Citrus Sinensis ID: 047240

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI
Secondary Structure (PSIPRED)
cccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
QTTFRKKFWDFvaaepnlesIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI
Flexible Loop (DISEMBL)
QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSlvdvgggtgtMARAIATGFLI
Low Complexity Region (SEG)
QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI
Disordered region (IsUnstruct)
****RKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF**
Disordered Region (DISOPRED)
*TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI
Disordered Region (DISEMBL)
QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI
Disordered Region (DISPRO)
*****KKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
B6VJS4	357	Trans-resveratrol di-O-me	no	no	0.971	0.193	0.478	4e-14
O22309	352	Isoflavone-7-O-methyltran	N/A	no	0.929	0.187	0.492	2e-11
O24529	352	Isoflavone-7-O-methyltran	N/A	no	0.929	0.187	0.492	2e-11
O22308	352	Isoflavone-7-O-methyltran	N/A	no	0.929	0.187	0.492	2e-11
B0EXJ8	355	Tabersonine 16-O-methyltr	N/A	no	0.971	0.194	0.449	2e-10
Q9LEL6	347	(RS)-norcoclaurine 6-O-me	N/A	no	0.957	0.195	0.416	2e-10
P0DH60	360	6a-hydroxymaackiain methy	N/A	no	0.957	0.188	0.465	3e-10
C6TAY1	358	Flavonoid 4'-O-methyltran	no	no	0.859	0.170	0.451	3e-10
Q93WU2	357	Eugenol O-methyltransfera	N/A	no	0.816	0.162	0.517	4e-10
Q93WU3	356	Chavicol O-methyltransfer	N/A	no	0.816	0.162	0.482	5e-10

>sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 48/69 (69%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
            T + + FWD+   EP L + F +AM +D+ L+T V++++ + VF GL SLVDVGGGTG 
Sbjct: 146 HTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLKEGQGVFAGLNSLVDVGGGTGK 205

Query: 61  MARAIATGF 69
           +A+AIA  F
Sbjct: 206 VAKAIANAF 214

Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME).
Vitis vinifera (taxid: 29760)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0

>sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 3   TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMA 62
           T    FWDF+   P   + F DAM +DS+LI +  + DC  VF GL+S+VDVGGGTGT A
Sbjct: 145 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTA 203

Query: 63  RAIATGF 69
           + I   F
Sbjct: 204 KIICETF 210

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 3   TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMA 62
           T    FWDF+   P   + F DAM +DS+LI +  + DC  VF GL+S+VDVGGGTGT A
Sbjct: 145 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTA 203

Query: 63  RAIATGF 69
           + I   F
Sbjct: 204 KIICETF 210

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 3   TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMA 62
           T    FWDF+   P   + F DAM +DS+LI +  + DC  VF GL+S+VDVGGGTGT A
Sbjct: 145 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTA 203

Query: 63  RAIATGF 69
           + I   F
Sbjct: 204 KIICETF 210

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 46/69 (66%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
           +T   K FW + +        F +AM +DS+LI+ ++I + K +F+GL SLVD+GGGTGT
Sbjct: 145 ETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLIGEYKFLFEGLASLVDIGGGTGT 204

Query: 61  MARAIATGF 69
           +A+AIA  F
Sbjct: 205 IAKAIAKNF 213

16-O-methyltransferase involved in the biosynthesis of vindoline. Highly specific for 16-hydroxytabersonine. No activity with tabersonine, 3-hydroxytyramine, 4-hydroxytyramine, 5-hydroxytryptamine (5HT), 2,3-dihydro-3-hydroxytabersonine, lochnericine, hoerhammericine, 16-hydroxy-2,3-dihydro-3-hydroxytabersonine, 16-hydroxylochnericine, 16-hydroxyhoerhammericine, quercetin, kaempferol and caffeic acid as substrates.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q9LEL6|6OMT_COPJA (RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 2   TTFRKKF----WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGG 57
           T F K      W ++A  P    +F +AM  DS LI   ++++C  +F G+ +LVDVGGG
Sbjct: 135 TAFEKALGTNIWGYMAEHPEKNQLFNEAMANDSRLIMSALVKECGNIFNGITTLVDVGGG 194

Query: 58  TGTMARAIATGF 69
           TGT  R IA  F
Sbjct: 195 TGTAVRNIANAF 206

Catalyzes the transfer of the S-methyl group of S-adenosyl-L-methionine (AdoMet) to the 6-hydroxyl group of norcoclaurine to form coclaurine.

Coptis japonica (taxid: 3442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 8

>sp|P0DH60|M3OM2_PEA 6a-hydroxymaackiain methyltransferase 2 OS=Pisum sativum GN=HMM2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 5/73 (6%)

Query: 1   QTTFR----KKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGG 56
           QT F     + +WDF+  + +  SIF DAM ADS L  + + E+ K VF+GL+SLVDV G
Sbjct: 146 QTLFECATGENYWDFLNKDSDYLSIFQDAMAADSRLFKLAIQEN-KHVFEGLESLVDVAG 204

Query: 57  GTGTMARAIATGF 69
           GTG +A+ I   F
Sbjct: 205 GTGGVAKLIHEAF 217

3-O-methyltransferase involved in the phytoalexin pisatin biosynthesis. Can use (+)-6a-hydroxymaackiain, (+)-maackiain and with a lower activity (+)-medicarpin and 2,7,4'-trihydroxyisoflavanone as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|C6TAY1|SOMT2_SOYBN Flavonoid 4'-O-methyltransferase OS=Glycine max PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 8   FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67
           FWDF+  +P     F +AM  DS+++ +    DC  VF+GL+S+VDVGGGTG  A+ I  
Sbjct: 155 FWDFINKDPAYNKSFNEAMACDSQMLNLA-FRDCNWVFEGLESIVDVGGGTGITAKIICE 213

Query: 68  GF 69
            F
Sbjct: 214 AF 215

S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the 4'-methylation of naringenin (4',5,7-trihydroxyflavanone) into ponciretin (4'-methoxy-5,7-dihydroxyflavanone). In vitro, also able to convert apigenin, daidzein, genistein and quercetin into the 4'-O-methylated compounds acacetin, formononetin, biochanine A and 4'-methylated quercetin, respectively.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

EC: 1

>sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 8   FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAI 65
           FW+ +A EP+    F +AM  DS LI  V  +D K V +G+++LVDVGGG GTMA+AI
Sbjct: 156 FWEKLANEPSKGRFFDEAMSCDSRLIAHVFTKDYKHVIEGIRTLVDVGGGNGTMAKAI 213

Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|Q93WU3|CVMT1_OCIBA Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 8   FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAI 65
           FW+ +A +P++   F +AM  DS L+  V+ +D K V  G+++LVDVGGG GTMA+AI
Sbjct: 155 FWEKLANKPSMGRFFDEAMSCDSRLVAHVLTKDYKHVIDGIRTLVDVGGGNGTMAKAI 212

Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of chavicol to methylchavicol. Can also convert eugenol to methyleugenol but with less affinity.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
359485253	351	PREDICTED: tabersonine 16-O-methyltransf	0.957	0.193	0.573	1e-16
225446487	357	PREDICTED: tabersonine 16-O-methyltransf	0.957	0.190	0.573	1e-16
147826879	357	hypothetical protein VITISV_021917 [Viti	0.957	0.190	0.573	1e-16
356551928	359	PREDICTED: LOW QUALITY PROTEIN: 8-hydrox	0.971	0.192	0.579	2e-16
356553134	349	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.971	0.197	0.579	2e-16
356553132	358	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.971	0.192	0.579	2e-16
356517460	359	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.873	0.172	0.645	4e-16
356517462	350	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.873	0.177	0.645	4e-16
123718238	346	putative orcinol O-methyltransferase [Ro	0.957	0.196	0.573	7e-16
27527928	348	orcinol O-methyltransferase [Rosa hybrid	0.957	0.195	0.573	8e-16

>gi|359485253|ref|XP_003633246.1| PREDICTED: tabersonine 16-O-methyltransferase isoform 2 [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query: 2   TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTM 61
           T + K FWD+ A EP   + F +AM +DS+LI  VV+ +CKEVF+GL SL+DVGGGTGTM
Sbjct: 147 TAYGKPFWDYAAHEPKFNNFFNEAMASDSQLIASVVVGECKEVFRGLSSLIDVGGGTGTM 206

Query: 62  ARAIATGF 69
           A+ IA  F
Sbjct: 207 AKVIAKAF 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446487|ref|XP_002278149.1| PREDICTED: tabersonine 16-O-methyltransferase isoform 1 [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query: 2   TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTM 61
           T + K FWD+ A EP   + F +AM +DS+LI  VV+ +CKEVF+GL SL+DVGGGTGTM
Sbjct: 147 TAYGKPFWDYAAHEPKFNNFFNEAMASDSQLIASVVVGECKEVFRGLSSLIDVGGGTGTM 206

Query: 62  ARAIATGF 69
           A+ IA  F
Sbjct: 207 AKVIAKAF 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826879|emb|CAN73269.1| hypothetical protein VITISV_021917 [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query: 2   TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTM 61
           T + K FWD+ A EP   + F +AM +DS+LI  VV+ +CKEVF+GL SL+DVGGGTGTM
Sbjct: 147 TAYGKPFWDYAAHEPKFNNFFNEAMASDSQLIASVVVGECKEVFRGLSSLIDVGGGTGTM 206

Query: 62  ARAIATGF 69
           A+ IA  F
Sbjct: 207 AKVIAKAF 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551928|ref|XP_003544324.1| PREDICTED: LOW QUALITY PROTEIN: 8-hydroxyquercetin 8-O-methyltransferase-like [Glycine max]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 50/69 (72%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
           +T   K FWD+  A+P L  +F DAM +D+  +T +VIE CK VF GL+SLVDVGGGTGT
Sbjct: 148 ETAHGKMFWDYAGADPKLNHLFNDAMASDARFVTSLVIEKCKGVFMGLESLVDVGGGTGT 207

Query: 61  MARAIATGF 69
           MA+AIA  F
Sbjct: 208 MAKAIAXSF 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553134|ref|XP_003544913.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like isoform 2 [Glycine max]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 50/69 (72%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
           +T   K FWD+  A+P L  +F DAM +D+  +T +VIE CK VF GL+SLVDVGGGTGT
Sbjct: 147 ETAHGKMFWDYAGADPKLNHLFNDAMASDARFVTSLVIEKCKGVFMGLESLVDVGGGTGT 206

Query: 61  MARAIATGF 69
           MA+AIA  F
Sbjct: 207 MAKAIAKSF 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553132|ref|XP_003544912.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like isoform 1 [Glycine max]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 50/69 (72%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
           +T   K FWD+  A+P L  +F DAM +D+  +T +VIE CK VF GL+SLVDVGGGTGT
Sbjct: 147 ETAHGKMFWDYAGADPKLNHLFNDAMASDARFVTSLVIEKCKGVFMGLESLVDVGGGTGT 206

Query: 61  MARAIATGF 69
           MA+AIA  F
Sbjct: 207 MAKAIAKSF 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517460|ref|XP_003527405.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like isoform 1 [Glycine max]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/62 (64%), Positives = 48/62 (77%)

Query: 8   FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67
           FWD+ ++EP L  +F DAM  DS LI+ V+IE CK VF GL+SLVDVGGGTGTMA+AIA 
Sbjct: 156 FWDYASSEPKLNHLFNDAMTNDSRLISSVLIEKCKGVFSGLESLVDVGGGTGTMAKAIAK 215

Query: 68  GF 69
            F
Sbjct: 216 SF 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517462|ref|XP_003527406.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like isoform 2 [Glycine max]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/62 (64%), Positives = 48/62 (77%)

Query: 8   FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67
           FWD+ ++EP L  +F DAM  DS LI+ V+IE CK VF GL+SLVDVGGGTGTMA+AIA 
Sbjct: 156 FWDYASSEPKLNHLFNDAMTNDSRLISSVLIEKCKGVFSGLESLVDVGGGTGTMAKAIAK 215

Query: 68  GF 69
            F
Sbjct: 216 SF 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718238|emb|CAJ65634.1| putative orcinol O-methyltransferase [Rosa odorata var. gigantea]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 52/68 (76%)

Query: 2   TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTM 61
           TT    FWD+   +PN+  +F DAM +D+ L+T V+I+DCK VF+GL+SLVDVGGGTGT+
Sbjct: 146 TTHGMTFWDYGNHQPNIAHLFNDAMASDARLVTSVIIDDCKGVFEGLESLVDVGGGTGTV 205

Query: 62  ARAIATGF 69
           A+AIA  F
Sbjct: 206 AKAIADAF 213

Source: Rosa odorata var. gigantea

Species: Rosa odorata

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27527928|emb|CAD29556.1| orcinol O-methyltransferase [Rosa hybrid cultivar]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 52/68 (76%)

Query: 2   TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTM 61
           TT    FWD+   +PN+  +F DAM +D+ L+T V+I+DCK VF+GL+SLVDVGGGTGT+
Sbjct: 147 TTHGMTFWDYGNHQPNIAHLFNDAMASDARLVTSVIIDDCKGVFEGLESLVDVGGGTGTV 206

Query: 62  ARAIATGF 69
           A+AIA  F
Sbjct: 207 AKAIADAF 214

Source: Rosa hybrid cultivar

Species: Rosa hybrid cultivar

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
UNIPROTKB|B0EXJ8	355	16OMT "Tabersonine 16-O-methyl	0.971	0.194	0.449	1.2e-10
UNIPROTKB|Q8GSN1	348	Q8GSN1 "Myricetin O-methyltran	0.957	0.195	0.492	1.9e-10
UNIPROTKB|Q6VMW0	366	OMT2 "8-hydroxyquercetin 8-O-m	0.957	0.185	0.382	1.3e-09
UNIPROTKB|Q84KK5	357	D7OMT "Isoflavone 7-O-methyltr	0.859	0.170	0.435	1.5e-09
UNIPROTKB|Q84KK6	367	HI4'OMT "Isoflavone 4'-O-methy	0.887	0.171	0.439	2.7e-09
UNIPROTKB|Q84KK4	365	HI4'OMT "Isoflavone 4'-O-methy	0.887	0.172	0.409	7e-08
UNIPROTKB|A8QW53	374	OMT3 "5-pentadecatrienyl resor	0.859	0.163	0.377	1.2e-06
TAIR|locus:2132806	382	AT4G35160 [Arabidopsis thalian	0.845	0.157	0.360	0.00011
TAIR|locus:2164087	378	AT5G53810 [Arabidopsis thalian	0.873	0.164	0.333	0.00061

UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 155 (59.6 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/69 (44%), Positives = 46/69 (66%)

Query:     1 QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
             +T   K FW + +        F +AM +DS+LI+ ++I + K +F+GL SLVD+GGGTGT
Sbjct:   145 ETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLIGEYKFLFEGLASLVDIGGGTGT 204

Query:    61 MARAIATGF 69
             +A+AIA  F
Sbjct:   205 IAKAIAKNF 213

GO:0005737 "cytoplasm" evidence=IDA

GO:0009821 "alkaloid biosynthetic process" evidence=IDA

GO:0030766 "11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 153 (58.9 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 34/69 (49%), Positives = 44/69 (63%)

Query:     1 QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
             +T   K FWDF  AE      F   M ADS L++ ++I +   +F+GL SLVDVGGGTGT
Sbjct:   136 ETAHGKNFWDF-GAEDKYGKNFDGVMAADSILVSKMLIPEFNYLFEGLDSLVDVGGGTGT 194

Query:    61 MARAIATGF 69
             +A+AIA  F
Sbjct:   195 IAKAIAKSF 203

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)]

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:     2 TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTM 61
             T +   F ++  A+  L  +F +AM  D+  +  ++  +C+E+F GL+S+VDVGGGTG  
Sbjct:   155 TKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSILTTECREIFDGLESMVDVGGGTGAT 214

Query:    62 ARAIATGF 69
             A+ IA  F
Sbjct:   215 AKGIAAAF 222

GO:0009812 "flavonoid metabolic process" evidence=IDA

GO:0030761 "8-hydroxyquercitin 8-O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query:     8 FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67
             FW+F+   P     F DAM +DS++I +  + DC   F+G++S+VDVGGG GT A+ I  
Sbjct:   155 FWEFLNENPEYNKSFNDAMASDSQMINLA-LRDCNSGFEGVESIVDVGGGIGTTAKIICD 213

Query:    68 GF 69
              F
Sbjct:   214 TF 215

GO:0009717 "isoflavonoid biosynthetic process" evidence=IDA

GO:0033800 "isoflavone 7-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 143 (55.4 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 29/66 (43%), Positives = 45/66 (68%)

Query:     6 KKFWDFVA--AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMAR 63
             + FWDF+   +E    S+F +AM ADS++  +  +++C+ VF+GL+SLVDVGGGTG + +
Sbjct:   160 ESFWDFLNKDSESGTLSMFQEAMAADSQMFKLA-LKECRHVFEGLESLVDVGGGTGGVTK 218

Query:    64 AIATGF 69
              I   F
Sbjct:   219 LIHEEF 224

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)]

 Score = 130 (50.8 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query:     6 KKFWDFVAAEPNLE--SIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMAR 63
             + FW+F+  E   +  S+F +AM ADS +  +  +++CK VF+GL SLVDV GG G + +
Sbjct:   158 ESFWEFLNKETESDTLSMFQEAMAADSHMFKLA-LKECKHVFEGLGSLVDVAGGRGGVTK 216

Query:    64 AIATGF 69
              I   F
Sbjct:   217 LIREAF 222

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query:     9 WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68
             W+    +  + ++F +AM ADS  +  +++++  EVF G+ SLVDV GG G    AIA  
Sbjct:   170 WEVCRRDDAINALFNNAMAADSNFLMQILLKEFSEVFLGIDSLVDVAGGVGGATMAIAAA 229

Query:    69 F 69
             F
Sbjct:   230 F 230

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query:     6 KKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTG-TMARA 64
             K  W F    P L  +  +AM  D+  +   V   C  +F G+ ++VDVGGGTG TM   
Sbjct:   169 KDVWSFAQDNPFLSDMINEAMACDARRVVPRVAGACHGLFDGVTTMVDVGGGTGETMGML 228

Query:    65 I 65
             +
Sbjct:   229 V 229

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00061, P = 0.00060
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query:     7 KFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIA 66
             K ++++ A+     +F  AM+  S ++T  V++   E FK +K+LVDVGGG G     I 
Sbjct:   175 KLFEYIQADERFGKVFNRAMLESSTMVTEKVLK-FYEGFKDVKTLVDVGGGLGNTLGLIT 233

Query:    67 TGF 69
             + +
Sbjct:   234 SKY 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       71        71   0.00091  102 3  11 22  0.43    28
                                                     29  0.42    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  484 (52 KB)
  Total size of DFA:  86 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.28u 0.12s 8.40t   Elapsed:  00:00:01
  Total cpu time:  8.28u 0.12s 8.40t   Elapsed:  00:00:01
  Start:  Fri May 10 23:55:07 2013   End:  Fri May 10 23:55:08 2013

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018660001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (357 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	71
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	1e-12

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 8   FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67
           F++++ A+P    +F  AM A S L+   ++E     F GL SLVDVGGGTG +A AI  
Sbjct: 63  FFEYLGADPEFNRVFNRAMAAHSRLVMKKILE-TAFDFSGLSSLVDVGGGTGALAAAIVR 121

Query: 68  GF 69
            +
Sbjct: 122 AY 123

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.73
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.35
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.71
PRK06922	677	hypothetical protein; Provisional	98.22
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.42
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	97.3
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.1
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.09
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.03
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.95
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.56
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	96.53
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.5
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.48
PF13679	141	Methyltransf_32: Methyltransferase domain	96.46
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	96.45
PRK07402	196	precorrin-6B methylase; Provisional	96.44
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	96.4
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.39
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.34
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	96.28
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.22
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.21
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	96.17
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	96.13
PRK11207	197	tellurite resistance protein TehB; Provisional	96.08
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.99
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.97
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	95.95
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	95.93
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.92
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	95.92
PRK08317	241	hypothetical protein; Provisional	95.9
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.89
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	95.76
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	95.73
PRK04457	262	spermidine synthase; Provisional	95.71
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	95.7
PRK06202	232	hypothetical protein; Provisional	95.7
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	95.64
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	95.63
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	95.62
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.6
TIGR03438	301	probable methyltransferase. This model represents	95.53
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	95.39
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	95.36
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.34
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.32
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.28
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	95.28
TIGR00452	314	methyltransferase, putative. Known examples to dat	95.27
TIGR00740	239	methyltransferase, putative. A simple BLAST search	95.26
COG2890	280	HemK Methylase of polypeptide chain release factor	95.25
TIGR00438	188	rrmJ cell division protein FtsJ.	95.12
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	95.12
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.06
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	95.06
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	94.88
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	94.86
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	94.84
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	94.78
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	94.77
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	94.76
PLN02336	475	phosphoethanolamine N-methyltransferase	94.64
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	94.62
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	94.62
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	94.5
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	94.49
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	94.48
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	94.46
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	94.43
PLN02366	308	spermidine synthase	94.34
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	94.32
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	94.31
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	94.26
PLN02244	340	tocopherol O-methyltransferase	94.26
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	94.23
PLN02336	475	phosphoethanolamine N-methyltransferase	94.12
PLN02490	340	MPBQ/MSBQ methyltransferase	94.09
PRK00811	283	spermidine synthase; Provisional	94.05
PRK12335	287	tellurite resistance protein TehB; Provisional	93.98
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	93.97
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	93.92
COG4123	248	Predicted O-methyltransferase [General function pr	93.91
PRK05785	226	hypothetical protein; Provisional	93.85
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	93.82
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	93.76
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	93.74
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	93.69
PRK14968	188	putative methyltransferase; Provisional	93.66
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	93.63
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	93.56
PRK04266	226	fibrillarin; Provisional	93.44
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	93.42
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	93.32
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.29
KOG3115	249	consensus Methyltransferase-like protein [General	93.21
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	92.99
PRK01581	374	speE spermidine synthase; Validated	92.92
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	92.89
PLN02233	261	ubiquinone biosynthesis methyltransferase	92.81
PRK03612	521	spermidine synthase; Provisional	92.58
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	92.55
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	92.53
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	92.38
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	92.3
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	92.27
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	92.13
KOG1271	227	consensus Methyltransferases [General function pre	92.12
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	92.01
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	91.98
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	91.93
PLN02585	315	magnesium protoporphyrin IX methyltransferase	91.76
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	91.74
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	91.59
PHA03412	241	putative methyltransferase; Provisional	91.5
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	91.22
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	91.03
PRK14902	444	16S rRNA methyltransferase B; Provisional	90.94
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	90.81
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.65
PRK10901	427	16S rRNA methyltransferase B; Provisional	90.51
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	90.43
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	90.39
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	90.11
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	89.98
PRK14967	223	putative methyltransferase; Provisional	89.95
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	89.72
PLN02672	1082	methionine S-methyltransferase	89.68
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	89.55
cd02190	379	epsilon_tubulin The tubulin superfamily includes f	89.49
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	89.46
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	89.44
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	89.35
COG0248	492	GppA Exopolyphosphatase [Nucleotide transport and	88.85
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	88.82
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	88.53
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	88.46
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	88.42
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	88.27
PHA03411	279	putative methyltransferase; Provisional	88.27
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	88.19
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	87.92
PTZ00146	293	fibrillarin; Provisional	87.35
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	87.32
PF06792	403	UPF0261: Uncharacterised protein family (UPF0261);	87.31
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	87.19
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	87.09
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	87.0
KOG3010	261	consensus Methyltransferase [General function pred	86.98
KOG2899	288	consensus Predicted methyltransferase [General fun	86.83
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	86.72
KOG2904	328	consensus Predicted methyltransferase [General fun	86.04
cd02188	431	gamma_tubulin Gamma-tubulin is a ubiquitous phylog	85.92
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	85.69
COG1565	370	Uncharacterized conserved protein [Function unknow	85.28
cd00286	328	Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin	85.02
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	84.17
cd06059	382	Tubulin The tubulin superfamily includes five dist	83.97
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	83.93
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	83.91
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	83.43
PRK14901	434	16S rRNA methyltransferase B; Provisional	83.39
PRK02399	406	hypothetical protein; Provisional	83.32
PTZ00387	465	epsilon tubulin; Provisional	83.24
PF02541	285	Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I	83.15
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	82.78
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	82.68
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	82.66
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	82.02
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	81.83
COG5023	443	Tubulin [Cytoskeleton]	81.76
PRK04148	134	hypothetical protein; Provisional	81.66
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	81.45
PLN03075	296	nicotianamine synthase; Provisional	81.39
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	81.33
COG4976	287	Predicted methyltransferase (contains TPR repeat)	81.32
PLN02823	336	spermine synthase	80.62
PRK14903	431	16S rRNA methyltransferase B; Provisional	80.6
PRK13255	218	thiopurine S-methyltransferase; Reviewed	80.3

