--HHhhHHHHHh-HhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCC-hHHH
Q 047229 21 LHLLDSRWFMFFATLLIMSVNGSSYM--FALYSNDIKS-SLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPP-WIVL 95 (599)
Q Consensus 21 ~~~~~~~w~~~~~~~~~~~~~g~~~~--~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~-r~~~ 95 (599)
...++.+|..+..+.+.++..+..++ +....|++++ |.+.+.+..||+.....++.. ..+.+|+...|.+. |+-+
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl 105 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL 105 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence 33446788777776666666555332 2334455554 577888899997666677765 49999999999985 7777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcC-CCCccchhHHHHHhhhhhHHHH
Q 047229 96 LSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNF-PESRGVVIGLLKGLIGLSGAIM 174 (599)
Q Consensus 96 ~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~f-p~~rg~~~g~~~~~~~lg~~i~ 174 (599)
+.|.++..+|.++..+. ... ++..-+.++++|++.|+|.|.. ...-.++++.- +++|.++++....+..+|..+|
T Consensus 106 i~s~ii~~~g~llY~~l-~~~--~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLAL-AYV--PNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred HHHHHHHHHHHHHHHHH-Hhc--ccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 88899999998776222 222 2236788889999999998865 45566666644 7889999999988888888888
Q ss_pred HHHHHHh
Q 047229 175 TQIYHAV 181 (599)
Q Consensus 175 ~~i~~~~ 181 (599)
|.+...+
T Consensus 182 p~~q~~f 188 (488)
T KOG2325|consen 182 PTIQLAF 188 (488)
T ss_pred HHHHHHH
Confidence 7776554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-12 Score=130.35 Aligned_cols=171 Identities=12% Similarity=0.160 Sum_probs=130.6
Q ss_pred HHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 047229 336 MLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFS 415 (599)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 415 (599)
++..++..++.......+...+|.+.+++|.+..+.+++.+...++..+++++.|++.||+|+|+ ++..+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~~~~~~~~~ 98 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY------FMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch------hHHHHHHHH
Confidence 33444444444443344556678888889999999999999999999999999999999998875 556666666
Q ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhh
Q 047229 416 CIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALK 494 (599)
Q Consensus 416 ~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~ 494 (599)
.++.++....+ ...+++..++.|++.|..++....++.|.+|+++++++.|+.+.+..+|.. ++|.+.+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~---- 173 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGA-LIPLVVGAIALH---- 173 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc----
Confidence 66665554443 334455566778888888888889999999999999999999999999976 889889988876
Q ss_pred cCCCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 047229 495 QGKGGLNCIGARCYRVAFVTISAATFFACIVSII 528 (599)
Q Consensus 495 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 528 (599)
.+|++.|++.+++.++..+...+
T Consensus 174 -----------~gw~~~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 174 -----------YGWRYGMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999887765554444333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=119.66 Aligned_cols=175 Identities=16% Similarity=0.171 Sum_probs=154.9
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 414 (599)
..+.+.+..|+....++.....+|++.+++|.|..+++...+.+..+..++.++...+.||+.||+ ++.....+
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~------lLl~~l~l 87 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRR------LLLGLLAL 87 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH------HHHHHHHH
Confidence 345667777777788888999999999999999999999999999999999999999999997775 77788888
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhh
Q 047229 415 SCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREAL 493 (599)
Q Consensus 415 ~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~ 493 (599)
.+++.++....+ ...+.+.-++.|+..|..++...+++.++.|+++++.+.++++++..++.. +|.+++.++-|.
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v-~GvPLGt~ig~~--- 163 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATV-LGVPLGTFLGQL--- 163 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHH-HhccHHHHHHHH---
Confidence 888887766554 556778889999999999999999999999999999999999999999964 999999999998
Q ss_pred hcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 047229 494 KQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVL 531 (599)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 531 (599)
.+||.+|+..+++++++.+..+...+
T Consensus 164 ------------~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 164 ------------FGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46999999999999988888777666
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=119.18 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=132.4
Q ss_pred hhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhh-hHH
Q 047229 353 AIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHN-SLY 431 (599)
Q Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 431 (599)
+....|.+.++.|+|..+.+.+.+.+.+...++..+.|.++||.+.|+ .+..+.++.++..+++.+.+.. .+.
T Consensus 48 F~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~------fm~~gLilsai~nil~Gfs~s~~~~~ 121 (448)
T COG2271 48 FNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY------FMAFGLILSAIVNILFGFSPSLFLFA 121 (448)
T ss_pred HhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce------eehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444567777778899999999999999999999999999999997765 6777778888877777766533 355
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHH--HHHHhhhhhhcCCCCccccCcchHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVA--GRLYDREALKQGKGGLNCIGARCYR 509 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (599)
+...+-|++.|..+|.....+..-++++.||+..++.+++.++|+. +.|++. +.+.++ .+|+
T Consensus 122 ~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGa-l~~~~~~la~~~~~---------------~~w~ 185 (448)
T COG2271 122 VLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGA-LAPLVALLAFFAFH---------------GGWR 185 (448)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccc-hHHHHHHHHHHHhc---------------cchh
Confidence 6667789999999999999999999999999999999999999998 556666 666665 4699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 510 VAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 510 ~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+|++-++++++..++.+++.+.+.
T Consensus 186 ~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 186 AAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999988877777766655444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=124.62 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 334 IDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
++++.+.+..++..........+++.++++ +|+++.+.++..+...+...+++++.|+++||+|||+ .+..+.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~------~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR------YMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch------hHHHHH
Confidence 346677777777666666667777877754 7999999999999999999999999999999999875 445555
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 413 LFSCIGYLLIAFAVH-NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 413 ~~~~~~~~~~~~~~~-~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
++..++.+++...+. ...++...+.+.+.+...+....+..|.+|+++++++.|+.+...++|.. ++|.+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~-igp~l~~~l~~~- 158 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWT-VGPPLGTLLVMQ- 158 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh-
Confidence 555555555544433 23334445556666666777888899999999999999999999999876 899999987643
Q ss_pred hhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 492 ALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
+|+..|++.+++.+++.+...+..++
T Consensus 159 ---------------g~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 159 ---------------SINLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred ---------------ccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 37888888877777665555444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-11 Score=123.31 Aligned_cols=289 Identities=12% Similarity=0.054 Sum_probs=184.0
Q ss_pred HHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHH------------
Q 047229 47 FALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSV------------ 113 (599)
Q Consensus 47 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~------------ 113 (599)
+......+++.|+++.++.|++.+.+-++..+ ..+..+..-|.-|-+.+-+|.+++++|.+++++-.
T Consensus 116 ~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~ 195 (735)
T KOG3626|consen 116 FNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEV 195 (735)
T ss_pred hhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhh
Confidence 45566789999999999999999999999876 67999999999999999999999999988776540
Q ss_pred ---hccCC---------------------------CChh-HH-HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchh
Q 047229 114 ---SHRFG---------------------------AKPH-VW-QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVI 160 (599)
Q Consensus 114 ---~~~~~---------------------------~~~~-~~-~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~ 160 (599)
..... .+++ ++ +++++.++.|+|....++....++.|... ++-...+
T Consensus 196 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYl 275 (735)
T KOG3626|consen 196 IKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYL 275 (735)
T ss_pred hhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHH
Confidence 00000 0011 33 45568899999999999999999999996 5689999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhcccc--cccc-C--CcchhhhHHHHHHHHHHHHH
Q 047229 161 GLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRI--IKIA-R--PENELKVFHSFLYILLVLAG 235 (599)
Q Consensus 161 g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~-~--~~~~~~~~~~~~~~~~~~~~ 235 (599)
|++.+...+|++++-.+++....- ++.. .+.. . ...|-..|| .+.+ +. +.
T Consensus 276 gi~~~~~~lGPaiGfllgS~~l~l----------------------YvD~~~~~~~it~~DPrWIGAWW-lGFL-i~-g~ 330 (735)
T KOG3626|consen 276 GILYSMAILGPAIGFLLGSFCLKL----------------------YVDFGLSPIGITPTDPRWIGAWW-LGFL-IC-GA 330 (735)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHe----------------------eeccccCCCCCCCCCcchhhHHH-HHHH-HH-HH
Confidence 999999989998887776665431 1111 0000 0 111222222 1111 11 11
Q ss_pred HHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhccc
Q 047229 236 FIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNV 315 (599)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (599)
. .++..+|++.+-++.++..++..+...+. ..++++ ..+.+ ..
T Consensus 331 ~--------------------------~~~~a~p~f~fPk~lp~~~~~~~~~~~~~--~k~~~~-~~~~~--------~~ 373 (735)
T KOG3626|consen 331 L--------------------------LLFSAVPLFFFPKELPKSQKRKRARDLHV--LKTESG-GAKSD--------KT 373 (735)
T ss_pred H--------------------------HHHHHHHHHhCcccCccccccchhhhhcc--cccccc-cccCC--------cc
Confidence 1 22222333333232222211100000000 000000 00000 00
Q ss_pred CCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHH-HHHHHHHHHhhhhh
Q 047229 316 SKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLIS-IWNFLGRIVAGFAS 393 (599)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~-i~~~ig~~~~g~l~ 393 (599)
..+.-++-....+++++||.|....+...+......++..++|-|++. +|.++..+..+.+..+ .+..+|.+++|++.
T Consensus 374 ~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~ii 453 (735)
T KOG3626|consen 374 FGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLII 453 (735)
T ss_pred hhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceee
Confidence 000011223457889999999998888888888888899999999987 5999999999886655 45678889999999
Q ss_pred hhhh
Q 047229 394 EIFL 397 (599)
Q Consensus 394 dr~g 397 (599)
.|+.
T Consensus 454 kkfk 457 (735)
T KOG3626|consen 454 KKFK 457 (735)
T ss_pred eeec
Confidence 8884
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=126.41 Aligned_cols=175 Identities=11% Similarity=0.164 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHH
Q 047229 334 IDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVIL 413 (599)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 413 (599)
+.+|.+.+..++.......+...+|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~------~~~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN------IFFTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH------HHHHHHH
Confidence 3567777777777666666777899999999999999999989999999999999999999999885 4445555
Q ss_pred HHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhh
Q 047229 414 FSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREA 492 (599)
Q Consensus 414 ~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~ 492 (599)
+..++.+..... +...+++..++.|++.+...+....++.|.+|++++++++|+......+|.. ++|.+.|.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~g~l~~~-- 160 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPL-LGPALGGLLVEY-- 160 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhh--
Confidence 555555444333 3445667778889999999999999999999999999999999998889875 899999999887
Q ss_pred hhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 493 LKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
.+|++.|++...++.++.++.....
T Consensus 161 -------------~gw~~~f~~~~~~~~l~~~~~~~~~ 185 (471)
T PRK10504 161 -------------ASWHWIFLINIPVGIIGAIATLMLM 185 (471)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999988777666666554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=125.44 Aligned_cols=157 Identities=12% Similarity=0.106 Sum_probs=116.4
Q ss_pred hcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-----hhh
Q 047229 354 IDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-----VHN 428 (599)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 428 (599)
....|. .++.|.++.+.++..+...++..++.++.|+++||+|+|+ .+..+.++.+++.+..... +..
T Consensus 47 ~~~~p~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (438)
T TIGR00712 47 ALAMPY-LVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV------FLPAGLILSAAVMLLMGFVPWATSSIA 119 (438)
T ss_pred HhhhHH-HHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce------ehHHHHHHHHHHHHHHhccccccchHH
Confidence 334444 4456999999999999999999999999999999999875 3444555555554443321 122
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchH
Q 047229 429 SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCY 508 (599)
Q Consensus 429 ~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (599)
.+.+..++.|++.+..++.....+.|.+|+++|+++.|+.++...+++. ++|.+.+...+.. .+|
T Consensus 120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~l~~~~~~~~--------------~~w 184 (438)
T TIGR00712 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG-IPPLLVLLGMAWF--------------NDW 184 (438)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhH-HHHHHHHHHHHHh--------------hhh
Confidence 3445566778888888888888999999999999999999998888876 6776666555431 359
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 509 RVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 509 ~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
+..|++.++++++..+...++.++
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999888877766665555544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=123.43 Aligned_cols=161 Identities=21% Similarity=0.274 Sum_probs=128.5
Q ss_pred cchhhhhcchH-HHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-h
Q 047229 348 GGALAAIDNMG-QIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-A 425 (599)
Q Consensus 348 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~ 425 (599)
.........++ .+.+++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+.++.+++.++... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~ 83 (352)
T PF07690_consen 10 FGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR------VLIIGLLLFALGSLLLAFAS 83 (352)
T ss_dssp HHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee------eEeehhhhhhhHHHHhhhhh
Confidence 33333445566 555678999999999999999999999999999999999885 667777777776444333 3
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCc
Q 047229 426 VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGA 505 (599)
Q Consensus 426 ~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~ 505 (599)
+.+.+++..++.|++.+...+....++.|.+|+++++...++......+|.. ++|.+.+.+.+.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~--------------- 147 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSI-LGPLLGGFLISY--------------- 147 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCCH---------------
T ss_pred hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhh-cccchhhhhhhc---------------
Confidence 4446677788899999999999999999999999999999999999999975 899999988866
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 506 RCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 506 ~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
.+|+..|++.+++.++..++...+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 148 FGWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp CHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred cccccccccccchhhhhhhhHhhhh
Confidence 4588899999888887766443443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-11 Score=122.22 Aligned_cols=161 Identities=13% Similarity=0.181 Sum_probs=128.5
Q ss_pred chhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-h
Q 047229 349 GALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-H 427 (599)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 427 (599)
....+...+|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+ .+..+.++.+++.++....+ .
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~------~~~~~~~~~~~~~~~~~~~~~~ 93 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP------VLLLGLFIFALSSLGLALSNNI 93 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH------HHHHHHHHHHHHHHHHHHHccH
Confidence 3344555678888889999999999999999999999999999999998875 55666666666665554433 4
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcch
Q 047229 428 NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARC 507 (599)
Q Consensus 428 ~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 507 (599)
..+.+..++.|++.+...+....++.|.+|++++++..|+.+....++.. ++|.+.+.+.+. .+
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~---------------~~ 157 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPA-VAPLLGGYILVW---------------LS 157 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------------cC
Confidence 45666778889999999999999999999999999999999999899875 889999988876 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047229 508 YRVAFVTISAATFFACIVSIILVL 531 (599)
Q Consensus 508 ~~~~f~~~~~~~~i~~i~~~~~~~ 531 (599)
|+..|++.+++.++..+...+..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899998888777666665554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-11 Score=122.07 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHH
Q 047229 334 IDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVIL 413 (599)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 413 (599)
+.++.+.+..++...........+|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+ .+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH------ILLFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH------HHHHHHH
Confidence 3456666666665555556667788888889999999999999999999999999999999998875 5666766
Q ss_pred HHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhh
Q 047229 414 FSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREA 492 (599)
Q Consensus 414 ~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~ 492 (599)
+.+++.++.... +...+++..++.|++.+...+....++.|.+++++++.+.++...+..++.. ++|.+.+.+.+.
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~-- 153 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANL-LGIPLGTYLSQE-- 153 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHH-HhccHHHHHhhh--
Confidence 777766665544 3455677788889999988888888999999988999999998888888875 788888888776
Q ss_pred hhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 047229 493 LKQGKGGLNCIGARCYRVAFVTISAATFFACIVSI 527 (599)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 527 (599)
.+|+..|++.+++.++..+...
T Consensus 154 -------------~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 154 -------------FSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 3599999988877666555433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=130.06 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=122.0
Q ss_pred cchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHH
Q 047229 355 DNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFA 433 (599)
Q Consensus 355 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 433 (599)
..+|.+..+.|.+..+.+++.+...++.++|.+++|+++||+|||+ .+.++.++.+++.++..+. +...+++.
T Consensus 188 ~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~------~lii~lil~~i~~ll~afa~s~~~llv~ 261 (742)
T TIGR01299 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ------CLLICLSVNGFFAFFSSFVQGYGFFLFC 261 (742)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456666778999999999999999999999999999999999886 4555555555555444433 34556777
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHH
Q 047229 434 SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFV 513 (599)
Q Consensus 434 ~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 513 (599)
.++.|++.|+..+..+.++.|.+|++.||...++..+...+|.. +++.++..+....+.... ....+...+|+..++
T Consensus 262 R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~i-la~~la~~il~~~G~~~~--~g~~~~~~gWR~l~~ 338 (742)
T TIGR01299 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI-YAAAMAWAIIPHYGWSFQ--MGSAYQFHSWRVFVI 338 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhc--cccccccccHHHHHH
Confidence 88899999999999999999999999999999999988888875 677666665543221000 000111246898888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 047229 514 TISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 514 ~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
+.++.+++.+++. ++.++..+
T Consensus 339 i~~lp~ll~ll~~-~~lPESPr 359 (742)
T TIGR01299 339 VCAFPCVFAIGAL-TFMPESPR 359 (742)
T ss_pred HHHHHHHHHHHHH-HHcCCCHH
Confidence 8777666554443 34444433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.2e-11 Score=120.66 Aligned_cols=154 Identities=11% Similarity=0.136 Sum_probs=124.7
Q ss_pred hhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHH
Q 047229 353 AIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLY 431 (599)
Q Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 431 (599)
....+|.+.+++|.++.+.++..+...++..++.+..|++.||+|||+ ++..+..+.+++.+..... +.+.++
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~ 101 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK------LLIGLFVLFIASHVLSALAWNFTVLL 101 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 334568888889999999999999999999999999999999999886 5666666666666555543 345566
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVA 511 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (599)
+..++.|++.+..++....++.|.+|+++|+.+.|+...+..++.. ++|++.+.+.+. .+|+..
T Consensus 102 ~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~-ig~~l~~~l~~~---------------~gw~~~ 165 (390)
T PRK03545 102 ISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMV-LGLPLGRVIGQY---------------LGWRTT 165 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHH-HHhhHHHHHHHH---------------hcHHHH
Confidence 6677888888888888889999999999999999999999999975 899988888776 359999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047229 512 FVTISAATFFACIVSII 528 (599)
Q Consensus 512 f~~~~~~~~i~~i~~~~ 528 (599)
|++.++++++..+....
T Consensus 166 f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 166 FLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988877666554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-11 Score=125.02 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=136.2
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHH---cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhh-hhhhccCCchHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKA---LGYPTHSIASFISLISIWNFLGRIVAGFASEI-FLAKYKVPRPLLLTL 410 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr-~g~r~~~~~~~~~~~ 410 (599)
.+|.+++..++.....+....+++.|+++ +|++..+++...+.+.++..++.+++|+++|| +|||+ .+..
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~------~l~~ 84 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK------TMVL 84 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH------HHHH
Confidence 45666666666666777788888988865 79999999999999999999999999999999 78886 6777
Q ss_pred HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCc---ccchhhhhhccchhhhhHhhhhHHHH
Q 047229 411 VILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKH---YSTLYNVGSVSSPIGSYIFNVRVAGR 486 (599)
Q Consensus 411 ~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~---~g~~~g~~~~~~~ig~~i~~~~l~g~ 486 (599)
+.++.+++.+++...+ ...+++...+.|++.|...+...+++++.+|+++ ++.++++.+.+.++|.. ++|.+.+.
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~-ig~~l~g~ 163 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF-ISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH-HHHHHHHH
Confidence 7777777777666543 3445566777899999888889999999998754 88899999999999976 99999999
Q ss_pred HHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHH
Q 047229 487 LYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIV 525 (599)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 525 (599)
+.+. .+|+..|.+.++..+++.+.
T Consensus 164 l~~~---------------~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 164 IAEN---------------YGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHh---------------cChHHHHHHHHHHHHHHHHH
Confidence 9887 35999999877665555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-11 Score=124.09 Aligned_cols=157 Identities=16% Similarity=0.184 Sum_probs=124.3
Q ss_pred hhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHH
Q 047229 353 AIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLY 431 (599)
Q Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 431 (599)
+....|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+.++.+++..+.... +...++
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK------TLAVFIVIWGVFTGLQAFAGAYVSLY 86 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcce------eeHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 344456666778999999999999999999999999999999999886 3445555555555444433 445567
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVA 511 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (599)
+..++.|++.+...+....++.|.+|+++|+...++......+|.. ++|.+.+.+.+. .+|+..
T Consensus 87 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~---------------~~~~~~ 150 (399)
T TIGR00893 87 ILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGI-IGGPLVGWILIH---------------FSWQWA 150 (399)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHh---------------CCchHH
Confidence 7778889999999999999999999999999999999999999976 888888888776 358999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047229 512 FVTISAATFFACIVSIILVL 531 (599)
Q Consensus 512 f~~~~~~~~i~~i~~~~~~~ 531 (599)
|++.+++.++..+...++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 151 FIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred HHHHHHHHHHHHHHhhheec
Confidence 98887776666655544443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=120.17 Aligned_cols=152 Identities=12% Similarity=0.187 Sum_probs=124.6
Q ss_pred hhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhh
Q 047229 350 ALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHN 428 (599)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 428 (599)
.+.....+|.+.++.|.++.+.+...+...++..+++++.|++.||+|||+ .+..+..+.+++.++.... +.+
T Consensus 36 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~------~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
T PRK10213 36 EFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY------VVILFAVLLTLSCLLVSFANSFS 109 (394)
T ss_pred HHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH------HHHHHHHHHHHHHHHHHHHChHH
Confidence 334445678888889999999999999999999999999999999999886 5666666666666555443 345
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchH
Q 047229 429 SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCY 508 (599)
Q Consensus 429 ~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (599)
.+++..++.|++.+...+....++.|.+|+++++.+.++.....+++.. ++|.+.+.+.+. .+|
T Consensus 110 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~-ig~~l~~~l~~~---------------~gw 173 (394)
T PRK10213 110 LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALV-IAAPLGSFLGEL---------------IGW 173 (394)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh---------------cCH
Confidence 6777778899999999999999999999999999999999998899865 899999988876 359
Q ss_pred HHHHHHHHHHHHHHH
Q 047229 509 RVAFVTISAATFFAC 523 (599)
Q Consensus 509 ~~~f~~~~~~~~i~~ 523 (599)
+..|++.+++++++.
T Consensus 174 ~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 174 RNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988776655443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-10 Score=115.49 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=100.7
Q ss_pred HHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhcccC-----ChHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 47 FALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVAP-----PWIVLLSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 47 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
.....|.+++++|+++++.+.+.....+...+.++.|.++|-+. ||+-++++.++..++.+.+++. .. ...
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~-~~---~~~ 84 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL-PA---SES 84 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc-cc---ccc
Confidence 34566789999999999999998888888999999999999984 5666667777665554444332 11 124
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcC---CCCccchhHHHHHhhhhhHHHHHHHHHHhcC
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNF---PESRGVVIGLLKGLIGLSGAIMTQIYHAVNG 183 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~f---p~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~ 183 (599)
+.....++-++..+|.......+-..+.|.- |++||...+.......+|++++..+.+.+.+
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5666667778889999999988888888876 4447888888888888888888777666554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=123.22 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=132.1
Q ss_pred HHhhcch-hHHHHHHHHHhhhcchhhhhcchHHHHH-HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhh-hhhhccCCc
Q 047229 328 LQAIFSI-DMLILFTATTCSIGGALAAIDNMGQIGK-ALGYPTHSIASFISLISIWNFLGRIVAGFASEI-FLAKYKVPR 404 (599)
Q Consensus 328 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr-~g~r~~~~~ 404 (599)
.+.+++| .+|..++..++.....+.+..+++.+++ ++|++..+++...+.+........+++|+++|| +|||+
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~---- 89 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR---- 89 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH----
Confidence 4455666 4788777777777777777788888874 579998888777776665555666789999999 58875
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCc--ccchhhhhhccchhhhhHhh
Q 047229 405 PLLLTLVILFSCIGYLLIAFAV--HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKH--YSTLYNVGSVSSPIGSYIFN 480 (599)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~--~g~~~g~~~~~~~ig~~i~~ 480 (599)
.+..+.++..++..++...+ ...+++...+.|++.|...+...++..|.+|+++ ++.++++.+++.++|+. ++
T Consensus 90 --~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~-~g 166 (500)
T PRK09584 90 --VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF-FS 166 (500)
T ss_pred --HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH-HH
Confidence 56666677776666655432 2234455677888888888888899999998653 45578888889999976 89
Q ss_pred hhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 047229 481 VRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSII 528 (599)
Q Consensus 481 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 528 (599)
|.+.|.+.|. .+|+..|.+.++..+++.+..++
T Consensus 167 p~i~g~l~~~---------------~g~~~~F~i~~i~~~i~~i~~~~ 199 (500)
T PRK09584 167 MLATPWLAAK---------------YGWSVAFALSVVGMLITVVNFAF 199 (500)
T ss_pred HHHHHHHHHh---------------hCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 35999999877665665544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=124.95 Aligned_cols=159 Identities=20% Similarity=0.158 Sum_probs=123.4
Q ss_pred hhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhH
Q 047229 352 AAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSL 430 (599)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 430 (599)
......|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+ .+..+.++..++.++.... +...+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (398)
T TIGR00895 35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR------VLLWSILLFSVFTLLCALATNVTQL 108 (398)
T ss_pred HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHccchHHH
Confidence 3445567777788999999999999999999999999999999999875 5555655555555554443 33445
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHH
Q 047229 431 YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRV 510 (599)
Q Consensus 431 ~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (599)
++..++.|++.+...+....++.|.+|+++++.+.|+......+|.. ++|.+.+.+.+. .+|+.
T Consensus 109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~---------------~g~~~ 172 (398)
T TIGR00895 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAA-VGGFLAGWLIPV---------------FGWRS 172 (398)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHH-HHHHHHHHHhhc---------------cccee
Confidence 66778889999999999999999999999999999999999999976 888888888776 34788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 047229 511 AFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 511 ~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
.|++.+++.++..++.....++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~ 194 (398)
T TIGR00895 173 LFYVGGIAPLLLLLLLMRFLPE 194 (398)
T ss_pred ehhhhhhHHHHHHHHHHHhCCC
Confidence 8887765555555554444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-11 Score=120.96 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=127.6
Q ss_pred HHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 047229 339 LFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIG 418 (599)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 418 (599)
++...++...........+|.+..+.+.++.+.+...+...++..++.++.|+++||+|||+ .+..+.++..++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~------~~~~~~~~~~~~ 77 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK------VMIGADLIRAVL 77 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH------HHHHHHHHHHHH
Confidence 34444444444444556677788888999999999999999999999999999999999886 445555444444
Q ss_pred HHHHHH-h-----hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhh
Q 047229 419 YLLIAF-A-----VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREA 492 (599)
Q Consensus 419 ~~~~~~-~-----~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~ 492 (599)
..+... . +...+++..++.|++.+...+...+++.|.+|+++++...|+.+....+|.. ++|.+.+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~-- 154 (365)
T TIGR00900 78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYI-VGPGIGGLMYAT-- 154 (365)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHH--
Confidence 433322 2 3445667778889999999999999999999999999999999999999975 899999998887
Q ss_pred hhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 047229 493 LKQGKGGLNCIGARCYRVAFVTISAATFFACIVSI 527 (599)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 527 (599)
.+|+..|++.++..+++.+...
T Consensus 155 -------------~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 155 -------------LGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3588888887766655544443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-11 Score=121.37 Aligned_cols=170 Identities=13% Similarity=0.141 Sum_probs=128.4
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhh-hhhccCCchHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIF-LAKYKVPRPLLLTLVI 412 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 412 (599)
.++.++...+......+.+..+++.|+++ +|+++.+++...+.+.....++.+++|+++||+ |||+ .+..+.
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr------~iliG~ 83 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM------AVMLGA 83 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH------HHHHHH
Confidence 45555555555556666677788888765 699999999999999999999999999999999 9886 566777
Q ss_pred HHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCC--cccchhhhhhccchhhhhHhhhhHHHHHH
Q 047229 413 LFSCIGYLLIAFAV--HNSLYFASIIIGFCLGAQLSLLVTIISELFGLK--HYSTLYNVGSVSSPIGSYIFNVRVAGRLY 488 (599)
Q Consensus 413 ~~~~~~~~~~~~~~--~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~--~~g~~~g~~~~~~~ig~~i~~~~l~g~~~ 488 (599)
+++.++.+++.... ....++...+..++.|...+..+++++|.+|++ .|.++.++.+...++|+. ++|.+.+.+.
T Consensus 84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~-iap~l~g~L~ 162 (493)
T PRK15462 84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSI-IAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHH-HHHHHHHHHH
Confidence 77777765554322 123444455566777777777788999999876 689999999999999976 9999999987
Q ss_pred hhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 047229 489 DREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVS 526 (599)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 526 (599)
+. .+|+..|.+.++..+++.+..
T Consensus 163 ~~---------------~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 163 EE---------------YSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred hh---------------hChHHHHHHHHHHHHHHHHHH
Confidence 76 359999988766555544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.6e-11 Score=121.20 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=133.2
Q ss_pred HHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCI 417 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 417 (599)
.+.+.+++...-........+.+.+++|.+..+.++..+.+.++..++.++.|++.||+|||+ .+..+.++..+
T Consensus 12 ~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~------~~~~~~~~~~~ 85 (412)
T TIGR02332 12 FLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR------WIAGIMVLWGI 85 (412)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH------HHHHHHHHHHH
Confidence 333444443333333444456666778999999999999999999999999999999999886 56666666666
Q ss_pred HHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcC
Q 047229 418 GYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG 496 (599)
Q Consensus 418 ~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~ 496 (599)
+.++.... +...+++..++.|++.+...+....++.|.+|+++|+.+.|+.+....+|.. +++.+.+.+.+....
T Consensus 86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~--- 161 (412)
T TIGR02332 86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA-LGLILSGYILALDGL--- 161 (412)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCC---
Confidence 66655543 3456777788899999999898889999999999999999999998889875 888888887653100
Q ss_pred CCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 497 KGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 497 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+..+|+..|++.++..++..++..++.++++
T Consensus 162 ------~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 162 ------MALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred ------CCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 00136999999987776665555555544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=119.98 Aligned_cols=169 Identities=11% Similarity=0.057 Sum_probs=129.4
Q ss_pred HHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLL 421 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 421 (599)
..+............+|.+.+++|.+..+.+...+...++..++.++.|+++||+|||+ .+..+.++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~------~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP------VAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH------HHHHHHHHHHHHHHH
Confidence 33333344444556788888889999999999999999999999999999999998875 555666666666555
Q ss_pred HHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCc
Q 047229 422 IAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGL 500 (599)
Q Consensus 422 ~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~ 500 (599)
....+ ...+++..++.|++.+...+....++.|.+|+++|++..++.+....++.. ++|.+.+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~-~~~~i~~~l~~~---------- 153 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPV-LAPVLGHLIMLK---------- 153 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC----------
Confidence 54433 344566677889988888888899999999999999999999888888865 788888777665
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 501 NCIGARCYRVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 501 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
.+|+..|++.++++++..++..+..++
T Consensus 154 -----~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 154 -----FPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred -----cChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 358999998887777766665544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-11 Score=122.41 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=122.1
Q ss_pred hhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhh
Q 047229 351 LAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNS 429 (599)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 429 (599)
..+....|.+.+++|.+..+.+.+.+...++..++.++.|+++||+|||+ .+..+.++..++.++....+ ...