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.73  E-value=5.2e-18  Score=103.31  Aligned_cols=67  Identities=34%  Similarity=0.646  Sum_probs=61.1

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhH-HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELIT-IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~-~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+.|+.+|+..+.... +.+++.+|  |++..+|||||||.|+++.+++++||+
T Consensus        57 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~  124 (241)
T PF00891_consen   57 AFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPN  124 (241)
T ss_dssp             HHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTT
T ss_pred             hcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCC
Confidence            46788999999999999999999999988887 88899999  899999999999999999999999996

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.35  E-value=2.2e-12  Score=82.39  Aligned_cols=69  Identities=25%  Similarity=0.368  Sum_probs=65.0

Q ss_pred             ccCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            2 TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         2 ~~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+||+.+|+|...++.....|+++|...+....+.++..|.. |++..++||||||.|..+..++..||+
T Consensus       133 ~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~fp~  201 (342)
T KOG3178|consen  133 TAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKYPH  201 (342)
T ss_pred             cccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhCCC
Confidence            578989999999999999999999999999999999999985 999999999999999999999999985

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.71  E-value=5.2e-08  Score=61.34  Aligned_cols=50  Identities=24%  Similarity=0.660  Sum_probs=39.1

Q ss_pred             HHHHHHHH-hcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           20 SIFYDAMI-ADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        20 ~~F~~~M~-~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..|...|. .......+.+++..+  +++..+|+|||||+|.++..+++++|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~  173 (306)
T TIGR02716       123 NLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPE  173 (306)
T ss_pred             HHhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCC
Confidence            34555555 333444566788888  888899999999999999999999995

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06922 hypothetical protein; Provisional

Probab=98.22  E-value=4.3e-06  Score=57.84  Aligned_cols=64  Identities=17%  Similarity=0.123  Sum_probs=49.7

Q ss_pred             CChhhhhhcCcchHHHHHHHHHhcchhh--HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            6 KKFWDFVAAEPNLESIFYDAMIADSELI--TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         6 ~~~f~~~~~~p~~~~~F~~~M~~~~~~~--~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      +.+|+++..+++..++|...|.......  .......++  +....+|+|||+|+|.++..+++++|+
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~  442 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETED  442 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCC
Confidence            4689999999999999998887654432  222344566  567789999999999999999988874

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.42  E-value=0.00028  Score=41.57  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=33.4

Q ss_pred             HHHHH-HHhcchhhHHHH-HHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           21 IFYDA-MIADSELITIVV-IEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        21 ~F~~~-M~~~~~~~~~~~-~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .|.++ |...+......+ +...+  .....+|+|||.|+|.++..+++++|+
T Consensus         5 ~f~~~~~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~   55 (187)
T PRK08287          5 LFLRGEKVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPS   55 (187)
T ss_pred             hhccCCCCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCC
Confidence            44454 444444443333 34445  556779999999999999999998874

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=97.30  E-value=0.00069  Score=41.73  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=29.2

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+++.++  .....+|+|||.|+|.++..+++++|+
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~   53 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPG   53 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCC
Confidence            45677776  566789999999999999999998773

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.10  E-value=0.00076  Score=36.14  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             CceeEeecCCccHHHHHHHHhcCC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+|+|||.|+|.++..+++++|.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~   25 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPG   25 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTT
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCC
Confidence            368999999999999999997763

...

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.09  E-value=0.002  Score=34.86  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=26.3

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++..++  .....+++|+|.|.|.++..+++++|+
T Consensus        11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~   43 (124)
T TIGR02469        11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPN   43 (124)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCC
Confidence            445555  445579999999999999999998873

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.03  E-value=0.0022  Score=39.34  Aligned_cols=36  Identities=14%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+++..+  .....+|+|||.|+|.++..+++++|.
T Consensus        20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~   55 (258)
T PRK01683         20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPA   55 (258)
T ss_pred             HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCC
Confidence            456777776  667789999999999999999998763

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.95  E-value=0.005  Score=37.05  Aligned_cols=62  Identities=15%  Similarity=0.141  Sum_probs=41.3

Q ss_pred             ChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240            7 KFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus         7 ~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..|+.+...++....+...|..........+++..+.......+++|||.|+|.++..+++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~   76 (219)
T TIGR02021        15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR   76 (219)
T ss_pred             HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC
Confidence            45676777777778888877543333333444433310234689999999999999998865

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.56  E-value=0.0053  Score=35.79  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+++..+  .....+++|+|-|+|.++..+++++|+
T Consensus        22 lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~~~   55 (170)
T PF05175_consen   22 LLLDNLP--KHKGGRVLDLGCGSGVISLALAKRGPD   55 (170)
T ss_dssp             HHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTSTC
T ss_pred             HHHHHHh--hccCCeEEEecCChHHHHHHHHHhCCC
Confidence            4555555  336789999999999999999999885

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=96.53  E-value=0.0038  Score=37.13  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=22.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+++|||-|.|.++..+++++|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~   40 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPD   40 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCC
Confidence            4579999999999999999999985

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.50  E-value=0.0056  Score=40.29  Aligned_cols=35  Identities=14%  Similarity=0.142  Sum_probs=27.6

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .-+++..+  .....+|+|+|.|+|.++..+++++|+
T Consensus       218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~  252 (378)
T PRK15001        218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQ  252 (378)
T ss_pred             HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCC
Confidence            34566666  333469999999999999999999985

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.48  E-value=0.008  Score=37.12  Aligned_cols=35  Identities=11%  Similarity=0.251  Sum_probs=28.8

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++..+  .....+|+|||.|.|.++..++++.+
T Consensus        18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~   52 (253)
T TIGR00755        18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK   52 (253)
T ss_pred             HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC
Confidence            445666666  66778999999999999999998875

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.46  E-value=0.0054  Score=34.79  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=20.7

Q ss_pred             hCCCceeEeecCCccHHHHHHHH
Q 047240           45 FKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      -.+..+|||+|+|.|+++..+..
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~   45 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAH   45 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHH
Confidence            36678999999999999999988

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=96.45  E-value=0.0059  Score=37.91  Aligned_cols=36  Identities=17%  Similarity=0.292  Sum_probs=32.5

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      +..++...+  ......|||+|-|+|+...-|++++|+
T Consensus        19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~   54 (257)
T COG4106          19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPD   54 (257)
T ss_pred             HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCC
Confidence            467888888  788999999999999999999999995

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.44  E-value=0.0067  Score=35.97  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      +++..+  .....+|+|||.|+|.++..+++..|
T Consensus        32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~   63 (196)
T PRK07402         32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCP   63 (196)
T ss_pred             HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCC
Confidence            455555  45667999999999999999987765

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=96.40  E-value=0.007  Score=40.06  Aligned_cols=33  Identities=18%  Similarity=0.102  Sum_probs=26.4

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      +++.+.  -.....+||||-|+|.++..+++++|+
T Consensus       114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~  146 (390)
T PRK14121        114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPN  146 (390)
T ss_pred             HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCC
Confidence            444444  344579999999999999999999985

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.39  E-value=0.0098  Score=37.23  Aligned_cols=35  Identities=9%  Similarity=0.214  Sum_probs=27.9

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++..+  .....+|+|||.|+|.++..++++.+
T Consensus        31 ~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~   65 (272)
T PRK00274         31 LDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA   65 (272)
T ss_pred             HHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC
Confidence            345666666  55667999999999999999998765

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.34  E-value=0.0079  Score=34.93  Aligned_cols=32  Identities=9%  Similarity=0.370  Sum_probs=26.2

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++..+  .....+++|||.|.|.++..++++
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~   34 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER   34 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc
Confidence            35666666  566779999999999999999876

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=96.28  E-value=0.0087  Score=38.43  Aligned_cols=24  Identities=21%  Similarity=0.237  Sum_probs=21.1

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||.|+|.++..+++..|
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~  145 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGA  145 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCC
Confidence            457999999999999999988765

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.22  E-value=0.014  Score=35.94  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=19.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|||+|+|.++..+++..
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g   66 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELG   66 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcC
Confidence            45799999999999999998753

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.21  E-value=0.023  Score=34.06  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|.++..++++.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~   85 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG   85 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC
Confidence            345799999999999999888754

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=96.17  E-value=0.01  Score=35.60  Aligned_cols=25  Identities=16%  Similarity=0.211  Sum_probs=21.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ....+||||-|.|.++.++++++|+
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd   41 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPD   41 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTT
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCC
Confidence            3459999999999999999999996

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=96.13  E-value=0.012  Score=37.73  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=30.0

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+-+++.++  ......|+|+|-|.|-+.+.+++.+|+
T Consensus       147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~  182 (300)
T COG2813         147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQ  182 (300)
T ss_pred             HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCC
Confidence            356778888  444559999999999999999999994

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.08  E-value=0.011  Score=35.27  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=26.5

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+.+++.++  .....+|+|||.|+|..+..++++
T Consensus        19 ~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~   51 (197)
T PRK11207         19 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN   51 (197)
T ss_pred             hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC
Confidence            356677776  555689999999999999998875

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.99  E-value=0.037  Score=33.90  Aligned_cols=49  Identities=16%  Similarity=0.171  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHhcc------hhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           18 LESIFYDAMIADS------ELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        18 ~~~~F~~~M~~~~------~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+.|.++-..+.      ...+..+++..+  .....+|+|||.|+|.++..+.+.
T Consensus         9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~   63 (251)
T PRK10258          9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER   63 (251)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc
Confidence            3456666655432      223445566665  345679999999999998887653

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.97  E-value=0.024  Score=34.17  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=25.7

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+++..+  .....+|+|||.|+|.++..+++..+
T Consensus        68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~  100 (215)
T TIGR00080        68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVG  100 (215)
T ss_pred             HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhC
Confidence            4455555  55678999999999999998887653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=95.95  E-value=0.03  Score=33.47  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.3

Q ss_pred             CceeEeecCCccHHHHHHHHhcCC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+|+|||.|+|..+..+++++|.
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~   69 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPE   69 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCC
Confidence            578999999999999999987763

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=95.93  E-value=0.016  Score=34.77  Aligned_cols=32  Identities=16%  Similarity=0.071  Sum_probs=25.2

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      +.+.|.   ....+|+|||-|+|..+..+++.+|+
T Consensus        33 ~~~~~~---~~~~~VLDiGcGtG~~~~~la~~~p~   64 (202)
T PRK00121         33 WAELFG---NDAPIHLEIGFGKGEFLVEMAKANPD   64 (202)
T ss_pred             HHHHcC---CCCCeEEEEccCCCHHHHHHHHHCCC
Confidence            444444   24679999999999999999988774

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=95.92  E-value=0.018  Score=34.09  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=26.0

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .++....  .....+|+|||.|.|..+..+++++|
T Consensus        30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~   62 (223)
T TIGR01934        30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAP   62 (223)
T ss_pred             HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcC
Confidence            3444444  34668999999999999999999887

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=95.92  E-value=0.018  Score=37.36  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=26.6

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+++.++  .....+|+|+|.|.|.++..+++++|+
T Consensus       186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~  220 (342)
T PRK09489        186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPK  220 (342)
T ss_pred             HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCC
Confidence            34455555  233458999999999999999999883

>PRK08317 hypothetical protein; Provisional

Probab=95.90  E-value=0.021  Score=34.04  Aligned_cols=32  Identities=28%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+++..+  .....+|+|||.|+|.++..+++.+
T Consensus        10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~   41 (241)
T PRK08317         10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRV   41 (241)
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhc
Confidence            3455555  5667899999999999999999876

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.89  E-value=0.021  Score=35.50  Aligned_cols=34  Identities=15%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|||.|.|.++..++++.
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~   51 (258)
T PRK14896         18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA   51 (258)
T ss_pred             HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC
Confidence            445666665  5567899999999999999998864

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=95.76  E-value=0.023  Score=34.24  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=25.0

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .++...+  .....+|+|||.|+|..+..+++..
T Consensus        36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~   67 (231)
T TIGR02752        36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAV   67 (231)
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHh
Confidence            3455555  4556799999999999999998875

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=95.73  E-value=0.012  Score=36.61  Aligned_cols=24  Identities=33%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|+|.++..+++..+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g   74 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG   74 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC
Confidence            457999999999999999999875

>PRK04457 spermidine synthase; Provisional

Probab=95.71  E-value=0.015  Score=36.33  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.1

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+|+|||+|.|.++..+++.+|+
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~   90 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPD   90 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCC
Confidence            4568999999999999999998874

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=95.70  E-value=0.014  Score=34.84  Aligned_cols=23  Identities=39%  Similarity=0.655  Sum_probs=20.7

Q ss_pred             CceeEeecCCccHHHHHHHHhcC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+|+|||.|+|.++..+++..|
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~   57 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFP   57 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCC
Confidence            46899999999999999998876

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06202 hypothetical protein; Provisional

Probab=95.70  E-value=0.031  Score=33.92  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+..+|+|||.|+|.++..|++.
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~   81 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARW   81 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHH
Confidence            35579999999999998888753

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=95.64  E-value=0.045  Score=36.87  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             hhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhh--hCCCceeEeecCCccHHHHHHHHh
Q 047240            8 FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEV--FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus         8 ~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~--~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .||-+++||..-+.+.+|+..       .+.+.....  -....+|+|||.|+|-++...+++
T Consensus       152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A  207 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQA  207 (448)
T ss_dssp             HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHT
T ss_pred             cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHH
Confidence            467777888877777777632       222222200  113579999999999998776654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=95.63  E-value=0.03  Score=33.51  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=24.9

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ++...+  .....+|+|||.|+|.++..+++.+|
T Consensus        43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~   74 (239)
T PRK00216         43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVG   74 (239)
T ss_pred             HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcC
Confidence            444444  33457999999999999999998876

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=95.62  E-value=0.019  Score=32.64  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             CCceeEeecCCccHHHHHHHH-hcC
Q 047240           47 GLKSLVDVGGGTGTMARAIAT-GFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~-~~P   70 (71)
                      ...+|+|+|.|+|.++..+++ .+|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~   27 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNP   27 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTT
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCC
Confidence            457899999999999999994 444

...

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.60  E-value=0.012  Score=34.82  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||.|+|.++..+++.+|
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~   65 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARP   65 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCC
Confidence            357999999999999998887776

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03438 probable methyltransferase

Probab=95.53  E-value=0.029  Score=35.62  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|||+|.|+|.....|+++.|
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~   86 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALR   86 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhc
Confidence            346899999999999999988764

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=95.39  E-value=0.034  Score=34.31  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=22.4

Q ss_pred             CceeEeecCCccHHHHHHHHhcCC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+.+|+||=|.|.++.++++++|+
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~   72 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPE   72 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCC
Confidence            369999999999999999999996

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=95.36  E-value=0.027  Score=35.53  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+++..+  .....+|+|||.|-|.++..++++|
T Consensus        52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~   84 (273)
T PF02353_consen   52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY   84 (273)
T ss_dssp             HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred             HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc
Confidence            45566666  6778899999999999999999986

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.34  E-value=0.048  Score=33.09  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             CceeEeecCCccHHHHHHHHhcCC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+|+|+|.|+|.++..+++.+|+
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~  111 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPD  111 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCC
Confidence            458999999999999999998763

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.32  E-value=0.019  Score=36.69  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=21.0

Q ss_pred             ceeEeecCCccHHHHHHHHhcCC
Q 047240           49 KSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+|+|+|.|+|.++..+++.+|+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~  157 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD  157 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC
Confidence            58999999999999999998873

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.28  E-value=0.034  Score=33.13  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=24.8

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++.++  .....+|+|||.|+|..+..++++
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~   51 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA   51 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC
Confidence            45566665  445679999999999999988864

Part of a tellurite-reducing operon tehA and tehB

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.28  E-value=0.058  Score=32.57  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .++...+  .....+|+|||.|+|.++..+++..
T Consensus        67 ~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~   98 (212)
T PRK13942         67 IMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIV   98 (212)
T ss_pred             HHHHHcC--CCCcCEEEEECCcccHHHHHHHHhc
Confidence            4455555  5667899999999999998877653

>TIGR00452 methyltransferase, putative

Probab=95.27  E-value=0.051  Score=35.01  Aligned_cols=25  Identities=20%  Similarity=0.201  Sum_probs=20.9

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++...+
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~  144 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGA  144 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC
Confidence            3457999999999999988887665

Known examples to date are restricted to the proteobacteria.

>TIGR00740 methyltransferase, putative

Probab=95.26  E-value=0.028  Score=34.24  Aligned_cols=24  Identities=13%  Similarity=0.187  Sum_probs=20.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|..+..+++++
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~   75 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNI   75 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhc
Confidence            355789999999999999998864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=95.25  E-value=0.042  Score=34.76  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             eeEeecCCccHHHHHHHHhcCC
Q 047240           50 SLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        50 ~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      +++|+|-|+|..+.+++++.|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~  134 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD  134 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC
Confidence            7999999999999999999884

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.12  E-value=0.06  Score=31.69  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +.+.+. ......+|+|+|.|+|.++..+++++
T Consensus        23 ~~~~~~-~i~~g~~VLDiG~GtG~~~~~l~~~~   54 (188)
T TIGR00438        23 LNQKFK-LIKPGDTVLDLGAAPGGWSQVAVEQV   54 (188)
T ss_pred             HHHHhc-ccCCCCEEEEecCCCCHHHHHHHHHh
Confidence            344444 13556899999999999999988775

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=95.12  E-value=0.031  Score=35.31  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=21.4

Q ss_pred             CceeEeecCCccHHHHHHHHhcCC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+|+|+|.|+|.++..+++++|+
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~  145 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPE  145 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCC
Confidence            468999999999999999998773

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.06  E-value=0.052  Score=33.84  Aligned_cols=34  Identities=21%  Similarity=0.438  Sum_probs=26.9

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|||.|+|..+..+++++
T Consensus        41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~   74 (263)
T PTZ00098         41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY   74 (263)
T ss_pred             HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc
Confidence            455666666  6677899999999999988887654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.06  E-value=0.075  Score=31.87  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=20.5

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|||.|+|..+..+++..
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~   94 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAI   94 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhc
Confidence            3455799999999999998888764

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=94.88  E-value=0.061  Score=32.41  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=23.4

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .....+++|||-|+|.+..+.+..+|.
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~   58 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPS   58 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCC
Confidence            456679999999999999999987774

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=94.86  E-value=0.062  Score=32.49  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=24.4

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+.+.|. .+....+|+|||.|+|.++..++++.
T Consensus        41 ~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~   73 (209)
T PRK11188         41 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQI   73 (209)
T ss_pred             HHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHc
Confidence            3444444 13456799999999999999888875

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=94.84  E-value=0.087  Score=29.51  Aligned_cols=23  Identities=43%  Similarity=0.655  Sum_probs=19.9

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|.|.++..+.+.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~   43 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKR   43 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh
Confidence            46789999999999999988654

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=94.78  E-value=0.04  Score=33.89  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=19.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|..+..+++.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~   77 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRN   77 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHh
Confidence            35578999999999999988873

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.77  E-value=0.087  Score=32.50  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|+|.|+|..+..+++..|
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~  131 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERP  131 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCC
Confidence            456899999999999999998876

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=94.76  E-value=0.064  Score=36.01  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+++|||.|+|.++..+++++|+
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~  275 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPD  275 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCC
Confidence            3458999999999999999988763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=94.64  E-value=0.073  Score=35.57  Aligned_cols=34  Identities=18%  Similarity=0.201  Sum_probs=26.5

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+.+++..+  .....+|+|||.|+|.++..+++.+
T Consensus        26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~   59 (475)
T PLN02336         26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA   59 (475)
T ss_pred             hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC
Confidence            455666665  4456799999999999999998764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=94.62  E-value=0.06  Score=31.40  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+++|+|.|+|.++..+++..|
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~   42 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK   42 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC
Confidence            3446899999999999999988754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=94.62  E-value=0.099  Score=33.36  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=26.6

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|||-|.|.+...++++.
T Consensus        25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~   58 (294)
T PTZ00338         25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA   58 (294)
T ss_pred             HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC
Confidence            345666655  5566899999999999999998764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=94.50  E-value=0.044  Score=34.46  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=20.4

Q ss_pred             ceeEeecCCccHHHHHHHHhcC
Q 047240           49 KSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+|+|+|.|+|.++..+++.+|
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~  137 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP  137 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC
Confidence            5899999999999999999877

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=94.49  E-value=0.049  Score=33.89  Aligned_cols=35  Identities=14%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+++..+  ......|+|||.|.|.+...|++..
T Consensus        18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~   52 (262)
T PF00398_consen   18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG   52 (262)
T ss_dssp             HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc
Confidence            4567777777  6688999999999999999998764

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=94.48  E-value=0.059  Score=32.48  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||-|+|..+..+++..|
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~   66 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLP   66 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCC
Confidence            3557899999999999999988755

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=94.46  E-value=0.058  Score=33.62  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=20.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||-|+|.++..+++..|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~  108 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALP  108 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcc
Confidence            446899999999999999988765

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=94.43  E-value=0.097  Score=31.96  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=22.6

Q ss_pred             CCCc-eeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLK-SLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~-~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .... +|+.||-|+|+-+..+++++|+
T Consensus        23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~   49 (204)
T PF06080_consen   23 PDSGTRVLEIASGTGQHAVYFAQALPH   49 (204)
T ss_pred             CccCceEEEEcCCccHHHHHHHHHCCC
Confidence            3444 5999999999999999999995

The function of this family is unknown.

>PLN02366 spermidine synthase

Probab=94.34  E-value=0.056  Score=34.71  Aligned_cols=23  Identities=39%  Similarity=0.582  Sum_probs=19.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+..+|++||||.|..+.++++.
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~  112 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH  112 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC
Confidence            35689999999999999999864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=94.32  E-value=0.047  Score=37.16  Aligned_cols=23  Identities=17%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             ceeEeecCCccHHHHHHHHhcCC
Q 047240           49 KSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+|+|||.|+|.++..+++++|+
T Consensus       140 ~~VLDlG~GsG~iai~la~~~p~  162 (506)
T PRK01544        140 LNILELGTGSGCIAISLLCELPN  162 (506)
T ss_pred             CEEEEccCchhHHHHHHHHHCCC
Confidence            58999999999999999988774

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.31  E-value=0.14  Score=33.15  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|.++..+++..+
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~  103 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVG  103 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcC
Confidence            44567999999999999999988654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=94.26  E-value=0.15  Score=33.61  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=24.1

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +++..+  .....+|+|||.|.|.++..+++++
T Consensus       159 l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~  189 (383)
T PRK11705        159 ICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY  189 (383)
T ss_pred             HHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC
Confidence            444444  4566799999999999999988765

>PLN02244 tocopherol O-methyltransferase

Probab=94.26  E-value=0.1  Score=33.69  Aligned_cols=24  Identities=42%  Similarity=0.619  Sum_probs=20.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|.++..+++++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~  140 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY  140 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc
Confidence            345789999999999999998875

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=94.23  E-value=0.048  Score=34.42  Aligned_cols=43  Identities=26%  Similarity=0.313  Sum_probs=26.8

Q ss_pred             HHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           22 FYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        22 F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      |..+....+.... .++..+.  . ...+|+|||.|+|.++..+++.
T Consensus       138 FgtG~h~tt~l~l-~~l~~~~--~-~g~~VLDvGcGsG~lai~aa~~  180 (288)
T TIGR00406       138 FGTGTHPTTSLCL-EWLEDLD--L-KDKNVIDVGCGSGILSIAALKL  180 (288)
T ss_pred             ccCCCCHHHHHHH-HHHHhhc--C-CCCEEEEeCCChhHHHHHHHHc
Confidence            4444333333332 2344444  2 4489999999999999887764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=94.12  E-value=0.11  Score=34.75  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=25.2

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+++..+  .....+|+|||.|+|..+..+++.+
T Consensus       256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~  288 (475)
T PLN02336        256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF  288 (475)
T ss_pred             HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc
Confidence            44556555  4566799999999999988887754

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=94.09  E-value=0.16  Score=33.15  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||.|+|.++..+++++|
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~  136 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD  136 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC
Confidence            456999999999999999988765

>PRK00811 spermidine synthase; Provisional

Probab=94.05  E-value=0.061  Score=33.97  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      +..+|+|||||.|..+..+++.
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~   97 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKH   97 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcC
Confidence            4578999999999999999874

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=93.98  E-value=0.097  Score=32.94  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .++...+  .....+|+|||.|+|..+..++++
T Consensus       111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~  141 (287)
T PRK12335        111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL  141 (287)
T ss_pred             HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC
Confidence            3444444  334469999999999999988764

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=93.97  E-value=0.049  Score=35.02  Aligned_cols=44  Identities=30%  Similarity=0.307  Sum_probs=30.8

Q ss_pred             HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           21 IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        21 ~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .|..+-+..+.+.. .+++.+.   .+..+++|||-|+|.++++.++-
T Consensus       140 AFGTG~HpTT~lcL-~~Le~~~---~~g~~vlDvGcGSGILaIAa~kL  183 (300)
T COG2264         140 AFGTGTHPTTSLCL-EALEKLL---KKGKTVLDVGCGSGILAIAAAKL  183 (300)
T ss_pred             ccCCCCChhHHHHH-HHHHHhh---cCCCEEEEecCChhHHHHHHHHc
Confidence            44444444444443 4666666   47799999999999999998764

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=93.92  E-value=0.087  Score=32.71  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             CceeEeecCCccHHHHHHHHhcC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++|+|.|+|.++..++++.|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~  109 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD  109 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC
Confidence            35899999999999999998776

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=93.91  E-value=0.087  Score=33.06  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=26.1

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ++..|.. .....+|+|+|-|.|.++..+++++|
T Consensus        35 LL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~   67 (248)
T COG4123          35 LLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTE   67 (248)
T ss_pred             HHHhhcc-cccCCeEEEecCCcCHHHHHHhccCC
Confidence            4444432 44589999999999999999999876

>PRK05785 hypothetical protein; Provisional

Probab=93.85  E-value=0.073  Score=32.52  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             CceeEeecCCccHHHHHHHHhc
Q 047240           48 LKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+|+|||.|+|.++..+++++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~   73 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF   73 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc
Confidence            5799999999999999988764

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=93.82  E-value=0.19  Score=32.16  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+.+++...  +.+..+|+|||-|-|.++...+++|
T Consensus        61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y   94 (283)
T COG2230          61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY   94 (283)
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc
Confidence            456777777  8889999999999999999999887

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=93.76  E-value=0.12  Score=31.39  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+++..+  .....+|+|||.|+|.+++-+++-
T Consensus        63 ~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~l   93 (209)
T PF01135_consen   63 RMLEALD--LKPGDRVLEIGTGSGYQAALLAHL   93 (209)
T ss_dssp             HHHHHTT--C-TT-EEEEES-TTSHHHHHHHHH
T ss_pred             HHHHHHh--cCCCCEEEEecCCCcHHHHHHHHh
Confidence            4555555  567789999999999998887753

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=93.74  E-value=0.14  Score=30.45  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|+|.|+|.++..+++..
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~   62 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLV   62 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHh
Confidence            5567899999999999999987753

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.69  E-value=0.14  Score=33.23  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=21.2

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..++|+|||.|.|.++-.++++-|
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA  138 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA  138 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC
Confidence            457999999999999999988765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14968 putative methyltransferase; Provisional

Probab=93.66  E-value=0.12  Score=29.85  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+++|+|.|+|.++..++++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~   44 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN   44 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh
Confidence            45578999999999999998875

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=93.63  E-value=0.1  Score=32.22  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=17.9

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|.++..++++.
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~   69 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRV   69 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGS
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHC
Confidence            445699999999999999998764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=93.56  E-value=0.11  Score=27.85  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=18.6

Q ss_pred             ceeEeecCCccHHHHHHHHhc
Q 047240           49 KSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+|+|+|.|+|.++..+++..
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~   22 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG   22 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC
T ss_pred             CEEEEcCcchHHHHHHHHHHC
Confidence            479999999999999998764

...

>PRK04266 fibrillarin; Provisional

Probab=93.44  E-value=0.14  Score=31.52  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=22.3

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|+|-|+|.++..+++..|
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~   95 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVE   95 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcC
Confidence            55668999999999999999988764

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=93.42  E-value=0.08  Score=33.74  Aligned_cols=37  Identities=22%  Similarity=0.173  Sum_probs=25.6

Q ss_pred             HHHHHHhchhhhC--CCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFK--GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~--~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+-|-+.+.+.+.  ..-.++||+||+|..+-.|++.-+
T Consensus        85 HRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~  123 (296)
T KOG1540|consen   85 HRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVK  123 (296)
T ss_pred             hHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhc
Confidence            3345555553221  246999999999999999988643

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=93.32  E-value=0.087  Score=33.74  Aligned_cols=44  Identities=30%  Similarity=0.310  Sum_probs=28.1

Q ss_pred             HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           21 IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        21 ~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .|..+-+..+++.. .+++.+.   ....+|+|||-|+|.++++.++.
T Consensus       139 AFGTG~H~TT~lcl-~~l~~~~---~~g~~vLDvG~GSGILaiaA~kl  182 (295)
T PF06325_consen  139 AFGTGHHPTTRLCL-ELLEKYV---KPGKRVLDVGCGSGILAIAAAKL  182 (295)
T ss_dssp             SS-SSHCHHHHHHH-HHHHHHS---STTSEEEEES-TTSHHHHHHHHT
T ss_pred             cccCCCCHHHHHHH-HHHHHhc---cCCCEEEEeCCcHHHHHHHHHHc
Confidence            44444445555554 3455554   34479999999999999987764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.29  E-value=0.096  Score=35.86  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+++|||+|.|.+++.++++
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r  138 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLER  138 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhC
Confidence            45789999999999999999876

; GO: 0008168 methyltransferase activity

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=93.21  E-value=0.039  Score=34.12  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=22.1

Q ss_pred             CceeEeecCCccHHHHHHHHhcCC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      -..++|||-|.|-+++.|..+||+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPd   84 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPD   84 (249)
T ss_pred             cceEEeeccCccchhhhccccCcc
Confidence            368999999999999999999996

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=92.99  E-value=0.23  Score=30.22  Aligned_cols=33  Identities=15%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+++...  .....+++|+|-|.|....+.+-.+
T Consensus        32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~   64 (205)
T PF08123_consen   32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQT   64 (205)
T ss_dssp             HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred             HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc
Confidence            34556655  5667899999999999887766543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=92.92  E-value=0.13  Score=34.12  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=19.4

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+..+|++||||.|..+.++++.
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~  171 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKY  171 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhc
Confidence            34579999999999999988874

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=92.89  E-value=0.31  Score=29.41  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=18.4

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||.|+|.++..+++.
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~   69 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL   69 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc
Confidence            4578999999999998887764

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=92.81  E-value=0.27  Score=30.66  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||-|+|.++..+++++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~   95 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKV   95 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHh
Confidence            345799999999999998888764

>PRK03612 spermidine synthase; Provisional

Probab=92.58  E-value=0.17  Score=34.63  Aligned_cols=23  Identities=22%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      +.++|+|||||.|..+.++++ +|
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~-~~  319 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLK-YP  319 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHh-CC
Confidence            457899999999999999986 44

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=92.55  E-value=0.32  Score=30.05  Aligned_cols=24  Identities=38%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||-|+|.++..+++..
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g  141 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLG  141 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcC
Confidence            356799999999999988876643

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=92.53  E-value=0.18  Score=34.37  Aligned_cols=25  Identities=20%  Similarity=0.056  Sum_probs=23.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ....+||||-|.|.++.++++++|+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~  371 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPD  371 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCC
Confidence            4689999999999999999999996

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=92.38  E-value=0.64  Score=29.09  Aligned_cols=61  Identities=13%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             hhhhhhcCc--chHHHHHHHHHhc-chh-------------hHHHHHHhchhhhCCCceeEeecCCccH----HHHHHHH
Q 047240            8 FWDFVAAEP--NLESIFYDAMIAD-SEL-------------ITIVVIEDCKEVFKGLKSLVDVGGGTGT----MARAIAT   67 (71)
Q Consensus         8 ~f~~~~~~p--~~~~~F~~~M~~~-~~~-------------~~~~~~~~~d~~~~~~~~vvDvGGg~G~----~~~~l~~   67 (71)
                      +++++..++  +..+.|...+... +..             ..+.+++.-+  .....+|.|+|.|+|.    +++.+++
T Consensus        46 y~~~l~~~~~~~e~~~l~~~lti~~T~FfR~~~~~~~l~~~vlp~l~~~~~--~~~~~ri~d~GCgtGee~YslA~~l~e  123 (264)
T smart00138       46 YLELLTSHRGEEELAELLDLMTTNETRFFRESKHFEALEEKVLPLLIASRR--HGRRVRIWSAGCSTGEEPYSLAMLLAE  123 (264)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhcCCCcccCCcHHHHHHHHHHhHHHHHhcC--CCCCEEEEeccccCChHHHHHHHHHHH
Confidence            445555565  6677777777642 111             1111221111  2234699999999997    4555555


Q ss_pred             hcC
Q 047240           68 GFL   70 (71)
Q Consensus        68 ~~P   70 (71)
                      ..|
T Consensus       124 ~~~  126 (264)
T smart00138      124 TLP  126 (264)
T ss_pred             Hhh
Confidence            443

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=92.30  E-value=0.21  Score=29.53  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=18.6

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||.|+|.++..+++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~   34 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE   34 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc
Confidence            4468999999999999888764

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=92.27  E-value=0.47  Score=28.37  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||.|+|..+..+++.
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~   99 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHL   99 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHH
Confidence            445679999999999988766554

>TIGR00478 tly hemolysin TlyA family protein

Probab=92.13  E-value=0.41  Score=29.59  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=25.1

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++.++ ......+++|||-|+|.++..++++
T Consensus        63 L~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~   96 (228)
T TIGR00478        63 LKEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK   96 (228)
T ss_pred             HHHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc
Confidence            345566655 1235579999999999999998875

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=92.12  E-value=0.3  Score=29.86  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|+|-|.|+++..|++.
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~e   88 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKE   88 (227)
T ss_pred             cccceeeccCCchHHHHHHHHh
Confidence            3449999999999999999874

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=92.01  E-value=0.15  Score=34.05  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=20.2

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|+|.|+|.++..+++..
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~  319 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA  319 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC
Confidence            345799999999999999988753

>TIGR00417 speE spermidine synthase

Probab=91.98  E-value=0.21  Score=31.23  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=19.2

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +..+|++||+|.|.++..+++..
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~   94 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK   94 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC
Confidence            44599999999999998888653

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=91.93  E-value=0.41  Score=28.94  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=24.5

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..++...+  .....+++|+|.|.|..+.-|+++
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~   51 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ   51 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC
Confidence            45677777  556789999999999999988875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=91.76  E-value=0.18  Score=32.52  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=18.5

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+|+|||.|+|.++..++++
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~  165 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE  165 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC
Confidence            469999999999999988864

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=91.74  E-value=0.23  Score=30.09  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      +...+|+|+|-|.|.++..|.+.
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~   34 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE   34 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh
Confidence            35689999999999999988764

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=91.59  E-value=0.28  Score=30.37  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=19.5

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|||.|+|..+..+++..
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~   99 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRV   99 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence            3456799999999999887766653

>PHA03412 putative methyltransferase; Provisional

Probab=91.50  E-value=0.19  Score=31.49  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|+|-|+|.++..++++.+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~   72 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMM   72 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcc
Confidence            357999999999999999988643

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=91.22  E-value=0.55  Score=30.30  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=28.0

Q ss_pred             hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+++.-+  .....+|+.||.|+|.+...++++
T Consensus        46 v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~   79 (315)
T KOG0820|consen   46 VIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA   79 (315)
T ss_pred             HHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh
Confidence            3456666666  677889999999999999999886

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=91.03  E-value=0.46  Score=27.65  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=25.3

Q ss_pred             HHHHHHhchhhhC--CCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFK--GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~--~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..++.+.|+. +.  ...+++|+|.++|.++..++++.
T Consensus         9 L~ei~~~~~~-~~~~~~~~vlDlG~aPGGws~~~~~~~   45 (181)
T PF01728_consen    9 LYEIDEKFKI-FKPGKGFTVLDLGAAPGGWSQVLLQRG   45 (181)
T ss_dssp             HHHHHHTTSS-S-TTTTEEEEEET-TTSHHHHHHHTST
T ss_pred             HHHHHHHCCC-CCcccccEEEEcCCcccceeeeeeecc
Confidence            3456677761 22  45899999999999999988764

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=90.94  E-value=0.37  Score=32.21  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=23.7

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +....+  .....+|+|+|.|+|..+..+++..
T Consensus       242 v~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~  272 (444)
T PRK14902        242 VAPALD--PKGGDTVLDACAAPGGKTTHIAELL  272 (444)
T ss_pred             HHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence            334444  3455799999999999999998865

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=90.81  E-value=0.35  Score=29.90  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=35.5

Q ss_pred             CChhhhhhcCcchHHHHHHHHHh----cchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240            6 KKFWDFVAAEPNLESIFYDAMIA----DSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus         6 ~~~f~~~~~~p~~~~~F~~~M~~----~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...++.+.++|+.-..++.+-+.    |.....+.+++... .-....+|.|.|-|.+.++.++.+.
T Consensus        28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~~   93 (219)
T PF05148_consen   28 EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPNK   93 (219)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S-
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhcccC
Confidence            45677788899887777776654    33334445555444 1234579999999999999877543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.65  E-value=0.31  Score=30.13  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=18.0

Q ss_pred             CceeEeecCCccHHHHHHHHhc
Q 047240           48 LKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .-+||++|+|.|.++..|++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l   40 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYL   40 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHH
Confidence            3699999999999999998754

; PDB: 4F3N_A 1ZKD_B.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=90.51  E-value=0.4  Score=31.94  Aligned_cols=26  Identities=12%  Similarity=-0.008  Sum_probs=21.9

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|+|-|+|..+..+++..|
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~  267 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAP  267 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcC
Confidence            34557999999999999999988765

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=90.43  E-value=0.49  Score=31.90  Aligned_cols=25  Identities=40%  Similarity=0.947  Sum_probs=21.1

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +-+..+|||||-|.|+++.-+.-.|
T Consensus       151 f~gi~~vvD~GaG~G~LSr~lSl~y  175 (476)
T KOG2651|consen  151 FTGIDQVVDVGAGQGHLSRFLSLGY  175 (476)
T ss_pred             hcCCCeeEEcCCCchHHHHHHhhcc
Confidence            7789999999999999998765443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=90.39  E-value=0.32  Score=29.05  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=19.0

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|+|.|+|.++..+++..
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~   67 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG   67 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC
Confidence            35799999999999988887643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=90.11  E-value=0.31  Score=31.52  Aligned_cols=21  Identities=24%  Similarity=0.446  Sum_probs=17.8

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+|+|||.|.|.++..+++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~~  152 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM  152 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc
Confidence            358999999999999888753

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=89.98  E-value=0.74  Score=29.03  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=19.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .-.+|+|+|.|.|+.+-++.+.+|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~   56 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWP   56 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhc
Confidence            346899999999998888877665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK14967 putative methyltransferase; Provisional

Probab=89.95  E-value=0.57  Score=28.34  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=19.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|+|-|+|.++..+++.
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~   57 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA   57 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc
Confidence            44579999999999999888764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=89.72  E-value=1  Score=28.54  Aligned_cols=35  Identities=11%  Similarity=0.280  Sum_probs=28.4

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++.-+  -+...+|+.||-|.|++...|+++..
T Consensus        19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~   53 (259)
T COG0030          19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA   53 (259)
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC
Confidence            456777766  55678999999999999999998753

>PLN02672 methionine S-methyltransferase

Probab=89.68  E-value=0.4  Score=35.75  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=21.0

Q ss_pred             ceeEeecCCccHHHHHHHHhcCC
Q 047240           49 KSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+|+|||-|+|.++..+++++|+
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~  142 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLP  142 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCC
Confidence            58999999999999999998873

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=89.55  E-value=0.46  Score=30.77  Aligned_cols=25  Identities=12%  Similarity=0.135  Sum_probs=22.6

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+||||.+|+|.+...+++++|.
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~  159 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPE  159 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCC
Confidence            4679999999999999999999984

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=89.49  E-value=0.62  Score=30.78  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=25.3

Q ss_pred             HHHHHhchhhhCCCceeEeecCCcc-----HHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTG-----TMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G-----~~~~~l~~~~P   70 (71)
                      +..++.+| .+.++-.+.++|||+|     .++..|.+.||
T Consensus        90 r~~~E~cd-~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~  129 (379)
T cd02190          90 RKAAEKCD-SLQSFFILHSLGGGTGSGLGTYVLELLADEFP  129 (379)
T ss_pred             HHHHhhCc-CcceEEEEeecCCCcchhHHHHHHHHHHHhcC
Confidence            44566676 4667899999999998     45555666666

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=89.46  E-value=0.48  Score=28.23  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=20.6

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++|++.|+|.++.+++++..
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga   72 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA   72 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC
Confidence            457899999999999999988653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=89.44  E-value=0.36  Score=30.28  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.2

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||-|-|.++..+++.
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~   80 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL   80 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC
Confidence            4579999999999999998874

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=89.35  E-value=2.5  Score=25.97  Aligned_cols=26  Identities=19%  Similarity=0.143  Sum_probs=21.8

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+..+++|||-|+|.-+..+++..|
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~   91 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALP   91 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCC
Confidence            45678999999999998888887655

>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]

Probab=88.85  E-value=0.42  Score=32.74  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=17.7

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGT   58 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~   58 (71)
                      .-.+...++  +.+...++|||||+
T Consensus       118 ~lGv~~~~~--~~~~~lv~DIGGGS  140 (492)
T COG0248         118 YLGVASTLP--RKGDGLVIDIGGGS  140 (492)
T ss_pred             HHHHHhcCC--CCCCEEEEEecCCe
Confidence            345667777  46788999999986

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=88.82  E-value=0.98  Score=25.15  Aligned_cols=21  Identities=24%  Similarity=0.572  Sum_probs=16.0

Q ss_pred             CCCceeEeecCCccHHHHHHH
Q 047240           46 KGLKSLVDVGGGTGTMARAIA   66 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~   66 (71)
                      .....+||||-|.|-+.--|.
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~   77 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILN   77 (112)
T ss_pred             CCCCceEEccCCchHHHHHHH
Confidence            457799999999997655443

; GO: 0008168 methyltransferase activity

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=88.53  E-value=0.57  Score=31.13  Aligned_cols=24  Identities=29%  Similarity=0.428  Sum_probs=20.3

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+..+|+|+|.|+|.++..+++.
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~  313 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQ  313 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHh
Confidence            345579999999999999998865

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=88.46  E-value=1.2  Score=28.62  Aligned_cols=35  Identities=26%  Similarity=0.111  Sum_probs=28.2

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++.+.  -....++||++=|.|..+..|+++.|
T Consensus         8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~   42 (296)
T PRK00050          8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLG   42 (296)
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCC
Confidence            356666665  34557999999999999999999886

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.42  E-value=0.95  Score=28.19  Aligned_cols=30  Identities=27%  Similarity=0.458  Sum_probs=21.3

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHH
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIA   66 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~   66 (71)
                      +++..+..+.....++|||+|+|.+...+.
T Consensus        72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~  101 (237)
T KOG1661|consen   72 ALEYLDDHLQPGASFLDVGSGSGYLTACFA  101 (237)
T ss_pred             HHHHHHHhhccCcceeecCCCccHHHHHHH
Confidence            334333334556799999999999887765

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.27  E-value=1.3  Score=27.22  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=23.1

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      .++...+  .....+|++||.|+|..++-+++
T Consensus        63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~   92 (209)
T COG2518          63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLAR   92 (209)
T ss_pred             HHHHHhC--CCCCCeEEEECCCchHHHHHHHH
Confidence            3455555  56678999999999998877765

>PHA03411 putative methyltransferase; Provisional

Probab=88.27  E-value=0.62  Score=29.81  Aligned_cols=23  Identities=13%  Similarity=0.248  Sum_probs=19.6

Q ss_pred             CceeEeecCCccHHHHHHHHhcC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+|+|+|-|+|.++..++++.|
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~   87 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCK   87 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCC
Confidence            46899999999999998887653

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=88.19  E-value=1.3  Score=27.31  Aligned_cols=63  Identities=11%  Similarity=0.268  Sum_probs=38.2

Q ss_pred             CChhhhhhc---CcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240            6 KKFWDFVAA---EPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus         6 ~~~f~~~~~---~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ++.+.|+.+   ||-..+.=...-.+.+....-++-+.|. .++...+|+|||-..|.-+.-..++.
T Consensus        26 ~s~~~wl~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~-~l~p~~~VlD~G~APGsWsQVavqr~   91 (232)
T KOG4589|consen   26 KSLHRWLTRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRV   91 (232)
T ss_pred             ccHHHHHHHhccCHHHHHHHHhhhhhhhhhhheeehhhcc-ccCCCCEEEEccCCCChHHHHHHHhh
Confidence            567888864   5544333222233333333334445665 34567899999999999887666554

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=87.92  E-value=0.75  Score=29.24  Aligned_cols=24  Identities=38%  Similarity=0.565  Sum_probs=20.1

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++|||-|.|.+...++..+.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~  117 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK  117 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc
Confidence            457899999999999998876553

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PTZ00146 fibrillarin; Provisional

Probab=87.35  E-value=0.78  Score=29.54  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|+|.|+|.++..+++..
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiV  154 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLV  154 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHh
Confidence            4455799999999999999988764