T Consensus 12 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~ 85 (379)
T TIGR00881 12 KNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV------FLPIGLILCAIVNLFFGFSTSLWV 85 (379)
T ss_pred HhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee------hhHHHHHHHHHHHHHHHHhhhHHH
Confidence 33445567777778999999999999999999999999999999999886 55666666666665554443 445
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhh-HHHHHHhhhhhhcCCCCccccCcchH
Q 047229 430 LYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVR-VAGRLYDREALKQGKGGLNCIGARCY 508 (599)
Q Consensus 430 ~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (599)
+++..++.|++.+...+....++.|.+|+++|+...++.+....+|.. ++|. +.+.+.+. .+|
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---------------~~~ 149 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGG-LLPPLVLFGIAEL---------------YSW 149 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHH-HHHHHHHHHHHhc---------------CCc
Confidence 666777889999988899999999999999999999999999999976 7773 44444443 358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 509 RVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 509 ~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
+..|++.+++.++..++..++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 150 HWVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred hhHHHHHHHHHHHHHHHHheeeCC
Confidence 888888777666655555544433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=118.21 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=124.1
Q ss_pred HHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCI 417 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 417 (599)
..++..++............+.+.+++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~------~~~~~~~~~~~ 89 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL------PMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHH
Confidence 334444444444444445566777778999999999999999999999999999999999886 45556666665
Q ss_pred HHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcC
Q 047229 418 GYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG 496 (599)
Q Consensus 418 ~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~ 496 (599)
+.++.... +...+++..++.|++.+...+....++.|.+|+++++.+.|+...+..+|.. +++.+.+.+.+..+
T Consensus 90 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~---- 164 (405)
T TIGR00891 90 GTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV-VAAQVYSLVVPVWG---- 164 (405)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC----
Confidence 55554433 3445667778889999999999999999999999999999999999999975 88888888776521
Q ss_pred CCCccccCcchHHHHHHHHHHHHHH
Q 047229 497 KGGLNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 497 ~~~~~~~~~~~~~~~f~~~~~~~~i 521 (599)
.+|+..|++.++..++
T Consensus 165 ---------~~w~~~f~~~~~~~~~ 180 (405)
T TIGR00891 165 ---------DGWRALFFISILPIIF 180 (405)
T ss_pred ---------ccHHHHHHHHHHHHHH
Confidence 2488888775544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=117.55 Aligned_cols=160 Identities=7% Similarity=-0.001 Sum_probs=119.8
Q ss_pred hhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-hhhh
Q 047229 350 ALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-AVHN 428 (599)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 428 (599)
...+...+|.+.+++|.++.+.++..+.+.++..++.+..|+++||+|||+ ++..+......+...... .+..
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~------~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW------FLFGSLATFAAAAGRLLDPFNYE 80 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------HHHHHHHHHHHHHHHHHHhccHH
Confidence 334556678888889999999999999999999999999999999999774 333333333333222222 2445
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchH
Q 047229 429 SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCY 508 (599)
Q Consensus 429 ~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (599)
.+.+.-++.|++.+.. .......+|.+|+++|+++.++...+..+|.. +++.+.+.+.+. .+|
T Consensus 81 ~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~-l~~~~~~~l~~~---------------~gW 143 (368)
T TIGR00903 81 WLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGII-FALAAGLKIYTA---------------GGL 143 (368)
T ss_pred HHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc---------------cch
Confidence 6677788889998864 44445568999999999999999999999976 888888887765 469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 509 RVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 509 ~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
+..|++.+++.++..++..+..++
T Consensus 144 r~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 144 QLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999888777766665555444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=123.96 Aligned_cols=170 Identities=14% Similarity=0.198 Sum_probs=133.3
Q ss_pred HHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 047229 341 TATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL 420 (599)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 420 (599)
+..++...........+|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR------LFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH------HHHHHHHHHHHHHH
Confidence 334443333334445678888889999999999999999999999999999999999875 56666666666666
Q ss_pred HHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCC
Q 047229 421 LIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGG 499 (599)
Q Consensus 421 ~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~ 499 (599)
+....+ ...+++..++.|++.+...+....++.|.+|+++|+.+.++......+|.. ++|.+.+.+.+.
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~--------- 152 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPA-LGPTLGGWIIEN--------- 152 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhh-hhhccHhHhccC---------
Confidence 555443 445667778889999999999999999999999999999999998889876 899999988876
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 500 LNCIGARCYRVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 500 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
.+|++.|++...+.++..++..+..++
T Consensus 153 ------~~w~~~f~~~~~~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 153 ------YHWRWIFLINVPIGIIVVVVAFFILPR 179 (485)
T ss_pred ------cCceehhhhhhHHHHHHHHHHHHHcCC
Confidence 358889998877777666655555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-10 Score=119.04 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=113.2
Q ss_pred cchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-----hhhh
Q 047229 355 DNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-----VHNS 429 (599)
Q Consensus 355 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 429 (599)
...|++.++ |+++.+.+...+...++..++.++.|+++||+|+|+ ++..+.++.+++.+.+... +...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~------~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 122 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGLILAAAVMLFMGFVPWATSSIAV 122 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch------hHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 345655555 999999999999999999999999999999999885 5566666665555544432 2223
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHH
Q 047229 430 LYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYR 509 (599)
Q Consensus 430 ~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (599)
+++..++.|++.+..++.....+.+.+|+++++++.|+.+.+..+|+.+.+|.+...+... .+|+
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---------------~gw~ 187 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---------------NDWH 187 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---------------ccHH
Confidence 4555677788888887877788889999999999999998888888654555433222222 2589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 047229 510 VAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 510 ~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
..|++.+++.++..++..++.++
T Consensus 188 ~~f~i~~~~~~~~~~l~~~~~~~ 210 (452)
T PRK11273 188 AALYMPAFAAILVALFAFAMMRD 210 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 99998877766665555555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-11 Score=123.10 Aligned_cols=178 Identities=16% Similarity=0.118 Sum_probs=129.7
Q ss_pred HHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchH
Q 047229 327 LLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPL 406 (599)
Q Consensus 327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~ 406 (599)
++.+.++++++.+++..++...........+|.+.++.+.++.+.+...+...++..++.++.|+++||++||+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~----- 84 (417)
T PRK10489 10 LSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL----- 84 (417)
T ss_pred HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE-----
Confidence 344556888887777666665555555566777778888888999999999999999999999999999998862
Q ss_pred HHHHHHHHHHHHHHHHH-----Hh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhh
Q 047229 407 LLTLVILFSCIGYLLIA-----FA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFN 480 (599)
Q Consensus 407 ~~~~~~~~~~~~~~~~~-----~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~ 480 (599)
+..+..+.+++...+. .. +...+++..++.|++.+...+....++.|.+|+++++++.++......+|.. ++
T Consensus 85 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g 162 (417)
T PRK10489 85 -ILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV-IS 162 (417)
T ss_pred -EEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHH-hH
Confidence 2222222232222211 11 2234455666778888887788888999999999999999999888889875 89
Q ss_pred hhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 047229 481 VRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVS 526 (599)
Q Consensus 481 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 526 (599)
|.+++.+.+. .+|++.|++.++..+++.++.
T Consensus 163 ~~l~g~l~~~---------------~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 163 PALGGLLIAA---------------GGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHH---------------HhhHHHHHHHHHHHHHHHHHH
Confidence 9999998887 347888887766655554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-10 Score=117.25 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=116.6
Q ss_pred chhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 333 SIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
+|+++.+++..++............+.+.++++.++.+.++..+.+.+...+..++.|+++||++||+ ++..+.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~------vl~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR------VMFIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch------hhHHHH
Confidence 45677777777776654444455556667788888888899999999999999999999999999886 455555
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 413 LFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++..++.+.+..... .++..++.|++.+...|...+++.|.+|+++++++.|+......++.. +||.++|.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~-~Gp~lgG~l~~~ 150 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAIL-LGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 555544443332222 245567789999999999999999999999999999999988888865 999999999886
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-10 Score=116.29 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=130.9
Q ss_pred HHHHHHHHhhhcchhhhhcchHHHH-HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 047229 337 LILFTATTCSIGGALAAIDNMGQIG-KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFS 415 (599)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 415 (599)
+.++...++...........++.++ +++|.++.+.++..+...+...+.+++.|+++||+++|+ .+..+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~------~l~~~~~~~ 86 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP------MIVTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH------HHHHHHHHH
Confidence 4444555555555555666677666 457999999999999999999999999999999998875 566676676
Q ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhh
Q 047229 416 CIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALK 494 (599)
Q Consensus 416 ~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~ 494 (599)
.++.+.+...+ .+.+++..++.|++.+...+...+++.|.+|+++++++.|+......+|.. ++|.+.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-ig~~l~g~l~~~---- 161 (400)
T PRK11646 87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAV-IGALLGSWLLQY---- 161 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh----
Confidence 66666655443 344566677778888888888889999999999999999999999999976 899999988732
Q ss_pred cCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 495 QGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 495 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
+|+..|++.+++.++..++..+.
T Consensus 162 ------------g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 162 ------------DFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899998877766655544433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-09 Score=108.26 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=100.7
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhh-hhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAG-FASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCLG 442 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~g 442 (599)
.|+++.+.+.+.+..++.+.++.++.. .+.-.++.|+ .+..+.....+...++.+.+..+............+
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~------~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~ 345 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR------LISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG 345 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Confidence 489999999999999999999988887 5555666553 667788888888888887776666666666677777
Q ss_pred hHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhh
Q 047229 443 AQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALK 494 (599)
Q Consensus 443 ~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~ 494 (599)
...+..-++++...+++.+|++.++......+.+. ++|.+.+.++..+...
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~-~~~~~~~~i~~~t~~~ 396 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV-VSPALYGNIFALTLDD 396 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhh-hhHHHHHHHHHHHHHh
Confidence 77889999999999999999999999988888876 8888999888776543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-10 Score=117.20 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=113.8
Q ss_pred hhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhh
Q 047229 351 LAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNS 429 (599)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 429 (599)
.......+.+.+++|.+..+.+...+...++..++.++.|+++||+|+|+ .+..+.++.+++.++....+ ...
T Consensus 53 ~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~------~~~~~~~~~~~~~~~~~~~~s~~~ 126 (476)
T PLN00028 53 FAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY------GSAFLLMLTAPAVFCMSLVSSATG 126 (476)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34444566777889999999998888888999999999999999999875 45555555556555544433 334
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHH
Q 047229 430 LYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYR 509 (599)
Q Consensus 430 ~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (599)
+++..++.|++.+... ....+++|.+|+++||.+.|+.+....+|+. +++.+.+.+.+...... +.+..+|+
T Consensus 127 l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~-~~~~~~~~i~~~~~~~~------~~~~~gWr 198 (476)
T PLN00028 127 FIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGG-VTQLLMPLVFPLIKDAG------APSFTAWR 198 (476)
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC------CcchhhhH
Confidence 5555677788777643 3456789999999999999998877777764 55555555443211100 00013699
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047229 510 VAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 510 ~~f~~~~~~~~i~~i~~~~~ 529 (599)
..|++.+++.++..++..++
T Consensus 199 ~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 199 IAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888777666555444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-10 Score=119.41 Aligned_cols=173 Identities=16% Similarity=0.066 Sum_probs=134.1
Q ss_pred HHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCI 417 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 417 (599)
.+.+..++...-...+...+|.+.+++|.+..+.++..+.+.++..++.+..|+++||+|||+ .+..+..+..+
T Consensus 10 ~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~------~l~~~~~~~~~ 83 (495)
T PRK14995 10 IIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR------LLMLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHH
Confidence 334444444444444555688888899999999999999999999999999999999999886 66777777777
Q ss_pred HHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhh-CCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhc
Q 047229 418 GYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELF-GLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQ 495 (599)
Q Consensus 418 ~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~-~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~ 495 (599)
+.++....+ ...+++..++.|++.+...+.....+.+.+ |+++|+.+.|+......+|.. ++|.+++.+.+.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~-~gp~lgg~l~~~----- 157 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAA-FGPLVGGILLEH----- 157 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc-----
Confidence 766655543 445666778889999988887777776766 678999999999999999975 999999999887
Q ss_pred CCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 496 GKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 496 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
.+|++.|++...++++..++..+..++
T Consensus 158 ----------~gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 158 ----------FYWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred ----------CChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 469999999887777766665555433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=116.02 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=126.6
Q ss_pred HHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 047229 336 MLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFS 415 (599)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 415 (599)
+|...+.+++.......+...+|.+.+++|+|..+.+...+...++..++.++.|++.||+|||+ .+..+.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~------~~~~~~~~~ 82 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKR------QLIFGFALM 82 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHHHH
Confidence 44444555554444444556678888889999999999999999999999999999999999886 455565566
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhh
Q 047229 416 CIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALK 494 (599)
Q Consensus 416 ~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~ 494 (599)
+++.++.... +...+++..++.|++.+...+....++.|.+|+++|+...+..+....+++. ++|.+.+.+.+.
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~---- 157 (394)
T PRK03699 83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGM-IFPIIAAYLLAR---- 157 (394)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc----
Confidence 6655555443 3444566677889988888888888999999989999999888777777765 778777777654
Q ss_pred cCCCCccccCcchHHHHHHHHHHHHHHHHHH
Q 047229 495 QGKGGLNCIGARCYRVAFVTISAATFFACIV 525 (599)
Q Consensus 495 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 525 (599)
..+|+..|.+.+++.++..++
T Consensus 158 ----------~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 158 ----------SIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred ----------cccHHHHHHHHHHHHHHHHHH
Confidence 146999998877766554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-10 Score=114.70 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcch-----hhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHH
Q 047229 334 IDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSI-----ASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLL 408 (599)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~ 408 (599)
+++..+++..++...........+|.+.+++|.+..+. +...++..+...++.++.|+++||++||+ .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~ 87 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKI------ML 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHH------HH
Confidence 34555555555555555556667888888888886553 67778888999999999999999998875 45
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHH
Q 047229 409 TLVILFSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRL 487 (599)
Q Consensus 409 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~ 487 (599)
..+.++.+++..++... +...+++..++.|++.+ ..+....++.+.+|+++++.+.|+......+|.. ++|.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l 165 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGAL-LGPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 55555555555554433 33445566667777654 4566677888999999999999999988888865 889999988
Q ss_pred HhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 488 YDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
.+. .+|+..|++.+++.+++.+...++.++
T Consensus 166 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (408)
T PRK09874 166 ADS---------------YGLRPVFFITASVLFLCFLVTLFCIRE 195 (408)
T ss_pred HHH---------------hCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 876 348889998888777766665555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-10 Score=116.43 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=119.1
Q ss_pred hcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-hhhhhHHH
Q 047229 354 IDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-AVHNSLYF 432 (599)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 432 (599)
....|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+ .+..+..+..++.++... .+...+.+
T Consensus 35 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (406)
T PRK11551 35 GVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKR------ILIVSVALFGLFSLATAQAWDFPSLLV 108 (406)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34456777888999999999999999999999999999999999886 445555555554444333 33445667
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHH
Q 047229 433 ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAF 512 (599)
Q Consensus 433 ~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f 512 (599)
..++.|++.+...+....++.|.+|+++++++.++.+....+|.. +++.+.+.+.+. .+|+..|
T Consensus 109 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---------------~~~~~~~ 172 (406)
T PRK11551 109 ARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGA-LASVIGVLAAGD---------------AAWRHIF 172 (406)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccc---------------cCHHHHH
Confidence 778889999999999999999999999999999999988888876 777776666554 3588888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 047229 513 VTISAATFFACIVSIILVL 531 (599)
Q Consensus 513 ~~~~~~~~i~~i~~~~~~~ 531 (599)
++.+++.++..++.....+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~ 191 (406)
T PRK11551 173 YVGGVGPLLLVPLLMRWLP 191 (406)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 8877665555544443333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=118.77 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhh-hhhhccCCchHHHHHH
Q 047229 334 IDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEI-FLAKYKVPRPLLLTLV 411 (599)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr-~g~r~~~~~~~~~~~~ 411 (599)
+.+|.++...++.-..++.+..+++.|+++ +|.+..++++..+.+.....+..+++|+++|| +|||+ .+..+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~------~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR------TIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH------HHHHH
Confidence 345666666666666666677777777654 79999999888888888888888999999999 99886 67777
Q ss_pred HHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCC--cccchhhhhhccchhhhhHhhhhHHHHH
Q 047229 412 ILFSCIGYLLIAFAVH--NSLYFASIIIGFCLGAQLSLLVTIISELFGLK--HYSTLYNVGSVSSPIGSYIFNVRVAGRL 487 (599)
Q Consensus 412 ~~~~~~~~~~~~~~~~--~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~--~~g~~~g~~~~~~~ig~~i~~~~l~g~~ 487 (599)
.++..++.+++..... ..+++...+.+++.|...+...+++.|.+|++ +++.++++.+++.++|+. ++|.+.+.+
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~-~g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSL-ISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 7777777766554432 23446677789999999888899999999877 457789999999999976 899999999
Q ss_pred HhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHH
Q 047229 488 YDREALKQGKGGLNCIGARCYRVAFVTISAATFFAC 523 (599)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 523 (599)
.+. .+|++.|++..+..+++.
T Consensus 167 ~~~---------------~gw~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 167 ADK---------------FGYSVTYNLCGAGLIIAL 187 (489)
T ss_pred HHh---------------hChHHHHHHHHHHHHHHH
Confidence 887 359999988655433333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=115.53 Aligned_cols=158 Identities=14% Similarity=0.217 Sum_probs=126.4
Q ss_pred hhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhH
Q 047229 352 AAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSL 430 (599)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 430 (599)
.+...+|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+ .+..+..+.+++..++...+ ...+
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~------~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP------VILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH------HHHHHHHHHHHHHHHHHHHccHHHH
Confidence 3456678888889999999999999999999999999999999998775 55666666666655554433 4456
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHH
Q 047229 431 YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRV 510 (599)
Q Consensus 431 ~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (599)
++..++.|++.+...+....++.|.+|+++++++.++.+....+|.. ++|.+.+.+.+. .+|+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~---------------~~~~~ 146 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPL-LAPIIGGWLLVW---------------FSWHA 146 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------------cChHH
Confidence 66777889999988888899999999999999999999988888875 899988888876 35888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047229 511 AFVTISAATFFACIVSIILVL 531 (599)
Q Consensus 511 ~f~~~~~~~~i~~i~~~~~~~ 531 (599)
.|++.+++.++..+...+..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 147 IFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 998887777666655544433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.8e-10 Score=114.86 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=124.4
Q ss_pred hhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhh
Q 047229 350 ALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHN 428 (599)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 428 (599)
...+...+|.+.+++|.+..+.+...+++.++..++.++.|+++||+|||+ ++..+.++.+++.++.... +..
T Consensus 32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~------~l~~~~~~~~~~~~~~~~a~~~~ 105 (413)
T PRK15403 32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP------VLITGALIFTLACAATLFTTSMT 105 (413)
T ss_pred HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH------HHHHHHHHHHHHHHHHHHcCCHH
Confidence 344455677777888999999999999999999999999999999999886 5555666666665555444 344
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchH
Q 047229 429 SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCY 508 (599)
Q Consensus 429 ~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (599)
.+++..++.|++.+...+....+..|.+|+++++.+.++.+....++.. ++|.+++.+.+. .+|
T Consensus 106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~lg~~l~~~---------------~gw 169 (413)
T PRK15403 106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPI-IGPLSGAALMHF---------------VHW 169 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh---------------cCH
Confidence 5666778888888766666778889999999999999999988888875 889888887765 359
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 509 RVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 509 ~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
+..|++.+++.+++.+..++..++
T Consensus 170 ~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999888777766554443333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=115.91 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=110.6
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 414 (599)
.+....+..++..........+++++.+++|.++.+.++..+.+.++..++.++.|++.||+|||+ .+..+..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~------~l~~~~~~ 87 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLK------TMMIGLLL 87 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHH------HHHHHHHH
Confidence 344445554444444444556678888889999999999999999999999999999999999886 55555555
Q ss_pred HHHHHHHH---HH--hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHh
Q 047229 415 SCIGYLLI---AF--AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489 (599)
Q Consensus 415 ~~~~~~~~---~~--~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~ 489 (599)
..++.++. .. .+...+++..++.|++.+...+.....+.+.+|+++++++.|+.+....+|..+++|.+.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55554332 12 12333455566678887777777777888999999999999999988888853478888888776
Q ss_pred h
Q 047229 490 R 490 (599)
Q Consensus 490 ~ 490 (599)
.
T Consensus 168 ~ 168 (402)
T TIGR00897 168 A 168 (402)
T ss_pred c
Confidence 5
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-10 Score=114.75 Aligned_cols=159 Identities=11% Similarity=0.023 Sum_probs=120.7
Q ss_pred hhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhh
Q 047229 350 ALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHN 428 (599)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 428 (599)
...+...++.+.+++|.++.+.+...+...++..++.++.|+++||+|||+ .+..+..+..++.+..... +..
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~ 102 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP------VMLAGVAFFILTCLAILLAQSIE 102 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HHHHHHHHHHHHHHHHHHHccHH
Confidence 344455667777888999999999999999999999999999999998875 4555555555555444333 344
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchH
Q 047229 429 SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCY 508 (599)
Q Consensus 429 ~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (599)
.+++..++.|++.+...+.....+.|.+|+++++...++......++.. ++|.+.+.+.+. .+|
T Consensus 103 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~---------------~~w 166 (406)
T PRK15402 103 QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPL-LGPLVGAALIHV---------------LPW 166 (406)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc---------------cCc
Confidence 4566677778888888888888999999999988888887776677754 888888888776 358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047229 509 RVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 509 ~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
+..|++.+++.+++.+...+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRAM 188 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC
Confidence 8999888877776665544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=114.80 Aligned_cols=159 Identities=13% Similarity=0.170 Sum_probs=120.7
Q ss_pred chhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-h
Q 047229 349 GALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-H 427 (599)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 427 (599)
..+.+....|++.+++|.+..+.+...+...++..++.++.|+++||+|||+ .+..+..+.+++.++....+ .
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~------~~~~~~~~~~~~~~~~~~~~~~ 91 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRA------VAMLGGILYGLGFTFYAIADSL 91 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccc------hhHHhHHHHHHHHHHHHHHHHH
Confidence 3444555677788889999999999999999999999999999999999886 45556666666665555443 4
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcch
Q 047229 428 NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARC 507 (599)
Q Consensus 428 ~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 507 (599)
..+++...+.|++.+..++.......+.+| ++|+.+.++...+..+|.. +++++.+.+.+. .+
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---------------~~ 154 (377)
T TIGR00890 92 AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSF-ILSPLITSVINL---------------EG 154 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHh-HHHHHHHHHHhc---------------cc
Confidence 445566678899988887777778888886 6799999999998888876 444455555554 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047229 508 YRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 508 ~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
|+..|++.+++.++..+..+++.
T Consensus 155 ~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 155 VPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999988887777666555544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-09 Score=102.25 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=70.7
Q ss_pred HHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH
Q 047229 53 DIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYML 131 (599)
Q Consensus 53 ~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~ 131 (599)
.+-+++|.+..|++.+........ +++++.|.++||+|||+.-++-.++..++++.- ..++++.++++|+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k---------~~~~~~~L~~GRv 129 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK---------HSSNYPVLLLGRV 129 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---------hccccHHHHHHHH
Confidence 455689999999999666555555 569999999999999999888888887776532 2378999999999
Q ss_pred HHhccccccchhHHHHH
Q 047229 132 IGANSQSFPNTGALVTC 148 (599)
Q Consensus 132 l~G~g~g~~~~~~~~~~ 148 (599)
+.|++....+.+--...
T Consensus 130 lgGiaTSLLfS~FEsW~ 146 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWM 146 (354)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887776654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-10 Score=113.09 Aligned_cols=147 Identities=21% Similarity=0.231 Sum_probs=110.4
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHH-HHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQ-IGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVIL 413 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 413 (599)
.+|..++.+++.......+....|. +.+++|+|+.+.++..+...++..++.++.|+++||+|||+ .+..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY------TTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH------HHHHHHH
Confidence 4566667776666666666777775 55678999999999999999999999999999999999875 5566666
Q ss_pred HHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHh
Q 047229 414 FSCIGYLLIAFAV--HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489 (599)
Q Consensus 414 ~~~~~~~~~~~~~--~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~ 489 (599)
+..++.++....+ ...+++..++.|++.+. ++....++.|.+|+++|+.+.++......+|.. +++.+.+.+..
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~l~~ 151 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGG-VAQFVMPPIIG 151 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHH-HHHHHHHHHHH
Confidence 6666666554443 34455667777887554 556678899999999999999998876667754 56666655554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.6e-10 Score=116.24 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=114.4
Q ss_pred cchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH------hhhh
Q 047229 355 DNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF------AVHN 428 (599)
Q Consensus 355 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 428 (599)
...|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|+|+ ++..+.++.++..+.+.. .+..
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQ------FLPFLLILSAICMLGFGASLGSGSVSLG 123 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccc------hHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 4467777889999999999999999999999999999999999886 444444443333332221 2344
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchH
Q 047229 429 SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCY 508 (599)
Q Consensus 429 ~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (599)
.+++..++.|++.+..++....+++|.+|+++||.+.|+...+..+|.. +++.+...+.+... ..+|
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~-l~~~i~~~~~~~~~------------~~~~ 190 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA-GAGGVALWGANYFF------------DGHV 190 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh-HHHHHHHHHHHhhc------------cCcc
Confidence 5666677889999988899999999999999999999999999999976 67766655544310 0236
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047229 509 RVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 509 ~~~f~~~~~~~~i~~i~~~~~ 529 (599)
+..|.+.+++.++..++.+++
T Consensus 191 ~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 191 IGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 777777666655554444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=113.07 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=124.3
Q ss_pred HHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 047229 341 TATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYL 420 (599)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 420 (599)
....+.......+...+|.+.+++|.|+.+.+...+...++..++.++.|+++||+|||+ .+..+..+..++.+
T Consensus 15 ~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~------~~~~~~~~~~~~~~ 88 (394)
T PRK11652 15 LLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP------VILVGMSIFILGTL 88 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH------HHHHHHHHHHHHHH
Confidence 333333333344555678888889999999999999999999999999999999999875 45555555555555
Q ss_pred HHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCC
Q 047229 421 LIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGG 499 (599)
Q Consensus 421 ~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~ 499 (599)
..... +...+++..++.|++.+...+....+..|.++.++++.+.+..+.+..++.. ++|.+.+.+.+.
T Consensus 89 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~--------- 158 (394)
T PRK11652 89 VALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPL-LAPLIGGLLTTL--------- 158 (394)
T ss_pred HHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc---------
Confidence 54433 3445566677788888877777778888999888999999998888888865 889888888775
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 500 LNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 500 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
.+|+..|++.+++.++..+...+.
T Consensus 159 ------~g~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 159 ------FGWRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred ------cChHHHHHHHHHHHHHHHHHHHHh
Confidence 359999988776665544444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-09 Score=112.71 Aligned_cols=135 Identities=14% Similarity=0.064 Sum_probs=93.4
Q ss_pred HHHHHhhHHHHH-hHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 44 SYMFALYSNDIK-SSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 44 ~~~~~~~~~~l~-~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
.|.+..+.|.+. +++|.+..+..++.....++.++ .++.|++.||+|||+++.++.+...++.+.+.... ..+
T Consensus 266 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~~ 340 (490)
T PRK10642 266 YYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI-----NSN 340 (490)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-----hCC
Confidence 455555667654 67899988777766666676655 78999999999999998888765444332221111 114
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcC
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNG 183 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~ 183 (599)
+...+++++++.|++.+........++.+.+|+ .||+++|+......+++.+++.+.+.+.+
T Consensus 341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~ 403 (490)
T PRK10642 341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVE 403 (490)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888887776666666777889985 59999997544444666777777766554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-10 Score=111.17 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=133.2
Q ss_pred HHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 047229 339 LFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIG 418 (599)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 418 (599)
+.+..++............+.+.++.|.++.+.+...+...++..++.++.|+++||+|||+ .+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~------~~~~~~~~~~~~ 77 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR------VLLLGLLLFALG 77 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch------hhHHHHHHHHHH
Confidence 33444444444445556677888888999999999999999999999999999999999876 556666666666
Q ss_pred HHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCC
Q 047229 419 YLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGK 497 (599)
Q Consensus 419 ~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~ 497 (599)
.+..... +....++..++.|++.+...+....+..|.+|+++|++..++......+|.. ++|.+.+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~------- 149 (352)
T cd06174 78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGAL-LGPLLGGLLAES------- 149 (352)
T ss_pred HHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHH-------
Confidence 6555443 3455667778889999999999999999999999999999999999999976 899999998887
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 498 GGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 498 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
.+|+..+++.+++.+++.+...++
T Consensus 150 --------~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
T cd06174 150 --------LGWRWLFLILAILGLLLALLLLFL 173 (352)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888888877777666655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=110.73 Aligned_cols=152 Identities=9% Similarity=-0.036 Sum_probs=106.9
Q ss_pred HHhhHH-HHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHH
Q 047229 47 FALYSN-DIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVW 124 (599)
Q Consensus 47 ~~~~~~-~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (599)
+....| .+++++|.++.+.+++........+. .++.|++.||+|||+.+..+.+...+....... . ++.+
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~---~~~~ 306 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM-----A---HSPA 306 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----H---hhHH
Confidence 333445 45678999999999865554444444 789999999999999887776655444322211 1 4566
Q ss_pred HHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Q 047229 125 QMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVF 204 (599)
Q Consensus 125 ~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (599)
.+++.+++.+++.|...+.......+.+|++||++.++.+....+|..+++.+.+.+.+...+...++....+.+++++.
T Consensus 307 ~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK15011 307 ILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC 386 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 77788888888877776666777888999889999999988888999999988887766444444444444444444444
Q ss_pred hh
Q 047229 205 IP 206 (599)
Q Consensus 205 ~~ 206 (599)
..
T Consensus 387 ~~ 388 (393)
T PRK15011 387 LL 388 (393)
T ss_pred HH
Confidence 33
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.8e-10 Score=114.54 Aligned_cols=158 Identities=16% Similarity=0.080 Sum_probs=120.6
Q ss_pred HHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 047229 337 LILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSC 416 (599)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 416 (599)
...++..+.............+.+.++.|.++.+.+...+...++..++.++.|+++||+|||+ .+..+.++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~------~l~~~~~~~~ 94 (426)
T PRK12307 21 FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP------LMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HHHHHHHHHH
Confidence 3334444443333333444556666778999999999999999999999999999999998875 5666777766
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhc
Q 047229 417 IGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQ 495 (599)
Q Consensus 417 ~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~ 495 (599)
++.++....+ ...+++..++.|++.+..++....++.|.+|+++|+.+.|+...+..+|.. +++.+.+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-~~~~l~~~l~~~----- 168 (426)
T PRK12307 95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNI-IAAYFMPSFAEA----- 168 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHH-HHHHHHHHHccc-----
Confidence 6665554443 445667778889999999999999999999999999999999988888875 777777776655
Q ss_pred CCCCccccCcchHHHHHHHHH
Q 047229 496 GKGGLNCIGARCYRVAFVTIS 516 (599)
Q Consensus 496 ~~~~~~~~~~~~~~~~f~~~~ 516 (599)
.+|+..|++..
T Consensus 169 ----------~~w~~~f~i~~ 179 (426)
T PRK12307 169 ----------YGWRAAFFVGL 179 (426)
T ss_pred ----------CCHHHHHHHHH
Confidence 35898888643
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-10 Score=114.87 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=114.1
Q ss_pred HhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHH
Q 047229 329 QAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLL 407 (599)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~ 407 (599)
..+++|++|.+.+..++.......+..+++.++++ .|+++.+.+...+...++..+++++.|+++||+|+|+ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~------~ 78 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKK------H 78 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH------H
Confidence 35677889998888888777666677788888877 7999999999999999999999999999999999875 3
Q ss_pred HHHHHHHHHHHHHH--H-HHhhhh--hHHHHH----HHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhH
Q 047229 408 LTLVILFSCIGYLL--I-AFAVHN--SLYFAS----IIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYI 478 (599)
Q Consensus 408 ~~~~~~~~~~~~~~--~-~~~~~~--~~~i~~----~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i 478 (599)
+..+..+.++.... . ...... ...... ++.+.+.....+....+..+ . .++++..+|.......+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~- 155 (420)
T PRK09528 79 LLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWA- 155 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHH-
Confidence 33322222222111 1 111100 111111 22222222323333333322 3 24667788888888888875
Q ss_pred hhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 479 FNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 479 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
++|.+.|.+.+. +++..|++.+++++++.++.++.