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=87.32  E-value=1.2  Score=28.42  Aligned_cols=22  Identities=27%  Similarity=0.213  Sum_probs=19.1

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|+|.|+|.++..++++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~  194 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP  194 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc
Confidence            3479999999999999998874

>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised

Probab=87.31  E-value=2.4  Score=28.57  Aligned_cols=45  Identities=20%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             HHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccH-HHHHHHHhcC
Q 047240           24 DAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT-MARAIATGFL   70 (71)
Q Consensus        24 ~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~-~~~~l~~~~P   70 (71)
                      .+|...+......+.+.|+  -....=|+-+||+.|+ ++....++.|
T Consensus        72 ~ai~~M~~ga~~~v~~l~~--~g~i~Gvi~~GGs~GT~lat~aMr~LP  117 (403)
T PF06792_consen   72 EAIEAMARGAARFVSDLYD--EGKIDGVIGIGGSGGTALATAAMRALP  117 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHh--cCCccEEEEecCCccHHHHHHHHHhCC
Confidence            3444444545556677777  5667889999999998 5556666655

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=87.19  E-value=1.6  Score=27.39  Aligned_cols=46  Identities=13%  Similarity=0.346  Sum_probs=27.4

Q ss_pred             HHHHHHHhcchhh----HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           21 IFYDAMIADSELI----TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        21 ~F~~~M~~~~~~~----~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .|...|...++..    +..++...+  .....+||+.|-|+|.++..|++.
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~   61 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARA   61 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHH
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHH
Confidence            4666666555543    334555556  677899999999999999999975

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=87.09  E-value=0.7  Score=30.34  Aligned_cols=22  Identities=18%  Similarity=0.151  Sum_probs=18.7

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|++.|+|.++..++.+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~  254 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP  254 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc
Confidence            3468999999999999988754

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=87.00  E-value=2  Score=25.91  Aligned_cols=22  Identities=14%  Similarity=0.113  Sum_probs=17.9

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++|+|.|+|.++.+.+.+
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr   74 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSR   74 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHc
Confidence            3468999999999999876544

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=86.98  E-value=0.61  Score=29.49  Aligned_cols=23  Identities=43%  Similarity=0.663  Sum_probs=18.1

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +..+++|||-|+|+.+..+++.|
T Consensus        33 ~h~~a~DvG~G~Gqa~~~iae~~   55 (261)
T KOG3010|consen   33 GHRLAWDVGTGNGQAARGIAEHY   55 (261)
T ss_pred             CcceEEEeccCCCcchHHHHHhh
Confidence            44599999999997777776654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=86.83  E-value=0.79  Score=29.20  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+..+..++..|-....++|||-..|.+...|++.+
T Consensus        45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F   80 (288)
T KOG2899|consen   45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDF   80 (288)
T ss_pred             CChhhhhccccccCcceeEeccCCcchhHHHHHHhh
Confidence            345666666557778999999999999999999876

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=86.72  E-value=0.8  Score=30.16  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      -..++|+|||-|+|.++.--+++-
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG   82 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG   82 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC
Confidence            356899999999999998777654

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=86.04  E-value=1.1  Score=29.12  Aligned_cols=26  Identities=19%  Similarity=0.477  Sum_probs=21.5

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .....++|+|-|+|..+..++..-|+
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~~  172 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLPQ  172 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCCC
Confidence            33458999999999999999987664

>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

Probab=85.92  E-value=1.2  Score=29.97  Aligned_cols=34  Identities=15%  Similarity=0.352  Sum_probs=24.0

Q ss_pred             HHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P   70 (71)
                      ..++..| .+.++-.+-.+|||+|.     ++..|...||
T Consensus       122 ~~~E~cd-~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~  160 (431)
T cd02188         122 READGSD-SLEGFVLCHSIAGGTGSGMGSYLLERLNDRYP  160 (431)
T ss_pred             HHHhcCC-CcceeEEEecCCCCcchhHHHHHHHHHHhHcC
Confidence            3445566 36788999999999984     4555666666

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=85.69  E-value=1  Score=29.95  Aligned_cols=26  Identities=12%  Similarity=0.052  Sum_probs=21.4

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|+|-|+|..+..+++..|
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~  261 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAP  261 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcC
Confidence            34457999999999999999887654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=85.28  E-value=3.9  Score=27.28  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=18.3

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...||.+|.|+|+++..|++.
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~   98 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRT   98 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHH
Confidence            357999999999999988875

>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

Probab=85.02  E-value=1.8  Score=27.78  Aligned_cols=35  Identities=26%  Similarity=0.537  Sum_probs=24.3

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P   70 (71)
                      +..++..| ...++-.+.++|||+|.     ++..+...||
T Consensus        80 r~~~E~cD-~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~  119 (328)
T cd00286          80 RKEAEECD-SLQGFFITHSLGGGTGSGLGPVLAERLKDEYP  119 (328)
T ss_pred             HHHHHhCC-CccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence            44556666 35678999999998884     4455556665

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=84.17  E-value=1.3  Score=26.98  Aligned_cols=24  Identities=33%  Similarity=0.331  Sum_probs=19.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      -..++|+|.|-|+|.++.+.+-.-
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lG   67 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLG   67 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcC
Confidence            456799999999999998876543

>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=83.97  E-value=2.2  Score=28.09  Aligned_cols=26  Identities=31%  Similarity=0.682  Sum_probs=20.4

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccH
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGT   60 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~   60 (71)
                      .+..++.+| .+.++..+.++|||+|.
T Consensus        79 ir~~~E~cD-~l~gf~i~~sl~GGTGS  104 (382)
T cd06059          79 IRKQVEKCD-SLQGFQITHSLGGGTGS  104 (382)
T ss_pred             HHHHHHhCC-CcCceEEEEecCCCcch
Confidence            356677888 46788999999998874

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=83.93  E-value=2.7  Score=25.77  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             HHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           23 YDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        23 ~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+.+..-..++.+.|. .+.+...|||+|-..|.-+.-+.++
T Consensus        22 ~~gyRSRAa~KL~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~   66 (205)
T COG0293          22 KEGYRSRAAYKLLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKK   66 (205)
T ss_pred             hccccchHHHHHHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHH
Confidence            33334445555667888885 5788899999999999988877664

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=83.91  E-value=2.9  Score=25.32  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             chhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           30 SELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        30 ~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      |...+..+++..+  ++..--|+.+|=|+|-+..+|+++
T Consensus        33 Ss~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~   69 (194)
T COG3963          33 SSILARKMASVID--PESGLPVLELGPGTGVITKAILSR   69 (194)
T ss_pred             cHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhc
Confidence            4445778888898  888889999999999999999975

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=83.43  E-value=2.7  Score=25.56  Aligned_cols=22  Identities=9%  Similarity=-0.182  Sum_probs=19.3

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++|+|-|.|..+..|+++
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~   55 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ   55 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC
Confidence            4579999999999999999864

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=83.39  E-value=1.6  Score=29.25  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=20.2

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|+|.|+|..+..+++..
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~  274 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELM  274 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHh
Confidence            345799999999999999888764

>PRK02399 hypothetical protein; Provisional

Probab=83.32  E-value=5.1  Score=27.10  Aligned_cols=44  Identities=25%  Similarity=0.273  Sum_probs=27.8

Q ss_pred             HHHhcchhhHHHHHHhchhhhCCCceeEeecCCccH-HHHHHHHhcC
Q 047240           25 AMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT-MARAIATGFL   70 (71)
Q Consensus        25 ~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~-~~~~l~~~~P   70 (71)
                      +|+..+......+.+.|.  -....-|+-+||+.|+ ++..+.++.|
T Consensus        75 ai~~M~~ga~~~v~~L~~--~g~i~gviglGGs~GT~lat~aMr~LP  119 (406)
T PRK02399         75 AMAAMAEGAAAFVRELYE--RGDVAGVIGLGGSGGTALATPAMRALP  119 (406)
T ss_pred             HHHHHHHHHHHHHHHHHh--cCCccEEEEecCcchHHHHHHHHHhCC
Confidence            444444444334445666  4568889999999998 4555556555

>PTZ00387 epsilon tubulin; Provisional

Probab=83.24  E-value=2  Score=29.28  Aligned_cols=35  Identities=23%  Similarity=0.506  Sum_probs=24.1

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P   70 (71)
                      +..++..| .+.++-.+..+|||+|.     ++..|...||
T Consensus       122 r~~~E~cD-~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~  161 (465)
T PTZ00387        122 RRQVEQCD-SLQSFFLMHSLGGGTGSGLGTRILGMLEDEFP  161 (465)
T ss_pred             HHHHHhcc-CcceEEEEeecCCCcchhHHHHHHHHHHHhcc
Confidence            45566676 46678899999999984     3444555555

>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3

Probab=83.15  E-value=1.6  Score=27.39  Aligned_cols=13  Identities=31%  Similarity=0.698  Sum_probs=10.6

Q ss_pred             CCCceeEeecCCc
Q 047240           46 KGLKSLVDVGGGT   58 (71)
Q Consensus        46 ~~~~~vvDvGGg~   58 (71)
                      .+...++|||||+
T Consensus       111 ~~~~lviDIGGGS  123 (285)
T PF02541_consen  111 DKNGLVIDIGGGS  123 (285)
T ss_dssp             TSSEEEEEEESSE
T ss_pred             cCCEEEEEECCCc
Confidence            4567999999985

6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=82.78  E-value=4.7  Score=27.19  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=15.9

Q ss_pred             CCceeEeecCCccHHHHHHH
Q 047240           47 GLKSLVDVGGGTGTMARAIA   66 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~   66 (71)
                      ..+.|||||-|+|.++.-.+
T Consensus       177 ~~kiVlDVGaGSGILS~FAa  196 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAA  196 (517)
T ss_pred             CCcEEEEecCCccHHHHHHH
Confidence            34899999999999876443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=82.68  E-value=2.3  Score=26.53  Aligned_cols=24  Identities=13%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|+|.|+|..+..+++..
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~   93 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALM   93 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHc
Confidence            345789999999999999888754

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=82.66  E-value=3  Score=26.79  Aligned_cols=30  Identities=13%  Similarity=0.119  Sum_probs=21.9

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      .++....  +....+|+|+|-|+|.++.+.+.
T Consensus       173 ~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~  202 (329)
T TIGR01177       173 AMVNLAR--VTEGDRVLDPFCGTGGFLIEAGL  202 (329)
T ss_pred             HHHHHhC--CCCcCEEEECCCCCCHHHHHHHH
Confidence            3444444  55667999999999999887654

This family is found exclusively in the Archaea.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=82.02  E-value=2.1  Score=26.21  Aligned_cols=28  Identities=14%  Similarity=0.275  Sum_probs=21.5

Q ss_pred             hchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           40 DCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        40 ~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+  -..+..+++||+|.|.+...|+.++
T Consensus        38 aLp--~~ry~~alEvGCs~G~lT~~LA~rC   65 (201)
T PF05401_consen   38 ALP--RRRYRRALEVGCSIGVLTERLAPRC   65 (201)
T ss_dssp             HHT--TSSEEEEEEE--TTSHHHHHHGGGE
T ss_pred             hcC--ccccceeEecCCCccHHHHHHHHhh
Confidence            455  5677899999999999999998764

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=81.83  E-value=2.2  Score=27.78  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=18.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++|||-|+|.....++.+.|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~  137 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY  137 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC
Confidence            357899999999987777766654

>COG5023 Tubulin [Cytoskeleton]

Probab=81.76  E-value=3  Score=28.13  Aligned_cols=37  Identities=22%  Similarity=0.450  Sum_probs=27.8

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcCC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFLI   71 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~   71 (71)
                      ++..++..| .+.++..+=-+|||+|.     ++.+|+..||.
T Consensus       120 IrreAd~cD-~LqGF~l~HS~gGGTGSG~GslLLerl~~eypk  161 (443)
T COG5023         120 IRREADGCD-GLQGFLLLHSLGGGTGSGLGSLLLERLREEYPK  161 (443)
T ss_pred             HHHHhhcCc-cccceeeeeeccCcCcccHHHHHHHHHHHhcch
Confidence            345567777 57888999999999986     56677777773

>PRK04148 hypothetical protein; Provisional

Probab=81.66  E-value=3.5  Score=23.60  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             HHHHhchhhhCCCceeEeecCCccH-HHHHHHH
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGT-MARAIAT   67 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~-~~~~l~~   67 (71)
                      -+.+.++  -....+++|||=|.|. ++..+.+
T Consensus         7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~   37 (134)
T PRK04148          7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKE   37 (134)
T ss_pred             HHHHhcc--cccCCEEEEEEecCCHHHHHHHHH
Confidence            3555555  2334689999988996 7666664

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=81.45  E-value=3.8  Score=26.03  Aligned_cols=41  Identities=12%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             HHhcchh----hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           26 MIADSEL----ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        26 M~~~~~~----~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      |...++.    .+..++...+  .+...+|+|.|-|+|.++..|++.
T Consensus        71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~  115 (256)
T COG2519          71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARA  115 (256)
T ss_pred             CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHh
Confidence            5554443    2334555555  778899999999999999999863

>PLN03075 nicotianamine synthase; Provisional

Probab=81.39  E-value=3.8  Score=26.49  Aligned_cols=24  Identities=13%  Similarity=0.058  Sum_probs=16.1

Q ss_pred             CCceeEeecCCccHHHHH--HHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARA--IATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~--l~~~~P   70 (71)
                      ..++|+|||-|.|-+...  .++.+|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p  148 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLP  148 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCC
Confidence            568999999998844333  334455

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=81.33  E-value=1.5  Score=29.98  Aligned_cols=12  Identities=33%  Similarity=0.758  Sum_probs=9.7

Q ss_pred             CCceeEeecCCc
Q 047240           47 GLKSLVDVGGGT   58 (71)
Q Consensus        47 ~~~~vvDvGGg~   58 (71)
                      ....|+|||||+
T Consensus       132 ~~~lviDIGGGS  143 (496)
T PRK11031        132 DQRLVVDIGGAS  143 (496)
T ss_pred             CCEEEEEecCCe
Confidence            346899999986

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=81.32  E-value=4.7  Score=25.69  Aligned_cols=30  Identities=23%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      +++..-+  ...+.+++|+|-|+|-...+|..
T Consensus       116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~  145 (287)
T COG4976         116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRD  145 (287)
T ss_pred             HHHHhcc--CCccceeeecccCcCcccHhHHH
Confidence            3344444  34589999999999988777653

>PLN02823 spermine synthase

Probab=80.62  E-value=2  Score=28.09  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=19.1

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+-||||.|..+.++++..
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~  125 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHK  125 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCC
Confidence            44678899999999999998744

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=80.60  E-value=2.5  Score=28.36  Aligned_cols=25  Identities=20%  Similarity=0.171  Sum_probs=20.3

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|+|-|+|..+..+++..
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~  259 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELM  259 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHc
Confidence            3455789999999999988888754

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=80.30  E-value=4.4  Score=24.71  Aligned_cols=22  Identities=9%  Similarity=-0.165  Sum_probs=19.2

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|+|.|.|..+..|+++
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~   58 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ   58 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC
Confidence            4579999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		2e-12
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		9e-12
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		5e-10
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		2e-05
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		2e-05
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		2e-05
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		7e-05

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 3   TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMA 62
           T    FWDF+   P   + F DAM +DS+LI +  + DC  VF GL+S+VDVGGGTGT A
Sbjct: 145 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTA 203
Query: 63  RAIATGF 69
           + I   F
Sbjct: 204 KIICETF 210

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 3   TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMA 62
           T    FWDF+   P   + F DA  +DS+LI +  + DC  VF GL+S+VDVGGGTGT A
Sbjct: 145 TLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTA 203
Query: 63  RAIATGF 69
           + I   F
Sbjct: 204 KIICETF 210

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 8   FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67
            W+F+   P   +++ DA+ +DS++I +  ++DC  VF+GL+S+VDVGGG GT  + I  
Sbjct: 155 LWEFLNKNPEYNTLYNDALASDSKMINLA-MKDCNLVFEGLESIVDVGGGNGTTGKIICE 213
Query: 68  GF 69
            F
Sbjct: 214 TF 215

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 1   QTTFR----KKFWDFVA--AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDV 54
           QT F     + FWDF+   +E +  S+F DAM +DS +  +V+ E+ K VF+GL+SLVDV
Sbjct: 138 QTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQEN-KRVFEGLESLVDV 196

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 1   QTTFR----KKFWDFVA--AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDV 54
           QT F     + FWDF+   +E +  S+F DAM +DS +  +V+ E+ K VF+GL+SLVDV
Sbjct: 141 QTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQEN-KRVFEGLESLVDV 199

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 1   QTTFR----KKFWDFVA--AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDV 54
           QT F     + FWDF+   +E +  S+F DAM +DS +  +V+ E+ K VF+GL+SLVDV
Sbjct: 142 QTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQEN-KRVFEGLESLVDV 200

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 9   WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68
           +++   +P    +F   M +D   IT+  I +    F+GLKSLVDVGGGTG +   I + 
Sbjct: 163 FEYHGTDPRFNKVFNKGM-SDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSK 221
Query: 69  F 69
           +
Sbjct: 222 Y 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	4e-17
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-16
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	2e-16
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	2e-16
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	2e-16
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	2e-16
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	5e-15
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	1e-14
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	3e-14
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	3e-14
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	3e-14
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	6e-12
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	4e-11
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	7e-09
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	3e-08

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score = 72.1 bits (177), Expect = 4e-17
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
             T    FWDF+   P   + F DAM +DS+LI + + + C  VF GL+S+VDVGGGTGT
Sbjct: 143 GVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDGLESIVDVGGGTGT 201

Query: 61  MARAIATGF 69
            A+ I   F
Sbjct: 202 TAKIICETF 210

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score = 71.3 bits (175), Expect = 1e-16
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
              + + FW+ ++A+  L   F   M  D +L      +     +  ++ ++DVGGG G 
Sbjct: 138 AGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGG 195

Query: 61  MARAIATGF 69
           M  AIA   
Sbjct: 196 MLAAIALRA 204

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score = 70.4 bits (173), Expect = 2e-16
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
           ++ + K F++ +A  P+L + F   +  D ++            +  ++ ++DVGGG G 
Sbjct: 139 ESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGG 196

Query: 61  MARAIATGF 69
            A AIA   
Sbjct: 197 FAAAIARRA 205

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score = 70.4 bits (173), Expect = 2e-16
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
              +   FW+ + ++P L + F   M    EL    +       +  L  +VDVGGG+G 
Sbjct: 125 PVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVVDVGGGSGG 182

Query: 61  MARAIATGF 69
           +  A+ T  
Sbjct: 183 LLSALLTAH 191

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score = 70.0 bits (172), Expect = 2e-16
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
              F      +   +  +E+++Y+ M   S    +++       F    ++ DVGGG G 
Sbjct: 140 ADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG--DFPATGTVADVGGGRGG 197

Query: 61  MARAIATGF 69
               +    
Sbjct: 198 FLLTVLREH 206

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score = 70.1 bits (172), Expect = 2e-16
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
                  FW     +P    +F  AM + S      V       F G  + VD+GGG G+
Sbjct: 158 DVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY--DFSGAATAVDIGGGRGS 215

Query: 61  MARAIATGF 69
           +  A+   F
Sbjct: 216 LMAAVLDAF 224

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score = 66.4 bits (162), Expect = 5e-15
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1   QTTFRKKFWDFVA--AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGT 58
           +    + FWDF+   +E +  S+F DAM +DS +  +V+ E  K VF+GL+SLVDVGGGT
Sbjct: 146 ECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQE-NKRVFEGLESLVDVGGGT 204

Query: 59  GTMARAIATGF 69
           G + + I   F
Sbjct: 205 GGVTKLIHEIF 215

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score = 65.6 bits (160), Expect = 1e-14
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
              +    +D+   +  +  +F   M ++S +    ++E     F+GL ++VDVGGGTG 
Sbjct: 158 NKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGA 216

Query: 61  MARAIATGF 69
           +A  I   +
Sbjct: 217 VASMIVAKY 225

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
              +    +++   +P    +F + M   S +IT  ++E     F+GL +LVDVGGG G 
Sbjct: 156 NKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELY-HGFEGLGTLVDVGGGVGA 214

Query: 61  MARAIATGF 69
              AIA  +
Sbjct: 215 TVAAIAAHY 223

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 64.3 bits (157), Expect = 3e-14
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 8   FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67
              +          F +   ++++    +++E+ K    G+K ++DVGGG G ++ A+  
Sbjct: 153 QVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLK 210

Query: 68  GF 69
            F
Sbjct: 211 HF 212

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
           +       ++F+  +  +  IF  +M+         ++E     F+G+ +LVDVGGG+G 
Sbjct: 164 KNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE-IYTGFEGISTLVDVGGGSGR 222

Query: 61  MARAIATGF 69
               I + +
Sbjct: 223 NLELIISKY 231

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score = 57.6 bits (140), Expect = 6e-12
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFK-GLKSLVDVGGGTG 59
           +  F + F+ ++   P+    F  AM A +     +   +   +     +S VDVGGG+G
Sbjct: 125 ELAFGEDFYSYLKRCPDAGRRFLLAMKASN-----LAFHEIPRLLDFRGRSFVDVGGGSG 179

Query: 60  TMARAIATGF 69
            + +AI    
Sbjct: 180 ELTKAILQAE 189

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 55.5 bits (134), Expect = 4e-11
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 7   KFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIA 66
           +     A +      F DAM+  S+ +  VV E    VF   ++++D+ GG GT    + 
Sbjct: 141 QQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG--VFARARTVIDLAGGHGTYLAQVL 198

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 48.9 bits (117), Expect = 7e-09
 Identities = 9/58 (15%), Positives = 19/58 (32%)

Query: 9   WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIA 66
              ++ E  +   F  AM         ++ +   E       ++D+    G    A+A
Sbjct: 127 EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVA 184