T Consensus 156 i~~~~~g~l~~~----------------~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 156 LCAFIAGILFNI----------------NPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHHHHHHHHHhc----------------CchHhHHHHHHHHHHHHHHHhcc
Confidence 889999988764 37788888777766655554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=111.28 Aligned_cols=188 Identities=12% Similarity=0.058 Sum_probs=123.6
Q ss_pred chhHHHHHHHHHhhhcchhhhhcchHHHHH-HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHH
Q 047229 333 SIDMLILFTATTCSIGGALAAIDNMGQIGK-ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLV 411 (599)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~ 411 (599)
+|.++...+.++........+....+.+-+ ++|+++.+.+++.++..+...++++..|++.||+|.|+ ++..+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~------v~~~~ 106 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR------WTVFS 106 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HHHHH
Confidence 346666666665555444444444444444 58999999999999999999999999999999999775 45555
Q ss_pred HHHHHHHHHHHHH------hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhh---Hhhhh
Q 047229 412 ILFSCIGYLLIAF------AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSY---IFNVR 482 (599)
Q Consensus 412 ~~~~~~~~~~~~~------~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~---i~~~~ 482 (599)
.++..+..++... .+...+++..++.|++ +..++.....+++.+|++++|++.|+....+++|.. .+.|.
T Consensus 107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555443 2344567778888987 778888889999999999999999998655555543 13333
Q ss_pred HHH-HHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 483 VAG-RLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 483 l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
+.+ .+.+..+..... ...-+..+++.++++...+.++..++.+++
T Consensus 186 ~i~~~l~~~~G~~~~~--~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 186 VIFVPVFAFLGVNGVP--QADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHhcccccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 122322110000 000012457888888877777766666655
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-11 Score=116.87 Aligned_cols=177 Identities=11% Similarity=0.170 Sum_probs=138.8
Q ss_pred HHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCI 417 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 417 (599)
++++...+...--+.+-..++..-+..+.++...+++...+.+...+..++.|++.||+.|++ ++.++..+..+
T Consensus 37 il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~------v~~vG~~iW~~ 110 (493)
T KOG1330|consen 37 ILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR------VIAVGIFIWTL 110 (493)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce------EEeeHHHHHHH
Confidence 344444444444444444444444456899999999999999999999999999999996664 77788878777
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcC
Q 047229 418 GYLLIAFAVH-NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG 496 (599)
Q Consensus 418 ~~~~~~~~~~-~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~ 496 (599)
+.+...+.+. +.+.+.-.+.|+|.....++.+.+++|.|+.+.|+..+++.++...+|+. +|-.+++.+.+.
T Consensus 111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsg-lG~vvgs~va~~------ 183 (493)
T KOG1330|consen 111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSG-LGYVVGSVVASL------ 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccc-eeEEeeeeeccC------
Confidence 7776665554 44667788999999999999999999999999999999999999999976 665555555555
Q ss_pred CCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 497 KGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 497 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
+..|+++|.+.+++.++..++..++.++.+|
T Consensus 184 --------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 184 --------TFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred --------ccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 3459999999999999999988888776654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-09 Score=110.90 Aligned_cols=151 Identities=15% Similarity=0.059 Sum_probs=109.8
Q ss_pred chhHHHHHHHHHhhhcchhhhhcchHHHH-HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHH
Q 047229 333 SIDMLILFTATTCSIGGALAAIDNMGQIG-KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLV 411 (599)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~ 411 (599)
++.++.+.+..++...........+|.+. +++|.|+.+.+...+...+...+++++.|+++||+|||+ .+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~------~l~~~ 87 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKR------SALQG 87 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchH------HHHHH
Confidence 34455555555554444444555666654 568999999999999999999999999999999999886 44444
Q ss_pred HHHHHHHHHH---HHH------hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhh
Q 047229 412 ILFSCIGYLL---IAF------AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVR 482 (599)
Q Consensus 412 ~~~~~~~~~~---~~~------~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~ 482 (599)
.+...++.+. ... .+...+++..++.|++.+...+...+++.|.+|+++|+++.|+...+...+.. ++|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~-~g~~ 166 (392)
T PRK12382 88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALA-AGAP 166 (392)
T ss_pred HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHH-HHHH
Confidence 4333332221 111 12234566677889988888888888899999999999999998887777765 8898
Q ss_pred HHHHHHhh
Q 047229 483 VAGRLYDR 490 (599)
Q Consensus 483 l~g~~~~~ 490 (599)
+.+.+.+.
T Consensus 167 ~~~~l~~~ 174 (392)
T PRK12382 167 LGLLLHSH 174 (392)
T ss_pred HHHHHHhc
Confidence 88888776
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=115.56 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=123.7
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 414 (599)
.+..+++..++...........++.+.+++|.++.+.+...+...++..++.++.|+++||+|||+ .+..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~ 94 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRL------AMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHH
Confidence 344445555554444444555567777788999999999999999999999999999999999875 55566666
Q ss_pred HHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhh
Q 047229 415 SCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREAL 493 (599)
Q Consensus 415 ~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~ 493 (599)
..++.++.... +...+++..++.|++.+...+....++.|.+|+++++.+.++......+|.. ++|.+.+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~--- 170 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV-VAAQVYSLVVPV--- 170 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc---
Confidence 66665554443 3445667778889999998999999999999999999999999998889975 888888888775
Q ss_pred hcCCCCccccCcchHHHHHHHHH
Q 047229 494 KQGKGGLNCIGARCYRVAFVTIS 516 (599)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~f~~~~ 516 (599)
.+|+..|++..
T Consensus 171 ------------~~w~~~f~~~~ 181 (496)
T PRK03893 171 ------------WGWRALFFIGI 181 (496)
T ss_pred ------------CCHHHHHHHHH
Confidence 45888887643
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.3e-10 Score=117.70 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=105.4
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hh---hhHHHHHHHHHHHh
Q 047229 366 YPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VH---NSLYFASIIIGFCL 441 (599)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~i~~~l~g~~~ 441 (599)
.+..+.++..+...++..++.++.|+++||+|||+ .+..+.++..++.++.... +. ..+++..++.|++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 141 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKK------SLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGV 141 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHH------HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh
Confidence 33788999999999999999999999999999886 5556666666655554322 21 24667788889999
Q ss_pred hhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHH---HHHHhhhhhhcCCCCccccCcchHHHHHHHHHHH
Q 047229 442 GAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVA---GRLYDREALKQGKGGLNCIGARCYRVAFVTISAA 518 (599)
Q Consensus 442 g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~---g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 518 (599)
+...+....++.|.+|+++|+.+.++.+....+|.. +++.+. +...+. .+|+..|++.+..
T Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~---------------~~w~~~f~~~~~~ 205 (481)
T TIGR00879 142 GIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL-VAYGFGSGKVSLNNT---------------LGWRIPLGLQLIP 205 (481)
T ss_pred hHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHhhcCCCC---------------ccHHHHHHHHHHH
Confidence 999999999999999999999999999988888875 777665 222122 4699999986655
Q ss_pred HHHHHHHH
Q 047229 519 TFFACIVS 526 (599)
Q Consensus 519 ~~i~~i~~ 526 (599)
.++..+..
T Consensus 206 ~~~~~~~~ 213 (481)
T TIGR00879 206 AGLLFLGL 213 (481)
T ss_pred HHHHHHHH
Confidence 55444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=111.76 Aligned_cols=155 Identities=12% Similarity=0.151 Sum_probs=117.9
Q ss_pred hhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHH
Q 047229 353 AIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLY 431 (599)
Q Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 431 (599)
+...++.+.++.|.++.+.+...+...++..++.++.|+++||++||+ .+..+..+..++.++.... +...+.
T Consensus 25 ~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 25 YLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP------VLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH------HHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 444456667778999999999999999999999999999999999875 4555555555555444433 334455
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVA 511 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (599)
+..++.|++.+...+....++.|.+++++++...+..+....++.. ++|.+.+.+.+. .+|+..
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~---------------~g~~~~ 162 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPA-LAPLLGAWLLNH---------------FGWQAI 162 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc---------------CChHHH
Confidence 6667778888777777778899999988888888888777778865 889889988876 359999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047229 512 FVTISAATFFACIVSIIL 529 (599)
Q Consensus 512 f~~~~~~~~i~~i~~~~~ 529 (599)
|++.+++.++..+...++
T Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 163 FATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 988877776665554433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-09 Score=109.02 Aligned_cols=147 Identities=11% Similarity=0.100 Sum_probs=119.1
Q ss_pred hhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHH
Q 047229 353 AIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLY 431 (599)
Q Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 431 (599)
....+|.+.+++|.|..+.++..+...++..++.++.|++.||+|||+ ++..+..+.+++.++....+ ...++
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~------~l~~~~~l~~~~~~~~~~a~~~~~ll 101 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERR------SVAISLLLIAVGALMRELYPQSALLL 101 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchH------HHHHHHHHHHHHHHHHHHCcchHHHH
Confidence 345577788889999999999999999999999999999999999886 77888888888888776654 45566
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVA 511 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (599)
+..++.|++.+...+..+.++.+.+| ++++.+.|+...+...|.. +++.+.+.+.+.. .+|+..
T Consensus 102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~g~~~~~~l~~~~--------------~~w~~~ 165 (393)
T PRK09705 102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGG-LGAAITPWLVQHS--------------ETWYQT 165 (393)
T ss_pred HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhc--------------CCHHHH
Confidence 77888899999988888899999987 7899999999888778765 7888888777652 258877
Q ss_pred HHHHHHHHHH
Q 047229 512 FVTISAATFF 521 (599)
Q Consensus 512 f~~~~~~~~i 521 (599)
+.+.++..++
T Consensus 166 ~~~~~~~~~~ 175 (393)
T PRK09705 166 LAWWALPAVV 175 (393)
T ss_pred HHHHHHHHHH
Confidence 7665554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-08 Score=99.08 Aligned_cols=345 Identities=8% Similarity=0.024 Sum_probs=187.7
Q ss_pred HhhHHHHHhH-hCCCHHHHHH-HHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHH
Q 047229 48 ALYSNDIKSS-LGYDQTTLNL-VSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVW 124 (599)
Q Consensus 48 ~~~~~~l~~~-~~~s~~~~~~-~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (599)
+.+.|.+.+. .|+|..|+.. +.-...=..+ +.++...+.|..+.|++++++.+...+...++-.. ++..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--------~sv~ 95 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--------TSVL 95 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--------CcHH
Confidence 4455666665 8999999987 4433333333 46799999999999999999998877776655333 6788
Q ss_pred HHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHH
Q 047229 125 QMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTK--ALILLLACLPTIVP 201 (599)
Q Consensus 125 ~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~--~~~~~~~~~~~~~~ 201 (599)
.+.+.-+..|++.+.. .+-.+++-...| ++-.++.+...++.-+|-.+++.++..+..-... .....+......++
T Consensus 96 ~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a 174 (412)
T PF01770_consen 96 AMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLA 174 (412)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999988864 344455544445 4566788887777767777777776665542211 11222222222223
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
++..++++.++++ ..|. +..+.+
T Consensus 175 ~~~~~fLP~~~~S------~~f~--------------------------------------------------r~~~~~- 197 (412)
T PF01770_consen 175 LLIALFLPMPKRS------LFFH--------------------------------------------------RKPPAE- 197 (412)
T ss_pred HHHHHHcCCCCcc------ccee--------------------------------------------------ccCccc-
Confidence 3222233221110 0000 000000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCC-------CChhHHHhhcchhHHHHHHHHHhhhcchhhhh
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERG-------DDYALLQAIFSIDMLILFTATTCSIGGALAAI 354 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (599)
+... +++.++.++..+......+.....+.. ....+++..++|..+...+...+...+...+.
T Consensus 198 -----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~ 267 (412)
T PF01770_consen 198 -----QDAN-----ESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVI 267 (412)
T ss_pred -----cccc-----cccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHH
Confidence 0000 000000000000000000000001111 11234556677776555555544444445555
Q ss_pred cchHHHHHHc---CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhH
Q 047229 355 DNMGQIGKAL---GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSL 430 (599)
Q Consensus 355 ~~~~~~~~~~---g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 430 (599)
++.....++. +....--|..-+...+.+.++.+..|++-.++.+. ....+....++.+..++++...+ .+..
T Consensus 268 nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~----~~l~l~~~S~l~a~~L~lm~~t~~Iwv~ 343 (412)
T PF01770_consen 268 NYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW----GELALGVFSLLQAGLLFLMSFTGNIWVC 343 (412)
T ss_pred HHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6655555555 23334445566677777888888888874444322 12233344444444444444443 4456
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccc
Q 047229 431 YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSS 472 (599)
Q Consensus 431 ~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~ 472 (599)
++..++++..+-...++...-++.....+..|...|+..+..
T Consensus 344 Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~A 385 (412)
T PF01770_consen 344 YAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVA 385 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHH
Confidence 777777777777777777777777777788888888776543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-09 Score=110.24 Aligned_cols=164 Identities=13% Similarity=0.026 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhhhcchhhhhcchHHHH-HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 334 IDMLILFTATTCSIGGALAAIDNMGQIG-KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
+++..+.+..+............++.+. +++|.|+.+.+...+...++..+++++.|+++||+|||+ ++..+.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~------~l~~~~ 88 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKK------AVVFGL 88 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcc------hHHHHH
Confidence 4455555555555444444555677655 557999999999999999999999999999999999886 455555
Q ss_pred HHHHHHHHHHHH---h------hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhH
Q 047229 413 LFSCIGYLLIAF---A------VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRV 483 (599)
Q Consensus 413 ~~~~~~~~~~~~---~------~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l 483 (599)
++.+++...... . +...+++..++.|++.+...+....+..|.+|+++|+++.++......+|.. ++|.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~l 167 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALA-IGAPL 167 (399)
T ss_pred HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHH-HHHHH
Confidence 444443322211 1 1223556667889999988888888899999999999999998887777754 88888
Q ss_pred HHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 484 AGRLYDREALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 484 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
++.+.+. .+|+..+.+..++.
T Consensus 168 ~~~l~~~---------------~g~~~~~~~~~~~~ 188 (399)
T PRK05122 168 GVLLYHW---------------GGLAGLGLLIMLLA 188 (399)
T ss_pred HHHHHHc---------------ccHHHHHHHHHHHH
Confidence 8888776 34777766655443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=108.94 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHH
Q 047229 333 SIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLV 411 (599)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~ 411 (599)
||++|.+....++.......+..+++.++++ +|+++.+.+...+...+...+++++.|+++||+|||+ .+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~------~~~~~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK------HLLWI 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 5788888877777777666677778887765 6999999999999999999999999999999999886 22222
Q ss_pred HHHHHHHHH---HHHHhh------hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhh
Q 047229 412 ILFSCIGYL---LIAFAV------HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVR 482 (599)
Q Consensus 412 ~~~~~~~~~---~~~~~~------~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~ 482 (599)
....+++.. .+...+ .....+..++.|++.+...+....+..+.. ++++..+|.......+|.. ++|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~-~g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWA-LCAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHH-HHHH
Confidence 222222111 111111 111233345566777766677666666643 3345667777777788865 8898
Q ss_pred HHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 047229 483 VAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSI 527 (599)
Q Consensus 483 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 527 (599)
++|.+.+. +|+..|++.+++.++..++.+
T Consensus 152 ~~g~l~~~----------------~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 152 IAGILFSI----------------DPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHhhhhcc----------------CchHHHHHHHHHHHHHHHHHH
Confidence 88877654 488889888777766655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-09 Score=109.40 Aligned_cols=154 Identities=14% Similarity=0.229 Sum_probs=116.4
Q ss_pred hhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHH
Q 047229 353 AIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLY 431 (599)
Q Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 431 (599)
+..+++.+.+++|.+..+.++..+...+...++.++.|+++||++||+ .+..+.++..++.++....+ ...++
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~l~ 111 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRP------VVIAGGLLASLGMILASFSSNVIELY 111 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchH------HHHhhHHHHHHHHHHHHHhhhHHHHH
Confidence 344567777888999999999999998888999999999999999875 45555555555555554433 23333
Q ss_pred HH-HHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHH
Q 047229 432 FA-SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRV 510 (599)
Q Consensus 432 i~-~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (599)
+. .++.|++.+...+....++.+.++ ++|+.+.|+.+.+..+|.. ++|.+.+.+.+. .+|+.
T Consensus 112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~-~~~~l~~~l~~~---------------~gwr~ 174 (455)
T TIGR00892 112 LTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLS-TLAPLNQYLFES---------------FGWRG 174 (455)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHH-HHHHHHHHHHHH---------------hChHH
Confidence 33 356688888766666677888886 7899999999999999976 888889988887 35999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047229 511 AFVTISAATFFACIVSIIL 529 (599)
Q Consensus 511 ~f~~~~~~~~i~~i~~~~~ 529 (599)
+|++.+++.+++.+..+++
T Consensus 175 ~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 175 SFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999988777665544433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=104.76 Aligned_cols=124 Identities=12% Similarity=0.036 Sum_probs=95.5
Q ss_pred HHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH
Q 047229 53 DIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYML 131 (599)
Q Consensus 53 ~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~ 131 (599)
.+.+++|.++.+.+++......... ..++.|++.||+|+|+++.++.+...+........ ++.+.+++.++
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 296 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--------NSLWALLMLQL 296 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3567899999999986544444443 47899999999999999888776554443322111 55677777889
Q ss_pred HHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCC
Q 047229 132 IGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD 184 (599)
Q Consensus 132 l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~ 184 (599)
+.|++.+...+....+..+.+|++++++.++......+|..+++.+.+.+.+.
T Consensus 297 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~ 349 (375)
T TIGR00899 297 LNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAER 349 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888888778888899998888999999888889999998888877654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.1e-09 Score=111.72 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=107.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh----------h---hhhHH
Q 047229 365 GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA----------V---HNSLY 431 (599)
Q Consensus 365 g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~ 431 (599)
+.++.+.++..+...++..++.++.|+++||+|||+ .+..+..+.+++.+..... + ...++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~------~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD------SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence 677788899999999999999999999999999886 5556555555555443321 1 12345
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVA 511 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (599)
+.-++.|++.|...+..+++++|.+|+++||.+.|+...+..+|.. +++.+.+.+....... .....+|++.
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~-------~~~~~gWr~~ 196 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL-VVYFVNYFIARSGDAS-------WLNTDGWRYM 196 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhccCccc-------ccccCChHHH
Confidence 6678889999999999999999999999999999999888888865 5554444333211000 0012469999
Q ss_pred HHHHHHHHHHHHHHH
Q 047229 512 FVTISAATFFACIVS 526 (599)
Q Consensus 512 f~~~~~~~~i~~i~~ 526 (599)
|++.++..++..+..
T Consensus 197 f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 197 FASEAIPALLFLMLL 211 (479)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998877766655443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-09 Score=109.41 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=121.8
Q ss_pred hcchhHHHHHHHHHhhhcch----hhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchH
Q 047229 331 IFSIDMLILFTATTCSIGGA----LAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPL 406 (599)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~ 406 (599)
+++++++..+..+.+..... ......++++.+++|-+ ....++.+...+++.++.++.|.++|.+|||.
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~------ 109 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY------ 109 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH------
Confidence 35566655544333322222 11223456777888866 44556667788899999999999999998884
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHH
Q 047229 407 LLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAG 485 (599)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g 485 (599)
....+.++.+++.++....+ ...+..+..+.|++.|... .....++|..|.+.|+...++......+.. ..+|.+..
T Consensus 110 ~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~-~~~~~ia~ 187 (599)
T PF06609_consen 110 FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITT-WISPLIAQ 187 (599)
T ss_pred HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhh-cccHHHHH
Confidence 78888889999988877654 4456778888899987765 445668999999999877665544332322 23444433
Q ss_pred HHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 486 RLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+... .+||+.|++..+...+++++..+++...+
T Consensus 188 ~~~~~---------------~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 188 LFAAH---------------SGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred HhccC---------------CCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 33222 46999999999888888877766654433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-09 Score=107.11 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=119.6
Q ss_pred chhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 333 SIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
+++++.+.+..++...........+|.+.++.|.|..+.+...+...++..++.++.|+++||+|||+ .+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~------~~~~~~ 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR------SYYLAS 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHH
Confidence 34567777777666665566667789999999999999999999999999999999999999999886 555566
Q ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 413 LFSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 413 ~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++..++....... +...+.+..++.|++.+...+.......+..++++++.+.|.......+|.. ++|.+.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~ 156 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTV-LGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccc
Confidence 6666665554443 3445666777889999888887777778888889999999999988888875 888888877654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=93.76 Aligned_cols=113 Identities=20% Similarity=0.206 Sum_probs=91.3
Q ss_pred HhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhc
Q 047229 73 DLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKN 151 (599)
Q Consensus 73 ~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~ 151 (599)
.++.+ .+++.|++.||+|||+.+..+..+..++.+..... ++++.+++.+++.|++.+...+.....+.|.
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--------SNITVLIIARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444 48899999999999999999988888776655332 5688888999999999999888888999999
Q ss_pred CC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHH
Q 047229 152 FP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLL 193 (599)
Q Consensus 152 fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~ 193 (599)
+| ++|++..++......+|..+++.+.+.+.+...+++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence 98 5699999999999999999999888887765444443333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=105.78 Aligned_cols=129 Identities=18% Similarity=0.060 Sum_probs=105.7
Q ss_pred hcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh----hhhh
Q 047229 354 IDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA----VHNS 429 (599)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 429 (599)
...+|.+.++.|.++.+.++..+...++..++.+..|++.||+|+|+ .+..+.++.+++.+++... +...
T Consensus 23 ~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~------~~~~g~~l~~~g~~l~~~~~~~~~~~~ 96 (410)
T TIGR00885 23 NPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA------GILLGLFLYALGAFLFWPAAEIMNYTL 96 (410)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH------HHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 35567776778999999999999999999999999999999999886 6677777777776664322 2334
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHh
Q 047229 430 LYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489 (599)
Q Consensus 430 ~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~ 489 (599)
+.+..++.|++.|...+....++.+..|++++++..++.+....+|.. ++|.+.+.+..
T Consensus 97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-~g~~i~~~l~~ 155 (410)
T TIGR00885 97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSI-IGMVVAQQLIL 155 (410)
T ss_pred HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 566778889999999999899999999989999999999888889876 88888887753
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=107.78 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=112.0
Q ss_pred hhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh------
Q 047229 352 AAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA------ 425 (599)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~------ 425 (599)
.+....+.+.+++|++..+.+.+.++.. ...+..++.|++.||+|+|+ ++.++.++..++.++....
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~------vllig~ll~~iG~ll~ala~~~~i~ 117 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRP------IFVLSMTVFCLGTLLFALTFQEVIE 117 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444456666778999988888776633 33456677899999998875 7778888888887776653
Q ss_pred -hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccC
Q 047229 426 -VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIG 504 (599)
Q Consensus 426 -~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~ 504 (599)
+.+.+++..++.|++.+...+.....+.+.|| ++||.+.|+......+|+.++++...+.+.+.
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~-------------- 182 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDN-------------- 182 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 33445667778888888888888888899996 88999999999999999876666655554332
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 505 ARCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 505 ~~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
++..|++.+++.++..++...+.
T Consensus 183 ---~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 183 ---TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhe
Confidence 66677777776666555555543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-09 Score=107.58 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=109.3
Q ss_pred hhHHHHHhHhCCCH--------HHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047229 49 LYSNDIKSSLGYDQ--------TTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGA 119 (599)
Q Consensus 49 ~~~~~l~~~~~~s~--------~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~ 119 (599)
.+.+...++.+.++ ++.+...+...+..+ ..++.|++.||+|+|+++.++.++..++..+.... .. .
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~--~~--~ 304 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG--DP--E 304 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--Cc--c
Confidence 44455555666443 455665444444444 47899999999999999999999887775544321 10 0
Q ss_pred ChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHH-HhhhhhHHHHHHHHHHhcCCC------hHHH-H
Q 047229 120 KPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLK-GLIGLSGAIMTQIYHAVNGDN------TKAL-I 190 (599)
Q Consensus 120 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~-~~~~lg~~i~~~i~~~~~~~~------~~~~-~ 190 (599)
..+++.+++.+++.|++.+...+....++.+++| ++||++.|+.+ ...++|..+++++.+.+.+.. .++. +
T Consensus 305 ~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f 384 (418)
T TIGR00889 305 YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMW 384 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHH
Confidence 1235667788999999999888888889999998 56999999997 567899999999988776531 2333 3
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q 047229 191 LLLACLPTIVPIVFIPTIRII 211 (599)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~ 211 (599)
+..++..++..++..+++++.
T Consensus 385 ~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 385 LFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHHHHHhCCc
Confidence 444444455555555555544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=90.87 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 047229 375 ISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIIS 453 (599)
Q Consensus 375 ~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~ 453 (599)
.+...++..++.++.|++.||++||+ .+..+..+..++.+..... +.....+..++.|++.+...+....++.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKP------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34567788899999999999998775 4455555555554444333 3344566678889999998899999999
Q ss_pred HhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 454 ELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 454 e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
|.+|++++++..++.+....++.. ++|.+.+.+.+. .+|+..|++...+.+++.+...++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPL-LGPPLGGVLAQF---------------LGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHH-HhHHhHHHHhcc---------------cchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999976 889999988766 358888888777766666655443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=102.19 Aligned_cols=176 Identities=14% Similarity=0.176 Sum_probs=135.7
Q ss_pred HHHHHHHHHhhhcchhhhhcchHHHHH-Hc----CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhh-hhhccCCchHHHH
Q 047229 336 MLILFTATTCSIGGALAAIDNMGQIGK-AL----GYPTHSIASFISLISIWNFLGRIVAGFASEIF-LAKYKVPRPLLLT 409 (599)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~-g~r~~~~~~~~~~ 409 (599)
++.+...-+.=-++++++-..+..|+. +. |+|++++..+++.++..--+..+++||++||+ |+|+ .+.
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~------tI~ 96 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR------TIV 96 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH------HHH
Confidence 444444444444445555444444443 23 49999998888888888888899999999998 5554 778
Q ss_pred HHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCC--cccchhhhhhccchhhhhHhhhhHH
Q 047229 410 LVILFSCIGYLLIAFAV---HNSLYFASIIIGFCLGAQLSLLVTIISELFGLK--HYSTLYNVGSVSSPIGSYIFNVRVA 484 (599)
Q Consensus 410 ~~~~~~~~~~~~~~~~~---~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~--~~g~~~g~~~~~~~ig~~i~~~~l~ 484 (599)
.+.+++.++.+.+...+ +..+++.+.++++|.|..=+...++..|.+|++ +|-...++.+++.++|+. ++|.+.
T Consensus 97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl-~~p~i~ 175 (498)
T COG3104 97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL-IAPIIT 175 (498)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH-HHHHHH
Confidence 89999999998887663 557889999999999999999999999999865 456677788899999986 999999
Q ss_pred HHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047229 485 GRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRT 533 (599)
Q Consensus 485 g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 533 (599)
+.+.++ .+|+..|...++-..++++..++.+++.
T Consensus 176 ~~~~~~---------------~g~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 176 GLLAIN---------------YGWHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHh---------------hCHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 999988 4599999998888777777666555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=113.49 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=115.1
Q ss_pred HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHH
Q 047229 363 ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA---VHNSLYFASIIIGF 439 (599)
Q Consensus 363 ~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~l~g~ 439 (599)
+.+++..+.+.+.+.+.++..++.++.|+++||+|+|+ .+..+.++..++.++.... +...+++..++.|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW------SIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch------hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 45788888899999999999999999999999999885 4455555544444443221 23345667788899
Q ss_pred HhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 440 CLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 440 ~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
+.+..++....+++|.+|+++|+++.|+...+..+|.. ++|.+.+.+.+.. .+|+..|++.+++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~l~~~l~~~~--------------~gw~~~f~i~~~~~ 208 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTF-IFLPISGWLCESW--------------GGWPMIFYVFGIVG 208 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc--------------CCCCeehhhhhHHH
Confidence 99999999999999999999999999999999999976 8888888887651 25888999888776
Q ss_pred HHHHHHHHHHHh
Q 047229 520 FFACIVSIILVL 531 (599)
Q Consensus 520 ~i~~i~~~~~~~ 531 (599)
++..++.+.+.+
T Consensus 209 ~~~~~~~~~~~~ 220 (465)
T TIGR00894 209 CAWSLLWFVFPA 220 (465)
T ss_pred HHHHHHHHHHhc
Confidence 665555544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=100.85 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=109.2
Q ss_pred HhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHH
Q 047229 48 ALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQM 126 (599)
Q Consensus 48 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l 126 (599)
..+.|.+.+++|.+..+.+.+.....+..+. .++.+++.||+|+|+.+.++.+...+..+..... ++.+++
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~ 296 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--------EAFPLI 296 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--------hhHHHH
Confidence 3345555577999999999966566666655 7799999999999999999999998887655333 778888
Q ss_pred HHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHH-HhhhhhHHHHHHHHHHhcCCChHHHHHHHHH
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLK-GLIGLSGAIMTQIYHAVNGDNTKALILLLAC 195 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~-~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~ 195 (599)
++..+++|+..+...+....++.+. | ++|++..++++ ...++|..+++.+++.+.+......++..+.
T Consensus 297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~ 366 (382)
T TIGR00902 297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAI 366 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999987 6 46899999975 5678889999988888776543333333333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=99.68 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=126.0
Q ss_pred chHHHHHHcCCCCcc-hhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHH
Q 047229 356 NMGQIGKALGYPTHS-IASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFA 433 (599)
Q Consensus 356 ~~~~~~~~~g~~~~~-~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 433 (599)
..|++.+++|+++.+ .+.+.+.+..+..+..+.+|+++||+|.|+ ++..+.+...+..++..+. +...+.+.
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~------vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP------VLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666678999999 999999999999999999999999999775 5566666666655555554 45567788
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHH
Q 047229 434 SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFV 513 (599)
Q Consensus 434 ~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 513 (599)
-+++|++.|..+ ....++...+|+++|+++.|+.+.+..+|.. +++++.+.+ ... |..+|....+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~-Ia~~L~qll-~s~------------gWr~y~~Ln~ 186 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVF-LSSVLGQLL-VTL------------GWISYSTLNI 186 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-Hhc------------CchhHHHHHH
Confidence 899999999999 8999999999999999999999999999986 777777773 332 1345777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 047229 514 TISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 514 ~~~~~~~i~~i~~~~~~~~~~ 534 (599)
+..+...++.++.+++....|
T Consensus 187 Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCch
Confidence 777777777888877765444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=102.02 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=112.4
Q ss_pred hhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 047229 352 AAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLY 431 (599)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (599)
.+...+|.+.+++|.+..+.++..+...++..++.++.|+++||+|+|+ .+..+.++.+++.+.....+...++
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEER------SVAAGLLLIAAGILIRSAPGTALLF 91 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH------HHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3455678888889999999999999999999999999999999999886 4455555555554444333344556
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHH
Q 047229 432 FASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVA 511 (599)
Q Consensus 432 i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (599)
+..++.|++.+...+..+.++.|.++ ++++.+.|+.+....+|.. +++.+.+.+.+... ..|+..