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 47.4 bits (113), Expect = 3e-08
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 8   FWDFVAAEPNLESIFYDAMIAD-SELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIA 66
            ++ ++  P      +       S+      +E         K L+D+GG TG  A    
Sbjct: 141 IYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF--SHHPKRLLDIGGNTGKWATQCV 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.6
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.53
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.53
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.51
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.45
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.43
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.43
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.41
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.41
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.4
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.23
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.2
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.18
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.07
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.07
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.95
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	97.8
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	97.04
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	96.95
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.91
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.89
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.89
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.89
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.86
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.84
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	96.83
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	96.82
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.81
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.78
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.78
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.76
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	96.74
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.72
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.68
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	96.67
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	96.66
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.66
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.63
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.62
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.61
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.57
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.55
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.54
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	96.53
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	96.53
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.53
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.53
3cc8_A	230	Putative methyltransferase; structural genomics, j	96.52
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	96.51
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.48
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.47
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.45
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.44
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	96.43
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	96.43
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.38
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.36
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	96.35
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	96.28
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.27
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.26
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	96.25
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.23
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.22
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.21
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	96.2
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.2
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	96.19
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.17
3i9f_A	170	Putative type 11 methyltransferase; structural gen	96.16
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.16
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.15
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.12
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	96.1
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.1
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.08
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.06
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	96.04
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.04
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.03
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.02
1ws6_A	171	Methyltransferase; structural genomics, riken stru	95.98
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	95.93
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.92
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.89
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.89
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.88
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.88
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	95.88
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	95.86
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.86
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	95.83
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	95.81
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	95.79
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	95.77
2b3t_A	276	Protein methyltransferase HEMK; translation termin	95.77
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.76
2p7i_A	250	Hypothetical protein; putative methyltransferase,	95.76
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.76
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	95.74
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.73
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	95.73
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	95.73
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.72
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	95.7
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.66
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	95.65
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.65
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.65
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	95.63
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.61
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	95.61
3ege_A	261	Putative methyltransferase from antibiotic biosyn	95.6
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.58
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.58
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.57
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	95.57
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	95.56
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.54
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	95.54
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.53
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	95.51
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	95.4
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.4
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.37
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.34
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	95.32
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	95.3
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	95.3
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	95.29
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	95.29
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	95.26
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	95.24
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	95.24
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	95.24
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	95.23
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	95.19
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	95.19
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	95.16
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	95.15
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	95.15
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	95.15
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.14
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	95.14
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	95.12
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.08
2o07_A	304	Spermidine synthase; structural genomics, structur	95.08
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.05
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.03
2h00_A	254	Methyltransferase 10 domain containing protein; st	94.96
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	94.95
2i7c_A	283	Spermidine synthase; transferase, structural genom	94.95
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	94.94
2pt6_A	321	Spermidine synthase; transferase, structural genom	94.93
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	94.92
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	94.89
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	94.87
3lpm_A	259	Putative methyltransferase; structural genomics, p	94.87
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	94.86
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	94.85
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	94.83
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	94.82
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	94.82
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	94.8
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	94.75
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	94.74
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	94.73
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	94.72
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	94.71
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	94.7
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	94.66
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	94.6
2esr_A	177	Methyltransferase; structural genomics, hypothetic	94.59
2b25_A	336	Hypothetical protein; structural genomics, methyl	94.53
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	94.53
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	94.49
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	94.47
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	94.46
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	94.45
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	94.45
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	94.45
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	94.44
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	94.43
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	94.33
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.3
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	94.25
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	94.24
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	94.19
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	94.18
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	94.1
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	94.07
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	94.04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	93.97
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	93.96
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	93.86
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	93.79
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	93.68
2qm3_A	373	Predicted methyltransferase; putative methyltransf	93.67
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	93.65
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	93.57
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	93.51
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	93.46
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	93.44
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	93.42
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	93.24
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	93.2
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	93.16
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	93.16
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	93.15
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	93.12
3ocj_A	305	Putative exported protein; structural genomics, PS	93.12
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	93.11
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	93.07
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	93.01
3lcc_A	235	Putative methyl chloride transferase; halide methy	92.72
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	92.61
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	92.57
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	92.51
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	92.26
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	92.05
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	92.02
2frn_A	278	Hypothetical protein PH0793; structural genomics,	91.93
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	91.74
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	91.56
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	91.24
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	91.13
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	90.94
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	90.83
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	90.7
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	90.67
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	90.6
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	90.25
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	90.07
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	89.96
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	89.67
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	89.66
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	89.65
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	89.58
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	89.38
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	89.09
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	88.84
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	88.83
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	88.18
3ll7_A	410	Putative methyltransferase; methytransferase, stru	88.06
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	87.59
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	87.41
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	87.2
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	86.67
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	86.63
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	86.44
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	86.3
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	86.06
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	85.9
2zig_A	297	TTHA0409, putative modification methylase; methylt	85.36
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	84.78
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	84.69
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	84.3
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	83.78
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	83.44
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	83.22
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	83.2
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	83.03
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	82.98
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	82.59
3k6r_A	278	Putative transferase PH0793; structural genomics,	82.04
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	81.58
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	81.52
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	81.24
4dyq_A	140	Gene 1 protein; GP1, octamer, DNA-binding, viral p	80.38

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.60  E-value=2e-15  Score=95.26  Aligned_cols=64  Identities=14%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             CChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            6 KKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         6 ~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .++|+++.++|+....|+++|...+....+.+++.||  |++..+|||||||+|.++.+|+++||+
T Consensus       140 ~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~  203 (353)
T 4a6d_A          140 EELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPG  203 (353)
T ss_dssp             SSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSS
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCC
Confidence            4689999999999999999999999888899999999  899999999999999999999999996

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.53  E-value=1.2e-14  Score=92.00  Aligned_cols=68  Identities=31%  Similarity=0.581  Sum_probs=62.3

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+.|+.+|...+....+.+++.|++ +++..+|||||||+|.++..|++++|+
T Consensus       158 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~  225 (364)
T 3p9c_A          158 AYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHG-FEGLGTLVDVGGGVGATVAAIAAHYPT  225 (364)
T ss_dssp             HHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             hcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhccc-ccCCCEEEEeCCCCCHHHHHHHHHCCC
Confidence            56889999999999999999999999888888889999973 778899999999999999999999985

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.53  E-value=1.6e-14  Score=91.52  Aligned_cols=68  Identities=26%  Similarity=0.572  Sum_probs=62.4

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+.|+.+|...+....+.+++.|++ +++..+|||||||+|.++..+++++|+
T Consensus       160 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~  227 (368)
T 3reo_A          160 AYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNG-FEGLTTIVDVGGGTGAVASMIVAKYPS  227 (368)
T ss_dssp             HSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCT-TTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             HhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhccc-ccCCCEEEEeCCCcCHHHHHHHHhCCC
Confidence            57889999999999999999999999888888889999973 778899999999999999999999985

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.51  E-value=1.9e-14  Score=90.27  Aligned_cols=67  Identities=18%  Similarity=0.367  Sum_probs=62.5

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+.|+.+|...+....+.+++.++  +.+..+|||||+|+|.++..+++++|+
T Consensus       142 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~  208 (348)
T 3lst_A          142 IFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPG  208 (348)
T ss_dssp             HHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTT
T ss_pred             HhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCC
Confidence            4678899999999999999999999998888889999999  888999999999999999999999985

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.45  E-value=1.2e-13  Score=87.42  Aligned_cols=67  Identities=27%  Similarity=0.444  Sum_probs=62.0

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+.|+.+|...+....+.+++.++  +.+..+|||||||+|.++..+++++|+
T Consensus       160 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~  226 (369)
T 3gwz_A          160 ANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPG  226 (369)
T ss_dssp             HHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             hcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCC
Confidence            3577899999999999999999999998888889999999  888899999999999999999999984

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.43  E-value=1.6e-13  Score=86.25  Aligned_cols=68  Identities=41%  Similarity=0.759  Sum_probs=60.0

Q ss_pred             cCCCChhhhhhcCcchHH--HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLES--IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~--~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+  .|+.+|...+.... .+++.|++.+.+..+|||||||+|.++..+++++|+
T Consensus       148 ~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~  217 (358)
T 1zg3_A          148 ATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPH  217 (358)
T ss_dssp             HHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             HhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCC
Confidence            457889999999999999  99999999887766 889999433788899999999999999999999985

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.43  E-value=4.8e-14  Score=87.77  Aligned_cols=67  Identities=27%  Similarity=0.451  Sum_probs=61.1

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+.|+.+|...+....+.+++.++  +.+..+|+|||+|+|.++..+++++|+
T Consensus       127 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~  193 (332)
T 3i53_A          127 RYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHED  193 (332)
T ss_dssp             HHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             hhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCC
Confidence            4577899999999999999999999988877778889998  788899999999999999999999985

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.41  E-value=3.5e-13  Score=83.75  Aligned_cols=65  Identities=31%  Similarity=0.509  Sum_probs=59.3

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+.|+.+| ..+....+.+++.++  +.+ .+|+|||+|+|..+..+++++|+
T Consensus       127 ~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~  191 (334)
T 2ip2_A          127 AFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPS  191 (334)
T ss_dssp             HHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTT
T ss_pred             hcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCC
Confidence            357889999999999999999999 888877888999998  777 99999999999999999999884

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.41  E-value=3.2e-13  Score=84.75  Aligned_cols=68  Identities=49%  Similarity=0.879  Sum_probs=59.9

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|.++|+|+.++|+..+.|+.+|...+....+. ++.|++.+.+..+|+|||+|+|.++..+++++|+
T Consensus       145 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~  212 (352)
T 1fp2_A          145 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPK  212 (352)
T ss_dssp             HHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             HcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCC
Confidence            3577899999999999999999999988877677 8888323888899999999999999999999984

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.40  E-value=5.3e-13  Score=84.33  Aligned_cols=69  Identities=23%  Similarity=0.443  Sum_probs=54.7

Q ss_pred             ccCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            2 TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         2 ~~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .++|.++|+|+.++|+..+.|+.+|...+....+.+++.|+ .+.+..+|+|||+|+|.++..+++++|+
T Consensus       165 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~  233 (372)
T 1fp1_D          165 NVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPL  233 (372)
T ss_dssp             ---------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             HHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCC
Confidence            35678899999999999999999999988877788999986 3677899999999999999999999984

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.23  E-value=8.8e-12  Score=78.10  Aligned_cols=67  Identities=25%  Similarity=0.446  Sum_probs=60.5

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+|.++|+++..+|+....|..+|...+....+.+++.++  +....+|+|||+|+|.++..+++++|+
T Consensus       141 ~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~  207 (360)
T 1tw3_A          141 IYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPH  207 (360)
T ss_dssp             HHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             hcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCC
Confidence            3578899999999999999999999888777788999998  788899999999999999999999874

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.20  E-value=1.4e-11  Score=77.37  Aligned_cols=67  Identities=27%  Similarity=0.469  Sum_probs=60.5

Q ss_pred             cCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+|.++|+++..+|+..+.|+.+|...+....+.+++.++  +....+|+|||+|+|.++..+++++|+
T Consensus       140 ~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~  206 (374)
T 1qzz_A          140 RYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPH  206 (374)
T ss_dssp             HHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             hhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCC
Confidence            3578899999999999999999999887777788999998  788899999999999999999999874

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.18  E-value=5.7e-11  Score=74.60  Aligned_cols=61  Identities=21%  Similarity=0.525  Sum_probs=56.6

Q ss_pred             hhhhhcCcc---hHHHHHHHHHhcch-hhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            9 WDFVAAEPN---LESIFYDAMIADSE-LITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         9 f~~~~~~p~---~~~~F~~~M~~~~~-~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      |+|+.++|+   ..+.|..+|...+. ...+.+++.++  +.+..+|+|||+|+|.++..+++++|+
T Consensus       150 ~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~  214 (359)
T 1x19_A          150 FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPE  214 (359)
T ss_dssp             CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTT
T ss_pred             CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCC
Confidence            899999999   99999999999887 77788999998  888899999999999999999999984

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.07  E-value=3.4e-10  Score=71.43  Aligned_cols=64  Identities=20%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             cCC--CChhhhhhcCcchHH----HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            3 TFR--KKFWDFVAAEPNLES----IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         3 ~~g--~~~f~~~~~~p~~~~----~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++|  .++|+++.++|+..+    .|+.+|...+.   ..++..+.  ..+..+|||||||+|.++..+++++|+
T Consensus       134 ~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~  203 (363)
T 3dp7_A          134 VFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKE  203 (363)
T ss_dssp             GTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTT
T ss_pred             ccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCC
Confidence            466  689999999999877    37777765432   23455544  467789999999999999999999985

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.07  E-value=4.8e-10  Score=69.37  Aligned_cols=61  Identities=13%  Similarity=-0.001  Sum_probs=55.9

Q ss_pred             hhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhh--CCCceeEeecCCccHHHHHHHHhcCC
Q 047240            9 WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVF--KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         9 f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~--~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      |+++.++|+....|..+|...+......+++.++  +  .+..+|+|||+|+|.++..+++++|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~  189 (335)
T 2r3s_A          127 EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHNPN  189 (335)
T ss_dssp             TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHCTT
T ss_pred             cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHCCC
Confidence            8899999999999999999988887788999998  6  78899999999999999999999874

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.95  E-value=2.6e-09  Score=66.67  Aligned_cols=58  Identities=21%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             hhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCC-CceeEeecCCccHHHHHHHHhcCC
Q 047240           11 FVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKG-LKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        11 ~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~-~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ++.++|+..+.|..+|...... ...+++.++  +.+ ..+|||||+|+|.++..+++++|+
T Consensus       145 ~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~  203 (352)
T 3mcz_A          145 RFAHDTRARDAFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQ  203 (352)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTT
T ss_pred             ccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCC
Confidence            3467899999999999984433 347899999  666 899999999999999999999985

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.80  E-value=1.8e-05  Score=46.07  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=41.1

Q ss_pred             ChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240            7 KFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus         7 ~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ++++|....|.....+...+........+.+.+..+    ...+|+|||.|+|.++..++++.|
T Consensus         2 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~vLDlG~G~G~~~~~l~~~~~   61 (227)
T 1ve3_A            2 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMK----KRGKVLDLACGVGGFSFLLEDYGF   61 (227)
T ss_dssp             CCHHHHHHCSTTTCTTSHHHHHHHHHHHHHHHHSCC----SCCEEEEETCTTSHHHHHHHHTTC
T ss_pred             CchhHHHHhhhhhcccHHHHHHHHHHHHHHHHHhcC----CCCeEEEEeccCCHHHHHHHHcCC
Confidence            456666667766666666665444434444444443    367999999999999999988765

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=97.04  E-value=0.0009  Score=39.08  Aligned_cols=53  Identities=15%  Similarity=-0.008  Sum_probs=26.7

Q ss_pred             CcchHHHHHHHHHhcch----hhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           15 EPNLESIFYDAMIADSE----LITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        15 ~p~~~~~F~~~M~~~~~----~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +|+..+.|...+.....    ...+.+....+  .....+|+|||.|+|.++..++++.
T Consensus         9 ~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~   65 (243)
T 3bkw_A            9 QPDFFAGYSQLGRSIEGLDGAAEWPALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHG   65 (243)
T ss_dssp             ----------------CGGGCTTHHHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHhccCCccHHHHHhHHHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCC
Confidence            45556666666654332    22334555555  4566899999999999999998763

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=96.95  E-value=0.0013  Score=38.09  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=26.4

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+...+  .....+|+|||.|+|.++..+++++|.
T Consensus        19 ~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~   51 (218)
T 3mq2_A           19 EFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPS   51 (218)
T ss_dssp             HHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTT
T ss_pred             HHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCC
Confidence            344444  456789999999999999999998873

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.91  E-value=0.0011  Score=37.02  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+++..+  .....+|+|||.|+|.++..+++++|
T Consensus        16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~   48 (178)
T 3hm2_A           16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTP   48 (178)
T ss_dssp             HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSS
T ss_pred             HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCC
Confidence            3445555  45667999999999999999998876

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.89  E-value=0.002  Score=36.96  Aligned_cols=35  Identities=11%  Similarity=0.213  Sum_probs=27.9

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..++...+  .....+|+|||.|+|.++..++++.|.
T Consensus        30 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~   64 (204)
T 3e05_A           30 AVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPN   64 (204)
T ss_dssp             HHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTT
T ss_pred             HHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCC
Confidence            34555555  566789999999999999999998763

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.89  E-value=0.0043  Score=37.94  Aligned_cols=62  Identities=11%  Similarity=0.046  Sum_probs=37.4

Q ss_pred             CChhhhhhc---CcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240            6 KKFWDFVAA---EPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus         6 ~~~f~~~~~---~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .++++++..   .......|.. +..........+++..+ ......+|+|||.|+|.++..+++++
T Consensus        75 ~~~~~~~~~~~~~~y~~~~f~~-~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~  139 (312)
T 3vc1_A           75 PVDRAALGDPEHSEYEKKVIAE-LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF  139 (312)
T ss_dssp             CCCHHHHCCTTSTTHHHHHHHH-HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             hhHHHhhcCCCccccchHHHhh-hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc
Confidence            345555543   1122334443 44444444445555554 14456899999999999999998863

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.89  E-value=0.00054  Score=41.41  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=23.9

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh-cC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG-FL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~-~P   70 (71)
                      ..++...+  .....+|+|+|.|+|.++..+++. +|
T Consensus       100 ~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~  134 (275)
T 1yb2_A          100 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNG  134 (275)
T ss_dssp             ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTT
T ss_pred             HHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCC
Confidence            34556666  666789999999999999999987 44

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.86  E-value=0.0018  Score=38.21  Aligned_cols=33  Identities=18%  Similarity=0.003  Sum_probs=25.9

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+.+..+  .....+|+|||.|+|.++..++++.+
T Consensus        35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~   67 (253)
T 3g5l_A           35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGA   67 (253)
T ss_dssp             HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTC
T ss_pred             HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCC
Confidence            4455555  44668999999999999999998765

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.84  E-value=0.0022  Score=36.56  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=22.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..+++++|
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~   53 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACP   53 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCT
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCC
Confidence            5678999999999999999999876

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=96.83  E-value=0.0018  Score=37.59  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=22.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+|+|||.|+|.++..+++++|+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~   65 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPD   65 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCC
Confidence            4578999999999999999999874

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=96.82  E-value=0.0021  Score=37.15  Aligned_cols=33  Identities=18%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+.+..+  .....+|+|||.|+|.++..+++++|
T Consensus        20 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~   52 (217)
T 3jwh_A           20 GVVAALK--QSNARRVIDLGCGQGNLLKILLKDSF   52 (217)
T ss_dssp             HHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCTT
T ss_pred             HHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhCC
Confidence            3444444  45667999999999999999998776

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.81  E-value=0.00061  Score=39.09  Aligned_cols=24  Identities=21%  Similarity=0.211  Sum_probs=21.4

Q ss_pred             CceeEeecCCccHHHHHHHHhcCC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+|+|||.|+|..+..+++.+|.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~   89 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPE   89 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCC
Confidence            579999999999999999988763

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.78  E-value=0.0025  Score=38.78  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=27.2

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++++|
T Consensus        62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~   95 (302)
T 3hem_A           62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD   95 (302)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC
Confidence            34556555  56678999999999999999998865

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.78  E-value=0.0024  Score=37.16  Aligned_cols=26  Identities=31%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++..|
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~   92 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALP   92 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSC
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCC
Confidence            45668999999999999999998765

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.76  E-value=0.0013  Score=39.04  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             hhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           31 ELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        31 ~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ......+++..+  .....+|+|||.|+|.++..++++.+
T Consensus        23 ~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~   60 (260)
T 1vl5_A           23 GSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK   60 (260)
T ss_dssp             CCCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS
T ss_pred             HHHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC
Confidence            334556777766  56778999999999999999987654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=96.74  E-value=0.0027  Score=36.18  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=27.2

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+.+.|. .+....+|+|||.|+|.++..+++++|
T Consensus        11 ~~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~   45 (201)
T 2plw_A           11 IELDNKYL-FLKKNKIILDIGCYPGSWCQVILERTK   45 (201)
T ss_dssp             HHHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTT
T ss_pred             HHHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcC
Confidence            34556665 134567999999999999999999876

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.72  E-value=0.0063  Score=35.68  Aligned_cols=51  Identities=20%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           18 LESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        18 ~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....|..............+....+. .....+|+|||.|+|.++..++++.
T Consensus        13 ~y~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~   63 (240)
T 3dli_A           13 YYFLFEEKFRGSRELVKARLRRYIPY-FKGCRRVLDIGCGRGEFLELCKEEG   63 (240)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHGGGGGG-TTTCSCEEEETCTTTHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhh-hcCCCeEEEEeCCCCHHHHHHHhCC
Confidence            34444444443333333344444441 3456899999999999999888763

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.68  E-value=0.0042  Score=36.96  Aligned_cols=33  Identities=27%  Similarity=0.258  Sum_probs=26.8

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++++
T Consensus        51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~   83 (273)
T 3bus_A           51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR   83 (273)
T ss_dssp             HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc
Confidence            45666666  5667899999999999999998865

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=96.67  E-value=0.0027  Score=37.08  Aligned_cols=25  Identities=20%  Similarity=0.225  Sum_probs=22.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+|+|||-|+|.++..+++++|+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~   62 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPD   62 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTT
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCC
Confidence            4578999999999999999999874

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.66  E-value=0.0034  Score=36.55  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..+++++|
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~   67 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYP   67 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCT
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC
Confidence            3458999999999999999999886

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=96.66  E-value=0.0027  Score=36.71  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=26.2

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+.+..+  .....+|+|||.|+|.++..++++.|
T Consensus        19 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~   52 (219)
T 3jwg_A           19 GTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDKS   52 (219)
T ss_dssp             HHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTSTT
T ss_pred             HHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcCC
Confidence            34444444  45567999999999999999998776

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.66  E-value=0.0034  Score=37.93  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=27.1

Q ss_pred             HHHHHHhchh--hhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKE--VFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~--~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++..+|  ......+|+|||.|+|.++..++++++
T Consensus        67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~  105 (297)
T 2o57_A           67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG  105 (297)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC
Confidence            3455666510  145678999999999999999998753

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.63  E-value=0.003  Score=37.18  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=28.9

Q ss_pred             hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+++..+  .....+|+|||.|+|.++..+++..+
T Consensus         9 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~   44 (239)
T 1xxl_A            9 SLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ   44 (239)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS
T ss_pred             CcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC
Confidence            4455667766  67788999999999999999987654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.62  E-value=0.0024  Score=37.63  Aligned_cols=34  Identities=12%  Similarity=0.230  Sum_probs=27.3

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++++|
T Consensus        23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~   56 (259)
T 2p35_A           23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYG   56 (259)
T ss_dssp             HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHC
T ss_pred             HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCC
Confidence            34566655  55668999999999999999999876

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.61  E-value=0.001  Score=39.43  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=27.8

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh-cC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG-FL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~-~P   70 (71)
                      ...++...+  .....+|+|||.|+|.++..++++ .|
T Consensus        82 ~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~  117 (255)
T 3mb5_A           82 AALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGP  117 (255)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             HHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCC
Confidence            345566666  567789999999999999999988 44

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.57  E-value=0.0049  Score=36.26  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=27.1

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|||.|+|.++..+++++
T Consensus        25 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~   58 (256)
T 1nkv_A           25 YATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH   58 (256)
T ss_dssp             HHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc
Confidence            445566665  5667899999999999999998875

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.55  E-value=0.0064  Score=36.18  Aligned_cols=33  Identities=18%  Similarity=0.440  Sum_probs=26.9

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++++
T Consensus        33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~   65 (275)
T 3bkx_A           33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQV   65 (275)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence            34566665  5667899999999999999999886

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.54  E-value=0.0048  Score=34.91  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=26.1

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+.+.++. .....+|+|||.|+|.++..+++++|
T Consensus        12 ~l~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~   45 (196)
T 2nyu_A           12 EVNERHQI-LRPGLRVLDCGAAPGAWSQVAVQKVN   45 (196)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCCSCHHHHHHHHHTT
T ss_pred             HHHHhcCC-CCCCCEEEEeCCCCCHHHHHHHHHhc
Confidence            34455551 34567999999999999999999865

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=96.53  E-value=0.0055  Score=36.36  Aligned_cols=25  Identities=40%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++++.+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~   73 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG   73 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC
Confidence            3557999999999999999987653

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=96.53  E-value=0.0035  Score=36.88  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=22.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+|+|||-|+|.++..+++++|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~   58 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE   58 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC
Confidence            5679999999999999999999884

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.53  E-value=0.0055  Score=35.85  Aligned_cols=26  Identities=15%  Similarity=0.289  Sum_probs=22.7

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++.+|
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~   77 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALP   77 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCT
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCC
Confidence            34567999999999999999999876

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.53  E-value=0.0043  Score=37.28  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=26.3

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  .....+|+|||.|.|.++..++++++
T Consensus        54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~   87 (287)
T 1kpg_A           54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD   87 (287)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC
Confidence            34555555  55667999999999999999997654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=96.52  E-value=0.0016  Score=37.51  Aligned_cols=45  Identities=18%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           21 IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        21 ~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .|...+..........+++..+   ....+|+|||.|+|.++..++++
T Consensus         9 ~y~~~~~~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~   53 (230)
T 3cc8_A            9 LYEEKSGHYYNAVNPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN   53 (230)
T ss_dssp             -----------CCCHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT
T ss_pred             hhhccchhHHHHHHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc
Confidence            3444443333333345555554   35679999999999999998875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=96.51  E-value=0.0022  Score=36.96  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=28.1