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-i~~~~~~~l~~~~~-------------~~w~~~ 156 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAA-LAAAATVPLAQHSG-------------GHWQQA 156 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh-------------hhHHHH
Confidence 66777888888877777888888886 6899999999988888875 78888887766521 137888
Q ss_pred HHHHHHHHHH
Q 047229 512 FVTISAATFF 521 (599)
Q Consensus 512 f~~~~~~~~i 521 (599)
|...+++.++
T Consensus 157 f~~~~~~~~~ 166 (355)
T TIGR00896 157 LAWWALPALL 166 (355)
T ss_pred HHHHHHHHHH
Confidence 7766654443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-08 Score=107.30 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=109.7
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHH
Q 047229 367 PTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-------HNSLYFASIIIGF 439 (599)
Q Consensus 367 ~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~l~g~ 439 (599)
+..+.+.+.+...++..++.++.|+++||+|||+ .+..+.++..++.++..... ...+++..++.|+
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR------VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV 127 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHH
Confidence 3445567888899999999999999999999886 45555555555554444322 2346677888899
Q ss_pred HhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCC-C------Cccc-cCcchHHHH
Q 047229 440 CLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGK-G------GLNC-IGARCYRVA 511 (599)
Q Consensus 440 ~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~-~------~~~~-~~~~~~~~~ 511 (599)
+.|...+..+.+++|.+|++.||.+.++.+....+|.. +++.+...+........+. + ...+ ....+|+..
T Consensus 128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~ 206 (502)
T TIGR00887 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL-AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRIL 206 (502)
T ss_pred HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccccccccccccchhcccHHHH
Confidence 99999999999999999999999999999988888865 7776666554321110000 0 0000 001359999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 047229 512 FVTISAATFFACIVSIILVLRTKNF 536 (599)
Q Consensus 512 f~~~~~~~~i~~i~~~~~~~~~~~~ 536 (599)
|.+.++.+++..+.. +..+++.++
T Consensus 207 ~~~~~ip~~i~~~~~-~~lpESpr~ 230 (502)
T TIGR00887 207 IGFGAVPALLALYFR-LTIPETPRY 230 (502)
T ss_pred HHHHHHHHHHHHHHH-HhCCCCHHH
Confidence 977666555544443 344555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=105.09 Aligned_cols=173 Identities=17% Similarity=0.128 Sum_probs=129.2
Q ss_pred HHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHH
Q 047229 328 LQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLL 407 (599)
Q Consensus 328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~ 407 (599)
..-+|+|.|..+++...+...+.......++.+..++.-|+...++......+..++-.+++|.++||+.||+ +
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrr------i 77 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRR------I 77 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH------H
Confidence 3457889998888888776665555555556666666667777888888888888999999999999998876 4
Q ss_pred HHHHHHHHHHHHHHH---HH---hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhh
Q 047229 408 LTLVILFSCIGYLLI---AF---AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNV 481 (599)
Q Consensus 408 ~~~~~~~~~~~~~~~---~~---~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~ 481 (599)
+..+-++..+..+.+ .. .+.+.+++..++.|++.....|...+++.|++|+++...+.++..+..++... +||
T Consensus 78 li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~-iGP 156 (524)
T PF05977_consen 78 LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI-IGP 156 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh-ccc
Confidence 444444433322221 11 23455677788889999999999999999999999999999999999999865 899
Q ss_pred hHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHH
Q 047229 482 RVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFA 522 (599)
Q Consensus 482 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 522 (599)
.++|.+.... +...+|.+.++..++.
T Consensus 157 algG~Lva~~---------------G~~~~f~inalsfl~~ 182 (524)
T PF05977_consen 157 ALGGILVAFF---------------GAAAAFLINALSFLIS 182 (524)
T ss_pred hHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Confidence 9999998873 4666777766554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-08 Score=102.29 Aligned_cols=137 Identities=14% Similarity=-0.001 Sum_probs=95.6
Q ss_pred HHHHHhhHHHHH-hHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 44 SYMFALYSNDIK-SSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 44 ~~~~~~~~~~l~-~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
.+....+.|.+. +++|.+..+.+++.....+... ..++.|++.||+|||+.+.++..+..+..+....... ..+
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 310 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL----DSG 310 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh----cCC
Confidence 444455556554 7789999999886655555554 4889999999999999877655544433211111111 113
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHH-HHhhhhhHHHHHHHHHHhcCC
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLL-KGLIGLSGAIMTQIYHAVNGD 184 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~-~~~~~lg~~i~~~i~~~~~~~ 184 (599)
+.+.+++..++.|++.+...+.....+.|.+|+ +|+++.++. ..+..+|+.++|.+.+.+.+.
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 311 SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375 (394)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence 566666778888988888888889999999985 599999984 455557777888887776653
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-08 Score=102.75 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=119.4
Q ss_pred cchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhh----hhhhccCCchHHHHHHHHHHHHHHHHHH
Q 047229 348 GGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEI----FLAKYKVPRPLLLTLVILFSCIGYLLIA 423 (599)
Q Consensus 348 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr----~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 423 (599)
........++++|.+++|.+....+.+.....+.+.+..++.|+++|| +|||+ ..+..+....+++++++.
T Consensus 18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr-----p~il~g~~~~~~~l~ll~ 92 (477)
T TIGR01301 18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR-----PFIAAGAALVAFAVILIG 92 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH-----HHHHHHHHHHHHHHHHHH
Confidence 334445566778888899999999999999999999999999999995 77665 334444555555555544
Q ss_pred Hhhh------------------hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcc--cchhhhhhccchhhhhHhhhhH
Q 047229 424 FAVH------------------NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHY--STLYNVGSVSSPIGSYIFNVRV 483 (599)
Q Consensus 424 ~~~~------------------~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~--g~~~g~~~~~~~ig~~i~~~~l 483 (599)
.... ....+...+..++.+...+...++++|.+|++++ +.++++.+...++|+. +++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i-lg~~~ 171 (477)
T TIGR01301 93 FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV-LGYAA 171 (477)
T ss_pred hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3221 1122233344567777777788999999998865 5788888888899975 77776
Q ss_pred HHHH--HhhhhhhcCC-CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 484 AGRL--YDREALKQGK-GGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 484 ~g~~--~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
++.. .+...-.... .+.. ..+++..|++.+++.+++.++..+..+|..
T Consensus 172 g~~~~~~~~~~~~~~~~~~~~---~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 172 GAYSGLYKIFPFTKTEACGVS---CANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHhHHHhcccccccccccc---cchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 6653 1211100000 0111 135899999988888888887777665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-09 Score=99.48 Aligned_cols=149 Identities=12% Similarity=0.165 Sum_probs=129.2
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhh
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVH-NSLYFASIIIGFCLG 442 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~g~~~g 442 (599)
.+-++.+.+++++...+.+++.+++.|.+.||+|+|. -+.++..++..+.+++++.+. ..++++-.+-|++..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~i------pm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKI------PMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA 174 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhcccc------HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence 3556788899999999999999999999999999875 678888888888888887764 456677888899999
Q ss_pred hHHHHHHHHHHHhhCCCc-ccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHH
Q 047229 443 AQLSLLVTIISELFGLKH-YSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 443 ~~~~~~~~~~~e~~~~~~-~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 521 (599)
.......+++++.||.++ ||++.|+.-....+|-. +||+++|.+||. .++..+|.++++++++
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~l-vgPpfGGilYe~---------------~Gk~aPFlVL~~v~Ll 238 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVL-VGPPFGGILYEF---------------AGKSAPFLVLAIVLLL 238 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccce-ecCCcccchHhh---------------cCCcCcHHHHHHHHHH
Confidence 999999999999999876 59999999999999965 999999999999 5699999999999999
Q ss_pred HHHHHHHHHhhhc
Q 047229 522 ACIVSIILVLRTK 534 (599)
Q Consensus 522 ~~i~~~~~~~~~~ 534 (599)
-..+.++....++
T Consensus 239 d~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 239 DGALQLLVIEPTE 251 (464)
T ss_pred HHHHHHheeCccc
Confidence 8888877765544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-06 Score=88.87 Aligned_cols=102 Identities=13% Similarity=-0.066 Sum_probs=79.4
Q ss_pred HHHHHHhHhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHH
Q 047229 68 VSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVT 147 (599)
Q Consensus 68 ~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~ 147 (599)
....+....+..++.+.+.|+.|+|+.+.+|......-.+.+ . .+|-+.+++..++.|+|.+..+..--.+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf--l-------~~N~y~~yfssallG~Gaallw~GqG~y 126 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF--L-------FPNSYYLYFSSALLGFGAALLWTGQGGY 126 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH--H-------hcchHHHHHHHHHhhhhHHheeccccee
Confidence 455555566678899999999999999999998776653332 1 1456778889999999999999988899
Q ss_pred HhhcCC-CCccchhHHHHHhhhhhHHHHHHHH
Q 047229 148 CVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIY 178 (599)
Q Consensus 148 ~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~ 178 (599)
++++.+ +++.+..++.++....+.++++.+.
T Consensus 127 lt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 127 LTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999996 5588899998887767666664443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-09 Score=111.51 Aligned_cols=151 Identities=20% Similarity=0.215 Sum_probs=114.1
Q ss_pred hHHHHHHcCCC---CcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHH
Q 047229 357 MGQIGKALGYP---THSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYF 432 (599)
Q Consensus 357 ~~~~~~~~g~~---~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 432 (599)
.+.+.++.+++ +.+.++..+...++..++.++.|+++||+|||+ .+..+.++..++.++.... +...+++
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~------~~~~~~~~~~i~~~~~~~~~~~~~~~~ 185 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKK------VLLLSTLVTAVSGVLTAFSPNYTVFLV 185 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchH------HHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 34455566777 778889999999999999999999999999885 5566666666665554443 3455667
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHH
Q 047229 433 ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAF 512 (599)
Q Consensus 433 ~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f 512 (599)
..++.|++.+...+....++.|.+|+++|+.+.++...+..+|.. ++|.+...+ .. |+..|
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~-~~-----------------wr~~~ 246 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV-LLPLVAYFI-PD-----------------WRWLQ 246 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHH-HHHHHHHHh-hH-----------------HHHHH
Confidence 788889999999999999999999999999999998877777754 666554432 22 78888
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 047229 513 VTISAATFFACIVSIILVLRT 533 (599)
Q Consensus 513 ~~~~~~~~i~~i~~~~~~~~~ 533 (599)
++.++..++..+.. ++.++.
T Consensus 247 ~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 247 LAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred HHHHHHHHHHHHHH-HhcCCC
Confidence 88887776666555 333443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=100.87 Aligned_cols=176 Identities=12% Similarity=0.056 Sum_probs=120.8
Q ss_pred hhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhh-----hhhccCCc
Q 047229 330 AIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIF-----LAKYKVPR 404 (599)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~-----g~r~~~~~ 404 (599)
..++++.+.++...+............+|.++++.|.+..+.+.. +..+.. .++++++|+++||+ |||+
T Consensus 8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr---- 81 (491)
T PRK11010 8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRR---- 81 (491)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCch----
Confidence 334444544444444444444445566788888889887777775 222222 26889999999999 6554
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhh
Q 047229 405 PLLLTLVILFSCIGYLLIAFAV----HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFN 480 (599)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~ 480 (599)
..+..+.+..+++...+...+ ...+.+..++.+++.+...+...++..|.+|+++|+.+.++...+..+|.. ++
T Consensus 82 -~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~l-lg 159 (491)
T PRK11010 82 -GWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAML-VS 159 (491)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH-HH
Confidence 345555555555554443322 224455666778888888888889999999999999999999999999865 78
Q ss_pred hhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 047229 481 VRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSI 527 (599)
Q Consensus 481 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 527 (599)
+.+.+.+.+.. .+|+..|++.+++.++..+..+
T Consensus 160 ~~l~~~l~~~~--------------~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 160 GGLALWLADRY--------------LGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHhcc--------------cCHHHHHHHHHHHHHHHHHHHH
Confidence 87888877731 3699999998877766655443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-08 Score=115.72 Aligned_cols=177 Identities=10% Similarity=0.009 Sum_probs=116.2
Q ss_pred HHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH-HHc----CCC-CcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 047229 328 LQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG-KAL----GYP-THSIASFISLISIWNFLGRIVAGFASEIFLAKYK 401 (599)
Q Consensus 328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----g~~-~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~ 401 (599)
+.++++++|+.+++..++...........+..+. ..+ +.+ ....++..+.+.+...+..++.|+++||++||+-
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 3467778887777666665443222222212111 111 111 1234556677888899999999999999998851
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhh
Q 047229 402 VPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNV 481 (599)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~ 481 (599)
. ..+.....+....+.+.+...+.+.+++..++.|++.+...+...+++.+.++++.++.+.|+.+++..+|.. +||
T Consensus 85 ~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~-igp 161 (1140)
T PRK06814 85 A--KILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAIL-LGT 161 (1140)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHH-HHH
Confidence 0 0111122222222222222244566778888899999999999999999999999999999999999999975 999
Q ss_pred hHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHH
Q 047229 482 RVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFA 522 (599)
Q Consensus 482 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 522 (599)
.++|.+.+. .+|+..|....++.+++
T Consensus 162 ~l~g~l~~~---------------~~~~~~~~~~~~~~~~~ 187 (1140)
T PRK06814 162 IIGGLATIS---------------GNFVILVALLMGIAVLG 187 (1140)
T ss_pred HHHHHHHhc---------------cccHHHHHHHHHHHHHH
Confidence 999999886 35777774444434433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.3e-08 Score=100.53 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-h--------hhHHHHHHHHHHHhhhH
Q 047229 374 FISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-H--------NSLYFASIIIGFCLGAQ 444 (599)
Q Consensus 374 ~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~i~~~l~g~~~g~~ 444 (599)
.++...++..+|.++.|+++||+|||+ .+..+.++..++.++....+ . ..+.+.-++.|++.|+.
T Consensus 68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~ 141 (432)
T PRK10406 68 VFAAGFLMRPIGGWLFGRIADKHGRKK------SMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGE 141 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344555666799999999999999886 66677777766666554422 1 23556677889999999
Q ss_pred HHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHH
Q 047229 445 LSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 445 ~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 521 (599)
++....++.|.+|+++||...++...+...|.. +++.+...+.....+.. ....+|+..|++.++..++
T Consensus 142 ~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~~-------~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 142 YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQL-LALLVVVVLQQTLEDAE-------LREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHH-------HhccchHHHHHHHHHHHHH
Confidence 999999999999999999988887766666643 55544333322110000 0014699999886665544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-07 Score=98.39 Aligned_cols=152 Identities=10% Similarity=0.041 Sum_probs=110.6
Q ss_pred hhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhh-----hhhccCCchHHHHHHHHHHHHHHHHHHHh
Q 047229 351 LAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIF-----LAKYKVPRPLLLTLVILFSCIGYLLIAFA 425 (599)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (599)
......+|.++++.|+|..+.+++..+... .+..+++|+++||+ |||+ ..+..+.++.+++...+...
T Consensus 16 ~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr-----~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 16 ALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRR-----GWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcch-----hHHHHHHHHHHHHHHHHHhc
Confidence 335567899999999999999988655554 58899999999999 6553 24555555555555444433
Q ss_pred h----hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCcc
Q 047229 426 V----HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLN 501 (599)
Q Consensus 426 ~----~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~ 501 (599)
. .+.+++..++.+++.....+...+++.|.+|+++|+.+.++...+..+|.. +++.+.+.+.+..
T Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i-~g~~l~~~l~~~~---------- 157 (402)
T PRK11902 89 PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAML-VSGGLALWLADRV---------- 157 (402)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHH-HHhHHHHHHHhcc----------
Confidence 1 122344445567777777788889999999999999999999988888865 7777777777641
Q ss_pred ccCcchHHHHHHHHHHHHHHHHH
Q 047229 502 CIGARCYRVAFVTISAATFFACI 524 (599)
Q Consensus 502 ~~~~~~~~~~f~~~~~~~~i~~i 524 (599)
.+|+..|++.+++.++..+
T Consensus 158 ----~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 158 ----LGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred ----cCHHHHHHHHHHHHHHHHH
Confidence 3599999988877665444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-07 Score=98.97 Aligned_cols=145 Identities=14% Similarity=0.008 Sum_probs=107.7
Q ss_pred HHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 047229 337 LILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSC 416 (599)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 416 (599)
..+.+.++............+|.+.+++|.++.+.++..+.+.++..++.++.|++.||+|+|+ .+..+.++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~------~l~~g~~~~~ 102 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHH
Confidence 3444444444444444555677776778999999999999999999999999999999999886 6677777777
Q ss_pred HHHHHHH---H-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHH
Q 047229 417 IGYLLIA---F-AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLY 488 (599)
Q Consensus 417 ~~~~~~~---~-~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~ 488 (599)
++.+++. . .+...+.+..++.|++.|...+....++.|..+++.+....++......+|.. ++|.+++.+.
T Consensus 103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~-~g~~~g~~l~ 177 (438)
T PRK10133 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 7765542 2 23445667778889999999999999888876655555567787777778865 7777665543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=109.09 Aligned_cols=165 Identities=10% Similarity=0.108 Sum_probs=119.9
Q ss_pred chHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh---------
Q 047229 356 NMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV--------- 426 (599)
Q Consensus 356 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 426 (599)
.++.+-++.+++..+.+++.+.+.++..++.++.+++.||.+||+ .+.++.++++++.+++..++
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~------~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI------VIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce------EEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 345555667999999999999999999999999999999998876 34555555555555443221
Q ss_pred -------------------------------------------hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccc
Q 047229 427 -------------------------------------------HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYST 463 (599)
Q Consensus 427 -------------------------------------------~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~ 463 (599)
...+++.-++.|++.+..++....++.|.+|+++++.
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~ 208 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL 208 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence 0124467788899999999999999999999999999
Q ss_pred hhhhhhccchhhhhHhhhhHHHHHHhhhhhhcC-------C--CCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 464 LYNVGSVSSPIGSYIFNVRVAGRLYDREALKQG-------K--GGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 464 ~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~-------~--~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
..|+.+....+|.. +|+.+++.+.+.+.+... . .++.. .++|+..|++.+++.++..+..+++
T Consensus 209 ~~~i~~~~~~iG~~-lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW--iGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 209 YIGILESIAVFGPA-FGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW--IGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHhhhH-HHHHHHHHHHhcccccccCCCCCCCCCCCCccH--HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999976 899998888765421100 0 00000 1247778888877776655544333
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-07 Score=94.69 Aligned_cols=128 Identities=13% Similarity=0.031 Sum_probs=97.9
Q ss_pred hHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHH
Q 047229 50 YSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCL 128 (599)
Q Consensus 50 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 128 (599)
+.|.+.++.|.+..+.+.+.....+..+. .++.|++.||+|+|+.+.++.+...++.+..... ++.+.+++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~ 298 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--------TALPWLIV 298 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHH
Confidence 33445567999999999865565565554 7899999999999999999888877775544222 67888888
Q ss_pred HHHHHhccccccchhHHHHHhhcCCCCccchhHHHH-HhhhhhHHHHHHHHHHhcCCC
Q 047229 129 YMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLK-GLIGLSGAIMTQIYHAVNGDN 185 (599)
Q Consensus 129 ~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~-~~~~lg~~i~~~i~~~~~~~~ 185 (599)
..++.|++.+...+....++.+..++++++..++.. ...++|..+++.+++.+.+..
T Consensus 299 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 299 IQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999988888787777765667888888875 555677778888877776543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-07 Score=95.78 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=89.4
Q ss_pred HHHHhhHH-HHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 45 YMFALYSN-DIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 45 ~~~~~~~~-~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
|....+.| .+.+++|.+.+....+.....+.. +..++.|++.||+|||+++..+.++..++.+.+..... ..++
T Consensus 267 ~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~ 342 (438)
T PRK09952 267 YIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE----AQSI 342 (438)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----cCCh
Confidence 33333444 346778988876655443333333 44779999999999999998887665554333322211 1133
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHH-HhhhhhHHHHHHHHHHhcC
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLK-GLIGLSGAIMTQIYHAVNG 183 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~-~~~~lg~~i~~~i~~~~~~ 183 (599)
.+.+++..++.|++.+...+....++.|.+|. .|+.+.++.. .+..+|+.++|.+.+.+.+
T Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~ 405 (438)
T PRK09952 343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT 405 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777888887777778889999984 5888888854 3444788888888887765
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.2e-08 Score=94.99 Aligned_cols=176 Identities=15% Similarity=0.100 Sum_probs=116.3
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 414 (599)
+.|+..+.+..+......+....+.+-++.|+|+.|.+++.++..+.+.+-|+..|++.||+|.|+ ....+.++
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~------~~~~s~~l 88 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRK------WTILSMLL 88 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchH------HHHHHHHH
Confidence 444444444443333333333334444668999999999999999999999999999999999775 34455555
Q ss_pred HHHHHHHHHHh--h--hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 415 SCIGYLLIAFA--V--HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 415 ~~~~~~~~~~~--~--~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
..+-.+.+... . .+.+++...+.|++ |+.++....++++.||++++|.+.|+.. .+++|.. +...+...+...
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a-v~q~~~P~v~~~ 165 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA-VAQLVAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHH-HHHHHHHHHHHH
Confidence 44443333322 1 22444555555654 4556777789999999999999999998 7888875 555555555555
Q ss_pred hhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 047229 491 EALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVL 531 (599)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 531 (599)
.+ ...|+.+..+..+..++..+..++..+
T Consensus 166 ~g------------~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 166 FG------------FLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred Hh------------hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 21 012777777777777776666665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=97.22 Aligned_cols=164 Identities=17% Similarity=0.145 Sum_probs=106.8
Q ss_pred HHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhh-HHHH-----HHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 339 LFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASF-ISLI-----SIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
.++..++...-...+....|.+.++++.++.+.+.. .+.. .+...+|.++.|+++||+|||+ .+..+.
T Consensus 20 ~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~------~l~~~~ 93 (434)
T PRK15075 20 VTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK------GLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH------HHHHHH
Confidence 334444444444445556677777788776664433 2222 2333578899999999999886 566666
Q ss_pred HHHHHHHHHHHHhhh-h--------hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhH
Q 047229 413 LFSCIGYLLIAFAVH-N--------SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRV 483 (599)
Q Consensus 413 ~~~~~~~~~~~~~~~-~--------~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l 483 (599)
.+..++.++....+. . .+.+.-++.|++.+..++....+++|.+|+++|+...++.....+++.. +++.+
T Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~-~g~~~ 172 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV-FAALL 172 (434)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH-HHHHH
Confidence 666666666554432 1 2355667889999988888889999999999999999998887777754 66665
Q ss_pred HHHHHhhhhhhcCCCCccccCcchHHHHHHHHH
Q 047229 484 AGRLYDREALKQGKGGLNCIGARCYRVAFVTIS 516 (599)
Q Consensus 484 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 516 (599)
++.+........ ....+|+..|++..
T Consensus 173 g~~l~~~~~~~~-------~~~~gWr~~f~~~~ 198 (434)
T PRK15075 173 GYLLNQWLSPAQ-------MAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHhCCHHH-------HhccchHHHHHHHH
Confidence 555432211000 00146999988643
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=91.25 Aligned_cols=115 Identities=22% Similarity=0.254 Sum_probs=94.6
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhhhHH
Q 047229 367 PTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLY-FASIIIGFCLGAQL 445 (599)
Q Consensus 367 ~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l~g~~~g~~~ 445 (599)
+...+|++-+.+++.+++.++.+|.++||+|||. ++..+....++.+++.+..+.-..+ ..-++.|+..|- .
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp------vll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l 138 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP------VLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-L 138 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-h
Confidence 4466788889999999999999999999999885 7777777777777777665544333 336677777766 4
Q ss_pred HHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHh
Q 047229 446 SLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489 (599)
Q Consensus 446 ~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~ 489 (599)
++.-++++|++++++++.+.+.+.+...+|- ++||.++|.+..
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGf-ilGPmIGgyla~ 181 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGF-ILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcch-hhcchhhhHHHh
Confidence 6678999999999999999999999999995 599999999877
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=93.84 Aligned_cols=164 Identities=14% Similarity=0.045 Sum_probs=107.9
Q ss_pred hcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh----hhh
Q 047229 354 IDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV----HNS 429 (599)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 429 (599)
...+|.+.++.|+|..+.+..... .+...+ .++.|+++||+..|+.-+|+..+..+.++.++....+.... ...
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~ 85 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL 85 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 345778888899999988888544 444444 88999999998322100122334455555554443333321 122
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHH
Q 047229 430 LYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYR 509 (599)
Q Consensus 430 ~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (599)
+....++.+++.+...+...+++.|.+|+++|+.+.|+...+..+|.. +++.+.+.+.+..+.+.. ...+|+
T Consensus 86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~l~~~~g~~~~-------~~~~wr 157 (356)
T TIGR00901 86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGML-LSGSLALVLASPEFANTG-------LITLWG 157 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHH-HHHHHHHHHhhhcccccc-------cccccH
Confidence 334444566777777778888999999999999999999988899865 788888877766421110 123499
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047229 510 VAFVTISAATFFACIVSI 527 (599)
Q Consensus 510 ~~f~~~~~~~~i~~i~~~ 527 (599)
..|++.+++.++..+...
T Consensus 158 ~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999888876666554443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=110.60 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=108.3
Q ss_pred HhhcchhHHHHHHHHHhhhcchhhhhcch-HHHHHHcCCCC--cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCch
Q 047229 329 QAIFSIDMLILFTATTCSIGGALAAIDNM-GQIGKALGYPT--HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRP 405 (599)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~--~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~ 405 (599)
+.++++.|+.+++..++...........+ +.+..+.+.+. ...++..+++.++..++.++.|+++||+|||+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~----- 78 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNR----- 78 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHH-----
Confidence 45677777777766666543333332222 23333344432 33466678888899999999999999999886
Q ss_pred HHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhh
Q 047229 406 LLLTLVILFSCIGYLLIA----FAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNV 481 (599)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~ 481 (599)
++..+.++.++..++.. ..+...+++..++.|++.+...+...++++|.+|+++++.+.|+...+..+|.. +++
T Consensus 79 -~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~-lg~ 156 (1146)
T PRK08633 79 -VIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAIL-AGT 156 (1146)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHH-HHH
Confidence 44444433332222211 223445667778889999999999999999999999999999999999999965 899
Q ss_pred hHHHHHHhh
Q 047229 482 RVAGRLYDR 490 (599)
Q Consensus 482 ~l~g~~~~~ 490 (599)
.+++.+.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 999988765
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=97.42 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHhhhHHHH
Q 047229 372 ASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA----VHNSLYFASIIIGFCLGAQLSL 447 (599)
Q Consensus 372 ~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~l~g~~~g~~~~~ 447 (599)
+..++.+.+++++|.+..|+++||+|||. .+.++.++..++.++.... ....+.++-++.|+..|.....
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~------~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKN------ALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence 44568888999999999999999999985 4555555555554443322 2445778889999999999999
Q ss_pred HHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHH-HHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 047229 448 LVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVA-GRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVS 526 (599)
Q Consensus 448 ~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 526 (599)
.+.++.|..|.+.||....+..++..+|.. ++..++ ..+.+. ...|.+.+.+..+.+++..+..
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l-l~~~~~l~~ilGt--------------~~~W~~l~~~~~i~~~~~l~~l 201 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVIGIL-LGQVLGLPSLLGT--------------EDLWPYLLAFPLIPALLQLALL 201 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHHHHH-HHHHHccHHhcCC--------------CcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888887777754 442211 122222 1347777777777777666655
Q ss_pred HHHHhhhcc
Q 047229 527 IILVLRTKN 535 (599)
Q Consensus 527 ~~~~~~~~~ 535 (599)
.++. +..|
T Consensus 202 ~~~P-ESPk 209 (485)
T KOG0569|consen 202 PFLP-ESPK 209 (485)
T ss_pred hcCC-CCcc
Confidence 5444 4433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.1e-07 Score=81.87 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=67.9
Q ss_pred HHHhHhCCCHHHHHHHHHHHHhH-hhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH
Q 047229 53 DIKSSLGYDQTTLNLVSFFKDLG-GNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYML 131 (599)
Q Consensus 53 ~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~ 131 (599)
++-+.++....|++.+..+..-. .+++.+.|-++||-|||+.-+. +.+.+++++ .+- .++.|-.++++|+
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvt----ycitYiLsC--iTK---hSpqYkVLmVGR~ 132 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT----YCITYILSC--ITK---HSPQYKVLMVGRV 132 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceee----ehHHHHHHH--Hhh---cCCceEEEeehhh
Confidence 45567888888988865554444 4569999999999999997444 333333332 223 2377889999999
Q ss_pred HHhccccccchhHHHHHhhcCCCCccchhHH
Q 047229 132 IGANSQSFPNTGALVTCVKNFPESRGVVIGL 162 (599)
Q Consensus 132 l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~ 162 (599)
+.|+..+..+.+--.....-..++|+.-.-+
T Consensus 133 LGGiaTsLLFSaFEsWliaEHnekr~FeqqW 163 (454)
T KOG4332|consen 133 LGGIATSLLFSAFESWLIAEHNEKRGFEQQW 163 (454)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhccCChHhh
Confidence 9999998887766665433333455544444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=98.25 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=123.8
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHH
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV---HNSLYFASIIIGFC 440 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~g~~ 440 (599)
..++..+-+++.+....+.+++.+.+|++.||+|.|+ ++..+.++.+++.++..... .+.+.+.-++.|++
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~------v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARR------VFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG 141 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchH------HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence 4778888999999999999999999999999999875 66666667666666654432 23456777888999
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHH
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATF 520 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 520 (599)
.|..+|....+.++-.|+++|++..++...+.++|.+ ++-++.|.+-+. ..+|+..||+.+++++
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v-~~mp~sg~lc~s--------------~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTI-ITMPVSGLLCES--------------SLGWPSIFYVFGIVGL 206 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhcc--------------CCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 666688888777 2579999999999988
Q ss_pred HHHHHHHHHHhhhc
Q 047229 521 FACIVSIILVLRTK 534 (599)
Q Consensus 521 i~~i~~~~~~~~~~ 534 (599)
+..++..+++....
T Consensus 207 i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 207 IWFILWFLFYSDSP 220 (466)
T ss_pred HHHHHHHHHhcCCc
Confidence 87777666655433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=91.31 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=107.3
Q ss_pred HhhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCCh--HHHHHHHHHHHHHHHHHHHH-Hh
Q 047229 39 SVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPW--IVLLSGSIMNFFGFFMIWLS-VS 114 (599)
Q Consensus 39 ~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r--~~~~ig~~~~~~g~~~~~~~-~~ 114 (599)
+..|.....+.....-.+++|.+.+++..+.....+.++. ++++|++.||+|.| ++++++.++..+-.+...+. ..