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++.++  .....+|+|||.|+|.++..+++..
T Consensus        26 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~   59 (219)
T 3dh0_A           26 PEKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMV   59 (219)
T ss_dssp             HHHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHh
Confidence            345667666  6677899999999999999999876

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.48  E-value=0.0022  Score=36.62  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++.++  .... +|+|||.|+|.++..++++
T Consensus        34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~   64 (219)
T 3dlc_A           34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ   64 (219)
T ss_dssp             HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc
Confidence            34445544  3333 9999999999999999886

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.47  E-value=0.0048  Score=36.27  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=26.1

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++..|
T Consensus        81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~  114 (235)
T 1jg1_A           81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK  114 (235)
T ss_dssp             HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC
Confidence            34455555  55667999999999999999998763

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.45  E-value=0.0012  Score=38.81  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=25.6

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+++.++  .....+|+|||.|+|.++..++++.
T Consensus        83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~  115 (254)
T 1xtp_A           83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL  115 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH
T ss_pred             HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh
Confidence            34555555  4567899999999999999888763

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.44  E-value=0.015  Score=33.75  Aligned_cols=25  Identities=36%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++++.+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~   63 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG   63 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC
Confidence            3567999999999999999998765

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=96.43  E-value=0.0076  Score=36.65  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=21.0

Q ss_pred             CCceeEeecCCc---cHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGT---GTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~---G~~~~~l~~~~P~   71 (71)
                      +..+|+|||.|+   |.++..+++.+|+
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~  104 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPD  104 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCC
Confidence            568999999999   9988888777774

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.43  E-value=0.0027  Score=35.61  Aligned_cols=30  Identities=17%  Similarity=0.317  Sum_probs=23.3

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .++..+.   ....+|+|||.|.|.++..++++
T Consensus        38 ~~l~~~~---~~~~~vLdiG~G~G~~~~~l~~~   67 (195)
T 3cgg_A           38 RLIDAMA---PRGAKILDAGCGQGRIGGYLSKQ   67 (195)
T ss_dssp             HHHHHHS---CTTCEEEEETCTTTHHHHHHHHT
T ss_pred             HHHHHhc---cCCCeEEEECCCCCHHHHHHHHC
Confidence            4555543   45679999999999999988875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.38  E-value=0.0018  Score=38.42  Aligned_cols=40  Identities=10%  Similarity=0.033  Sum_probs=27.3

Q ss_pred             hcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           28 ADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        28 ~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+.......+.+...   ....+|+|||.|.|..+..|++..|
T Consensus        44 ~we~~~m~~~a~~~~---~~G~rVLdiG~G~G~~~~~~~~~~~   83 (236)
T 3orh_A           44 RWETPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPI   83 (236)
T ss_dssp             GGGHHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHTTSCE
T ss_pred             HHHHHHHHHHHHhhc---cCCCeEEEECCCccHHHHHHHHhCC
Confidence            333333344444433   4557999999999999999988765

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.36  E-value=0.0048  Score=36.81  Aligned_cols=27  Identities=15%  Similarity=0.196  Sum_probs=23.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .....+|+|||.|+|.++..+++++|.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~   61 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPD   61 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTT
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998773

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=96.35  E-value=0.0038  Score=38.04  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=25.7

Q ss_pred             HHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           38 IEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        38 ~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      +..+...+....+|+|||.|+|.++..|++++|
T Consensus        37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~   69 (292)
T 3g07_A           37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG   69 (292)
T ss_dssp             GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTC
T ss_pred             HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcC
Confidence            344432344668999999999999999999876

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=96.28  E-value=0.0092  Score=37.31  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=24.4

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+.+..+  .....+|+|||.|+|.++..++++
T Consensus        54 ~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~   85 (340)
T 2fyt_A           54 DFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA   85 (340)
T ss_dssp             HHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc
Confidence            34444444  456679999999999999988875

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.27  E-value=0.0038  Score=36.78  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++++
T Consensus        45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~   77 (266)
T 3ujc_A           45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY   77 (266)
T ss_dssp             HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc
Confidence            44555555  5567799999999999999999864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.26  E-value=0.0034  Score=39.43  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             ceeEeecCCccHHHHHHHHhcCC
Q 047240           49 KSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+|+|||+|.|.++..+++.+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~  113 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQ  113 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCC
Confidence            38999999999999999998884

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=96.25  E-value=0.0031  Score=37.58  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=22.5

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ....+|+|||-|+|.++..+++++|+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~   70 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPD   70 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTT
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCC
Confidence            34578999999999999999999874

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.23  E-value=0.0071  Score=34.79  Aligned_cols=32  Identities=22%  Similarity=0.410  Sum_probs=25.7

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++..+  .....+|+|||.|+|.++..++++
T Consensus        35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~   66 (220)
T 3hnr_A           35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA   66 (220)
T ss_dssp             HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT
T ss_pred             HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC
Confidence            45666665  456789999999999999999875

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.22  E-value=0.0089  Score=34.16  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=24.1

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++.... .....+|+|||.|+|.++..++++
T Consensus        35 ~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~   67 (218)
T 3ou2_A           35 PAALERLRA-GNIRGDVLELASGTGYWTRHLSGL   67 (218)
T ss_dssp             HHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhc
Confidence            344454441 344569999999999999999876

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.21  E-value=0.0048  Score=36.58  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+|+|||.|+|.++..+++.+|+
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~   73 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPE   73 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCC
Confidence            5579999999999999999998874

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=96.20  E-value=0.0048  Score=38.49  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+++.++  .....+|+|||.|+|.++..+++++|+
T Consensus       185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~  220 (343)
T 2pjd_A          185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPK  220 (343)
T ss_dssp             HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTT
T ss_pred             HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCC
Confidence            345666665  334568999999999999999998873

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.20  E-value=0.0083  Score=38.16  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=27.4

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+++.++  .....+|+|||.|+|.++..+++++|.
T Consensus       213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~  246 (375)
T 4dcm_A          213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQ  246 (375)
T ss_dssp             HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTT
T ss_pred             HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCC
Confidence            4566666  344589999999999999999999874

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.016  Score=35.10  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=21.5

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|.++..+++++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~   58 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQEL   58 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC
Confidence            467899999999999999999875

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.17  E-value=0.011  Score=34.86  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=26.6

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..++...+  .....+|+|+|.|+|.++..++++
T Consensus        86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~  117 (258)
T 2pwy_A           86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARA  117 (258)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHH
Confidence            35666666  667789999999999999999987

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=96.16  E-value=0.0019  Score=35.85  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=25.3

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+++.++  .....+|+|||.|+|.++..++++.
T Consensus         8 ~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~   39 (170)
T 3i9f_A            8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA   39 (170)
T ss_dssp             TTHHHHH--SSCCEEEEEETCTTCTTHHHHHTTE
T ss_pred             HHHHhcC--cCCCCeEEEECCCCCHHHHHHHhhc
Confidence            3455555  5677899999999999999988764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.16  E-value=0.0029  Score=40.16  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=28.6

Q ss_pred             hhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           31 ELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        31 ~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ......+++.++  .....+|+|||.|+|.++..++++.
T Consensus        93 ~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~g  129 (416)
T 4e2x_A           93 AMLARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEAG  129 (416)
T ss_dssp             HHHHHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHTT
T ss_pred             HHHHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHcC
Confidence            334456677776  5667899999999999999998753

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.15  E-value=0.004  Score=36.51  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=22.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|.++..+++.+|
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~   97 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD   97 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC
Confidence            45667999999999999999998865

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.12  E-value=0.0096  Score=35.58  Aligned_cols=34  Identities=9%  Similarity=0.340  Sum_probs=26.9

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|||.|+|.++..++++.
T Consensus        19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~   52 (244)
T 1qam_A           19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC   52 (244)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC
Confidence            455666665  5567899999999999999998764

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=96.10  E-value=0.0076  Score=36.38  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=23.3

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++.+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~   45 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLP   45 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCC
Confidence            45678999999999999999999887

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.10  E-value=0.012  Score=35.45  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=27.7

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh-cC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG-FL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~-~P   70 (71)
                      ...++...+  .....+|+|+|.|+|.++..++++ .|
T Consensus       101 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~  136 (277)
T 1o54_A          101 SSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGS  136 (277)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTT
T ss_pred             HHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCC
Confidence            345566666  666789999999999999999987 44

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.08  E-value=0.026  Score=33.34  Aligned_cols=26  Identities=23%  Similarity=0.125  Sum_probs=23.0

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+..+|+|||.|+|..+..++++.|
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~   93 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIP   93 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCC
Confidence            45668999999999999999999876

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.06  E-value=0.01  Score=35.89  Aligned_cols=25  Identities=12%  Similarity=0.195  Sum_probs=21.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++++++
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~   93 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIH   93 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcC
Confidence            4567999999999999999998753

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.06  E-value=0.011  Score=34.69  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=25.9

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .++.... ......+|+|||.|+|.++..+++++|
T Consensus        36 ~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~   69 (257)
T 3f4k_A           36 KAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVK   69 (257)
T ss_dssp             HHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCC
T ss_pred             HHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCC
Confidence            3444442 144567999999999999999999876

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=96.04  E-value=0.0064  Score=36.55  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=25.9

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+....+  .....+|+|||.|+|.++..++++.
T Consensus        46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~   79 (293)
T 3thr_A           46 KAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG   79 (293)
T ss_dssp             HHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT
T ss_pred             HHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC
Confidence            344555555  4566899999999999999998764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.04  E-value=0.0099  Score=36.28  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=25.8

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++++
T Consensus        80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~  112 (318)
T 2fk8_A           80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF  112 (318)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC
Confidence            34555555  5566799999999999999998864

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.03  E-value=0.012  Score=33.83  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=20.2

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHH
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAI   65 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l   65 (71)
                      .+++.... .....+|+|||.|+|.++..+
T Consensus        57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l   85 (215)
T 2zfu_A           57 RIARDLRQ-RPASLVVADFGCGDCRLASSI   85 (215)
T ss_dssp             HHHHHHHT-SCTTSCEEEETCTTCHHHHHC
T ss_pred             HHHHHHhc-cCCCCeEEEECCcCCHHHHHh
Confidence            34444431 245579999999999988765

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.02  E-value=0.01  Score=36.27  Aligned_cols=23  Identities=30%  Similarity=0.653  Sum_probs=20.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||.|+|.++..+++. |
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~  145 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-S  145 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-S
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-C
Confidence            4568999999999999999987 5

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=95.98  E-value=0.011  Score=32.57  Aligned_cols=24  Identities=17%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|+|.|+|.++..++++.|
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~   64 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW   64 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC
Confidence            567999999999999999998765

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=95.93  E-value=0.011  Score=34.84  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=22.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ....+|+|||-|+|.++..+++++|.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~   48 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQN   48 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTT
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCC
Confidence            45679999999999999999987763

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=95.89  E-value=0.012  Score=35.95  Aligned_cols=33  Identities=9%  Similarity=-0.112  Sum_probs=26.4

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++..+  .....+|+|||.|+|.++..++++
T Consensus        34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~   66 (261)
T 3iv6_A           34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER   66 (261)
T ss_dssp             HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT
T ss_pred             HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc
Confidence            345666666  566789999999999999999875

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.89  E-value=0.01  Score=34.02  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=25.1

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..++..+.  .....+|+|||.|+|.++..++++
T Consensus        42 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~   73 (227)
T 3e8s_A           42 QAILLAIL--GRQPERVLDLGCGEGWLLRALADR   73 (227)
T ss_dssp             HHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT
T ss_pred             HHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC
Confidence            34566665  455689999999999999998875

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.88  E-value=0.012  Score=34.09  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++++|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~   81 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLS   81 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCC
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCC
Confidence            44668999999999999999999876

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.88  E-value=0.014  Score=32.83  Aligned_cols=31  Identities=26%  Similarity=0.331  Sum_probs=24.3

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+++..+  .....+|+|||.|+|.++..++++
T Consensus        23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~   53 (199)
T 2xvm_A           23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN   53 (199)
T ss_dssp             HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC
Confidence            4555555  455679999999999999988865

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=95.88  E-value=0.014  Score=38.14  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=25.8

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+++..+  .....+|+|||.|+|.++..+++.+|
T Consensus       233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g  265 (433)
T 1u2z_A          233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG  265 (433)
T ss_dssp             HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCC
Confidence            3444444  45668999999999999999998765

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=95.86  E-value=0.017  Score=33.20  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=24.8

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+++..+  .....+|+|||.|+|.++..+++..
T Consensus        68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~   99 (215)
T 2yxe_A           68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIV   99 (215)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred             HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHh
Confidence            3444444  4556799999999999999998876

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.86  E-value=0.011  Score=32.92  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=25.7

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++..+  .....+|+|||.|+|.++..++++
T Consensus        41 ~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~   73 (194)
T 1dus_A           41 TKILVENVV--VDKDDDILDLGCGYGVIGIALADE   73 (194)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG
T ss_pred             HHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc
Confidence            345666666  556789999999999999988765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=95.83  E-value=0.01  Score=35.63  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=18.9

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+|+|||.|+|.++..++++
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~   89 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER   89 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT
T ss_pred             CCEEEEeCCcchHHHHHHHHC
Confidence            469999999999999999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=95.81  E-value=0.013  Score=36.64  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=24.7

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++...  .....+|+|||.|+|.++..++++
T Consensus        40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~   71 (348)
T 2y1w_A           40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA   71 (348)
T ss_dssp             HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC
Confidence            34555555  446679999999999999988875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=95.79  E-value=0.014  Score=34.28  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++..|
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~   94 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISD   94 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCT
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCC
Confidence            45678999999999999999998665

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.77  E-value=0.047  Score=31.94  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~   62 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER   62 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC
Confidence            45579999999999999998875

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=95.77  E-value=0.022  Score=34.25  Aligned_cols=25  Identities=32%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+|+|||.|+|..+..+++.+|.
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~  133 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPD  133 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCC
Confidence            4569999999999999999988763

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.76  E-value=0.017  Score=32.18  Aligned_cols=31  Identities=26%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .++...+  .....+|+|||.|+|.++..+++.
T Consensus        24 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~   54 (192)
T 1l3i_A           24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGR   54 (192)
T ss_dssp             HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTT
T ss_pred             HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHh
Confidence            3444445  556689999999999999988865

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=95.76  E-value=0.012  Score=34.12  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=21.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++++.|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~   65 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN   65 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC
Confidence            3556899999999999999988765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.76  E-value=0.018  Score=33.68  Aligned_cols=54  Identities=15%  Similarity=0.255  Sum_probs=34.4

Q ss_pred             hcCcchHHHHHHHHHhcc----hhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           13 AAEPNLESIFYDAMIADS----ELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        13 ~~~p~~~~~F~~~M~~~~----~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...|+........|....    ......++...+  .....+|+|+|.|+|.++..++++
T Consensus        55 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~  112 (248)
T 2yvl_A           55 VYRPTLEEIILLGFERKTQIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEV  112 (248)
T ss_dssp             EECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             EeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh
Confidence            345655554444444332    222334555555  556789999999999999998875

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=95.74  E-value=0.019  Score=33.78  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=22.7

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++..|
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~   83 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALP   83 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSC
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCC
Confidence            44667999999999999999999876

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.73  E-value=0.017  Score=31.98  Aligned_cols=31  Identities=35%  Similarity=0.460  Sum_probs=23.9

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++
T Consensus        25 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~   55 (183)
T 2yxd_A           25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK   55 (183)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh
Confidence            34455555  45667999999999999998876

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.73  E-value=0.012  Score=33.11  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~   44 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKR   44 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTT
T ss_pred             CCCCeEEEeccCccHHHHHHHhc
Confidence            34569999999999999998765

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=95.73  E-value=0.026  Score=34.12  Aligned_cols=18  Identities=28%  Similarity=0.632  Sum_probs=14.0

Q ss_pred             CceeEeecCCccHHHHHH
Q 047240           48 LKSLVDVGGGTGTMARAI   65 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l   65 (71)
                      ..+|+|||.|+|.++..+
T Consensus        53 ~~~VLDiG~GtG~~~~~~   70 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQI   70 (292)
T ss_dssp             EEEEEEETCTTSHHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHH
Confidence            468999999999765433

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.72  E-value=0.017  Score=33.91  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||.|+|.++..++++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~   60 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR   60 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC
Confidence            455679999999999999988764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=95.70  E-value=0.022  Score=31.13  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=24.6

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+++.+. ......+|+|||.|+|.++..+++++
T Consensus        12 ~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~   44 (180)
T 1ej0_A           12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQI   44 (180)
T ss_dssp             HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHH
T ss_pred             HHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHh
Confidence            3445444 13456799999999999999999874

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.66  E-value=0.026  Score=32.69  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=24.7

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .+++..+  .....+|+|||.|+|.++..+++..
T Consensus        61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~   92 (231)
T 1vbf_A           61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV   92 (231)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc
Confidence            4455554  4566799999999999999988753

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=95.65  E-value=0.019  Score=37.67  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=26.0

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  .....+|+|||-|+|.++..+++.+|
T Consensus       163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g  196 (438)
T 3uwp_A          163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN  196 (438)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCC
Confidence            34444444  45667999999999999999988765

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.65  E-value=0.017  Score=33.43  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++++|
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~   87 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALP   87 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCC
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCC
Confidence            34567999999999999999999876

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.65  E-value=0.014  Score=35.58  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=27.4

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|||.|+|.++..++++.
T Consensus        17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~   50 (285)
T 1zq9_A           17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA   50 (285)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS
T ss_pred             HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC
Confidence            455666666  5667899999999999999998764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=95.63  E-value=0.01  Score=35.54  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=21.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||-|+|.++..+++..|
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~   38 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQ   38 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCC
Confidence            447999999999999999999876

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.61  E-value=0.022  Score=34.01  Aligned_cols=32  Identities=9%  Similarity=0.310  Sum_probs=26.1

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..++...+  .....+|+|||.|+|.++..++++
T Consensus        89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~  120 (280)
T 1i9g_A           89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRA  120 (280)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHH
Confidence            45566666  566789999999999999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=95.61  E-value=0.017  Score=34.36  Aligned_cols=26  Identities=15%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++++|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~   86 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELP   86 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSC
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCC
Confidence            45668999999999999999999876

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=95.60  E-value=0.015  Score=34.63  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=25.3

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      ...+++..+  .....+|+|||.|+|.++..+++
T Consensus        23 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~   54 (261)
T 3ege_A           23 VNAIINLLN--LPKGSVIADIGAGTGGYSVALAN   54 (261)
T ss_dssp             HHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT
T ss_pred             HHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh
Confidence            345555555  56678999999999999999886

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.58  E-value=0.029  Score=32.07  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=24.3

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+++..+  .....+|+|||.|+|.++..+++.
T Consensus        68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~   98 (210)
T 3lbf_A           68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL   98 (210)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh
Confidence            4445555  556789999999999999998875

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.58  E-value=0.017  Score=33.42  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=23.8

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ++...+  .....+|+|||.|+|.++..++++
T Consensus        47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~   76 (204)
T 3njr_A           47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA   76 (204)
T ss_dssp             HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc
Confidence            445555  556689999999999999998875

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.57  E-value=0.015  Score=34.92  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .....+|+|+|.|+|.++..+++++|.
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~   60 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEK   60 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCC
Confidence            345679999999999999999998863

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=95.57  E-value=0.0084  Score=35.96  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.9

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+|+|||.|+|..+..++..+|+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~  104 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPE  104 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCC
Confidence            4579999999999999999988774

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=95.56  E-value=0.006  Score=35.74  Aligned_cols=25  Identities=16%  Similarity=0.228  Sum_probs=21.8

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|||.|+|.++..+++++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~   99 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIV   99 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHh
Confidence            4556799999999999999999875

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.54  E-value=0.012  Score=33.86  Aligned_cols=34  Identities=9%  Similarity=0.316  Sum_probs=25.9

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+.+.|. .+....+|+|+|.|+|..+..++++
T Consensus        13 L~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~   46 (191)
T 3dou_A           13 LEFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL   46 (191)
T ss_dssp             HHHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT
T ss_pred             HHHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc
Confidence            345666665 2456789999999999999988764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=95.54  E-value=0.013  Score=36.04  Aligned_cols=35  Identities=11%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++..+  .....+|+|||-|+|.++..++++.+
T Consensus        31 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~   65 (279)
T 3uzu_A           31 IDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLA   65 (279)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHC
T ss_pred             HHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCC
Confidence            445666665  56678999999999999999998754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.53  E-value=0.023  Score=35.02  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  .....+|+|||.|.|.++..+++..+
T Consensus        65 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~   98 (317)
T 1dl5_A           65 ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVG   98 (317)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHC
T ss_pred             HHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcC
Confidence            34455555  45667999999999999999988765

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=95.51  E-value=0.055  Score=35.53  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=24.7

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++..+  .....+|+|||.|+|.++..++++
T Consensus       148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~~  179 (480)
T 3b3j_A          148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA  179 (480)
T ss_dssp             HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHHT
T ss_pred             HHHHHhhh--hcCCCEEEEecCcccHHHHHHHHc
Confidence            45566655  455679999999999999988763

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=95.40  E-value=0.022  Score=38.92  Aligned_cols=53  Identities=17%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             hhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchh--hhCCCceeEeecCCccHHHHHHHH
Q 047240            8 FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKE--VFKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus         8 ~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~--~~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      .||-+++||-.-..+.+|+..       .+.+..+.  ......+|+|||.|+|-++...++
T Consensus       323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~  377 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLR  377 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHH
T ss_pred             hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHH
Confidence            577888899888888888753       22222110  023456899999999998655444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.40  E-value=0.0075  Score=36.72  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|.|.++..+++..|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~   98 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPS   98 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTT
T ss_pred             CCCEEEEECCchHHHHHHHHhCCC
Confidence            457999999999999999987654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.37  E-value=0.023  Score=34.07  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=25.5

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++..+  .....+|+|||.|+|.++..++++
T Consensus       110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~  141 (286)
T 3m70_A          110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL  141 (286)
T ss_dssp             HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT
T ss_pred             HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC
Confidence            34556666  456789999999999999998875

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.34  E-value=0.012  Score=36.19  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=20.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|.|.++..+++..|
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~  118 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGT  118 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCC
Confidence            457999999999999999997654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=95.32  E-value=0.037  Score=38.48  Aligned_cols=51  Identities=12%  Similarity=0.236  Sum_probs=33.4

Q ss_pred             hhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHH
Q 047240            8 FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIA   66 (71)
Q Consensus         8 ~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~   66 (71)
                      .||-|.+|+.+-..|.+|+...       +.+.++. -.+..+|+|||.|+|-++...+
T Consensus       378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~-~~~~~VVldVGaGtGpLs~~al  428 (745)
T 3ua3_A          378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGAD-GRKTVVIYLLGGGRGPIGTKIL  428 (745)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTT-CCSEEEEEEESCTTCHHHHHHH
T ss_pred             HHHHHcCChhhHHHHHHHHHHH-------HHHhhcc-cCCCcEEEEECCCCCHHHHHHH
Confidence            4677777888888887777542       2222220 1245799999999999975443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=95.30  E-value=0.039  Score=32.93  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+..+|+|||.|+|..+..++++.|
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~  102 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIP  102 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSC
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCC
Confidence            34567999999999999999999876

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=95.30  E-value=0.017  Score=33.77  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++++.+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~   79 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP   79 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC
Confidence            4567899999999999999998765

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=95.29  E-value=0.027  Score=34.51  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=25.9

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .... +|+|||-|+|.+...++++.
T Consensus        36 ~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~   68 (271)
T 3fut_A           36 LRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG   68 (271)
T ss_dssp             HHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT
T ss_pred             HHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC
Confidence            455666665  4555 99999999999999998864

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=95.29  E-value=0.026  Score=32.42  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|..+..+++..|
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~   79 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAIS   79 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSC
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCC
Confidence            4567999999999999999998876

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=95.26  E-value=0.028  Score=33.44  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+..+|+|||.|+|..+..++++.|
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~   83 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALP   83 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSC
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCC
Confidence            44668999999999999999999876

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=95.24  E-value=0.023  Score=34.05  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      ..+++..+  .....+|+|||.|+|.++..+++
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~   77 (279)
T 3ccf_A           47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ   77 (279)
T ss_dssp             CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh
Confidence            34555555  45667999999999999999887

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=95.24  E-value=0.017  Score=35.11  Aligned_cols=24  Identities=8%  Similarity=0.106  Sum_probs=21.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||-|+|.++..+++..|
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~   44 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQT   44 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTS
T ss_pred             CCCEEEEECCccHHHHHHHHHhCC
Confidence            457999999999999999998776

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=95.24  E-value=0.017  Score=34.73  Aligned_cols=24  Identities=17%  Similarity=0.065  Sum_probs=21.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||-|+|.++..+++..|
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~   44 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGY   44 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTC
T ss_pred             CCCEEEEECCchHHHHHHHHHhCC
Confidence            447999999999999999998766

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=95.23  E-value=0.039  Score=34.19  Aligned_cols=34  Identities=15%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+++..+  .....+|+|||-|+|.++..++++
T Consensus        38 i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~   71 (295)
T 3gru_A           38 FVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN   71 (295)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc
Confidence            3455666666  566789999999999999999875

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=95.19  E-value=0.027  Score=32.68  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=18.6

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||.|+|.++..++++
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~   54 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH   54 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT
T ss_pred             CCCeEEEecCCCCHHHHHHhhC
Confidence            3479999999999999888754

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=95.19  E-value=0.017  Score=34.74  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=26.6

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++..+  .....+|+|||-|+|.++..++++
T Consensus        20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~   52 (249)
T 3ftd_A           20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH   52 (249)
T ss_dssp             HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc
Confidence            455666666  556779999999999999999875

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=95.16  E-value=0.026  Score=33.51  Aligned_cols=50  Identities=16%  Similarity=0.034  Sum_probs=32.8

Q ss_pred             HHHHHHhcchh--hHHHHHHhchh---hhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           22 FYDAMIADSEL--ITIVVIEDCKE---VFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        22 F~~~M~~~~~~--~~~~~~~~~d~---~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      |...|+.+...  ..+.+-.-|+.   ......+|+|+|-|.|.++..++...|+
T Consensus        19 ~~~~l~~H~STReRLp~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~   73 (200)
T 3fzg_A           19 IEDLLKIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEK   73 (200)
T ss_dssp             HHHHHHHSHHHHTTGGGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCC
T ss_pred             HHHHHhhCCCHHHHhHhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCC
Confidence            55577765432  22333333442   1245789999999999999999888774

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=95.15  E-value=0.043  Score=33.46  Aligned_cols=47  Identities=19%  Similarity=0.167  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           19 ESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        19 ~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+.|+..+...   ....+++..........+|+|||.|+|.++..+++.
T Consensus         9 lr~~~~~~k~~---l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~   55 (313)
T 3bgv_A            9 LRNFNNWMKSV---LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG   55 (313)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT
T ss_pred             hhhccHHHHHH---HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc
Confidence            44566666542   223344433311235679999999999999988864

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=95.15  E-value=0.016  Score=35.14  Aligned_cols=32  Identities=6%  Similarity=0.014  Sum_probs=23.6

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++.++  . ...+|+|||.|+|.++..++++
T Consensus        72 ~~~~~~~~~--~-~~~~vLDlGcG~G~~~~~l~~~  103 (299)
T 3g2m_A           72 AREFATRTG--P-VSGPVLELAAGMGRLTFPFLDL  103 (299)
T ss_dssp             HHHHHHHHC--C-CCSCEEEETCTTTTTHHHHHTT
T ss_pred             HHHHHHhhC--C-CCCcEEEEeccCCHHHHHHHHc
Confidence            345555554  2 3349999999999999998875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=95.15  E-value=0.03  Score=34.78  Aligned_cols=35  Identities=31%  Similarity=0.211  Sum_probs=27.6

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++..+  .....+++|+|-|+|..+..+++++|
T Consensus        15 l~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~   49 (301)
T 1m6y_A           15 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCP   49 (301)
T ss_dssp             HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCT
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCC
Confidence            345555555  45567999999999999999999876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.14  E-value=0.018  Score=34.41  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=20.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..+++..+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~  143 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG  143 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC
Confidence            4567999999999999999887543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=95.14  E-value=0.034  Score=32.26  Aligned_cols=26  Identities=15%  Similarity=0.061  Sum_probs=22.1

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..++++.|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~   81 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQ   81 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSC
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCC
Confidence            34568999999999999999998754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.12  E-value=0.013  Score=36.77  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|+|..+..+++..|
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~  143 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHAS  143 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTT
T ss_pred             CCCEEEEECCCccHHHHHHHHcCC
Confidence            457999999999999999998654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=95.12  E-value=0.043  Score=32.63  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=24.4

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+++.++. .....+|+|||-|+|.++..++++
T Consensus        26 ~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~   58 (232)
T 3opn_A           26 EKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN   58 (232)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc
Confidence            455666651 223569999999999999998876

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.09  E-value=0.02  Score=32.95  Aligned_cols=23  Identities=22%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~   51 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK   51 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC
Confidence            35679999999999999999875

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.08  E-value=0.019  Score=34.13  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||.|+|.++..++++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~   67 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH   67 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc
Confidence            345689999999999999999886

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.08  E-value=0.013  Score=36.27  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|+|.++..+++..|
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~  118 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPS  118 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHcCC
Confidence            457999999999999999988654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.05  E-value=0.011  Score=36.29  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|+|.++..+++..|
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~  113 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDS  113 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTT
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCC
Confidence            347999999999999999988654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.03  E-value=0.026  Score=32.89  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||-|+|..+..+++..|
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~   80 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD   80 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC
Confidence            34567999999999999999988754

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=94.96  E-value=0.014  Score=34.56  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||.|+|.++..+++++|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~   88 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLN   88 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCC
Confidence            356899999999999999988754

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=94.95  E-value=0.015  Score=34.30  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=21.2

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|..+..++...|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~   93 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP   93 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC
Confidence            3567999999999999999887665

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=94.95  E-value=0.012  Score=35.86  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|.|..+..+++..|
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~  101 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKS  101 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTT
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCC
Confidence            457999999999999999987654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=94.94  E-value=0.032  Score=32.40  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~   74 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT   74 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc
Confidence            35679999999999999999875

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=94.93  E-value=0.012  Score=36.60  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|+|.++..+++..|
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~  139 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKS  139 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCC
Confidence            347999999999999999987654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=94.92  E-value=0.033  Score=31.59  Aligned_cols=25  Identities=12%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++++.+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~   65 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF   65 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC
Confidence            4567999999999999999988754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=94.89  E-value=0.016  Score=35.87  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|.|.++..+++..|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~  100 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPT  100 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTT
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCC
Confidence            447999999999999999988654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=94.87  E-value=0.043  Score=31.60  Aligned_cols=24  Identities=4%  Similarity=-0.195  Sum_probs=20.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||-|+|..+..++++
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~   43 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ   43 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC
Confidence            345679999999999999998875

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=94.87  E-value=0.027  Score=33.53  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=22.4

Q ss_pred             hC-CCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FK-GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~-~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .. ...+|+|||.|+|.++..++++.|
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~   72 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTK   72 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCC
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcC
Confidence            44 568999999999999999998765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=94.86  E-value=0.016  Score=33.66  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|+|.|+|.++..++++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~   95 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIV   95 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHH
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHh
Confidence            4456799999999999999999874

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=94.85  E-value=0.057  Score=30.73  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..+++.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~   81 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL   81 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC
Confidence            45679999999999999987763

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=94.83  E-value=0.03  Score=32.07  Aligned_cols=25  Identities=12%  Similarity=0.279  Sum_probs=20.9

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|||.|+|.++..++++.
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~   73 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC   73 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC
Confidence            4456799999999999999988753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=94.82  E-value=0.027  Score=31.88  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|+|.|+|.++..+++++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~   44 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLV   44 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHh
Confidence            3456799999999999999999875

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=94.82  E-value=0.017  Score=35.17  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||+|+|.++..+++.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~   96 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH   96 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC
Confidence            4579999999999999999876

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=94.80  E-value=0.013  Score=34.75  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=26.6

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|||.|+|.++..++++.
T Consensus        18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~   51 (245)
T 1yub_A           18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS   51 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC
Confidence            345666666  5567899999999999999888753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=94.75  E-value=0.019  Score=35.77  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||+|.|..+..+++..|
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~  131 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHES  131 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTT
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCC
Confidence            447999999999999999988654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.74  E-value=0.034  Score=31.55  Aligned_cols=21  Identities=33%  Similarity=0.465  Sum_probs=19.2

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+|+|||.|+|.++..++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~   62 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL   62 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT
T ss_pred             CCeEEEecCCCCHHHHHHHhc
Confidence            679999999999999999875

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=94.73  E-value=0.026  Score=32.25  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~   64 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA   64 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc
Confidence            34679999999999999999875

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=94.72  E-value=0.027  Score=34.80  Aligned_cols=51  Identities=14%  Similarity=0.035  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           18 LESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        18 ~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....|..+.-.........++...+  .....+|+|+|.|+|..+..+++..+
T Consensus        91 ~~~~~~~G~~~~qd~~s~l~~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~  141 (315)
T 1ixk_A           91 STPEFLTGLIYIQEASSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMR  141 (315)
T ss_dssp             GSHHHHTTSEEECCHHHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTT
T ss_pred             cChhHhcceEEEeCHHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhC
Confidence            3445555443333322222334444  45667999999999999999998754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=94.71  E-value=0.023  Score=31.85  Aligned_cols=23  Identities=22%  Similarity=0.148  Sum_probs=20.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~   43 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL   43 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh
Confidence            45679999999999999998875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=94.70  E-value=0.047  Score=32.07  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.4

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|||.|+|..+..+++..|
T Consensus        70 ~~~~~~vLdiG~G~G~~~~~la~~~~   95 (232)
T 3cbg_A           70 LTGAKQVLEIGVFRGYSALAMALQLP   95 (232)
T ss_dssp             HHTCCEEEEECCTTSHHHHHHHTTSC
T ss_pred             hcCCCEEEEecCCCCHHHHHHHHhCC
Confidence            34567999999999999999998876

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=94.66  E-value=0.022  Score=34.49  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=26.5

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|||-|+|.++..++++.
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~   51 (255)
T 3tqs_A           18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC   51 (255)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS
T ss_pred             HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC
Confidence            345666666  5667899999999999999988753

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=94.60  E-value=0.026  Score=33.03  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=19.4

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..+++.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~   81 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEA   81 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTS
T ss_pred             CCCCeEEEEeccCCHHHHHHHhc
Confidence            35679999999999999998664

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=94.59  E-value=0.035  Score=30.87  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=19.9

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~   52 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR   52 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc
Confidence            35579999999999999998876

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=94.53  E-value=0.069  Score=32.96  Aligned_cols=33  Identities=12%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..++...+  .....+|+|||.|+|.++..+++..
T Consensus        95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~  127 (336)
T 2b25_A           95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAV  127 (336)
T ss_dssp             HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHh
Confidence            34555555  5567899999999999999999873

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=94.53  E-value=0.045  Score=31.67  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=19.6

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|||.|+|.++..++++.
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~   59 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF   59 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC
Confidence            55799999999999999887753

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=94.49  E-value=0.064  Score=33.42  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=27.2

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +..++...+  |.....|+|+|.|+|.++..++...
T Consensus       192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~  225 (354)
T 3tma_A          192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTL  225 (354)
T ss_dssp             HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhh
Confidence            344555556  6777899999999999999998865

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=94.47  E-value=0.041  Score=34.12  Aligned_cols=23  Identities=35%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~   59 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH   59 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT
T ss_pred             cCCCEEEEecCccHHHHHHHHHC
Confidence            34579999999999999988875

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=94.46  E-value=0.026  Score=34.74  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=25.9

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++..+  .....+|+|||.|+|.++..++++
T Consensus        31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~   63 (299)
T 2h1r_A           31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL   63 (299)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc
Confidence            445666665  556789999999999999998865

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=94.45  E-value=0.021  Score=34.60  Aligned_cols=22  Identities=23%  Similarity=0.138  Sum_probs=19.1

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||+|+|.++.++++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~   93 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY   93 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC
Confidence            4479999999999999998865

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=94.45  E-value=0.07  Score=31.58  Aligned_cols=22  Identities=14%  Similarity=0.095  Sum_probs=19.5

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||-|+|..+..+++.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~  102 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDL  102 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh
Confidence            4479999999999999999886

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=94.45  E-value=0.075  Score=31.19  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             ceeEeecCCccHHHHHHHHhcC
Q 047240           49 KSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+|+|||.|+|..+..++++.|
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~   79 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLA   79 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSC
T ss_pred             CCEEEEcCCchHHHHHHHHhCC
Confidence            3899999999999999999875

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=94.44  E-value=0.027  Score=33.99  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|||-|+|.++..++++.
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~   61 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF   61 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC
Confidence            45789999999999999998765

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=94.43  E-value=0.068  Score=29.71  Aligned_cols=23  Identities=17%  Similarity=0.141  Sum_probs=19.5

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|+|.|+|.++..++++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~   65 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR   65 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc
Confidence            35679999999999999988764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=94.33  E-value=0.027  Score=33.42  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.5

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++++.|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~  108 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP  108 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC
Confidence            3567999999999999999998765

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.30  E-value=0.059  Score=31.81  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=19.7

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|+|.|+|.++..+++.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~   72 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLL   72 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999886

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=94.25  E-value=0.096  Score=29.48  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=19.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|+|.|+|.++..++++
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~   65 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR   65 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC
Confidence            35579999999999999987764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.24  E-value=0.059  Score=31.08  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=17.2

Q ss_pred             CceeEeecCCccHHHHHHHH
Q 047240           48 LKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~   67 (71)
                      ..+|+|||.|+|.++..+++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~   67 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKI   67 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTC
T ss_pred             CCcEEEeCCCCCHHHHHHHH
Confidence            67999999999999887753

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=94.19  E-value=0.056  Score=30.76  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|+|.|+|.++..+++..
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~   71 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLG   71 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcC
Confidence            45799999999999999998763

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=94.18  E-value=0.08  Score=32.03  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=19.5

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..+++.
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~  100 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA  100 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT
T ss_pred             cCCCeEEEecccccHHHHHHHHc
Confidence            45579999999999999988775

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=94.10  E-value=0.067  Score=31.06  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|.++..+++..
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~  106 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYI  106 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHhc
Confidence            445799999999999999988754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=94.07  E-value=0.026  Score=33.06  Aligned_cols=23  Identities=22%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|||.|+|.++..++++.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~  101 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL  101 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc
Confidence            36799999999999999887754

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=94.04  E-value=0.065  Score=33.89  Aligned_cols=25  Identities=32%  Similarity=0.301  Sum_probs=21.2

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|||.|+|.++..++++.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g   85 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG   85 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC
Confidence            4556899999999999999988763

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=93.97  E-value=0.056  Score=34.12  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|||.|+|.++..+++.+
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~  105 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLV  105 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCEEEEecCccCHHHHHHHHHh
Confidence            45799999999999999999876

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=93.96  E-value=0.046  Score=34.22  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||.|+|.++..++++
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~   87 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA   87 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC
Confidence            345689999999999999998876

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=93.86  E-value=0.053  Score=31.14  Aligned_cols=23  Identities=13%  Similarity=0.096  Sum_probs=19.2

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|+|.|+|.++..++++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~   75 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ   75 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc
Confidence            44789999999999999877654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=93.79  E-value=0.098  Score=30.03  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=19.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|+|.|+|.++..++++.
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~   76 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY   76 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC
Confidence            45799999999999999877654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=93.68  E-value=0.051  Score=31.58  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=19.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~   69 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ   69 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc
Confidence            35579999999999999988875

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=93.67  E-value=0.043  Score=34.60  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=20.1

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+||| |+|.++..+++..|
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~  194 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL  194 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC
Confidence            357999999 99999999988766

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=93.65  E-value=0.042  Score=31.10  Aligned_cols=19  Identities=21%  Similarity=0.246  Sum_probs=17.3

Q ss_pred             eeEeecCCccHHHHHHHHh
Q 047240           50 SLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        50 ~vvDvGGg~G~~~~~l~~~   68 (71)
                      +|+|||.|+|.++..++++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~   50 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL   50 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT
T ss_pred             CEEEECCCCCHhHHHHHhC
Confidence            9999999999999888764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=93.57  E-value=0.15  Score=29.35  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|.++..+++..
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~  102 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKM  102 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHh
Confidence            456799999999999999998875

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=93.51  E-value=0.061  Score=30.53  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|+|.|+|.++..+++.
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~   72 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL   72 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc
Confidence            35579999999999999998875

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=93.46  E-value=0.056  Score=32.01  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||.|+|.++..++++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~   75 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER   75 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc
Confidence            5679999999999999988865

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=93.44  E-value=0.044  Score=33.13  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=22.4

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|+|.|+|.++..++++.|
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~  142 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSK  142 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCC
Confidence            34567999999999999999998865

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=93.42  E-value=0.15  Score=32.11  Aligned_cols=34  Identities=9%  Similarity=0.075  Sum_probs=25.2

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  .....+|+|+|.|+|.++.++++++
T Consensus        28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~   61 (421)
T 2ih2_A           28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAH   61 (421)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHH
T ss_pred             HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHh
Confidence            344555554  3345699999999999999999865

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=93.24  E-value=0.068  Score=31.15  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=19.8

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||.|+|.++..++++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~   99 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT   99 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT
T ss_pred             CCCEEEECccccCHHHHHHHHc
Confidence            5679999999999999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=93.20  E-value=0.052  Score=32.63  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=21.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|+|.|+|.++..+++..
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~V   99 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDII   99 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHh
Confidence            5567899999999999999998763

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=93.16  E-value=0.049  Score=32.86  Aligned_cols=26  Identities=12%  Similarity=0.077  Sum_probs=21.8

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|+|.|+|..+..+++..+
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~  106 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMK  106 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTT
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcC
Confidence            34567999999999999999998654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=93.16  E-value=0.18  Score=31.26  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=24.7

Q ss_pred             HHHHHHhchhhhC-CCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFK-GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~-~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+++.+.  .. ...+++|||-|+|.++..++++
T Consensus        73 l~~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~  106 (291)
T 3hp7_A           73 LEKALAVFN--LSVEDMITIDIGASTGGFTDVMLQN  106 (291)
T ss_dssp             HHHHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHHhcC--CCccccEEEecCCCccHHHHHHHhC
Confidence            345566665  33 4569999999999999888775

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=93.15  E-value=0.26  Score=32.29  Aligned_cols=21  Identities=29%  Similarity=0.635  Sum_probs=18.7

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...||++|.|+|.++..|++.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~  158 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTA  158 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHH
Confidence            469999999999999999865

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=93.12  E-value=0.1  Score=31.51  Aligned_cols=30  Identities=10%  Similarity=0.223  Sum_probs=22.5

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHH
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIA   66 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~   66 (71)
                      ...+++..+  .....+|+|||-|+|.++. +.
T Consensus        10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~   39 (252)
T 1qyr_A           10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV   39 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh
Confidence            345566655  5566799999999999988 54

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=93.12  E-value=0.026  Score=34.31  Aligned_cols=26  Identities=12%  Similarity=-0.041  Sum_probs=20.6

Q ss_pred             hCCCceeEeecCCccHHHHHHH-HhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIA-TGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~-~~~P   70 (71)
                      .....+|+|||.|+|.++..++ ..+|
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~  142 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACP  142 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCT
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCC
Confidence            3566899999999999999885 4444

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=93.11  E-value=0.19  Score=28.89  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|..+..+++..
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~   99 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMV   99 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHh
Confidence            355799999999999999998764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=93.07  E-value=0.084  Score=33.81  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=18.1

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..++|+|||-|+|.++...+++
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~a  104 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQA  104 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCEEEEeCCCccHHHHHHHHh
Confidence            4478999999999998777664

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=92.72  E-value=0.084  Score=30.64  Aligned_cols=19  Identities=26%  Similarity=0.263  Sum_probs=17.0

Q ss_pred             ceeEeecCCccHHHHHHHH
Q 047240           49 KSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~   67 (71)
                      .+|+|||.|+|.++..+++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~   86 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMAS   86 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCB
T ss_pred             CCEEEeCCCCCHHHHHHHh
Confidence            5999999999999998865

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=92.61  E-value=0.086  Score=34.13  Aligned_cols=26  Identities=19%  Similarity=0.172  Sum_probs=22.1

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|+|.|+|..+..+++..|
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~  282 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMK  282 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTT
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcC
Confidence            44567999999999999999998765

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=92.57  E-value=0.13  Score=29.70  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             hCCCceeEeecCC-ccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGG-TGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg-~G~~~~~l~~~   68 (71)
                      .....+|+|||.| +|.++..+++.
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~   77 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKF   77 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHH
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHh
Confidence            3466899999999 99999998876

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=92.51  E-value=0.15  Score=31.17  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||-|+|.++..++++
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~  103 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ  103 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc
Confidence            345679999999999999888764

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=92.26  E-value=0.18  Score=30.52  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||-|+|.++..++++
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~   95 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR   95 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc
Confidence            345679999999999999887763

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=92.05  E-value=0.099  Score=32.34  Aligned_cols=24  Identities=21%  Similarity=0.183  Sum_probs=20.1

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      +....+|+|||-|+|.++..++++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~  103 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL  103 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc
Confidence            345679999999999999888765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=92.02  E-value=0.094  Score=31.25  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=19.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..+++.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~   85 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA   85 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC
Confidence            45679999999999988887764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=91.93  E-value=0.096  Score=31.67  Aligned_cols=25  Identities=28%  Similarity=0.174  Sum_probs=21.4

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|+|.|+|.++..++++.+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~  148 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK  148 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC
Confidence            3467999999999999999998764

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=91.74  E-value=0.46  Score=29.01  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             hhhhhhc--CcchHHHHHHHHHhc-chh-----hHHHHHHh-chhhhCCCceeEeecCCccH----HHHHHHHhcC
Q 047240            8 FWDFVAA--EPNLESIFYDAMIAD-SEL-----ITIVVIED-CKEVFKGLKSLVDVGGGTGT----MARAIATGFL   70 (71)
Q Consensus         8 ~f~~~~~--~p~~~~~F~~~M~~~-~~~-----~~~~~~~~-~d~~~~~~~~vvDvGGg~G~----~~~~l~~~~P   70 (71)
                      +++++..  +++....|...+... +..     ....+.+. .|  -.+..+|.|+|.|+|.    +++.+++..|
T Consensus        59 y~~~l~~~~~~~e~~~l~~~lt~~~t~FfRd~~~f~~l~~~llp--~~~~~rIld~GCgTGee~ysiAi~L~e~~~  132 (274)
T 1af7_A           59 YLSMLEANQNSAEWQAFINALTTNLTAFFREAHHFPILAEHARR--RHGEYRVWSAAASTGEEPYSIAITLADALG  132 (274)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHCCCCCCTTTTTTHHHHHHHHHHH--SCSCEEEEESCCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHccCCCHHHHHHHHHHHhhcCccccCChHHHHHHHHHccC--CCCCcEEEEeeccCChhHHHHHHHHHHhcc
Confidence            5566654  677778888877432 111     01111111 23  1234689999999998    4555555533