T Consensus 293 ~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~ 372 (477)
T PF11700_consen 293 YSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWP 372 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555556666667889999999988866666666554 88999999999999 88888777664332221110 00
Q ss_pred ccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHHhcC
Q 047229 115 HRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHAVNG 183 (599)
Q Consensus 115 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~~~~ 183 (599)
... ..++.+.+.+..++.|+..|..++.+-++.++..|+ +.+...|++....-..+.++|.+.+.+.+
T Consensus 373 ~~~-g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~ 441 (477)
T PF11700_consen 373 SFF-GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITD 441 (477)
T ss_pred ccc-CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 125678888999999999999999999999999984 68999999988888888888888777654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=87.42 Aligned_cols=183 Identities=13% Similarity=0.048 Sum_probs=117.9
Q ss_pred HhhcchhHHHHHHHHHhhhcchhhh-hcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHH
Q 047229 329 QAIFSIDMLILFTATTCSIGGALAA-IDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLL 407 (599)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~ 407 (599)
+++.++...++++...+. +.+..+ .+++-..+++.|-.+..-|......-.+-++.-++.+++..|+|+-+ +
T Consensus 366 ~~~~s~~~llff~~av~m-G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~------v 438 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVM-GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN------V 438 (618)
T ss_pred HHhcCCCEEehhHHHHHH-HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc------e
Confidence 456666544433332222 223333 33344456777765555665555556667777788888888887654 4
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhc-cchhhhhHhhhhHHH
Q 047229 408 LTLVILFSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSV-SSPIGSYIFNVRVAG 485 (599)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~-~~~ig~~i~~~~l~g 485 (599)
+.++.....+=++.+... ++|.....-++-|+..+..+....+|++...|++.+.++.|+... .-.+|-. +|.+++|
T Consensus 439 ~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g-~GslIGG 517 (618)
T KOG3762|consen 439 MYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKG-LGSLIGG 517 (618)
T ss_pred eeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcc-hhhhhhh
Confidence 455554444444444433 344455566788999999999999999999999999999998753 2234432 5566688
Q ss_pred HHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047229 486 RLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.+..+ .+-+..|..+++.+++.+++...+.+..+
T Consensus 518 ~~v~~---------------fg~~ttf~~~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 518 FVVER---------------FGARTTFRIFGIACLVTLALFISIQLLLK 551 (618)
T ss_pred hhhee---------------ehhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 87777 34677888888888777776665554444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=95.49 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=118.9
Q ss_pred HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 047229 362 KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCL 441 (599)
Q Consensus 362 ~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~ 441 (599)
++.++...+.+...+++.++.+++.+.++++.||+.-.+ .+...+.+..+.+.+.....+...+.+.-++.|+..
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~-----~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK-----GLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE 148 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 445777788899999999999999999999999995221 222222222222222233334556777889999999
Q ss_pred hhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHH
Q 047229 442 GAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 442 g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 521 (599)
+..+|....+++..|.++++|.-.|+.+....+|++ +|..+...++...+.. +..+|++.|++-++++++
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i-~ggliA~g~~~~~~~~---------~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNI-FGGLIAYGVFKLNGSG---------GLAGWRWLFIIEGVITLV 218 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhH-HHHHHHHHhhhhcCCC---------CcCCceeehhHHHHHHHH
Confidence 999999999999999999999999999999999976 7777777765532211 124699999999999888
Q ss_pred HHHHHHHHHhhhc
Q 047229 522 ACIVSIILVLRTK 534 (599)
Q Consensus 522 ~~i~~~~~~~~~~ 534 (599)
..++.++..+...
T Consensus 219 ~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 219 LGIVVFFFLPDNP 231 (495)
T ss_pred HHheEEEEecCCh
Confidence 8887777665544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=86.48 Aligned_cols=136 Identities=11% Similarity=0.038 Sum_probs=97.2
Q ss_pred HhhhhHHHHHhhHHHHHh---HhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHh
Q 047229 39 SVNGSSYMFALYSNDIKS---SLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVS 114 (599)
Q Consensus 39 ~~~g~~~~~~~~~~~l~~---~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~ 114 (599)
+..|.......+.+.+.+ .+|+++++.++..+.+..+... .++.+++.||+|+|+.+.++.++..++.++....
T Consensus 151 ~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-- 228 (310)
T TIGR01272 151 VYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-- 228 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--
Confidence 344454444443444432 3799999999977777777655 8899999999999999988887777765433221
Q ss_pred ccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCC
Q 047229 115 HRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD 184 (599)
Q Consensus 115 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~ 184 (599)
++... ...-++.|++.+..+|.......+.+|++.+.+.++.. ...+|+.+.|++.+.+.+.
T Consensus 229 ------~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~~-~~~~Gg~i~P~l~G~lad~ 290 (310)
T TIGR01272 229 ------HGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGILC-LAIVGGAIVPLLQGSLADC 290 (310)
T ss_pred ------CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HHHhcchHHHHHHHHHHHh
Confidence 12222 23445789999999999999999999887777778764 4558999999988877653
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5e-07 Score=96.29 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHH
Q 047229 372 ASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VHNSLYFASIIIGFCLGAQLSLLVT 450 (599)
Q Consensus 372 ~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~ 450 (599)
+++.+...++..+|.++.|+++|++|||+ .+.++.++..++.++.... +...+.++-++.|+|.|+.....+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~------~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK------TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchh
Confidence 78899999999999999999999999986 6777777777777776654 4566888999999999999999999
Q ss_pred HHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 451 IISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 451 ~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
+.+|..|++.||...+.......+|.. ++ ++.+...+.. ..+|+..+.+..+.+++..+. .++.
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~-~~-~~~~~~~~~~-------------~~~Wr~~~~~~~i~~~~~~~~-~~~~ 229 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGIL-LG-YCINYGTSKV-------------YAGWRIPLGLALIPAVILALG-MLFL 229 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHH-HH-HHHhhhhccC-------------CccHHHHHHHHHHHHHHHHHH-HHhC
Confidence 999999999999999998888877743 55 4444444331 025998888888877777777 5555
Q ss_pred hhhcc
Q 047229 531 LRTKN 535 (599)
Q Consensus 531 ~~~~~ 535 (599)
+++.+
T Consensus 230 pesp~ 234 (513)
T KOG0254|consen 230 PESPR 234 (513)
T ss_pred CCChH
Confidence 55444
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-07 Score=98.87 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=115.8
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhh
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLG 442 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g 442 (599)
...+........+++.++..+|.++.|+++||+|||+ ++..+.++..++.+..+..+ ...+.+.-++.|++.+
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~------~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKP------VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGS 186 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHH------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcc
Confidence 3556677777889999999999999999999999886 67777777777666555543 4567788899999999
Q ss_pred hHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHH
Q 047229 443 AQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFA 522 (599)
Q Consensus 443 ~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 522 (599)
+.......+..|.+++++|+.+..+ ......++. +.+...+.+... |++.+++..+..++.
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~-~~~~~~a~~~~~-----------------Wr~~~~~~~~~~~~~ 247 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGL-MLPAGAAYITRD-----------------WRWLFWIISIPSGLF 247 (521)
T ss_pred chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHH-HHHHHHHHHHhh-----------------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 656666655 667777777664 999999888877766
Q ss_pred HHHHHHHHhhhccc
Q 047229 523 CIVSIILVLRTKNF 536 (599)
Q Consensus 523 ~i~~~~~~~~~~~~ 536 (599)
.+. .++.++.+|+
T Consensus 248 ~~~-~~l~~Es~rw 260 (521)
T KOG0255|consen 248 LLL-WFLPPESPRW 260 (521)
T ss_pred HHH-HHccCcChHH
Confidence 665 4455455543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-06 Score=84.48 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=105.4
Q ss_pred HHhhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 047229 38 MSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGN-LGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHR 116 (599)
Q Consensus 38 ~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~ 116 (599)
.+..|.....+.-...-..++|++..++..+.....+.++ .+++.|++.||+|.|+++.++.++..+.++..-+.
T Consensus 263 ~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~---- 338 (438)
T COG2270 263 FYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL---- 338 (438)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc----
Confidence 3455654444443334566999999999997666666554 58999999999999999999999887775543221
Q ss_pred CCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcC
Q 047229 117 FGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNG 183 (599)
Q Consensus 117 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~ 183 (599)
..-..+.++..+.|+..|..+..+-++..+..| +|-++..|+++...-.++.++|.+.+.+.+
T Consensus 339 ----~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~ 402 (438)
T COG2270 339 ----EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ 402 (438)
T ss_pred ----cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 223456677789999999999999999999998 568999999988777878888777776654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=91.96 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=96.0
Q ss_pred hcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHH
Q 047229 331 IFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLT 409 (599)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~ 409 (599)
.||+++|.+...+++..+.......+++.++++ .|+++.+.|.+++...+...+.+++.|.++||++.||+ . +..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~--L--l~~ 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH--L--LWF 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH--H--HHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH--H--HHH
Confidence 467788888877777766666677778888876 79999999999999999999999999999999997762 1 122
Q ss_pred HHHHHHHHHHHHH-HHhh--hhhHHHH----HHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhh
Q 047229 410 LVILFSCIGYLLI-AFAV--HNSLYFA----SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVR 482 (599)
Q Consensus 410 ~~~~~~~~~~~~~-~~~~--~~~~~i~----~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~ 482 (599)
+..++...+-... ...+ ....+++ .+.++++..+..|..=+++.+.- +..+--+|-.-+.+.+|-. ++..
T Consensus 80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~a-i~s~ 156 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFA-IASL 156 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHH-HHHH
Confidence 2222222222111 1111 1112222 23334555555555544444332 5566677777777788855 6778
Q ss_pred HHHHHHhh
Q 047229 483 VAGRLYDR 490 (599)
Q Consensus 483 l~g~~~~~ 490 (599)
+.|.+++.
T Consensus 157 ~~G~L~~i 164 (412)
T PF01306_consen 157 LAGILFNI 164 (412)
T ss_dssp HHHHHHHH
T ss_pred Hhheeeee
Confidence 89988876
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-06 Score=88.22 Aligned_cols=131 Identities=8% Similarity=0.014 Sum_probs=90.4
Q ss_pred HHHHhHhCCCHHHHHHHHHHH-HhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHH
Q 047229 52 NDIKSSLGYDQTTLNLVSFFK-DLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLY 129 (599)
Q Consensus 52 ~~l~~~~~~s~~~~~~~~~~~-~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 129 (599)
+.+.+|.|+++++.+++.... ....+. .++.|++.||+|+|+.+.++.++..+..+.. ....... ..++...++..
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~ 309 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW-FAQAAFW-LAPGIAVAWSC 309 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHcc-cCCcHHHHHHH
Confidence 445556899999999965544 445555 6799999999999999988776653332222 2111111 11334444555
Q ss_pred HHHHhccccccchhHHHHHhhcC-C-CCccchhHHHHHhhhhhHHHHHHHHHHhcCC
Q 047229 130 MLIGANSQSFPNTGALVTCVKNF-P-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD 184 (599)
Q Consensus 130 r~l~G~g~g~~~~~~~~~~~~~f-p-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~ 184 (599)
.++++++.+...+.......+.. | +++|+..++.++..++|..+++.+.+.+.+.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR 366 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777666677767776 4 4589999999999999999999998887653
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-07 Score=95.45 Aligned_cols=167 Identities=10% Similarity=0.078 Sum_probs=106.3
Q ss_pred hhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhh----
Q 047229 353 AIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVH---- 427 (599)
Q Consensus 353 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 427 (599)
+..++++++++ +|.++.+++.+.++..+...+..++.|+++||.++|.+..|. .+..+.....++.+++...+.
T Consensus 18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~-~i~~~~~~~~i~~~~~~~~~~~~~~ 96 (437)
T TIGR00792 18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRP-WLLIGAIPFSIVLVLLFTTPDFSAT 96 (437)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcch-hHHHhHHHHHHHHHHHHhCCCCCcc
Confidence 34456666665 699999999999999999999999999999997765433333 345555555555544433221
Q ss_pred ---hhHHHHHHHHHHHhhhHHHHHHHHHHHhh-CCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCcccc
Q 047229 428 ---NSLYFASIIIGFCLGAQLSLLVTIISELF-GLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCI 503 (599)
Q Consensus 428 ---~~~~i~~~l~g~~~g~~~~~~~~~~~e~~-~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~ 503 (599)
....+..++.+.+++.......++..|.. ++++|+...+.......+|+. +.+.+.+.+....+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~-l~~~~~~~l~~~~~~~~-------- 167 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGL-LVAVIVLPLVSYFGGGD-------- 167 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc--------
Confidence 12233445556666665555667777876 457888888888777777765 44444444443321000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 504 GARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 504 ~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
...+|+..+.+.+++.++..++..+.
T Consensus 168 ~~~g~~~~~~i~~~l~~~~~~~~~~~ 193 (437)
T TIGR00792 168 DKFGWFMFALVLALIGVVSLIICFFG 193 (437)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 01358888888887776665554443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-05 Score=75.78 Aligned_cols=102 Identities=19% Similarity=0.264 Sum_probs=68.3
Q ss_pred HHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHH
Q 047229 68 VSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALV 146 (599)
Q Consensus 68 ~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~ 146 (599)
+..+..+-.+. .+...+..+|...+.=+++..++..+|.++.+++ ++.+.-+++-.+.+++.|.....-..
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--------~~v~~~l~Gv~las~ssg~GE~tfL~ 135 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--------PSVWVRLLGVVLASLSSGLGEVTFLS 135 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--------cchhHHHHHHHHHhhhhhhhHHHHHH
Confidence 44444445544 6677788888875544555566677776544322 67888888889999999988765555
Q ss_pred HHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 147 TCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 147 ~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
+ +..|++ ..++-+.+|.|.++++++.....+
T Consensus 136 l-t~~y~~---~~l~~wssGTG~aGl~Ga~~y~~l 166 (402)
T PF02487_consen 136 L-THFYGK---SSLSAWSSGTGGAGLVGALYYLGL 166 (402)
T ss_pred H-HHhcCc---cccccccCCcChhhHHHHHHHHHH
Confidence 4 556664 346777888888888887665443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=91.15 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=128.9
Q ss_pred HHHHHHHHhhhcchhhhhcc----hHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 337 LILFTATTCSIGGALAAIDN----MGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
|.+.+..|+.......+.+. .+.+.++.+.+..+++++.++......+..++.+.+.||+|-|. +...+.
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~------v~i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRT------VMIAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchH------HHHHHH
Confidence 55555555544444443333 44455566888888999999999999999999999999998775 778888
Q ss_pred HHHHHHHHHHHHhhhh-hHHH-HHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 413 LFSCIGYLLIAFAVHN-SLYF-ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 413 ~~~~~~~~~~~~~~~~-~~~i-~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++..+++++..+.+.. .+++ ..++.|+|.|..+.....++...| .++|+.+.|+...+..+|.. +-|.+...+.+.
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~-~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTV-VFPPLLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCccee-eHHHHHHHHHHH
Confidence 8888888887766543 3333 456678999998888888888777 49999999999999999987 556677788887
Q ss_pred hhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 047229 491 EALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVL 531 (599)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 531 (599)
.+|+.++.+.+.+.+-+.+.....++
T Consensus 197 ---------------~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 197 ---------------YGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred ---------------hCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35999999888877655555544443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-06 Score=84.13 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=82.1
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh----hh----hhHHHHHHHH
Q 047229 366 YPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA----VH----NSLYFASIII 437 (599)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~i~~~l~ 437 (599)
+++...+.......++.++|+++.|++.||+|||+ +.....++++++.+..... ++ .++...-+++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~------vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~L 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK------VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLL 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh------hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHh
Confidence 55566677788889999999999999999999987 4555555666655543321 12 3456667889
Q ss_pred HHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhh
Q 047229 438 GFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGS 476 (599)
Q Consensus 438 g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~ 476 (599)
|+|.|+=+|...++++|....+.||+-.+.+...+..|.
T Consensus 155 GiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 155 GIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 999999999999999999999999999988877766664
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=90.91 Aligned_cols=166 Identities=11% Similarity=0.045 Sum_probs=100.5
Q ss_pred hhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-HHHhh----
Q 047229 353 AIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLL-IAFAV---- 426 (599)
Q Consensus 353 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~---- 426 (599)
+..++++++++ +|+++..++.+..+..+...+..++.|+++||...|.+..|+++ ..+.+..+++..+ +..++
T Consensus 28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i-l~~~~~~~i~~~l~f~~p~~~~~ 106 (444)
T PRK09669 28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL-LWFAIPFGVVCLLTFYTPDFGAT 106 (444)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH-HHHHHHHHHHHHHHHhCCCCCcc
Confidence 34456666665 69999999999999999999999999999999766554344444 4444444444333 22221
Q ss_pred --hhhHHHHHHHHHHHhhhHHHHHHHHHHHhh-CCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCcccc
Q 047229 427 --HNSLYFASIIIGFCLGAQLSLLVTIISELF-GLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCI 503 (599)
Q Consensus 427 --~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~-~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~ 503 (599)
..+.++..++++.++........++.+|.. ++++|+...+.-.....+|+. +++.+...+....+...
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~-i~~~~~~pl~~~~~~~~-------- 177 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL-IVSVIALPLVDILGKGD-------- 177 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc--------
Confidence 122333444556666666556667888887 446788777777666666654 44443333333221100
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Q 047229 504 GARCYRVAFVTISAATFFACIVSII 528 (599)
Q Consensus 504 ~~~~~~~~f~~~~~~~~i~~i~~~~ 528 (599)
...+|+..+.+.++++++..+++++
T Consensus 178 ~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 178 EQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 0135777777776666555554433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.8e-06 Score=85.20 Aligned_cols=122 Identities=10% Similarity=0.130 Sum_probs=92.1
Q ss_pred HHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 047229 54 IKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLI 132 (599)
Q Consensus 54 l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l 132 (599)
.+..++.+ ...+.+.....+..+. .++.+++.||+|+|+++..+.++..++.+..++. ..++.+.+++.-++
T Consensus 252 ~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~l 324 (428)
T PF13347_consen 252 FTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL------GPGSPWLVLILFIL 324 (428)
T ss_pred HHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH------HhhhHHHHHHHHHH
Confidence 34445555 5666666666666655 7899999999999999999999999988776555 11478888899999
Q ss_pred HhccccccchhHHHHHhhcCC--------CCccchhHHHHHhhhhhHHHHHHHHHHhc
Q 047229 133 GANSQSFPNTGALVTCVKNFP--------ESRGVVIGLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 133 ~G~g~g~~~~~~~~~~~~~fp--------~~rg~~~g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
.|++.+..+.....++.|..+ ++.|...|.......++..+++.+.+.++
T Consensus 325 ~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 325 AGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred hHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999988999888764 12477777777777777777766665543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=81.32 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=88.8
Q ss_pred HHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLL 421 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 421 (599)
.+++.......+..+++.++++.|+|..+.|.+.+...+..+++.+++|+++||.++++ .++.+..++.++.+..
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~-----~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAK-----RILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH-----HHHHHHHHHHHHHHHH
Confidence 33333334444566788999999999999999999999999999999999999986543 1334444444443333
Q ss_pred HHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhh
Q 047229 422 IAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSY 477 (599)
Q Consensus 422 ~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~ 477 (599)
.... +.+.+.+..++..+......|..-++..+... +++.-+|-+-+.+.+|=.
T Consensus 85 ~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~ 139 (400)
T PF03825_consen 85 LAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFI 139 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHH
Confidence 3332 33445555666677777777777777777764 556777777777777643
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00035 Score=75.56 Aligned_cols=135 Identities=14% Similarity=0.048 Sum_probs=98.3
Q ss_pred HhhHHHHHhHhCCCHHHHHH-HHHHHHhHhhhhhhhhhhhccc-CChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHH
Q 047229 48 ALYSNDIKSSLGYDQTTLNL-VSFFKDLGGNLGVLAGLTYEVA-PPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQ 125 (599)
Q Consensus 48 ~~~~~~l~~~~~~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr~-G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 125 (599)
..+...+.+.+|.+.++... +..+..+..+..+++|+++|++ |++++++++.++..+|..++++..............
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 34455667789999888877 5666677778899999999997 999999999999999987765431111000011233
Q ss_pred HHHHHHHHhccccccchhHHHHHhhcCC-CC---ccchhHHHHHhhhhhHHHHHHHHHHhc
Q 047229 126 MCLYMLIGANSQSFPNTGALVTCVKNFP-ES---RGVVIGLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 126 l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~---rg~~~g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
.+++-.+..+|.|.+-+.......+-|+ ++ |-....+...+.++|++++.++...+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888999998888888998885 32 455666677777888888877776654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.2e-09 Score=109.41 Aligned_cols=148 Identities=19% Similarity=0.255 Sum_probs=105.3
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhhhH
Q 047229 369 HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV----HNSLYFASIIIGFCLGAQ 444 (599)
Q Consensus 369 ~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l~g~~~g~~ 444 (599)
...+...+...++..+|.++.|+++||+|||+ .+..+..+..++.++....+ ...+.+.-++.|++.|+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKP------ALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence 34566778889999999999999999999986 45666666666666555443 445667778999999999
Q ss_pred HHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHH
Q 047229 445 LSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACI 524 (599)
Q Consensus 445 ~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i 524 (599)
.+..+.++.|..|+++|+....+......+|.. ++..+. ........ ...|+..+.+..+.+++..+
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~-~~~~~~-~~~~~~~~-----------~~~Wr~~~~~~~~~~l~~~~ 186 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGIL-LASLIG-YIVSYYSD-----------NWGWRILLIFGAIPSLLVLL 186 (451)
T ss_pred ccccccccccccccccccccccccccccccccc-cccccc-cccccccc-----------cccccccccccccccccccc
Confidence 999999999999999999999998888777754 443322 22211100 13488888877776665544
Q ss_pred HHHHHHhhhccc
Q 047229 525 VSIILVLRTKNF 536 (599)
Q Consensus 525 ~~~~~~~~~~~~ 536 (599)
.. ++.+|+.++
T Consensus 187 ~~-~~~pESP~w 197 (451)
T PF00083_consen 187 LR-FFLPESPRW 197 (451)
T ss_pred cc-cccccccce
Confidence 44 344555443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.2e-06 Score=85.62 Aligned_cols=122 Identities=13% Similarity=0.003 Sum_probs=89.2
Q ss_pred HhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 047229 55 KSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIG 133 (599)
Q Consensus 55 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 133 (599)
++.+|.+....+++.....++.++ .++.+++.||+|+|+++.+|.++..++.+.+.+. ..++++.+++..++.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------~~~~~~~~~~~~~l~ 329 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------SVWSLPVALVALAIA 329 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc------CchhHHHHHHHHHHH
Confidence 445676655444444444455544 7899999999999999999998888886655322 224567777778889
Q ss_pred hccccccchhHHHHHhhcCCC--------CccchhHHHHHhhhhhHHHHHHHHHHhc
Q 047229 134 ANSQSFPNTGALVTCVKNFPE--------SRGVVIGLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 134 G~g~g~~~~~~~~~~~~~fp~--------~rg~~~g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
|+|.+...+....+..+..|. ++|...|+.+....+|..+++.+.+.++
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888887776642 2588888888888888888877766654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-05 Score=74.80 Aligned_cols=151 Identities=18% Similarity=0.150 Sum_probs=120.6
Q ss_pred cchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 047229 355 DNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFAS 434 (599)
Q Consensus 355 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 434 (599)
..++.+-+++|.|...++.+.++..++..+..++..++..|+|.++ .+..+.++.+++..+=...+...++...
T Consensus 33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er------~l~~~Llli~~G~~iR~~~~~~~L~~gt 106 (395)
T COG2807 33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEER------SLFLALLLIAAGILIRSLGGLPLLFLGT 106 (395)
T ss_pred hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH------HHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3455555668999999999999999999999999999999998765 5666777777776654444556788889
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHH
Q 047229 435 IIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVT 514 (599)
Q Consensus 435 ~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 514 (599)
.+.|.+.+......|..+.+.|| ++.+...|++.+...+++. +++.+.-.+.++. .+|+.+..+
T Consensus 107 ~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aa-Laa~lavpla~~~--------------~gW~~aL~~ 170 (395)
T COG2807 107 LLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAA-LAAALAVPLAQHS--------------GGWRGALGF 170 (395)
T ss_pred HHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHH-HHhhhhhHHHHhh--------------ccHHHHHHH
Confidence 99999999999999999999997 8889999999988888876 6766666666652 369999998
Q ss_pred HHHHHHHHHHHHH
Q 047229 515 ISAATFFACIVSI 527 (599)
Q Consensus 515 ~~~~~~i~~i~~~ 527 (599)
.+..+++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 8888777666543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-05 Score=72.26 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=101.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHhhHHHHHhHhCCCHHHHHH-HHHHHHhHhhhhhhhhhhhcccCChHHHHHHHHHH
Q 047229 24 LDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNL-VSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 24 ~~~~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
+.+-|+++..+++.....-..+..+ ..-+++.||+|+...+. .+..+.+....+++.|.+.||+|++...+.+..+.
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg--~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLG--PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL 340 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhh--HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence 3456766665554433322233222 12368899999999998 57777788888999999999999998776655544
Q ss_pred HH-HHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCCC-CccchhHHHHHhhhhhHHHHHHHHHH
Q 047229 103 FF-GFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPE-SRGVVIGLLKGLIGLSGAIMTQIYHA 180 (599)
Q Consensus 103 ~~-g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~i~~~ 180 (599)
.+ +...+.+ + ++.=.+...+.|++..+.-..--..+....|+ +-|++.|..++..++|-.+.+.+.+.
T Consensus 341 tl~~H~~l~F--t--------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~ 410 (459)
T KOG4686|consen 341 TLLGHSGLFF--T--------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF 410 (459)
T ss_pred HHHHhhhHHh--h--------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence 33 4333322 2 11223555677777766544445566777785 58999999999999999998888877
Q ss_pred hcCC
Q 047229 181 VNGD 184 (599)
Q Consensus 181 ~~~~ 184 (599)
+.+.
T Consensus 411 i~d~ 414 (459)
T KOG4686|consen 411 IADG 414 (459)
T ss_pred eecC
Confidence 7754
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=84.38 Aligned_cols=164 Identities=10% Similarity=0.035 Sum_probs=105.0
Q ss_pred hhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-----
Q 047229 353 AIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV----- 426 (599)
Q Consensus 353 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 426 (599)
...++.+++++ .|+++..++.++.+.-+...+.-++.|+++||...|.+..|.+++ .+.+.++++.+++...+
T Consensus 28 ~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il-~g~i~~~i~~~llf~~p~~s~~ 106 (460)
T PRK11462 28 VMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVL-FGALPFGIVCVLAYSTPDLSMN 106 (460)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHh-HHHHHHHHHHHHHHhCCCCCcc
Confidence 44556667766 599999999999999999999999999999998766554555544 44444454444433222
Q ss_pred --hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhC-CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCcccc
Q 047229 427 --HNSLYFASIIIGFCLGAQLSLLVTIISELFG-LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCI 503 (599)
Q Consensus 427 --~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~ 503 (599)
..+..+..+++.+++........++.+|..+ +++|++..+.-..+..+|.. +++.+...+....+....
T Consensus 107 ~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~-~~~~~~~plv~~~g~~~~------- 178 (460)
T PRK11462 107 GKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM-LSTVLMMPLVNLIGGDNK------- 178 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCch-------
Confidence 1123444555677777776677788888876 67888988888877777754 444444444333211000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 047229 504 GARCYRVAFVTISAATFFACIVS 526 (599)
Q Consensus 504 ~~~~~~~~f~~~~~~~~i~~i~~ 526 (599)
..+|.....+.+++.+++..++
T Consensus 179 -~~g~~~~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 179 -PLGFQGGIAVLSVVAFMMLAFC 200 (460)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHH
Confidence 1246666666655555544443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00073 Score=68.96 Aligned_cols=154 Identities=13% Similarity=0.030 Sum_probs=92.0
Q ss_pred HHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchH
Q 047229 327 LLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPL 406 (599)
Q Consensus 327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~ 406 (599)
++..++++-|.......+++.. -..+...+..|+...|+++...+..-+...+.++.|.++..++.+|+|..+
T Consensus 252 w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr------ 324 (432)
T PF06963_consen 252 WRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVR------ 324 (432)
T ss_pred HHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh------
Confidence 4556666655544433333332 334555667777888999999999999999999999999999999998554
Q ss_pred HHHHHHHHHHHHHH----HHHH-hhh-hhHHHHHHHHHHH-----hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhh
Q 047229 407 LLTLVILFSCIGYL----LIAF-AVH-NSLYFASIIIGFC-----LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIG 475 (599)
Q Consensus 407 ~~~~~~~~~~~~~~----~~~~-~~~-~~~~i~~~l~g~~-----~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig 475 (599)
....+......++. .+.. .++ .......++.|+. .=+.--...-+..|..|+++||+..|..+..+++.
T Consensus 325 ~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf 404 (432)
T PF06963_consen 325 AGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLF 404 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHH
Confidence 12222222221111 1111 111 1222222222322 22222344567889999999999999999888887
Q ss_pred hhHhhhhHHHHHHh
Q 047229 476 SYIFNVRVAGRLYD 489 (599)
Q Consensus 476 ~~i~~~~l~g~~~~ 489 (599)
..+ -++.+.+..
T Consensus 405 ~ll--~~~~~ii~~ 416 (432)
T PF06963_consen 405 ELL--SFVLTIIFP 416 (432)
T ss_pred HHH--HHHHHhccC
Confidence 653 234444443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.3e-06 Score=85.74 Aligned_cols=125 Identities=10% Similarity=0.143 Sum_probs=84.0
Q ss_pred hhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh---h
Q 047229 352 AAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV---H 427 (599)
Q Consensus 352 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 427 (599)
.+..+++.|+++ +|+++...+.++.+.-+...+..++.|+++||...|.+..|.+ +..+.+..+++..++...+ .
T Consensus 24 ~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~-il~g~i~~~i~~~llf~~p~~~~ 102 (473)
T PRK10429 24 IVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPW-ILIGTLANSVVLFLLFSAHLFEG 102 (473)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchh-HhhhhHHHHHHHHHHHcCCCCCc
Confidence 344556777777 5999999999999999999999999999999764333222333 4555555555544443221 1
Q ss_pred h----hHHHHHHHHHHHhhhHHHHHHHHHHHhh-CCCcccchhhhhhccchhhhh
Q 047229 428 N----SLYFASIIIGFCLGAQLSLLVTIISELF-GLKHYSTLYNVGSVSSPIGSY 477 (599)
Q Consensus 428 ~----~~~i~~~l~g~~~g~~~~~~~~~~~e~~-~~~~~g~~~g~~~~~~~ig~~ 477 (599)
. +..+..++.++++........++.+|+. ++++|....+.......+++.
T Consensus 103 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~ 157 (473)
T PRK10429 103 TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGF 157 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 2333444556666666666778889988 477888888876666666654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.4e-05 Score=74.86 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=104.6
Q ss_pred hHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh----hhhHHH
Q 047229 357 MGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV----HNSLYF 432 (599)
Q Consensus 357 ~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i 432 (599)
+|.+-+..+.+..+++.+-..+..+..++.+..|++.+|+|.|+ -+..+..+++++..++.... ...+..
T Consensus 36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~------gi~lgL~l~avg~~lF~pAa~~~~y~~FL~ 109 (422)
T COG0738 36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA------GIVLGLLLYAVGAALFWPAASSKSYGFFLV 109 (422)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH------HHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 44444556999999999999999999999999999999999886 56788888888877764322 234556
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 433 ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 433 ~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
..++.+.|.+..-+....++..+.+++....-.++......+|++ ++|.+++.+...
T Consensus 110 ~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~-~gp~~g~~lils 166 (422)
T COG0738 110 ALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAI-LGPLLGSSLILS 166 (422)
T ss_pred HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHH-HHHHHHHHHHHh
Confidence 677889999999999999999999988888888888888999976 899999988874
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.3e-05 Score=70.21 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=84.3
Q ss_pred hcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-
Q 047229 347 IGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA- 425 (599)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~- 425 (599)
.+..+.+..+-+.+-+.+|+|+.+...+.....++..+| ++.|.+.|+++.+. ++.++.+...+++.++...
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~------~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV------VLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH------HHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666668999999998888888888875 88899999997663 6677888888887664321
Q ss_pred -h-----hhh-HHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhh
Q 047229 426 -V-----HNS-LYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFN 480 (599)
Q Consensus 426 -~-----~~~-~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~ 480 (599)
. +.+ +.+..++.+.+.............+.|| ++||++.|+.-....+++.++.
T Consensus 88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t 148 (250)
T PF06813_consen 88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFT 148 (250)
T ss_pred hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHH
Confidence 1 111 2222223333333333444455668897 7899999999887788776543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00023 Score=68.95 Aligned_cols=137 Identities=14% Similarity=0.015 Sum_probs=75.8
Q ss_pred HhhhhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhhhhhhhhhhc-----ccCChHHHHHHHHHHHHHHHHHHHHH
Q 047229 39 SVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYE-----VAPPWIVLLSGSIMNFFGFFMIWLSV 113 (599)
Q Consensus 39 ~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~D-----r~G~r~~~~ig~~~~~~g~~~~~~~~ 113 (599)
+.-|..+..-...|.+.+.=|+|.++.+.++.++ .-...-+++.++.| |+||||.-++=. -..+|.++..++.
T Consensus 41 llQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay-~P~sLKllWaPiVDs~y~k~~GrrksWvvp~-q~llG~~mllLs~ 118 (510)
T KOG3574|consen 41 LLQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAY-WPFSLKLLWAPIVDSVYSKRFGRRKSWVVPC-QYLLGLFMLLLSY 118 (510)
T ss_pred HHcCCchhHhhhhHHHhcCCCcchhhhhhhhhhh-hHHHHHHHHHhhhHHHHHHhhccccceeeeh-HHHHHHHHHHHhh
Confidence 3445544433377888888888888887655443 33344668888889 999999643311 1223322222222
Q ss_pred hc--c---CCCChhHHHHHHHHHHHhccccccchhHHHHHhhcC-CCCccchhHHHHHhhhhhHHHHHHH
Q 047229 114 SH--R---FGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNF-PESRGVVIGLLKGLIGLSGAIMTQI 177 (599)
Q Consensus 114 ~~--~---~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~f-p~~rg~~~g~~~~~~~lg~~i~~~i 177 (599)
.- . .+..++...+...-++.-+..+.-..+.-.....+. |++-|-+......+...|..++..+
T Consensus 119 ~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 119 LVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred CCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 11 0 112244444433445555555544444444444455 5677888777777777766666444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.1e-05 Score=77.40 Aligned_cols=191 Identities=11% Similarity=0.011 Sum_probs=120.3
Q ss_pred HHHHHHHHHhhhcchhhhhcchHHHHHH--cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHH
Q 047229 336 MLILFTATTCSIGGALAAIDNMGQIGKA--LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVIL 413 (599)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 413 (599)
.|+..+..++.......+....-+|.++ .+-+.+..|+..+...++..++.++.|+...|.++-+ .-+..+.+
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k-----~Pli~s~i 110 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVK-----KPLIVSFL 110 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcc-----cCHHHHHH
Confidence 3444555554443333333334456666 5777788899999999999999999999999987421 23567777
Q ss_pred HHHHHHHHHHHh----h--hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHH
Q 047229 414 FSCIGYLLIAFA----V--HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRL 487 (599)
Q Consensus 414 ~~~~~~~~~~~~----~--~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~ 487 (599)
+++++.+++... + .+.+.++-++.|+|.|.. ...=.++++.--.++|.++.+....+..+|.+ +||.+...+
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i-lGp~~q~~f 188 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGII-LGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHH-HhHHHHHHH
Confidence 777777666321 1 233556667778887764 55567777766678888888777766666643 777554433
Q ss_pred HhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 488 YDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
... ++++....+. ..-+-|+.+-|+++++.++..++..+..+|.++
T Consensus 189 ~~L-g~~G~~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 189 TPL-GEKGFMILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hhh-cCCceEEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 222 2221111110 011347788888888888888877777666554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.5e-05 Score=78.40 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=113.8
Q ss_pred hhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh---
Q 047229 351 LAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV--- 426 (599)
Q Consensus 351 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 426 (599)
.....++..++++ .|+++..++.++.+.-+...+.-++.|.++||..+|++..|.+++..+..+..+..+.+..++
T Consensus 29 ~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~ 108 (467)
T COG2211 29 GIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM 108 (467)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCccc
Confidence 3355667777877 599999999999999999999999999999999877776777766666666665555544332
Q ss_pred ---hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhC-CCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccc
Q 047229 427 ---HNSLYFASIIIGFCLGAQLSLLVTIISELFG-LKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNC 502 (599)
Q Consensus 427 ---~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~ 502 (599)
....++...+.++++........++.+|+.+ +++|.+..+.-.....+|+. +...+.+.+....+....
T Consensus 109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~-l~~~~~~plv~~~g~~~~------ 181 (467)
T COG2211 109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGDK------ 181 (467)
T ss_pred CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcc------
Confidence 2245567778888888877777778888765 45777777777777777755 333444445444332210
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHH
Q 047229 503 IGARCYRVAFVTISAATFFACIVSII 528 (599)
Q Consensus 503 ~~~~~~~~~f~~~~~~~~i~~i~~~~ 528 (599)
..+|+..-.+.+++..+..+.+++
T Consensus 182 --~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 182 --ALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 135666666655554444444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00023 Score=69.38 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=97.0
Q ss_pred HHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 047229 359 QIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIG 438 (599)
Q Consensus 359 ~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 438 (599)
..++++|++..+.+.++......+.+...+.|.++||+|||+ ......++..++.+.-...+...+++.-++-|
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~------~cl~~cily~~scl~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK------ACLLFCILYSLSCLTKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 345668999999999998888999999999999999999886 33333344444444444445566778888889
Q ss_pred HHhhhHHHHHHHH-HHHh----hCCCcccchhhhhh-ccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHH
Q 047229 439 FCLGAQLSLLVTI-ISEL----FGLKHYSTLYNVGS-VSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAF 512 (599)
Q Consensus 439 ~~~g~~~~~~~~~-~~e~----~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f 512 (599)
++....++..=++ +.|+ +|++..+..++... ..+.+-++ ....++..+.|..+ .+-..+|
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI-~aGv~a~~l~~~~~-------------~g~vaPF 198 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAI-GAGVVANVLADWFG-------------FGPVAPF 198 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHH-HHhHHHHHHHHHhC-------------CCCcchH
Confidence 9888888876653 4555 33334444444333 22233222 33333334444321 1235678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 047229 513 VTISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 513 ~~~~~~~~i~~i~~~~~~~~~~ 534 (599)
.....+.+++.++......++.
T Consensus 199 ~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 199 DAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHHHHHHhcccccC
Confidence 8777777777766554444443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.9e-05 Score=71.85 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=95.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHhhh
Q 047229 365 GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-AVHNSLYFASIIIGFCLGA 443 (599)
Q Consensus 365 g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~g~~~g~ 443 (599)
|.+..+.+++......+..+|...+|.++|++|||+.. .......++..++-.. ++..++.+.-.+.|+|.|+
T Consensus 109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f------~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg 182 (528)
T KOG0253|consen 109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGF------NLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG 182 (528)
T ss_pred chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhh------hhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC
Confidence 77888888888888999999999999999999999732 2222223322222222 2345677788899999999
Q ss_pred HHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHH
Q 047229 444 QLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFAC 523 (599)
Q Consensus 444 ~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 523 (599)
.|...++-.|..|..++..-.-.. ....+|.. +...+.=.+..+ .+|++-.........+.+
T Consensus 183 -~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v-~ea~law~vm~~---------------~gwr~~l~~~~~pl~~~a 244 (528)
T KOG0253|consen 183 -LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQV-FEALLAWGVMSN---------------FGWRYLLFTSSTPLMFAA 244 (528)
T ss_pred -ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHH-HHHHHHHHHHHh---------------hhHHHHHHHHHhHHHHHH
Confidence 788888999999988887655444 55556654 443333333343 358877777666555555
Q ss_pred HHHHHHH
Q 047229 524 IVSIILV 530 (599)
Q Consensus 524 i~~~~~~ 530 (599)
....+++
T Consensus 245 ~f~~w~~ 251 (528)
T KOG0253|consen 245 RFLVWVY 251 (528)
T ss_pred HHHhhcc
Confidence 5554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=76.11 Aligned_cols=163 Identities=18% Similarity=0.101 Sum_probs=102.8
Q ss_pred HHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH-HHHH
Q 047229 342 ATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFS-CIGY 419 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~ 419 (599)
.++..... ......+++++++ +|.++.+.+...++..+...+ .+++|.++||++.. +.+|++.+.++.++. .+++
T Consensus 34 ~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~-G~rRr~~l~~~~~l~~~~~~ 110 (468)
T TIGR00788 34 VLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLF-GYTKRWYLVLSGLLGSAILY 110 (468)
T ss_pred HHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCC-CccchHHHHHHHHHHHHHHH
Confidence 34433333 4444455666664 799999998888888888888 55599999999521 223445555555554 2333
Q ss_pred HHHHHhhh-h-hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhh---ccchhhhhHhhhhHHHHHHhhhhhh
Q 047229 420 LLIAFAVH-N-SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGS---VSSPIGSYIFNVRVAGRLYDREALK 494 (599)
Q Consensus 420 ~~~~~~~~-~-~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~---~~~~ig~~i~~~~l~g~~~~~~~~~ 494 (599)
..+...+. . ...+..++.+++.+..-...-.+..|..+ +.++...+... ....+|.. +++.+.|.+.+.
T Consensus 111 ~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~-vg~~l~G~l~~~---- 184 (468)
T TIGR00788 111 GLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGL-ISSLLGGPLLDK---- 184 (468)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHH-HHHHHHHHHHHh----
Confidence 33322221 1 22235566778877777777888999887 55444333333 33346754 888889988887
Q ss_pred cCCCCccccCcchHHHHHHHHHHHHHHHHH
Q 047229 495 QGKGGLNCIGARCYRVAFVTISAATFFACI 524 (599)
Q Consensus 495 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i 524 (599)
.+|+..|++.+++.++..+
T Consensus 185 -----------~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 185 -----------TLTRILFLITAALLLLQLF 203 (468)
T ss_pred -----------cCcchHHHHHHHHHHHHHH
Confidence 3588889888877766633
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0063 Score=62.99 Aligned_cols=147 Identities=7% Similarity=-0.015 Sum_probs=86.7
Q ss_pred HHHHHHHhhhhHHHHHhhHHHHHhHhCC-----CHHHHHHHHHHHHhHh-hh-hhhhhhhhcccCChHHHHHHHHHHHHH
Q 047229 33 ATLLIMSVNGSSYMFALYSNDIKSSLGY-----DQTTLNLVSFFKDLGG-NL-GVLAGLTYEVAPPWIVLLSGSIMNFFG 105 (599)
Q Consensus 33 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~-----s~~~~~~~~~~~~~~~-~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g 105 (599)
...+.+++....|.. .-+++|.+.+ ..+.+.++-+...+.+ +. .++.+++.+|++|++++-+-...+..-
T Consensus 11 ~~~l~fF~il~~Y~i---LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~ 87 (472)
T TIGR00769 11 PLFLMFFCILFNYTI---LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGF 87 (472)
T ss_pred HHHHHHHHHHHHHHH---HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHH
Confidence 333444444444332 3457787766 3467888766665554 33 789999999999999988877666665
Q ss_pred HHHHHHHHhccCC-CCh----------------------hHHHHHHHHHHHhccccccch-hHHHHHhhcCC-CCccchh
Q 047229 106 FFMIWLSVSHRFG-AKP----------------------HVWQMCLYMLIGANSQSFPNT-GALVTCVKNFP-ESRGVVI 160 (599)
Q Consensus 106 ~~~~~~~~~~~~~-~~~----------------------~~~~l~~~r~l~G~g~g~~~~-~~~~~~~~~fp-~~rg~~~ 160 (599)
.+++++.+-.... .++ +.|...++-+...+-...... .--..++|.+. ++-.|..
T Consensus 88 f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy 167 (472)
T TIGR00769 88 FALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFY 167 (472)
T ss_pred HHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5555544221110 000 012222222233322222222 34456778885 5667888
Q ss_pred HHHHHhhhhhHHHHHHHHHHhc
Q 047229 161 GLLKGLIGLSGAIMTQIYHAVN 182 (599)
Q Consensus 161 g~~~~~~~lg~~i~~~i~~~~~ 182 (599)
++...+.++|.++++.+...+.
T Consensus 168 ~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 168 ALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888898888887766654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.2e-05 Score=80.01 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=113.1
Q ss_pred hhhcchHHHHH-HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhh-hhhccCCchHHHHHHHHHHHHHHHHHHHhh---
Q 047229 352 AAIDNMGQIGK-ALGYPTHSIASFISLISIWNFLGRIVAGFASEIF-LAKYKVPRPLLLTLVILFSCIGYLLIAFAV--- 426 (599)
Q Consensus 352 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 426 (599)
++...+..|+. .+|++...+..+...+....-+..+++|+++|++ |+++ .+.++.++..++.+++....
T Consensus 5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~------tIl~~~ii~~lG~~llai~a~~~ 78 (654)
T TIGR00926 5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK------TILYLSIVYVVGHALLSFGAIPS 78 (654)
T ss_pred ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHhccCcc
Confidence 33444444544 3689888888888888888888899999999966 4443 56666777777776655431
Q ss_pred ------hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCC---cccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCC
Q 047229 427 ------HNSLYFASIIIGFCLGAQLSLLVTIISELFGLK---HYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGK 497 (599)
Q Consensus 427 ------~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~---~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~ 497 (599)
....++++.++.+|.|+.-+...+...|.++++ .+-..+.+.+.+.++|+. +++++.+.+.+...
T Consensus 79 ~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~----- 152 (654)
T TIGR00926 79 SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVG----- 152 (654)
T ss_pred cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-----
Confidence 112456677788899998899999999998754 355677777888899976 77777777764421
Q ss_pred CCccccC-cchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 498 GGLNCIG-ARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 498 ~~~~~~~-~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
|.| ..+|..+|.+.+++++++.++....
T Consensus 153 ----~fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 153 ----CFGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred ----ccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1358889998888877776665443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.016 Score=61.86 Aligned_cols=140 Identities=12% Similarity=0.050 Sum_probs=92.3
Q ss_pred HhhHHHHHhHhCCCHHHHHH-HHHHHHhHhhhhhhhhhhhccc-CChHHHHHHHHHHHHHHHHHHHHHhccC--------
Q 047229 48 ALYSNDIKSSLGYDQTTLNL-VSFFKDLGGNLGVLAGLTYEVA-PPWIVLLSGSIMNFFGFFMIWLSVSHRF-------- 117 (599)
Q Consensus 48 ~~~~~~l~~~~~~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr~-G~r~~~~ig~~~~~~g~~~~~~~~~~~~-------- 117 (599)
+.+..++.+++|.+.....- ++.+........+..++++|-| ||-+++.++.++..+|..++.+......
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 56677888999988866665 5555555555678999999998 9999999999999998655443322110
Q ss_pred --C----CChh---HHHHHHHHHHHhccccccchhHHHHHhhcCCC----C-c--cchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 118 --G----AKPH---VWQMCLYMLIGANSQSFPNTGALVTCVKNFPE----S-R--GVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 118 --~----~~~~---~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~----~-r--g~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
. ..++ ...+....-+..+|.|..-+.....-.|-|++ + + ...+.++......|..+...+....
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 0011 23455566677889999888888888888861 1 2 3555666666666666665554444
Q ss_pred cCCChH
Q 047229 182 NGDNTK 187 (599)
Q Consensus 182 ~~~~~~ 187 (599)
-++..|
T Consensus 218 q~~~~w 223 (571)
T KOG1237|consen 218 QDNVGW 223 (571)
T ss_pred hhcccc
Confidence 333333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0006 Score=67.66 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=91.2
Q ss_pred HHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-----hh-------hh-
Q 047229 362 KALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-----AV-------HN- 428 (599)
Q Consensus 362 ~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~- 428 (599)
.|++.+..-.+.++++..+.+. .|+..|+.+|+.+.-.+.+|...+..+.+....+..+..+ .. +.
T Consensus 8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 4577777777777777766665 4999999999976233344445555565555554433221 11 11
Q ss_pred ----hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 429 ----SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 429 ----~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
...+.+.++|++.+...+...+++.|..|+++|+.+.++.+....+|. +++..+.|.+.|.+
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~-iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGI-IVSAIVFGRLLDPF 152 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHcccc
Confidence 133456677899999889999999999999999999999998877774 47888888887763
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=54.06 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=61.5
Q ss_pred hh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 047229 42 GS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLS 112 (599)
Q Consensus 42 g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~ 112 (599)
|. .+.|.++.|.+.+|.++|.++.+|+.+...+|++. .+...++.++..+++.+..+.+...+..+.+++.
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 78899999999999999999999999999999988 6688888888888899999888888876655443
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00034 Score=60.56 Aligned_cols=105 Identities=10% Similarity=-0.017 Sum_probs=80.1
Q ss_pred HHHHHHhHhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHH
Q 047229 68 VSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVT 147 (599)
Q Consensus 68 ~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~ 147 (599)
....+....+..++.+.+.+++|+|+.+++|.+...+-.... .. ++.+.++...++.|+|.+..+++...+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~------~~---~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF------FY---PNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH------Hh---hhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 344444445557778889999999999999998776542221 12 667788899999999999999999899
Q ss_pred HhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 148 CVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 148 ~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
+.++.. ++|++-.++..+....+.++++.+....
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999886 5699999999888887777776554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0007 Score=67.57 Aligned_cols=130 Identities=9% Similarity=0.018 Sum_probs=80.9
Q ss_pred hhHHHHHhHhCCCHHHHHHH-HHHHHhHhhhhhhhhhhhcc----cCChHHHHHH-HHHHHHHHHHHHHHH--hccCCCC
Q 047229 49 LYSNDIKSSLGYDQTTLNLV-SFFKDLGGNLGVLAGLTYEV----APPWIVLLSG-SIMNFFGFFMIWLSV--SHRFGAK 120 (599)
Q Consensus 49 ~~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr----~G~r~~~~ig-~~~~~~g~~~~~~~~--~~~~~~~ 120 (599)
.+.+++..++|++....+.+ ......|.+++|+.|..+|| |||||-++.. ..+..++.+++..+. ....+..
T Consensus 53 sy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~ 132 (498)
T KOG0637|consen 53 SYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN 132 (498)
T ss_pred ccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence 45677888899999988885 44445555679999999997 7888765544 334444444332221 0000011
Q ss_pred h-------hHHHHHHHHHHHhccccccchhHHHHHhhcC-CCCccc-hhHHHHHhhhhhHHHHHHHH
Q 047229 121 P-------HVWQMCLYMLIGANSQSFPNTGALVTCVKNF-PESRGV-VIGLLKGLIGLSGAIMTQIY 178 (599)
Q Consensus 121 ~-------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~f-p~~rg~-~~g~~~~~~~lg~~i~~~i~ 178 (599)
+ ....++++--+.=++.-.+..++-.++.|.. ++++-+ +.+....+.++|+.++-.++
T Consensus 133 ~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 133 ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 1 1223334444445566667778888899988 443333 88888888888887774443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00031 Score=68.97 Aligned_cols=126 Identities=19% Similarity=0.136 Sum_probs=91.7
Q ss_pred HHhhHHHHHhHhCCCH--HHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhH
Q 047229 47 FALYSNDIKSSLGYDQ--TTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHV 123 (599)
Q Consensus 47 ~~~~~~~l~~~~~~s~--~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~ 123 (599)
.....+.+..+++.+. .+.++......+.... .++.|.+.||+|||+.+..+.....++.+...+. ...+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 94 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA------PNVGL 94 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC------ccchH
Confidence 3445566677776666 4777766666666655 6899999999999988888877645553333222 11358
Q ss_pred HHHHHHHHHHhccccccchhHHHHHhhcCCC--CccchhHHHHH-hhhhhHHHHHHHH
Q 047229 124 WQMCLYMLIGANSQSFPNTGALVTCVKNFPE--SRGVVIGLLKG-LIGLSGAIMTQIY 178 (599)
Q Consensus 124 ~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~--~rg~~~g~~~~-~~~lg~~i~~~i~ 178 (599)
+.+++.|+++|++.+...+....++.+++|+ +|+...+.... ...+|..+++.+.
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLA 152 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999986 68888888777 4556666665343
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0071 Score=61.42 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=38.9
Q ss_pred HHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhh
Q 047229 438 GFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491 (599)
Q Consensus 438 g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~ 491 (599)
.+.....+....++-+.+..|..-|+-+.+.|+..++|+. --..+.=++.|..
T Consensus 416 sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt-WP~~~vL~lVD~f 468 (544)
T PF13000_consen 416 SFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT-WPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC-chHHHHHHHhhhc
Confidence 4455555666777778888899999999999999999986 4444444555654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00024 Score=53.39 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=50.2
Q ss_pred HHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 047229 342 ATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKY 400 (599)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~ 400 (599)
.+++..+....+..+++.++++.|+|+.+.+.+.++..+...++.+++|+++||.++++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 34444445555777888999999999999999999999999999999999999998775
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0006 Score=65.36 Aligned_cols=140 Identities=9% Similarity=0.074 Sum_probs=80.4
Q ss_pred HHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcch----hhhHHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 047229 327 LLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSI----ASFISLISIWNFLGRIVAGFASEIFLAKYKV 402 (599)
Q Consensus 327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~ 402 (599)
+.+..+||.....-+...+...+.+-..++.....++.. +..+ |..=.+..+.+.++.++.|++--.+.|.
T Consensus 227 l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~--~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~--- 301 (433)
T KOG3810|consen 227 LQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA--PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW--- 301 (433)
T ss_pred HHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC--CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh---
Confidence 345566776544444444443444444454444444442 2222 2222445566667777777775544332
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccc
Q 047229 403 PRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSS 472 (599)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~ 472 (599)
+..++.++.+..+..++++.... .+..++..+++..-+....++...-+++....+..|-.+|+..+..
T Consensus 302 -g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvA 371 (433)
T KOG3810|consen 302 -GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVA 371 (433)
T ss_pred -hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHH
Confidence 22345555544444444444433 4456777888887788877777777888888888899888876543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00087 Score=50.33 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=46.3
Q ss_pred hhHHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHH
Q 047229 42 GSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 42 g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
+....+-++.|...++.|+|+.+++.+.....+..++ .+++|.++||+++++.++.+..++
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3333444556666778999999999976666666655 889999999999999988765543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.042 Score=56.80 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHh
Q 047229 372 ASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF----------AVHNSLYFASIIIGFCL 441 (599)
Q Consensus 372 ~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~l~g~~~ 441 (599)
......+.++..+||.+..+.. +-.+|. ...+...+.=++.+..+++... .+.+..++..+++|+..
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~--~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDS--RWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCc--cchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 3456778899999999765431 111111 0111111111112222222111 12344567788889999
Q ss_pred hhHHHHHHHHHHHhhCCCcccchhhhhhccchhh
Q 047229 442 GAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIG 475 (599)
Q Consensus 442 g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig 475 (599)
|-..+....+.++..+++++..+..++...-.+|
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~G 420 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVG 420 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888777776666665555555
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0026 Score=65.90 Aligned_cols=131 Identities=13% Similarity=0.191 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--HhhhHHHHHHHHHHHhh
Q 047229 379 SIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGF--CLGAQLSLLVTIISELF 456 (599)
Q Consensus 379 ~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~--~~g~~~~~~~~~~~e~~ 456 (599)
++..++..+..|.++||+|||. .+........+..+...... ++.++ +.++ +.+..++...+++++..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~------~L~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKV------VLLLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhh------hHHHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeecc
Confidence 6788899999999999999985 33443333333333333322 23222 3332 34555677788999999
Q ss_pred CCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 457 GLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 457 ~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
..+.|...+|+.+.....+.. ++|.+.+.+... .++...|.+..+..++..+...+..+++..
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~-~~p~~~~~~~~~---------------~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLV-IGPALGGYLVKF---------------LGIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHh---------------cCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 999999999999987777755 788888888877 358889999988888888888877777654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=67.61 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=95.7
Q ss_pred HhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 047229 55 KSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIG 133 (599)
Q Consensus 55 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 133 (599)
.+|++-...-.|.++.....+-+. -++++++..|+|+-+++.+++..+.+=.+..... .|.|+.+-.-+++
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--------~n~W~vLPieilq 469 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--------QNPWMVLPIEILQ 469 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--------cCchheeeHHHHH
Confidence 467776777777666666666666 6699999999999999999988877764433222 7889999999999
Q ss_pred hccccccchhHHHHHhhcCCCC-ccchhHHHHH-hhhhhHHHHHHHHHHhcCCCh
Q 047229 134 ANSQSFPNTGALVTCVKNFPES-RGVVIGLLKG-LIGLSGAIMTQIYHAVNGDNT 186 (599)
Q Consensus 134 G~g~g~~~~~~~~~~~~~fp~~-rg~~~g~~~~-~~~lg~~i~~~i~~~~~~~~~ 186 (599)
|+..++++.+..++++...|.+ |..+.+++.. ..|+|-.+++.+++.+....+
T Consensus 470 git~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg 524 (618)
T KOG3762|consen 470 GITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG 524 (618)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence 9999999999999999999754 8889888754 446666666666666665433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0086 Score=51.89 Aligned_cols=103 Identities=13% Similarity=-0.022 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHH
Q 047229 372 ASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTI 451 (599)
Q Consensus 372 ~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~g~~~~~~~~~ 451 (599)
-...++......++.++.+.+.+++|.|. .+.++.+..++-.......+.+.++....+.|++.+..+.....+
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~------sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKW------SMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 33456777778888888999999998774 667776666655444445556677888999999999999999999
Q ss_pred HHHhhCCCcccchhhhhhccchhhhhHhhh
Q 047229 452 ISELFGLKHYSTLYNVGSVSSPIGSYIFNV 481 (599)
Q Consensus 452 ~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~ 481 (599)
+.+...++.+++..|+.......+.+ +|.
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i-~G~ 142 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLI-FGN 142 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHH-HHH
Confidence 99999888999988888776666543 444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.2 Score=52.32 Aligned_cols=75 Identities=12% Similarity=-0.012 Sum_probs=44.4
Q ss_pred HHHHHhhhhHHHHHhhHHHHHhHhC---CCHHHHHHHHHHHHhH--hhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHH
Q 047229 35 LLIMSVNGSSYMFALYSNDIKSSLG---YDQTTLNLVSFFKDLG--GNLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMI 109 (599)
Q Consensus 35 ~~~~~~~g~~~~~~~~~~~l~~~~~---~s~~~~~~~~~~~~~~--~~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~ 109 (599)
.+++++....|.. .-+++|.+= ..++.+..+=....+. .++..+..++.+++++.+++-+....+..-..++
T Consensus 30 ~~m~f~i~f~y~~---lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f 106 (491)
T PF03219_consen 30 ALMFFFILFNYTI---LRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALF 106 (491)
T ss_pred HHHHHHHHHHHHH---HHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3444455555443 233444432 2555666654433332 3447789999999999999887766666555555
Q ss_pred HHH
Q 047229 110 WLS 112 (599)
Q Consensus 110 ~~~ 112 (599)
++.
T Consensus 107 ~~v 109 (491)
T PF03219_consen 107 AFV 109 (491)
T ss_pred HHH
Confidence 443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0077 Score=62.53 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred HHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHH
Q 047229 360 IGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-----HNSLYFAS 434 (599)
Q Consensus 360 ~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~ 434 (599)
+..++|.++.+.+.+.++..+...+ .++.|.++|-+--+ +.+|++.+.++.++..++...+...+ .....+..
T Consensus 16 l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~-G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 93 (433)
T PF03092_consen 16 LKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIF-GYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLL 93 (433)
T ss_pred HHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhccccccc-CCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence 3345799998888877776665554 88899999987311 22344556666666654444333221 22334445
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhCCC--cccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHH
Q 047229 435 IIIGFCLGAQLSLLVTIISELFGLK--HYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAF 512 (599)
Q Consensus 435 ~l~g~~~g~~~~~~~~~~~e~~~~~--~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f 512 (599)
++..++....-...=+...|....+ .+|...+.......+|++ ++..+.|.+.+. .+++..|
T Consensus 94 ~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~l-v~~~l~G~l~~~---------------~~~~~~f 157 (433)
T PF03092_consen 94 FLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSL-VGSLLSGPLLDS---------------FGPQGVF 157 (433)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHH-HHHHhhhhhhhc---------------CCCeEEe
Confidence 5556666666666667777776332 356666677777778875 777788888777 3467777
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 047229 513 VTISAATFFACIVSIILVLR 532 (599)
Q Consensus 513 ~~~~~~~~i~~i~~~~~~~~ 532 (599)
.+.+.+.++..+..+++.++
T Consensus 158 ~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 158 LISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hHHHHHHHHHHHHHHHhhhh
Confidence 77777767666666666555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00011 Score=77.79 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=2.6
Q ss_pred hHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh----------
Q 047229 357 MGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV---------- 426 (599)
Q Consensus 357 ~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 426 (599)
++++-+..+++..+++.+.+..-++..+..++..++.+|- + |...+..+.++++++.+++..++
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-h-----rprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-H-----RPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-----CcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence 4444445699999999999999999999999888887773 3 33456777777777766543210
Q ss_pred --------------h---------------------------hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchh
Q 047229 427 --------------H---------------------------NSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLY 465 (599)
Q Consensus 427 --------------~---------------------------~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~ 465 (599)
- ..++++.++.|+|....++...+|+-|..++++.+...
T Consensus 100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi 179 (539)
T PF03137_consen 100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI 179 (539)
T ss_dssp ----------------------------------------------------SSS-------------------------
T ss_pred ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence 0 01334556778888888999999999999999999999
Q ss_pred hhhhccchhhhhHhhhhHHHHHHhhhhhhcC---------CCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 466 NVGSVSSPIGSYIFNVRVAGRLYDREALKQG---------KGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 466 g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
|+......+|.. +|-.+++...+.+.+... ..++...| .|-..|.+.+.+.++..+..+.+.++-++
T Consensus 180 Gi~~~~~~lGPa-~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvG--AWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 180 GILYAMSILGPA-LGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVG--AWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hhhhHHhhccHH-HHHHHHHHHHhceeCCccccccCCCCCCCCccHHH--HHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 999888888875 666666655543322111 11222222 46667777777777666666666554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.042 Score=55.25 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=76.6
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-hh---hhHH-----HHH
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-VH---NSLY-----FAS 434 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~-----i~~ 434 (599)
+| +...+-+...++.+..+.-.+.+-|+.||+|-|. .+.++..+.+++..+=... .+ ..+. .+.
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~------a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq 147 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRT------ALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQ 147 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHH------HHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhH
Confidence 36 4455566778888888888999999999998664 6677778888776652221 11 1122 333
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 435 IIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 435 ~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
.+.+...-.....-+-+..-.||+++|+++..+..++..+|.. ++..+...+..+
T Consensus 148 ~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGva-vg~llppilV~~ 202 (480)
T KOG2563|consen 148 SIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVA-VGFLLPPILVPS 202 (480)
T ss_pred HHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHH-HHhhccceecCC
Confidence 3334433333333234555568999999999999888888865 555555555444
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.071 Score=56.55 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=63.8
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH-HHHHHHHHHH-HHhh---h--hhHHHHHHH
Q 047229 364 LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI-LFSCIGYLLI-AFAV---H--NSLYFASII 436 (599)
Q Consensus 364 ~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~-~~~~~~~~~~-~~~~---~--~~~~i~~~l 436 (599)
+|.+....+.+++.+..+..+|..+++++.++..++. ....+.. ++..++..++ .... . ...+...++
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-----~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-----VAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777788888888999999988887764433221 1111111 1111111111 1111 1 112334455
Q ss_pred HHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHh
Q 047229 437 IGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489 (599)
Q Consensus 437 ~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~ 489 (599)
.++..|+.+|...-+..+.. .++.|...|-.+....+|++ +|..+.+++.-
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~-~G~l~~~~vLl 170 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGAL-VGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHH-HHHHHHHHHHH
Confidence 67888888777666555432 12345555666666666654 66666666543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.071 Score=51.95 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=82.6
Q ss_pred chHHHHHHcCCCC--cchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-h--hhhH
Q 047229 356 NMGQIGKALGYPT--HSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-V--HNSL 430 (599)
Q Consensus 356 ~~~~~~~~~g~~~--~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~ 430 (599)
..+.+..+.+.+. ...+...+...+...++.++.|.+.||.|||+ .+..+......+.++.... + ...+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK------VLIIGLLLFLLGTLLLALAPNVGLALL 97 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH------HHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3444555555444 35777888888889999999999999997763 2333332222222222222 2 2334
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhCC-Ccccchhhhhhc-cchhhhhHhhhhHHHHHHhh
Q 047229 431 YFASIIIGFCLGAQLSLLVTIISELFGL-KHYSTLYNVGSV-SSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 431 ~i~~~l~g~~~g~~~~~~~~~~~e~~~~-~~~g~~~g~~~~-~~~ig~~i~~~~l~g~~~~~ 490 (599)
.+.....|++.+...+....+..|.+|. ++++...+.... ...++.. ++|.+.+.+.+.
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 158 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLA-LGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4455557888888889999999999987 577887777776 3555543 677666666555
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.11 Score=52.40 Aligned_cols=160 Identities=11% Similarity=0.126 Sum_probs=99.4
Q ss_pred cchHHHHHH--cCCCCcchhhh-HHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhH
Q 047229 355 DNMGQIGKA--LGYPTHSIASF-ISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSL 430 (599)
Q Consensus 355 ~~~~~~~~~--~g~~~~~~~~~-~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 430 (599)
.++.+|+.+ .|++..+...- .-+..=..+..-+....+.|.++.|. ++.+..+..++...++...+ ...+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp------viil~~~~~i~t~~lll~~~sv~~m 97 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP------VIILQALSYIITWLLLLFGTSVLAM 97 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHCcHHHH
Confidence 344555543 57877666543 33333445556677888999998774 55555555555555544443 4455
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHH
Q 047229 431 YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRV 510 (599)
Q Consensus 431 ~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (599)
-+.-++.|+.... -...++++-...++++.-.+.+....+..+|-. ++..++-.+.... ..+|..
T Consensus 98 q~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~-~s~~lgQllvs~~-------------~~sy~~ 162 (412)
T PF01770_consen 98 QLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRF-ISSLLGQLLVSFG-------------GVSYFQ 162 (412)
T ss_pred HHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-------------CCCHHH
Confidence 6666777776665 345566776677888888888877766666643 4443333333321 246888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 511 AFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 511 ~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
..++..+...++.++.+++.+.++.
T Consensus 163 L~~isl~~~~~a~~~~~fLP~~~~S 187 (412)
T PF01770_consen 163 LNYISLASVSLALLIALFLPMPKRS 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 8888777777778877777665543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.065 Score=54.58 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-CChhHHHHHHHHHHHhccccccchhHHHHHhhcCCCC----ccchhHHHHHhh
Q 047229 93 IVLLSGSIMNFFGFFMIWLSVSHRFG-AKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPES----RGVVIGLLKGLI 167 (599)
Q Consensus 93 ~~~~ig~~~~~~g~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp~~----rg~~~g~~~~~~ 167 (599)
|++++|.++..+|.+++.++...... ...+.+.++++.++.++|.|..=|.......|-++++ |.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 67889999999998886555433220 1123456788889999999999999999999999532 456666777888
Q ss_pred hhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh
Q 047229 168 GLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFI 205 (599)
Q Consensus 168 ~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (599)
++|+.++..+...+-++..+.+.+.+..+..+++++.+
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 88888877666666655556665555555544444443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.5 Score=47.45 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=50.3
Q ss_pred hHHH-HHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----------HhhhhhHHHHHHHHHHHhh
Q 047229 374 FISL-ISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIA----------FAVHNSLYFASIIIGFCLG 442 (599)
Q Consensus 374 ~~~~-~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~l~g~~~g 442 (599)
.... +.+...+|++...++.++- +|+ + .+..++=.+..-++. ..+..+..+...++|+..|
T Consensus 287 ~~~l~fN~~d~vG~~~a~~~~~~~-~r~------l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG 358 (406)
T KOG1479|consen 287 LVFLSFNVFDLIGSILAALLTWPD-PRK------L-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG 358 (406)
T ss_pred HHHHHhHHHHHhhhhhhhcccCCC-Cce------e-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence 3444 7788889988877766553 222 1 111111111111111 2234567777888899888
Q ss_pred hHHHHHHHHHHHhhCCCcccchhhhh
Q 047229 443 AQLSLLVTIISELFGLKHYSTLYNVG 468 (599)
Q Consensus 443 ~~~~~~~~~~~e~~~~~~~g~~~g~~ 468 (599)
=..+....++++..+++.+-.+-.+.
T Consensus 359 Yltsl~m~~aPk~v~~~e~e~aG~~m 384 (406)
T KOG1479|consen 359 YLTSLIMMYAPKQVKPSEKEAAGNLM 384 (406)
T ss_pred hHhhheehhcCCCCChHHHHHHHHHH
Confidence 88888888888888766554443333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0081 Score=64.49 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=116.8
Q ss_pred HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh----------------
Q 047229 363 ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV---------------- 426 (599)
Q Consensus 363 ~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 426 (599)
..+++..+.+.+.+.+-+++.+......+...|.. |..++..+.++++++.++...++
T Consensus 126 RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~H------rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~ 199 (735)
T KOG3626|consen 126 RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGH------RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS 199 (735)
T ss_pred hcCCCCCcceeEeeecccchhhhhHhHHHhccccC------ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence 35889999999999999999998888888777753 33355666677766665543210
Q ss_pred ---h--------------------------------h--hHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhh
Q 047229 427 ---H--------------------------------N--SLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGS 469 (599)
Q Consensus 427 ---~--------------------------------~--~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~ 469 (599)
+ . .++++.++.|+|....++...+|+-|...+++.+...|+.+
T Consensus 200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~ 279 (735)
T KOG3626|consen 200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY 279 (735)
T ss_pred ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence 0 0 12334566688888888888999999999999999999999
Q ss_pred ccchhhhhHhhhhHHHHHHhhhhhh-c-----CCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 470 VSSPIGSYIFNVRVAGRLYDREALK-Q-----GKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 470 ~~~~ig~~i~~~~l~g~~~~~~~~~-~-----~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
....+|.+ +|-.+++.....+.+. . ...++...| .|...|.+.+.+.++..+..+++.++.++
T Consensus 280 ~~~~lGPa-iGfllgS~~l~lYvD~~~~~~~it~~DPrWIG--AWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 280 SMAILGPA-IGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG--AWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHhhhH-HHHHHHHHHHHeeeccccCCCCCCCCCcchhh--HHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 88888876 7777777666555443 1 112444443 57888889998888888877777655543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.055 Score=55.15 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh---h-------hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCC---cccchhhhhhccch
Q 047229 407 LLTLVILFSCIGYLLIAFAV---H-------NSLYFASIIIGFCLGAQLSLLVTIISELFGLK---HYSTLYNVGSVSSP 473 (599)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~---~-------~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~---~~g~~~g~~~~~~~ 473 (599)
.+.++.++.+++.+++.... . ..+++++.++++|.|+.=+...++.+|.++++ ++...+...+.+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 45677777777777643221 1 35788889999999999999999999999866 34555666778899
Q ss_pred hhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 474 IGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 474 ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
+|+. +++.+.+.+.++ .+|...|.+..+..+++.+..+.-
T Consensus 83 ~G~~-~~~~~~~~i~~~---------------~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 83 IGSL-FSPTLVPYIQQN---------------YGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHH-HHHHCCCHHHHC---------------S-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhH-hhcccchhhccc---------------cchhhhhhHHHHHHHHHHHHHHhC
Confidence 9976 777777777766 469999999888877776654443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.0048 Score=60.93 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=3.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHH--HHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHHH
Q 047229 374 FISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTL--VILFSCIGYLLI-----------AFAVHNSLYFASIIIGFC 440 (599)
Q Consensus 374 ~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~--~~~~~~~~~~~~-----------~~~~~~~~~i~~~l~g~~ 440 (599)
.+..+.++..+||.+.++..-+ +++ ++++... .=++.+..+++. ...+.+..++..+++|+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~-~~~----~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~T 261 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWP-GPS----PRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFT 261 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEec-ccc----cccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHc
Confidence 4567889999999998874211 111 1111111 101111111111 112234456677888999
Q ss_pred hhhHHHHHHHHHHHhhCCCcccchhhhhhccchhh
Q 047229 441 LGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIG 475 (599)
Q Consensus 441 ~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig 475 (599)
.|-..+....+.++..+++.+..+..+..+.-.+|
T Consensus 262 NGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~G 296 (309)
T PF01733_consen 262 NGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFG 296 (309)
T ss_dssp -----HHHH--------------------------
T ss_pred cchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99888888888999988777777666655544444
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.042 Score=55.30 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=87.0
Q ss_pred hhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh---
Q 047229 350 ALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV--- 426 (599)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 426 (599)
...-..+.++|.+++|.+....+.+....-+.+++-+++.|..+||...|.+.+|. .+..+.....+++.++....
T Consensus 48 wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-fI~~~s~~i~~~l~Lig~aaDig 126 (498)
T KOG0637|consen 48 WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-FILAGSLLIAVSLFLIGYAADIG 126 (498)
T ss_pred HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccc-hHHHhhHHHHHHHhhhhhHhhhh
Confidence 33345678899999999988888888778888999999999999987655543333 44555555555555544321
Q ss_pred ------h-h---hHHHH-----HHHHHHHhhhHHHHHHHHHHHhhCCCcccc-hhhhhhccchhhhhHhhh
Q 047229 427 ------H-N---SLYFA-----SIIIGFCLGAQLSLLVTIISELFGLKHYST-LYNVGSVSSPIGSYIFNV 481 (599)
Q Consensus 427 ------~-~---~~~i~-----~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~-~~g~~~~~~~ig~~i~~~ 481 (599)
. . ...+. ..+.=+.........=++..|+...+++-+ +++...+..++|+. +|-
T Consensus 127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv-LGY 196 (498)
T KOG0637|consen 127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV-LGY 196 (498)
T ss_pred HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce-eee
Confidence 0 0 12222 333334455556666788899887777666 88888777788865 554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=2 Score=45.77 Aligned_cols=147 Identities=10% Similarity=0.007 Sum_probs=74.9
Q ss_pred HHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHH---HHHHHHHHhccCCCChhHHHHHHH
Q 047229 54 IKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFG---FFMIWLSVSHRFGAKPHVWQMCLY 129 (599)
Q Consensus 54 l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g---~~~~~~~~~~~~~~~~~~~~l~~~ 129 (599)
+...+|-+..+.+.+.+.++.+..+ +.+++++.++.-++ -..+-..+..++ ..++.... ... ......++..
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~-~~~--~~~~~~~~~~ 116 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAF-AFQ--GLSRLLLYVL 116 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3445777777777766666677655 66777765332222 221211111111 11111110 000 0111222334
Q ss_pred HHHHhccccccchhHHHHHhhcCCCCccchhHHHHHhhhhhHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHh
Q 047229 130 MLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQIYHAVNGD--NTKALILLLACLPTIVPIVF 204 (599)
Q Consensus 130 r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 204 (599)
.++.++-.|+..|....+..+...++-|...|-+.....+|+++++.+.+.++-. +...-.+..+.+..+++++.
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666666554333456677777777888888888887765532 22333444444444444433
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.4 Score=41.30 Aligned_cols=21 Identities=0% Similarity=-0.214 Sum_probs=16.4
Q ss_pred hhHHHhhcchhHHHHHHHHHh
Q 047229 325 YALLQAIFSIDMLILFTATTC 345 (599)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~~~ 345 (599)
.+..+.+|++..|...+.+..
T Consensus 85 ~s~~~~LK~K~tw~w~~~Yg~ 105 (267)
T PF07672_consen 85 PSYKSILKEKETWKWILIYGI 105 (267)
T ss_pred chHHHHHccchHHHHHHHHHH
Confidence 567899999999877766654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.15 E-value=1 Score=46.98 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=39.7
Q ss_pred HHHhhhHHH-HHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHh
Q 047229 438 GFCLGAQLS-LLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489 (599)
Q Consensus 438 g~~~g~~~~-~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~ 489 (599)
.+......+ ....++.|.+..++..+-+++...++++|.+ +++.+...+.+
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i-~sg~~~~~~~~ 190 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALI-FSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344444455 6778999999999999999999999999976 77777666554
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.12 Score=39.26 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=52.6
Q ss_pred hhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh
Q 047229 352 AAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV 426 (599)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (599)
.+...+|.+.++.++|..+++++.+...++..+|.+...++.++..++ ..+..+.+...+....+...+
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR------RLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 355678888888999999999999999999999999999887774333 255666666666665555443
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.8 Score=41.60 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 047229 378 ISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELF 456 (599)
Q Consensus 378 ~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~ 456 (599)
-.+-.++..++..++.+|+.-+ .+ ...+.+++++++++....+ ...-.++.++.++..|..=.....+.. .+
T Consensus 68 di~P~l~~Kl~aP~fi~~v~y~----~R--i~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRVPYW----IR--ILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred HHHHHHHHHHHhHhhhhhccch----HH--HHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 3456677778888888877422 11 2444556666766665533 334456667777777766555555544 55
Q ss_pred CCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047229 457 GLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILV 530 (599)
Q Consensus 457 ~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 530 (599)
++. ..+-...+...++. +|+...-.+.+. ..+.+.++.+...+.++-.+..+++.
T Consensus 141 ~~~----~l~~wssGTG~aGl-~Ga~~y~~lT~~--------------g~s~~~tll~~~~lp~~~~~~~f~~L 195 (402)
T PF02487_consen 141 GKS----SLSAWSSGTGGAGL-VGALYYLGLTTL--------------GLSPRTTLLIMLVLPAIFLLSYFFLL 195 (402)
T ss_pred Ccc----ccccccCCcChhhH-HHHHHHHHHHHh--------------CcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 532 23444455555544 555444333331 13466677776665544444333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.37 Score=49.65 Aligned_cols=102 Identities=12% Similarity=0.003 Sum_probs=84.4
Q ss_pred chhhh-HHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHH
Q 047229 370 SIASF-ISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLL 448 (599)
Q Consensus 370 ~~~~~-~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~g~~~~~~ 448 (599)
.++.. .++......+..++.+.+.|+++.| +.+.++......-.+.+...+.+..+....+.|+|.+..+...
T Consensus 50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K------~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~Gq 123 (461)
T KOG3098|consen 50 YAGYYGQAIIYAFFTVSCLFAPSIVNFLGPK------WALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQ 123 (461)
T ss_pred CccHHHHHHHHHHHHHHHHhhHHHHHHhhHH------HHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheeccc
Confidence 34444 6788888899999999999999877 4777877777777777777788889999999999999999999
Q ss_pred HHHHHHhhCCCcccchhhhhhccchhhhh
Q 047229 449 VTIISELFGLKHYSTLYNVGSVSSPIGSY 477 (599)
Q Consensus 449 ~~~~~e~~~~~~~g~~~g~~~~~~~ig~~ 477 (599)
..+.+|...++...+..++.......+.+
T Consensus 124 G~ylt~~st~~tie~Nisi~Wai~~~~li 152 (461)
T KOG3098|consen 124 GGYLTSNSTRETIERNISIFWAIGQSSLI 152 (461)
T ss_pred ceehhhcCChhhHHHHHHHHHHHHHHHHH
Confidence 99999999999889988888766666643
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=92.05 E-value=4.7 Score=41.57 Aligned_cols=131 Identities=11% Similarity=-0.008 Sum_probs=83.2
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHh-hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCC--C
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGG-NLGVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGA--K 120 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~--~ 120 (599)
+.+++.....+...-|+++..++.+=....+.. ...+...++.+|+|..+.-+.+...-.....+...++.....+ .
T Consensus 274 VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~ 353 (432)
T PF06963_consen 274 VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSS 353 (432)
T ss_pred HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 344555555555555999999999655544444 4578999999999999988887664433322222121111100 1
Q ss_pred hhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHH
Q 047229 121 PHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIM 174 (599)
Q Consensus 121 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~ 174 (599)
.+...++.+-++.=+|.=........++-|..| ++||...|.-.+..++-.++-
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 244555555556666666666777778888888 469999999877766654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.87 E-value=4.1 Score=40.51 Aligned_cols=61 Identities=16% Similarity=-0.012 Sum_probs=37.8
Q ss_pred HHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhh-----hhhhhccC
Q 047229 340 FTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASE-----IFLAKYKV 402 (599)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~d-----r~g~r~~~ 402 (599)
.+...+.++.-++....+|.+++..|.|-.+-+......+- .--.+++.++.| |+|||+.+
T Consensus 36 Ll~LYllQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksW 101 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSW 101 (510)
T ss_pred HHHHHHHcCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccce
Confidence 33334445566666778899988777765554443322221 123678888999 88888754
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.00 E-value=5.9 Score=38.21 Aligned_cols=40 Identities=20% Similarity=0.117 Sum_probs=32.3
Q ss_pred HHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhh
Q 047229 438 GFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSY 477 (599)
Q Consensus 438 g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~ 477 (599)
|+.-|..+...+--+.+-.++++|--+.+...++-.+|..
T Consensus 353 GLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~ 392 (409)
T KOG3880|consen 353 GLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIF 392 (409)
T ss_pred hhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHH
Confidence 8877888887777777777889999888888887777754
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.8 Score=43.50 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhh
Q 047229 433 ASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSY 477 (599)
Q Consensus 433 ~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~ 477 (599)
..++.|++.+...+....+++ .+|++. .+....+.++++.
T Consensus 112 ~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv 151 (437)
T TIGR00939 112 SVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGV 151 (437)
T ss_pred HHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHH
Confidence 334456666665555555555 455332 2333445555544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.41 E-value=6.6 Score=39.68 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=26.0
Q ss_pred hcchhhhhcchHHHHHHc-CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047229 347 IGGALAAIDNMGQIGKAL-GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAK 399 (599)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r 399 (599)
......+++..+++.... +.++ +......+.+...+..++.-.+--+...|
T Consensus 31 LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 31 LLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred ccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556566666654 4443 33444555555555555555554444433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.31 E-value=5.2 Score=42.98 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=98.9
Q ss_pred hhhhhcchHHHHH-HcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh--
Q 047229 350 ALAAIDNMGQIGK-ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-- 426 (599)
Q Consensus 350 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 426 (599)
.+++..++-.|+. .++.+...+.-.+..+........+++++++|-+--|. +.+.++.++..+++.++....
T Consensus 53 ~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry-----~tI~~~s~i~~~G~~~lt~~a~~ 127 (571)
T KOG1237|consen 53 FFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY-----FTINIGSLISLLGLFGLTLSAMI 127 (571)
T ss_pred HhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455555554 46777778888888888888888999999999774332 455555555555543322100
Q ss_pred -------------------h-----hhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCC------cccchhhhhhccchhhh
Q 047229 427 -------------------H-----NSLYFASIIIGFCLGAQLSLLVTIISELFGLK------HYSTLYNVGSVSSPIGS 476 (599)
Q Consensus 427 -------------------~-----~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~------~~g~~~g~~~~~~~ig~ 476 (599)
+ ..++....++.+|.|+.-+....+-+|-++.. ....-........++|.
T Consensus 128 ~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~ 207 (571)
T KOG1237|consen 128 PALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGA 207 (571)
T ss_pred hhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHH
Confidence 0 12444555667788888888888888888722 22234444456666675
Q ss_pred hHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047229 477 YIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIIL 529 (599)
Q Consensus 477 ~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 529 (599)
. +...+.-++-|. .+|...|.+..++.+++.++.+..
T Consensus 208 l-~a~t~~vyiq~~---------------~~w~lgf~i~~~~~~lai~iF~~g 244 (571)
T KOG1237|consen 208 L-LAQTVLVYIQDN---------------VGWKLGFGIPTVLNALAILIFLPG 244 (571)
T ss_pred H-HHHHHHHhhhhc---------------ccceeeccHHHHHHHHHHHHHHcC
Confidence 4 444333333333 468888888888777766655544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=81.94 E-value=73 Score=33.64 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHh
Q 047229 447 LLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489 (599)
Q Consensus 447 ~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~ 489 (599)
....++-|.+..++...-+++...+.++|.+ ++..+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli-~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLI-FSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4577888999999999999999999999976 55555554444
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.12 E-value=5.1 Score=37.78 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=51.7
Q ss_pred HHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 047229 361 GKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSLYFASIIIGFC 440 (599)
Q Consensus 361 ~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~ 440 (599)
++.+|+...+.+.++.......++-..+.|-+.||.|||+.- ...++...+.++ .-..++...+.++-.+-|+.
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac---vtycitYiLsCi---TKhSpqYkVLmVGR~LGGia 137 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC---VTYCITYILSCI---TKHSPQYKVLMVGRVLGGIA 137 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce---eeehHHHHHHHH---hhcCCceEEEeehhhhhhHH
Confidence 455688777777766544444455555677889999998621 111222211111 11111223355666677777
Q ss_pred hhhHHHHHHH-HHHHhhCCC
Q 047229 441 LGAQLSLLVT-IISELFGLK 459 (599)
Q Consensus 441 ~g~~~~~~~~-~~~e~~~~~ 459 (599)
....++..-+ ++.|+..++
T Consensus 138 TsLLFSaFEsWliaEHnekr 157 (454)
T KOG4332|consen 138 TSLLFSAFESWLIAEHNEKR 157 (454)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 7777776655 467776444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 599 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 85/556 (15%), Positives = 154/556 (27%), Gaps = 181/556 (32%)
Query: 52 NDIKSSLGYDQTTLNLVSFFKDLGGNLG----VLAGLTYEVAPPWIVLLSGSIMNFFGFF 107
++ +L + N++ + G LG +A V LS + F
Sbjct: 138 LKLRQALLELRPAKNVL-----IDGVLGSGKTWVALD---------VCLSYKVQCKMDFK 183
Query: 108 MIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLI 167
+ WL++ + P L ML Q PN + N + L+ L
Sbjct: 184 IFWLNLKNCN--SPET---VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL- 237
Query: 168 GLSGAIMTQIYHAVNGDNTKALILL-------------LACLPTIVPIVFIPTIRIIKIA 214
+ ++ Y L++L L+C ++ T R ++
Sbjct: 238 -----LKSKPY-------ENCLLVLLNVQNAKAWNAFNLSC-KILL------TTRFKQVT 278
Query: 215 RPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSE---YIATALVVVVLSL----- 266
+ H L + + T E + L L
Sbjct: 279 DFLSAATTTHISL---------------DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 267 -FIPL-----AAVIKQELNIWKG------NKL-QALDAHYDQAIPALNVKTNF--LTLFS 311
P A I+ L W +KL +++ + PA + F L++F
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSVFP 382
Query: 312 LKNVSKKPERGDDYALLQ-----AIFSIDMLILFTATTCSIGGALAAIDNMGQIGKALGY 366
+ P LL I S M+++ S L K
Sbjct: 383 -PSA-HIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYS----LVEKQP-----KESTI 426
Query: 367 PTHSIASFISLISIWNF--LGRIVAGFASEIFLAKYKVPRPL----LLTLVI---LFSCI 417
SI + + N L R + + Y +P+ L+ + +S I
Sbjct: 427 SIPSI-YLELKVKLENEYALHRSI--------VDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 418 GYLLIA------FAVHNSLYF------ASII-IGFCLGAQLSLLVTIISELFGLKHYSTL 464
G+ L + ++ I A S+L T+ LK Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ----LKFYK-- 531
Query: 465 YNVGSVSSPIGSYIFNVRVAGRLYDR--EALKQGKGGLNCIGARCYRVAFVTISAATFFA 522
YI + Y+R A+ L I + +
Sbjct: 532 -----------PYICD---NDPKYERLVNAILD---FLPKIEENLIC---------SKYT 565
Query: 523 CIVSIILVLRTKNFYQ 538
++ I L+ + ++
Sbjct: 566 DLLRIALMAEDEAIFE 581
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 6e-04
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 275 KQELNIWKGNKLQA-LDAHYDQAIPALNVK 303
KQ L K KLQA L + D + PAL +K
Sbjct: 19 KQAL---K--KLQASLKLYADDSAPALAIK 43
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.98 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.92 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.91 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.42 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.36 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.28 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.23 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.92 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.91 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=292.99 Aligned_cols=402 Identities=12% Similarity=0.078 Sum_probs=280.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHH
Q 047229 23 LLDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSI 100 (599)
Q Consensus 23 ~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~ 100 (599)
.++++|..+....+..+..+. .+.++.+.|.+.+++ .+.++.+++.+.+.++..+ +++.|++.||+|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 344566665555555555544 566788889999999 9999999987777777765 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHH
Q 047229 101 MNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYH 179 (599)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~ 179 (599)
+..++.+++++.... . ++++.++++|+++|++.+...+....++.|++| ++|++++++...+.++|..+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~-~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWA-T---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHCHHH-H---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhhc-c---ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998777551000 1 678899999999999999999999999999998 56999999999999999999988876
Q ss_pred HhcCCCh-HHH-HHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHH
Q 047229 180 AVNGDNT-KAL-ILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIAT 257 (599)
Q Consensus 180 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (599)
.+.+... |++ +++.++...+..++..+.+
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~------------------------------------------------- 207 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMM------------------------------------------------- 207 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhc-------------------------------------------------
Confidence 6543111 111 1111111111111111111
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHH
Q 047229 258 ALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDML 337 (599)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (599)
++.+++...++ .++.+ +++ +. + .+++++++...++...++.++++.+|
T Consensus 208 -----------------~~~~~~~~~~~-----------~~~~~-~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 208 -----------------RDTPQSCGLPP-----------IEEYK-NDY-PD-D-YNEKAEQELTAKQIFMQYVLPNKLLW 255 (451)
T ss_dssp -----------------CCSSTTTCCCS-----------CTTTC-CC----------------CCTHHHHHHTSSCHHHH
T ss_pred -----------------cCCHhhcCCCC-----------hhhhc-ccc-cc-c-chhhhhcccccccchHHHHHcCHHHH
Confidence 11111000000 00000 000 00 0 00000111111222257788999999
Q ss_pred HHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhh--hhhccCCchHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIF--LAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~--g~r~~~~~~~~~~~~~~~ 414 (599)
.+.+..++.......+..+++.++++ .|+++.+++...+...++..+++++.|++.||+ ++|+ .+..+..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~------~~~~~~~~ 329 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG------ATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch------hHHHHHHH
Confidence 98888888777777788888988888 699999999999999999999999999999998 7664 33444333
Q ss_pred HH-HHHHHHHHh---hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchh-hhhHhhhhHHHHHHh
Q 047229 415 SC-IGYLLIAFA---VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPI-GSYIFNVRVAGRLYD 489 (599)
Q Consensus 415 ~~-~~~~~~~~~---~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~i-g~~i~~~~l~g~~~~ 489 (599)
.. ++.+++... +.....+..++.|++.+...+....+..|.+|++++|++.|+.+....+ |.. ++|.+.|.+.|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~-~~~~~~g~l~~ 408 (451)
T 1pw4_A 330 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV-AASAIVGYTVD 408 (451)
T ss_dssp HHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33 444444332 2334556667778888888888889999999999999999999999998 876 89999999999
Q ss_pred hhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 490 REALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
. .+|+..|++.+++.+++.++.+++.++
T Consensus 409 ~---------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 409 F---------------FGWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp S---------------SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---------------cCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7 348889999888888877776665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=286.17 Aligned_cols=392 Identities=11% Similarity=0.061 Sum_probs=269.3
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
+++|..+....+..+..+. .+.++.+.|.+.+++|++.++.+++.+.+.++..+ +++.|++.||+|||++++++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 3444444444444455555 56778889999999999999999988888887765 899999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++.++++.. ... ++++.++++|+++|+|.+...+....++.+++| ++|++++++...+.++|..+++.+...+
T Consensus 102 ~~~~~~~~~~--~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 102 ALGAALFWPA--AEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHH--HHT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhc--ccc---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997766332 222 789999999999999999999999999999997 6799999999999999999998887776
Q ss_pred c-CCChH--HHHHHHHHHHHHHHHHhhhccccccccCCcchhhh-HHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHH
Q 047229 182 N-GDNTK--ALILLLACLPTIVPIVFIPTIRIIKIARPENELKV-FHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIAT 257 (599)
Q Consensus 182 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (599)
. ..... ... ....+++...+++.. ...|.......+....+..
T Consensus 177 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---------------- 223 (438)
T 3o7q_A 177 ILSNVPHQSQDV-----------------LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA---------------- 223 (438)
T ss_dssp HHTSSCCCCHHH-----------------HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred Hhcccccccccc-----------------cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH----------------
Confidence 5 32110 000 000000000000000 0001111000110000000
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHH
Q 047229 258 ALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDML 337 (599)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (599)
+ . ....+.+ +++++. +++++++....++++++++|.+|
T Consensus 224 -----~-----~--~~~~~~p-------------------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T 3o7q_A 224 -----L-----L--IMLTKFP-------------------ALQSDN-----------HSDAKQGSFSASLSRLARIRHWR 261 (438)
T ss_dssp -----H-----H--HHHCCCC-------------------CCTTTC-----------CCCSSTTSHHHHHHHHTTCSHHH
T ss_pred -----H-----H--HHHHcCC-------------------cccccc-----------cccccccchhhhHHHHHhChHHH
Confidence 0 0 0000000 000000 00011112234568899999999
Q ss_pred HHHHHHHhhhcchhhhhcchHHH-HHHc-CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQI-GKAL-GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFS 415 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 415 (599)
...+..++.......+..+++.+ .++. |+++.+++...++..++..+++++.|++.||+++|+ .+..+.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~ 335 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK------VLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HHHHHHHHH
Confidence 98888888777777778888988 8776 999999999999999999999999999999998875 556666666
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhc
Q 047229 416 CIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQ 495 (599)
Q Consensus 416 ~~~~~~~~~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~ 495 (599)
.++.+++...+.....+..++.|++.+..++....+..|.+|++ ++.+.++.. ...+++. ++|.+.|.+.|..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~-~~~~~~g~l~~~~g--- 409 (438)
T 3o7q_A 336 MALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG-IVTPVMGFVSDAAG--- 409 (438)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH-HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH-HHHHHHHHHHHHhc---
Confidence 66665555554444455667889999999999999999999865 888888777 5567765 89999999999842
Q ss_pred CCCCccccCcchHHHHHHHHHHHH
Q 047229 496 GKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 496 ~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
+++..|++.+++.
T Consensus 410 -----------~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 410 -----------NIPTAELIPALCF 422 (438)
T ss_dssp -----------SSGGGGHHHHHHH
T ss_pred -----------chHHHHHHHHHHH
Confidence 2666777654443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-31 Score=278.57 Aligned_cols=433 Identities=11% Similarity=0.041 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCC--------CHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHH
Q 047229 28 WFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGY--------DQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLS 97 (599)
Q Consensus 28 w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~i 97 (599)
|.+.+.+.+..+..|. ....+...|.+.++++. +.++.+++.+.+.+|..+ ++++|+++||+|||+++++
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3343333333333443 33345567788777632 345677888888888876 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccC----------CCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHh
Q 047229 98 GSIMNFFGFFMIWLSVSHRF----------GAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGL 166 (599)
Q Consensus 98 g~~~~~~g~~~~~~~~~~~~----------~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~ 166 (599)
+.+++.++.++++++..... ..++|+++++++|+++|+|.|...+....++.|+.| ++|++..++...+
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 99999999876643211000 013789999999999999999999999999999998 5699999999999
Q ss_pred hhhhHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHH
Q 047229 167 IGLSGAIMTQIYHAVNG--------DNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIM 238 (599)
Q Consensus 167 ~~lg~~i~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (599)
..+|.+++..+...... ..+|++.+....++.++.++..+.+++.|+ +..
T Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~---------~L~------------- 228 (491)
T 4gc0_A 171 IIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPR---------WLM------------- 228 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHH---------HHH-------------
T ss_pred hhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChH---------HHH-------------
Confidence 88888887777665532 133455555566666655555555543332 110
Q ss_pred HHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCC
Q 047229 239 VTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKK 318 (599)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (599)
.+.+.++. ++.+.+....+..+++ .. +..+... .++
T Consensus 229 -----------------------------------~~~~~~~a----~~~l~~~~~~~~~~~~-~~--~~~~~~~-~~~- 264 (491)
T 4gc0_A 229 -----------------------------------SRGKQEQA----EGILRKIMGNTLATQA-VQ--EIKHSLD-HGR- 264 (491)
T ss_dssp -----------------------------------HTTCHHHH----HHHHHHHHHHHHHHHH-HH--HHHHHHH-HHH-
T ss_pred -----------------------------------HcCchhHH----HHhHHHhcCCchhHHH-HH--HHHHHHH-hhh-
Confidence 00000000 0000000000000000 00 0000000 000
Q ss_pred CCCCCChhHHHhhcchhHHHHH-HHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhh
Q 047229 319 PERGDDYALLQAIFSIDMLILF-TATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFL 397 (599)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g 397 (599)
+.......++.+...... ...+........+..+.+.+.+..+.+.........+.++...++.++++++.||+|
T Consensus 265 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~G 340 (491)
T 4gc0_A 265 ----KTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFG 340 (491)
T ss_dssp ----HHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----hhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000112233333333333 333333344444555666777777887777777778888999999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHh---h-hh-hHHHHHHHHHHHhh-hHHHHHHHHHHHhhCCCcccchhhhhhcc
Q 047229 398 AKYKVPRPLLLTLVILFSCIGYLLIAFA---V-HN-SLYFASIIIGFCLG-AQLSLLVTIISELFGLKHYSTLYNVGSVS 471 (599)
Q Consensus 398 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~i~~~l~g~~~g-~~~~~~~~~~~e~~~~~~~g~~~g~~~~~ 471 (599)
||+ .+..+...+.++.+.+... . .. ...+..++...+.+ ...+..+.+.+|.+|++.|+++.|+.+..
T Consensus 341 rr~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 341 RKP------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 414 (491)
T ss_dssp SHH------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred Ccc------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 885 4444444444444333221 1 11 12222222222222 23466778999999999999999999988
Q ss_pred chhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 047229 472 SPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYNKFK 546 (599)
Q Consensus 472 ~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 546 (599)
+.+++. +++.+.+.+.+...... ..++...|++.+++++++.+..+++.+|+|+++.||+++.++
T Consensus 415 ~~~~~~-i~~~~~p~l~~~~~~~~---------~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 415 QWLANY-FVSWTFPMMDKNSWLVA---------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHH-HHHTHHHHHCHHHHHHH---------HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHh---------hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 888876 66666666554321100 012456788888889999999999999999988877665544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=248.90 Aligned_cols=410 Identities=12% Similarity=0.065 Sum_probs=247.6
Q ss_pred hhHHHHHhH-----hCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcc-cCChHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 49 LYSNDIKSS-----LGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEV-APPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 49 ~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
.+.+.+.++ +|.+.++.+++.+.+.++..+ +++.|+++|| +|||+++.++.++..++.+++++ . +
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-----~---~ 106 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-----P---F 106 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----C---C
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----h---h
Confidence 344445555 999999999987777777765 8999999999 89999999999999888765532 2 6
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCC-CC--ccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ES--RGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPT 198 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~--rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 198 (599)
+++.++++|+++|+|.+...+....++.|++| ++ |+.+.++...+.++|..+++.+.+.+.+...|++.+....+..
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 186 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGM 186 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 78899999999999999999999999999997 56 6778888889999999999999888776444555444443333
Q ss_pred HHHHHhhhcc-ccc-ccc--CC-----cchh-hhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhc
Q 047229 199 IVPIVFIPTI-RII-KIA--RP-----ENEL-KVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFI 268 (599)
Q Consensus 199 ~~~~~~~~~i-~~~-~~~--~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (599)
++..+..... +.. +++ ++ ..+. ...+..+......++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~------------------------------ 236 (491)
T 4aps_A 187 FIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIV------------------------------ 236 (491)
T ss_dssp HHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHH------------------------------
T ss_pred HHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 3333322222 111 110 00 0000 111100000000000000
Q ss_pred chhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhc
Q 047229 269 PLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIG 348 (599)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (599)
....... ...++......... .... ........+++.. .. .+..+....+.+.+..++...
T Consensus 237 ----~~~~~~~-~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 297 (491)
T 4aps_A 237 ----VMNLVGW-NSLPAYINLLTIVA---------IAIP-VFYFAWMISSVKV-TS---TEHLRVVSYIPLFIAAVLFWA 297 (491)
T ss_dssp ----HHHHHSS-CCTTHHHHHHHHHH---------HHHH-HHHHHHHC----------------CTTHHHHHHHHHHHHH
T ss_pred ----HHHhccC-cccccchhhhhHHH---------HHHH-HHHHHHHhhcccc-cH---HHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000000000000 0000 0000000000000 00 011122223334433333333
Q ss_pred chhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh--
Q 047229 349 GALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-- 425 (599)
Q Consensus 349 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-- 425 (599)
........++.+.++ .+.+....+.......+...++.++.|++.||++||+. .+...+..+..+.+++.+++...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
T 4aps_A 298 IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGA 376 (491)
T ss_dssp HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777776 47776788888899999999999999999999998753 22233445555555555443331
Q ss_pred --------hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCC
Q 047229 426 --------VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGK 497 (599)
Q Consensus 426 --------~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~ 497 (599)
+.....+..++.|++.+...+....++.|.+|++.+|++.|+.++...+|.. ++|.+.+.+.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-i~~~~~~~~~~~------- 448 (491)
T 4aps_A 377 LYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA-LNAQLVTLYNAK------- 448 (491)
T ss_dssp HCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH-HHHHHGGGGGGS-------
T ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc-------
Confidence 2334556677888998888888899999999999999999999999999976 888888877654
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047229 498 GGLNCIGARCYRVAFVTISAATFFACIVSIILVLRT 533 (599)
Q Consensus 498 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 533 (599)
++...|.+.+++++++.++.+++.++.
T Consensus 449 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 449 ---------SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp ---------STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677877777777777666554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-28 Score=244.65 Aligned_cols=328 Identities=13% Similarity=0.018 Sum_probs=240.6
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
...+....|.+.+++|.++++.+++.+...++... +++.|++.||+|||+++.++.++..++.++...+ ++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------SS 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------HH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------cc
Confidence 45567778899999999999999987777777755 8999999999999999999999999998776554 78
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.+++.|+++|++.+...+....++.|++| ++|++++++...+.++|..+++.+.+.+.+...|++.+.......++.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 679999999999999999999888887665323332222211111111
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
.+ ......++.
T Consensus 168 ~~-----------------------------------------------------------------~~~~~~~~~---- 178 (375)
T 2gfp_A 168 TF-----------------------------------------------------------------SMARWMPET---- 178 (375)
T ss_dssp HC-----------------------------------------------------------------CCCCSSCCC----
T ss_pred HH-----------------------------------------------------------------HHHHHCccc----
Confidence 10 000000000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+++ + +++ ++...++++.+|+|+++...+..++.......+..+.|.+.
T Consensus 179 ---------------~~~---~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T 2gfp_A 179 ---------------RPV---D-----------APR---TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLM 226 (375)
T ss_dssp ---------------STT---T-----------CCC---CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSS
T ss_pred ---------------CCC---C-----------ccc---ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000 01112346788899999888877777666666777777777
Q ss_pred HH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH-HHHHHH--HHHH---hhhhhHHHHH
Q 047229 362 KA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF-SCIGYL--LIAF---AVHNSLYFAS 434 (599)
Q Consensus 362 ~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~~~i~~ 434 (599)
++ .|.++.+.+...+...++..+++++.+++.||.+++. ..+... ...+.. .... .+.....+..
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 227 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--------WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--------HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 76 6888888999999999999999999999999987531 122211 222211 1111 1233345667
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 435 IIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 435 ~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++.|++.+...+....+..|.+| +++|++.|+.+....+|.. ++|.+.|.+.+.
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~ 352 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 78889999888889999999998 8999999999999999976 889999998876
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-25 Score=225.91 Aligned_cols=362 Identities=12% Similarity=0.034 Sum_probs=219.2
Q ss_pred hhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhH-HHH
Q 047229 49 LYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHV-WQM 126 (599)
Q Consensus 49 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~-~~l 126 (599)
.+...+++++|+++.+.+++.+...++..+ +++.|+++||+|||++++++.+++.++...+.. .... +.. ..+
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~--~~~~---~~~~~~~ 103 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI--FIFG---PLLQYNI 103 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHH--HTHH---HHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHH
Confidence 333446778999999999977776676655 999999999999999999988776543211110 0000 111 123
Q ss_pred HHHHHHHhccccccchhHHHHHhhcCC---CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNFP---ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIV 203 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~fp---~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (599)
+..+++.|++.+..++.......++.+ ++|+...|....+..+|..+++.+.+.+.+.++ ++.++....+.++.++
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~-~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN-QFVFWLGSGCALILAV 182 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCS-HHHHTTTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHH
Confidence 456677777777665555555555553 346778888877778888888877766543111 1111111111000000
Q ss_pred hhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhc
Q 047229 204 FIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKG 283 (599)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (599)
..+ ..++ +.
T Consensus 183 ~~~-------------------------------------------------------------------~~~~-~~--- 191 (417)
T 2cfq_A 183 LLF-------------------------------------------------------------------FAKT-DA--- 191 (417)
T ss_dssp HSC-------------------------------------------------------------------SSCC-CC---
T ss_pred HHH-------------------------------------------------------------------HcCc-cc---
Confidence 000 0000 00
Q ss_pred hhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH
Q 047229 284 NKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
++..+++++ .++++++....+.++++++|++|...+..++.......+..++|.++.+
T Consensus 192 -------------~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2cfq_A 192 -------------PSSATVANA---------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249 (417)
T ss_dssp -------------SCSSCSSSS---------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccccccccc---------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0000011112245678899998877665444333333344456766655
Q ss_pred c-C---CCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH
Q 047229 364 L-G---YPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIG 438 (599)
Q Consensus 364 ~-g---~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g 438 (599)
. + .+....+...++..++..++.++.|+++||+++|+ .+..+..+.+++.+++...+ ...+.+..++.+
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (417)
T 2cfq_A 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN------ALLLAGTIMSVRIIGSSFATSALEVVILKTLHM 323 (417)
T ss_dssp TSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH------HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHH
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3 2 12333456667777888999999999999998875 45555555555554443332 333444555567
Q ss_pred HHhhhHHHHHHHHHHHhhCCCcccchhhhh-hccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHH
Q 047229 439 FCLGAQLSLLVTIISELFGLKHYSTLYNVG-SVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISA 517 (599)
Q Consensus 439 ~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~-~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 517 (599)
++.+...+....+++|.+|++.+|+++|+. +....+|+. ++|.+.|.+.|. .++...|.+.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~gp~l~G~l~~~---------------~g~~~~f~~~~~ 387 (417)
T 2cfq_A 324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FMSVLAGNMYES---------------IGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HHTHHHHTHHHH---------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-HhhhhHHHHHHh---------------cCcHHHHHHHHH
Confidence 777766677788999999999999999995 777888876 899999999987 348888888888
Q ss_pred HHHHHHHHHHHHHh
Q 047229 518 ATFFACIVSIILVL 531 (599)
Q Consensus 518 ~~~i~~i~~~~~~~ 531 (599)
+++++.++.+++.+
T Consensus 388 ~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 388 VALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhhhc
Confidence 87777766554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=220.79 Aligned_cols=140 Identities=9% Similarity=-0.024 Sum_probs=112.6
Q ss_pred HhhHHHHHhHhC------CCHHHHHHHHHHHHhHhhh-hhhhhhhhccc-CChHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047229 48 ALYSNDIKSSLG------YDQTTLNLVSFFKDLGGNL-GVLAGLTYEVA-PPWIVLLSGSIMNFFGFFMIWLSVSHRFGA 119 (599)
Q Consensus 48 ~~~~~~l~~~~~------~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~ 119 (599)
+.+.+.+.+++| ++..+.+++.+.+.++..+ .++.|+++||+ |||+++.++.++..++.++++++
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~------- 105 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF------- 105 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------
Confidence 344455778899 9999999987777777755 88999999999 99999999999998887765433
Q ss_pred Ch-hHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHH---HHHhhhhhHHHHHHHHHHhcCCChHHHHHHHH
Q 047229 120 KP-HVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGL---LKGLIGLSGAIMTQIYHAVNGDNTKALILLLA 194 (599)
Q Consensus 120 ~~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~---~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~ 194 (599)
+ +++.+++.|+++|++.+...+....++.+++| ++|+++.+. ...+.++|..+++.+.+.+.+...|++.+...
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5 78899999999999999999999999999997 568877666 88888899999988877766544444444433
Q ss_pred H
Q 047229 195 C 195 (599)
Q Consensus 195 ~ 195 (599)
.
T Consensus 185 ~ 185 (524)
T 2xut_A 185 G 185 (524)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-13 Score=137.37 Aligned_cols=178 Identities=11% Similarity=0.056 Sum_probs=140.1
Q ss_pred chhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 333 SIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
.+.++...+..++.......+...++.+.+++ .++.+.+++.+...++..++.++.|+++||+|||+ .+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHHH
Confidence 34444555555554444444555677777778 99999999999999999999999999999999885 667777
Q ss_pred HHHHHHHHHHHH----h-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHH
Q 047229 413 LFSCIGYLLIAF----A-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRL 487 (599)
Q Consensus 413 ~~~~~~~~~~~~----~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~ 487 (599)
++.+++.++... . +...+++..++.|++.+...+...+++.|.+|+++|+.+.|+......+|.. ++|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 777777766655 3 3455677788899999999999999999999999999999999999999976 899999888
Q ss_pred HhhhhhhcCCCCccccCcch-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047229 488 YDREALKQGKGGLNCIGARC-YRVAFVTISAATFFACIVSIILVLRT 533 (599)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~i~~i~~~~~~~~~ 533 (599)
.+. .+ |+..|++.+++.++..++..+..++.
T Consensus 179 ~~~---------------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 179 MAW---------------FNDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHH---------------TCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHH---------------hccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 776 34 88889988887777666655554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=134.24 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=140.6
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHH------cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhh-hhhhccCCchHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKA------LGYPTHSIASFISLISIWNFLGRIVAGFASEI-FLAKYKVPRPLL 407 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr-~g~r~~~~~~~~ 407 (599)
.+|.+.+..++.....+.....++.+.++ +|.+..+.++..+...++..++.++.|+++|| +|||+ .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------~ 87 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------A 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------H
Confidence 45666666666656666666677777655 79999999999999999999999999999999 89886 6
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCc--ccchhhhhhccchhhhhHhhhhHH
Q 047229 408 LTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKH--YSTLYNVGSVSSPIGSYIFNVRVA 484 (599)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~--~g~~~g~~~~~~~ig~~i~~~~l~ 484 (599)
+..+.++..++.++....+ ...+++..++.|++.+...+....++.|.+|+++ ++.+.++.+....+|.. ++|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~ 166 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHHH
Confidence 6777777777776666543 4556777888999999999999999999999988 77888888888999976 899999
Q ss_pred HHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 047229 485 GRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVL 531 (599)
Q Consensus 485 g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 531 (599)
+.+.+. .+|+..|++.++..+++.++..+..+
T Consensus 167 ~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 167 GAAQEA---------------AGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHH---------------SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh---------------hhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999887 35999999988777776666554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-12 Score=129.24 Aligned_cols=143 Identities=15% Similarity=0.018 Sum_probs=115.8
Q ss_pred HHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 047229 339 LFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIG 418 (599)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 418 (599)
+.+.+++...........+|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+.++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~------~l~~~~~~~~~~ 104 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH------HHHHHHHHHHHH
Confidence 33344433333334445577777889999999999999999999999999999999999886 667777777777
Q ss_pred HHHH---HHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHH
Q 047229 419 YLLI---AFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLY 488 (599)
Q Consensus 419 ~~~~---~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~ 488 (599)
.++. ... +...+++..++.|++.+...+....++.|.+|+++|+.+.|+.+....+|.. ++|.+.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~ 177 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6665 333 3455677788899999999999999999999999999999999999999976 8999888887
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.9e-12 Score=125.68 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=127.8
Q ss_pred HHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 047229 340 FTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419 (599)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 419 (599)
.+..++.......+...++.+.+++|.++.+.+...+...++..++.++.|+++||+|||+ .+..+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP------VILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHH
Confidence 3344444444444555677777788999999999999999999999999999999999886 3345555555555
Q ss_pred HHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCC
Q 047229 420 LLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKG 498 (599)
Q Consensus 420 ~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~ 498 (599)
++.... +...+++..++.|++.+...+....++.|.+|+++|+.+.++......+|.. ++|.+.+.+.+.
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~-------- 150 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTM-------- 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCH--------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHh--------
Confidence 554443 3455667778889999999999999999999999999999999999999976 899999988876
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHH
Q 047229 499 GLNCIGARCYRVAFVTISAATFFACI 524 (599)
Q Consensus 499 ~~~~~~~~~~~~~f~~~~~~~~i~~i 524 (599)
.+|+..|++.+++.++..+
T Consensus 151 -------~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 151 -------WNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHC
T ss_pred -------ccHHHHHHHHHHHHHHHHH
Confidence 3589899887776665554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-11 Score=125.70 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHhhhcchhhhhcchHHHHHH-cC------CCCcchhhhHHHHHHHHHHHHHHhhhhhhhh-hhhccCCch
Q 047229 334 IDMLILFTATTCSIGGALAAIDNMGQIGKA-LG------YPTHSIASFISLISIWNFLGRIVAGFASEIF-LAKYKVPRP 405 (599)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~-g~r~~~~~~ 405 (599)
+.+|.+.+..++.....+....+++.++++ +| +++.+.+.+.+...++..++.++.|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 345666666666666666666777777655 68 9999999999999999999999999999999 9886
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhh---hhccchhhhhHhh
Q 047229 406 LLLTLVILFSCIGYLLIAFA--VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNV---GSVSSPIGSYIFN 480 (599)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~---~~~~~~ig~~i~~ 480 (599)
.+..+.++.+++.++.... +...+++..++.|++.+...+...+++.|.+|+++++...+. .+....+|.. ++
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~g 164 (524)
T 2xut_A 87 -TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-FA 164 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred -HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-HH
Confidence 5666666777666665554 344566778888999999999999999999999999766555 7788888875 89
Q ss_pred hhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 047229 481 VRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSI 527 (599)
Q Consensus 481 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 527 (599)
|.+.+.+.+. .+|+..|++.+++.+++.+...
T Consensus 165 ~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKN---------------FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHT---------------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 9989988876 3599999988877666555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=114.30 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=88.6
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-------------------hhhhhH
Q 047229 370 SIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-------------------AVHNSL 430 (599)
Q Consensus 370 ~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 430 (599)
..+++.+.+.++..+|.++.|+++||+|||+ .+.++.++..++.++... .+...+
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRD------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence 3456677788999999999999999999986 677777777777666542 234457
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHH
Q 047229 431 YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRL 487 (599)
Q Consensus 431 ~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~ 487 (599)
++.-++.|++.|+..+..+.+++|..|+++|+...++......+|.. +++.+....
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~ 185 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhh
Confidence 78889999999999999999999999999999999998888877754 554444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4e-10 Score=115.60 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=107.8
Q ss_pred HhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHH
Q 047229 329 QAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLL 407 (599)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~ 407 (599)
+.+|+|++|.+....++..........+++.++++ .|.++.+.+.+.+...++..+++++.|+++||+|||+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~------~ 75 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK------Y 75 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC------H
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------H
Confidence 36789999988877776665556667778888876 6999999999999999999999999999999999886 3
Q ss_pred HHHHHHHHHHH---HHHHHHhhh--hhHHHHHHHHHHHhhhH----HHHHHHHHHHhhCCCcccchhhhhhccchhhhhH
Q 047229 408 LTLVILFSCIG---YLLIAFAVH--NSLYFASIIIGFCLGAQ----LSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYI 478 (599)
Q Consensus 408 ~~~~~~~~~~~---~~~~~~~~~--~~~~i~~~l~g~~~g~~----~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i 478 (599)
+..+..+..+. ......... ........+.+++.+.. .+....+..+. +++++..+|.......+|..
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~- 152 (417)
T 2cfq_A 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWA- 152 (417)
T ss_dssp HHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHH-
Confidence 34333333221 111111110 01112222223333332 33333444332 14667788888888888875
Q ss_pred hhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 479 FNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 479 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
++|.+.+.+.+. +|+..|++.++..
T Consensus 153 ~~~~l~~~l~~~----------------~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 153 LGASIVGIMFTI----------------NNQFVFWLGSGCA 177 (417)
T ss_dssp HHHHHHHHHHHH----------------CSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHh----------------chhHHHHHHHHHH
Confidence 889999988764 3677787665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.41 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.99 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-34 Score=297.33 Aligned_cols=412 Identities=12% Similarity=0.081 Sum_probs=278.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHH
Q 047229 20 GLHLLDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLS 97 (599)
Q Consensus 20 ~~~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~i 97 (599)
+++.++.||.++...++..+.... ...++...|.++ |+|+|.+|++++.+.+.++..+ +++.|+++||+|||+++.+
T Consensus 16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 344456688887766655544433 456777888765 5899999999987777777755 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHH
Q 047229 98 GSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQ 176 (599)
Q Consensus 98 g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~ 176 (599)
+.++..++.++++++... . ++++.+++.|++.|++.|..++....++.+++| ++|++++++...+..+|..+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 170 (447)
T d1pw4a_ 95 GLILAAAVMLFMGFVPWA-T---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL 170 (447)
T ss_dssp HHHHHHHHHHHHHHCHHH-H---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHhhccccchh-h---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhh
Confidence 999998887766543211 1 357789999999999999999999999999997 55999999999999999888877
Q ss_pred HHHHhcC-C-ChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhh
Q 047229 177 IYHAVNG-D-NTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEY 254 (599)
Q Consensus 177 i~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (599)
+...... . +|+..++..+....+..++..+..+.+|+
T Consensus 171 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 209 (447)
T d1pw4a_ 171 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ----------------------------------------- 209 (447)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST-----------------------------------------
T ss_pred hhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchh-----------------------------------------
Confidence 7665432 1 11111222222222221111111111111
Q ss_pred hHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcch
Q 047229 255 IATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSI 334 (599)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (599)
+.... +.+ +.+++..+..++..+++...++...++.++++
T Consensus 210 -------------------------~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (447)
T d1pw4a_ 210 -------------------------SCGLP------------PIE---EYKNDYPDDYNEKAEQELTAKQIFMQYVLPNK 249 (447)
T ss_dssp -------------------------TTCCC------------SCT---TTCCC-------------CCTHHHHHHTSSCH
T ss_pred -------------------------hcccc------------hhh---hhhhhcccchhhccccccchhhHHHHHHHcCc
Confidence 00000 000 00000000000011112222334467788899
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVIL 413 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 413 (599)
.+|......++..........+.+.++++ .+++..+.+....+..+.+.+++++.|++.||+++++ +.........
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~ 326 (447)
T d1pw4a_ 250 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN---RGATGVFFMT 326 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC---HHHHHHHHHH
T ss_pred hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc---cccccchhHH
Confidence 99988888887777777777888888776 5899999999999999999999999999999998764 2222222222
Q ss_pred HHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 414 FSCIGYLLIAF---AVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 414 ~~~~~~~~~~~---~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
+...+...... .+.....+..++.|++.+...+....+..|.+|++.+|++.|+.+....+++.+.+|.+.|.+.|.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~ 406 (447)
T d1pw4a_ 327 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 406 (447)
T ss_dssp HHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222211 123344556677788888888888999999999999999999998888776666889999999998
Q ss_pred hhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047229 491 EALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535 (599)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 535 (599)
.+++..|++..++++++.++..++..++++
T Consensus 407 ---------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 407 ---------------FGWDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp ---------------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 347888888888877777777666555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2e-24 Score=219.14 Aligned_cols=364 Identities=11% Similarity=0.007 Sum_probs=225.5
Q ss_pred HHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 047229 52 NDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHVWQMCLYM 130 (599)
Q Consensus 52 ~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r 130 (599)
..+++++|+|+++++++.+...++..+ +++.|+++||+|||++++++.....++...+....... ......++.+
T Consensus 32 ~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 107 (417)
T d1pv7a_ 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP----LLQYNILVGS 107 (417)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH----HHHTTCHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHH
Confidence 347888999999999987777777755 99999999999999999999888887766554431110 1222334566
Q ss_pred HHHhccccccchhHHHHHhhcC-C--CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 047229 131 LIGANSQSFPNTGALVTCVKNF-P--ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPT 207 (599)
Q Consensus 131 ~l~G~g~g~~~~~~~~~~~~~f-p--~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (599)
++.+.+.+...........+.. + +++....+........+..+++.+...+.+..++..++.......+...+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (417)
T d1pv7a_ 108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp HHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 6666666666555555544444 2 235666777777777777777777665544333333322222222222211111
Q ss_pred cccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhh
Q 047229 208 IRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQ 287 (599)
Q Consensus 208 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 287 (599)
.++.+++
T Consensus 188 ~~~~~~~------------------------------------------------------------------------- 194 (417)
T d1pv7a_ 188 KTDAPSS------------------------------------------------------------------------- 194 (417)
T ss_dssp CCCSCSS-------------------------------------------------------------------------
T ss_pred hcccccc-------------------------------------------------------------------------
Confidence 1110000
Q ss_pred hhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHHc---
Q 047229 288 ALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKAL--- 364 (599)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 364 (599)
.+.+++ +++++++.......+.++++..+......................+....
T Consensus 195 ------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (417)
T d1pv7a_ 195 ------------ATVANA---------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT 253 (417)
T ss_dssp ------------SCSSHH---------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred ------------hhhhhh---------hhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccc
Confidence 000000 00111111122234444444444433333332222222222222222222
Q ss_pred -CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhh
Q 047229 365 -GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLG 442 (599)
Q Consensus 365 -g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g 442 (599)
+.+....+.......++..++..+.+++.||.++|+ .+..+.++.+++.+.+...+ ....++..++.|++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN------ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH------HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhccccccc------chhhhHHHHHHhhhccccccccchhhHHHHHHHHHHH
Confidence 233344555667777888899999999999998775 56666666666666655543 4456677788899999
Q ss_pred hHHHHHHHHHHHhhCCCcccchhhhh-hccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHH
Q 047229 443 AQLSLLVTIISELFGLKHYSTLYNVG-SVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFF 521 (599)
Q Consensus 443 ~~~~~~~~~~~e~~~~~~~g~~~g~~-~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 521 (599)
...+....++.|.+|++.++++.|+. ++...+|.. ++|.+.|.+.|.. +++.+|++.+++.++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~~~~~G~l~~~~---------------g~~~~~~~~~~~~~~ 391 (417)
T d1pv7a_ 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FMSVLAGNMYESI---------------GFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH-HHHHHHHHHHHHH---------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---------------CHHHHHHHHHHHHHH
Confidence 99999999999999999999999985 456678865 8999999999983 588999998888888
Q ss_pred HHHHHHHHHhhhcc
Q 047229 522 ACIVSIILVLRTKN 535 (599)
Q Consensus 522 ~~i~~~~~~~~~~~ 535 (599)
..++..++.+++++
T Consensus 392 ~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 392 FTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHSCCSSC
T ss_pred HHHHHHHhhcCCCc
Confidence 77777776655444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=8.7e-13 Score=134.15 Aligned_cols=155 Identities=11% Similarity=0.105 Sum_probs=123.8
Q ss_pred HHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh-----hhhhHHHH
Q 047229 359 QIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-----VHNSLYFA 433 (599)
Q Consensus 359 ~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 433 (599)
++.++.|+|..+.+++.+...++..++.++.|+++||+|||+ .+..+.++.+++.++.... +...+++.
T Consensus 49 p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (447)
T d1pw4a_ 49 PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 122 (447)
T ss_dssp HHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Confidence 445668999999999999999999999999999999999886 6666776666666555432 23456777
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHH
Q 047229 434 SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFV 513 (599)
Q Consensus 434 ~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 513 (599)
.++.|++.+..++....++.|.+|+++|+.+.|+.+....+|.. ++|.+.+.+.+.. .+|+..|+
T Consensus 123 ~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~--------------~~w~~~~~ 187 (447)
T d1pw4a_ 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLLGMAWF--------------NDWHAALY 187 (447)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHT--------------CCSTTCTH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhh-hhhhhhhhHhhhh--------------hcccccch
Confidence 78889999999999999999999999999999999999999976 7887777776652 35788888
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 047229 514 TISAATFFACIVSIILVLRTK 534 (599)
Q Consensus 514 ~~~~~~~i~~i~~~~~~~~~~ 534 (599)
+.+.+.++..++.+++.++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 188 MPAFCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHHHHHCCCSS
T ss_pred hhhhhHHHHHHHHHHhcccch
Confidence 877777766666665554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=6e-10 Score=110.81 Aligned_cols=154 Identities=10% Similarity=0.045 Sum_probs=97.2
Q ss_pred hhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHH
Q 047229 330 AIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLL 408 (599)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~ 408 (599)
.+|||++|.+.+..++...........++.++++ .|.|+.+.+++.+...++..++.++.|+++||+|||+ .+
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~------~l 76 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK------YL 76 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT------HH
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH------HH
Confidence 5799999999988887766666666677877765 6999999999999999999999999999999999886 44
Q ss_pred HHHHHHHHHHHHHHHHhhh-h----hHHHHHHHHHHHhhhHHHHHHHHHHHhhC--CCcccchhhhhhccchhhhhHhhh
Q 047229 409 TLVILFSCIGYLLIAFAVH-N----SLYFASIIIGFCLGAQLSLLVTIISELFG--LKHYSTLYNVGSVSSPIGSYIFNV 481 (599)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~-~----~~~i~~~l~g~~~g~~~~~~~~~~~e~~~--~~~~g~~~g~~~~~~~ig~~i~~~ 481 (599)
..+..+..++..+...... . ...+...+.+.+.+...........+..+ .+.+....+........+.. ++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 155 (417)
T d1pv7a_ 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccc-ccc
Confidence 4444444444444332221 1 11222223333333322222222222211 12334445555555566644 778
Q ss_pred hHHHHHHhh
Q 047229 482 RVAGRLYDR 490 (599)
Q Consensus 482 ~l~g~~~~~ 490 (599)
.+.+.+.+.
T Consensus 156 ~~~~~l~~~ 164 (417)
T d1pv7a_ 156 SIVGIMFTI 164 (417)
T ss_dssp HHHHHHHHH
T ss_pred ccccccccc
Confidence 888877766
|