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=91.56  E-value=0.16  Score=32.10  Aligned_cols=25  Identities=24%  Similarity=0.155  Sum_probs=21.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|+|-|+|.++..+++..+
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~  240 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRY  240 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCC
Confidence            4667999999999999999988765

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=91.24  E-value=0.18  Score=32.49  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|+|.|+|.++..++++
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~  307 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ  307 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh
Confidence            345679999999999999998865

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=91.13  E-value=0.2  Score=30.28  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=20.1

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|+|.|+|.++..+++.
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~  104 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL  104 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh
Confidence            344579999999999999988874

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=90.94  E-value=0.33  Score=30.16  Aligned_cols=34  Identities=24%  Similarity=0.091  Sum_probs=25.2

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+.+.|-  +....+|||+|.+.|..+.-.+++.
T Consensus        79 L~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~  112 (282)
T 3gcz_A           79 LRWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLK  112 (282)
T ss_dssp             HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTST
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc
Confidence            345556654  5666799999999999999776543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=90.83  E-value=0.25  Score=29.51  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=20.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|+|-|+|..+..+++.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~   97 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDI   97 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHH
Confidence            456689999999999999988875

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=90.70  E-value=0.12  Score=33.21  Aligned_cols=25  Identities=12%  Similarity=0.098  Sum_probs=21.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|+|.|+|..+..+++..|
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~  269 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAP  269 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCT
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcC
Confidence            4557999999999999999998776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=90.67  E-value=0.37  Score=32.11  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.0

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..-+|+|||.|.|.++..+++.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~   87 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK   87 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCeEEEECCCCcHHHHHHHhC
Confidence            4458999999999999999875

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=90.60  E-value=0.32  Score=29.56  Aligned_cols=32  Identities=28%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             HHHHHhchhhhCCC--ceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGL--KSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~--~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+.+...  ....  .+|+|++.|.|..+..++++
T Consensus        76 e~l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~  109 (258)
T 2oyr_A           76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV  109 (258)
T ss_dssp             SHHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH
T ss_pred             HHHHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc
Confidence            44555554  4444  79999999999999988875

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=90.25  E-value=0.27  Score=35.18  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=24.3

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +++...  .....+|+|||-|+|.++..+++..
T Consensus       713 LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g  743 (950)
T 3htx_A          713 ALKHIR--ESSASTLVDFGCGSGSLLDSLLDYP  743 (950)
T ss_dssp             HHHHHH--HSCCSEEEEETCSSSHHHHHHTSSC
T ss_pred             HHHHhc--ccCCCEEEEECCCCCHHHHHHHHhC
Confidence            344444  3466899999999999999998876

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=90.07  E-value=0.34  Score=31.08  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=20.3

Q ss_pred             CCCceeEeecCCccHHHHHHH-HhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIA-TGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~-~~~P   70 (71)
                      ....++||||.+.|..+..++ +..|
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~  250 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKG  250 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcC
Confidence            456899999999999999887 4443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=89.96  E-value=0.46  Score=29.45  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=19.9

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      +....+|||+|.|+|..+.-++++
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~   95 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQ   95 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHh
Confidence            556679999999999999977654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=89.67  E-value=0.55  Score=30.05  Aligned_cols=33  Identities=15%  Similarity=0.115  Sum_probs=25.8

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      +..++..-.  |.....|+|.+-|+|+++++.+..
T Consensus       190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~  222 (393)
T 3k0b_A          190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALI  222 (393)
T ss_dssp             HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHH
Confidence            345566666  677789999999999999887754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=89.66  E-value=0.19  Score=28.52  Aligned_cols=19  Identities=42%  Similarity=0.613  Sum_probs=16.3

Q ss_pred             CCceeEeecCCccHHHHHH
Q 047240           47 GLKSLVDVGGGTGTMARAI   65 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l   65 (71)
                      ...+|+|||.|+|.++..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l   54 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL   54 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC
T ss_pred             CCCeEEEECCCCCHhHHhC
Confidence            5679999999999988765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=89.65  E-value=0.23  Score=29.79  Aligned_cols=22  Identities=9%  Similarity=-0.174  Sum_probs=19.4

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|||-|+|..+..|+++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~   89 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR   89 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC
Confidence            5679999999999999998875

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=89.58  E-value=0.69  Score=29.85  Aligned_cols=20  Identities=30%  Similarity=0.536  Sum_probs=17.8

Q ss_pred             ceeEeecCCccHHHHHHHHh
Q 047240           49 KSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~   68 (71)
                      -.||++|.|.|.++..|++.
T Consensus        82 ~~ivElGaG~GtLa~diL~~  101 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRA  101 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHH
T ss_pred             cEEEEECCCcchHHHHHHHH
Confidence            47999999999999998865

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=89.38  E-value=0.39  Score=30.57  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|+|.|+|.++..++++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~  254 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM  254 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc
Confidence            4569999999999999998875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=89.09  E-value=0.33  Score=30.25  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=18.2

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ....+|+|||.|+|.++..++.+.|
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~  145 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVY  145 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTT
T ss_pred             CCcCEEEEECCCccHHHHHHHHHcc
Confidence            4568999999999877655555444

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=88.84  E-value=0.55  Score=29.91  Aligned_cols=33  Identities=27%  Similarity=0.169  Sum_probs=25.8

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      +..++....  |.....|+|++-|+|.++++.+..
T Consensus       184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~  216 (385)
T 3ldu_A          184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMI  216 (385)
T ss_dssp             HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHH
T ss_pred             HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHH
Confidence            344556666  677789999999999999988764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=88.83  E-value=0.37  Score=30.07  Aligned_cols=23  Identities=17%  Similarity=0.069  Sum_probs=19.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|+|.|+|.++..+++..
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g  175 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG  175 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCcEEEcccccCHHHHHHHHcC
Confidence            34699999999999999998753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=88.18  E-value=0.27  Score=32.35  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=22.0

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|+|-|+|..+..+++..+
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~  124 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMG  124 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTT
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCC
Confidence            34567999999999999999998765

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=88.06  E-value=0.3  Score=31.66  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=18.4

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+|+|+|+|+|..+..+++.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~  114 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK  114 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT
T ss_pred             CCEEEEeCCCchHHHHHHHhc
Confidence            579999999999999888764

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=87.59  E-value=0.28  Score=30.45  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=20.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|+|-|+|.++..+++..|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~  153 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLE  153 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHH
Confidence            457999999999999999987653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=87.41  E-value=0.83  Score=29.18  Aligned_cols=33  Identities=24%  Similarity=0.184  Sum_probs=25.8

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      +..++..-.  |.....|+|.+-|+|+++++.+..
T Consensus       183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~  215 (384)
T 3ldg_A          183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMI  215 (384)
T ss_dssp             HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHH
Confidence            345566666  677889999999999999887754

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=87.20  E-value=0.56  Score=29.90  Aligned_cols=24  Identities=21%  Similarity=0.079  Sum_probs=20.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|+|.|+|..+..++++.|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~   70 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP   70 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC
Confidence            356899999999999999998754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=86.67  E-value=0.3  Score=27.55  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=15.9

Q ss_pred             CCCceeEeecCCccHHHHHHH
Q 047240           46 KGLKSLVDVGGGTGTMARAIA   66 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~   66 (71)
                      ....+|+|||.|+|.....++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~   42 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIF   42 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHH
Confidence            345799999999998744443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=86.63  E-value=1.2  Score=28.39  Aligned_cols=21  Identities=14%  Similarity=0.148  Sum_probs=19.2

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+||+||-|.|.+...|+++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~   79 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNK   79 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHhh
Confidence            478999999999999999975

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=86.44  E-value=0.078  Score=31.08  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=19.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||.|+|.++..+++..
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~   78 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACES   78 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGT
T ss_pred             cCCCEEEEECCCccHHHHHHhhcc
Confidence            345799999999999887776654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=86.30  E-value=0.69  Score=29.89  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|+|.|+|.++..+++.
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~  311 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR  311 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT
T ss_pred             CCCCEEEEeeccchHHHHHHHHc
Confidence            45679999999999999998875

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=86.06  E-value=0.39  Score=31.47  Aligned_cols=26  Identities=15%  Similarity=0.188  Sum_probs=21.5

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....+|+|+|.|+|..+..+++..+
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~  128 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMK  128 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcC
Confidence            34567999999999999999987644

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=85.90  E-value=0.61  Score=30.90  Aligned_cols=20  Identities=40%  Similarity=0.615  Sum_probs=13.5

Q ss_pred             HHHhchhhhCCCceeEeecCCc
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGT   58 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~   58 (71)
                      +...++  ..+...|+|||||+
T Consensus       129 v~~~~~--~~~~~lviDIGGGS  148 (513)
T 1u6z_A          129 VEHTQP--EKGRKLVIDIGGGS  148 (513)
T ss_dssp             HHHHSC--CCSCEEEEEECSSC
T ss_pred             HHhhcc--CCCCEEEEEECCCc
Confidence            344444  33357999999986

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=85.36  E-value=1.2  Score=27.11  Aligned_cols=22  Identities=32%  Similarity=0.114  Sum_probs=18.8

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|++.|+|+.+.++++.
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~  256 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW  256 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHc
Confidence            4569999999999999988764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=84.78  E-value=0.74  Score=29.18  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=19.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|+|.|+|.++..++++
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~  233 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG  233 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC
Confidence            34579999999999999999874

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=84.69  E-value=0.78  Score=28.92  Aligned_cols=22  Identities=27%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|+|.|+|.++..+++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~  230 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG  230 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh
Confidence            4579999999999999998875

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=84.30  E-value=0.87  Score=28.27  Aligned_cols=12  Identities=33%  Similarity=0.803  Sum_probs=9.9

Q ss_pred             CCceeEeecCCc
Q 047240           47 GLKSLVDVGGGT   58 (71)
Q Consensus        47 ~~~~vvDvGGg~   58 (71)
                      ....|+|||||+
T Consensus       131 ~~~lviDIGGGS  142 (315)
T 3mdq_A          131 HISLAMDIGGGS  142 (315)
T ss_dssp             CCEEEEEECSSC
T ss_pred             CCEEEEEeCCCc
Confidence            456899999986

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=83.78  E-value=0.9  Score=28.69  Aligned_cols=22  Identities=27%  Similarity=0.093  Sum_probs=19.7

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+|+|+|.|+|.++..+++.
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~  238 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA  238 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT
T ss_pred             CCCeEEEecCCCCHHHHHHHHC
Confidence            5679999999999999999875

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=83.44  E-value=1.5  Score=28.19  Aligned_cols=31  Identities=13%  Similarity=0.068  Sum_probs=22.4

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+++..+  .....+|+|.|-|+|.++..+++.
T Consensus       162 ~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~  192 (445)
T 2okc_A          162 AMVDCIN--PQMGETVCDPACGTGGFLLTAYDY  192 (445)
T ss_dssp             HHHHHHC--CCTTCCEEETTCTTCHHHHHHHHH
T ss_pred             HHHHHhC--CCCCCEEeccCCCcchHHHHHHHH
Confidence            3444443  334569999999999999988764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=83.22  E-value=0.39  Score=28.75  Aligned_cols=16  Identities=25%  Similarity=0.569  Sum_probs=13.2

Q ss_pred             CCceeEeecCCccHHH
Q 047240           47 GLKSLVDVGGGTGTMA   62 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~   62 (71)
                      ...+|+|||.|+|..+
T Consensus        71 ~~~~vLDiGcG~G~~~   86 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ   86 (289)
T ss_dssp             CCSEEEEETCTTCCGG
T ss_pred             CCCeEEEECCCcChHH
Confidence            4579999999999843

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=83.20  E-value=0.95  Score=28.98  Aligned_cols=22  Identities=23%  Similarity=0.040  Sum_probs=19.5

Q ss_pred             CceeEeecCCccHHHHHHHHhc
Q 047240           48 LKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+|+|+|.|+|.++..+++..
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~g  236 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKG  236 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTT
T ss_pred             CCeEEEcccchhHHHHHHHHcC
Confidence            6799999999999999998753

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=83.03  E-value=0.82  Score=28.93  Aligned_cols=23  Identities=22%  Similarity=0.141  Sum_probs=19.9

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|+|.|+|.++..+++.
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~  241 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMG  241 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHT
T ss_pred             hCCCeEEEeeccCCHHHHHHHHC
Confidence            35579999999999999999875

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=82.98  E-value=0.61  Score=28.61  Aligned_cols=21  Identities=14%  Similarity=0.221  Sum_probs=16.3

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+|+|||-|+|..+..+++.
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~   69 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYG   69 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHT
T ss_pred             CCeEEEEecCCcHhHHHHHhc
Confidence            578999999999766655543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=82.59  E-value=2.1  Score=26.89  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=17.8

Q ss_pred             ceeEeecCCccHHHHHHHHh
Q 047240           49 KSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        49 ~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .+|+|++.|+|.++..+++.
T Consensus       215 ~~vLDl~cG~G~~~l~la~~  234 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARN  234 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGG
T ss_pred             CEEEEccCCCCHHHHHHHhc
Confidence            67999999999999988764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=82.04  E-value=0.58  Score=28.70  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|+|.|+|.++..++++
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~  146 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVY  146 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHH
T ss_pred             CCCCEEEEecCcCcHHHHHHHHh
Confidence            35679999999999999888765

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=81.58  E-value=1.5  Score=28.80  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=20.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|+|-|+|..+..+++..+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~  140 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMN  140 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCC
Confidence            567999999999999999998653

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=81.52  E-value=1.2  Score=27.99  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      +....++||+|.++|..+.-++++
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~  102 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQ  102 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTS
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHh
Confidence            456789999999999999988864

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=81.24  E-value=1.4  Score=29.39  Aligned_cols=23  Identities=13%  Similarity=0.050  Sum_probs=19.1

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|.+-|+|.++..+.+.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~  190 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRY  190 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHH
T ss_pred             CCCCeEecCCcccchHHHHHHHH
Confidence            34569999999999999888764

>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A

Probab=80.38  E-value=1.5  Score=24.06  Aligned_cols=26  Identities=12%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             ChhhhhhcCcchHHHHHHHHHhcchh
Q 047240            7 KFWDFVAAEPNLESIFYDAMIADSEL   32 (71)
Q Consensus         7 ~~f~~~~~~p~~~~~F~~~M~~~~~~   32 (71)
                      ++|.|+.++|++.+.+..+.......
T Consensus        45 T~~~W~~~~~ef~e~~~~Ar~~~~~~   70 (140)
T 4dyq_A           45 TVFRWLAKHEDFRDKYAKATEARADS   70 (140)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            58999999999999999997764443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	5e-13
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	2e-11
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	1e-10
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	5e-09
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	6e-09

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 59.0 bits (142), Expect = 5e-13
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
             T    FWDF+   P   + F DAM +DS+LI  + + DC  VF GL+S+VDVGGGTGT
Sbjct: 35  GVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN-LALRDCDFVFDGLESIVDVGGGTGT 93

Query: 61  MARAIATGF 69
            A+ I   F
Sbjct: 94  TAKIICETF 102

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 54.6 bits (130), Expect = 2e-11
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
              + + FW+ ++A+  L   F   M  D +L      +     +  ++ ++DVGGG G 
Sbjct: 37  AGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGG 94

Query: 61  MARAIA 66
           M  AIA
Sbjct: 95  MLAAIA 100

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 52.8 bits (126), Expect = 1e-10
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
           +       ++F+  +  +  IF  +M+         ++E     F+G+ +LVDVGGG+G 
Sbjct: 36  KNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE-IYTGFEGISTLVDVGGGSGR 94

Query: 61  MARAIATGF 69
               I + +
Sbjct: 95  NLELIISKY 103

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 48.1 bits (113), Expect = 5e-09
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 1  QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
          ++ + K F++ +A  P+L + F   +  D ++            +  ++ ++DVGGG G 
Sbjct: 36 ESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGG 93

Query: 61 MARAI 65
           A AI
Sbjct: 94 FAAAI 98

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 47.9 bits (113), Expect = 6e-09
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 1   QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60
              +    +++   +P    +F   M   S +    ++E     F+GLKSLVDVGGGTG 
Sbjct: 36  NKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEGLKSLVDVGGGTGA 94

Query: 61  MARAIATGF 69
           +   I + +
Sbjct: 95  VINTIVSKY 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.84
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.82
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.79
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.75
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.72
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.69
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.12
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.03
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.01
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.01
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	96.89
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.84
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	96.75
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.64
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.46
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.34
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.3
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.25
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.19
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.17
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.17
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.14
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.13
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	96.1
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.09
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.09
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	96.07
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.04
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.95
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.88
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.87
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.87
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	95.82
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.81
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	95.76
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	95.75
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.41
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.16
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	94.86
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	94.75
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	94.74
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	94.72
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	94.72
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	94.61
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	94.6
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	94.5
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	94.48
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	94.3
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.22
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	94.2
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	94.13
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	93.71
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	93.67
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.48
d2h00a1	250	Methyltransferase 10 domain containing protein MET	93.28
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	93.24
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	92.71
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.3
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	92.19
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	91.92
d1u6za3	177	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	91.66
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	91.46
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	91.26
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	90.13
d1t6ca2	180	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	89.93
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	89.76
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	89.74
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	89.39
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	89.1
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	88.97
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.06
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	86.36
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	86.32
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	85.51
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	85.2
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	84.4
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	84.12
d2fsja1	161	Hypothetical protein Ta0583 {Archaeon Thermoplasma	84.08
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	83.92
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	83.61
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	83.42
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	81.88
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	81.69
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	81.49
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	80.73
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	80.32
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	80.25

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.84  E-value=1.8e-21  Score=117.03  Aligned_cols=70  Identities=23%  Similarity=0.444  Sum_probs=57.4

Q ss_pred             CccCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            1 QTTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         1 ~~~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      |.+||.++|||+.+||+..+.|+++|.+.+....+.+++.|| .|++..+|||||||+|+++.+|+++||+
T Consensus        36 ~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~~~~~vlDiGGG~G~~~~~l~~~~P~  105 (244)
T d1fp1d2          36 KNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPL  105 (244)
T ss_dssp             ----------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             HHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCcEEEEecCCCcHHHHHHHHHCCC
Confidence            457899999999999999999999999999998999999998 4799999999999999999999999996

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.82  E-value=7.5e-21  Score=113.99  Aligned_cols=69  Identities=29%  Similarity=0.597  Sum_probs=64.0

Q ss_pred             ccCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            2 TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         2 ~~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+||+++|+|+.++|+..+.|+++|...+....+.+++.|++ +++..+|||||||+|+++.+|+++||+
T Consensus        37 ~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~~~~~~vvDvGGG~G~~~~~l~~~~P~  105 (243)
T d1kyza2          37 KAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEGLKSLVDVGGGTGAVINTIVSKYPT  105 (243)
T ss_dssp             HHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSSCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             hhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-ccCCcEEEEecCCCcHHHHHHHHHCCC
Confidence            467899999999999999999999999998888999999994 567899999999999999999999996

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.79  E-value=3.4e-20  Score=111.39  Aligned_cols=69  Identities=46%  Similarity=0.839  Sum_probs=60.7

Q ss_pred             ccCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            2 TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         2 ~~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+||+++|+|+.+||+..+.|+++|...+......+.+ +.+.|++..+|||||||+|+++.+++++||+
T Consensus        36 ~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~  104 (244)
T d1fp2a2          36 VTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDGLESIVDVGGGTGTTAKIICETFPK  104 (244)
T ss_dssp             HHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHHHHTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             HhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hcccccCceEEEEecCCccHHHHHHHHhCCC
Confidence            46799999999999999999999999988876666654 3334899999999999999999999999996

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.75  E-value=2.2e-19  Score=108.08  Aligned_cols=68  Identities=26%  Similarity=0.456  Sum_probs=64.3

Q ss_pred             ccCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            2 TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         2 ~~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .++|.++|+|+.++|+..+.|+++|...+....+.+++.||  |++..+|||||||+|.++.+|+++||+
T Consensus        38 ~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~vlDvG~G~G~~~~~l~~~~P~  105 (256)
T d1qzza2          38 GRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPH  105 (256)
T ss_dssp             HHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             hhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC--CccCCEEEEECCCCCHHHHHHHHhhcC
Confidence            35789999999999999999999999999888899999999  999999999999999999999999995

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.72  E-value=1.9e-18  Score=103.43  Aligned_cols=68  Identities=25%  Similarity=0.447  Sum_probs=64.3

Q ss_pred             ccCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240            2 TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus         2 ~~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .++|+++|+|+.++|+..+.|+.+|...+....+.+++.||  |++..+|||||+|+|.++..+++++|+
T Consensus        37 ~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~p~  104 (253)
T d1tw3a2          37 SIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPH  104 (253)
T ss_dssp             HHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             hccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhcce
Confidence            35789999999999999999999999998888899999999  999999999999999999999999995

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.69  E-value=2.6e-05  Score=45.95  Aligned_cols=54  Identities=20%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             CcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           15 EPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        15 ~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      +|.....+..++..........+....+  .+...+|+|||.|+|.++..+++++.
T Consensus        37 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~~   90 (282)
T d2o57a1          37 EPVDQDEIREASLRTDEWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKFG   90 (282)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccCC
Confidence            3444444455555444444556666666  77889999999999999999988753

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00046  Score=39.58  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=29.3

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+.+...  +....+|+|||.|+|..+..++++++
T Consensus        22 ~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~   56 (245)
T d1nkva_          22 YATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG   56 (245)
T ss_dssp             HHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC
T ss_pred             HHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC
Confidence            455777777  77788999999999999999988765

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.03  E-value=0.00031  Score=40.06  Aligned_cols=34  Identities=21%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .-+++..+  +....+|+|||.|+|.++..++++.+
T Consensus         6 ~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~~   39 (234)
T d1xxla_           6 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ   39 (234)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS
T ss_pred             HHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhCC
Confidence            34678888  88889999999999999999988754

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.01  E-value=0.00032  Score=39.59  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=27.7

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  ..+..+|+|||.|+|.++..++++.+
T Consensus         5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~~   38 (231)
T d1vl5a_           5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK   38 (231)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS
T ss_pred             HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhCC
Confidence            45666666  77788999999999999999987653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.01  E-value=0.00035  Score=39.05  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=27.5

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  -....+|+|||.|+|.++..+++..|
T Consensus        42 ~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~   75 (194)
T d1dusa_          42 KILVENVV--VDKDDDILDLGCGYGVIGIALADEVK   75 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS
T ss_pred             HHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc
Confidence            34566666  55678999999999999999988776

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.89  E-value=0.00068  Score=38.58  Aligned_cols=25  Identities=20%  Similarity=0.225  Sum_probs=22.9

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+.++|||-|+|..+..+++++|+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~   53 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPD   53 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTT
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCC
Confidence            3578999999999999999999996

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.84  E-value=0.00068  Score=39.49  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=27.1

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  ..+..+++|||.|+|.++..++++++
T Consensus        83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~  116 (254)
T d1xtpa_          83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLY  116 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHC
T ss_pred             HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcC
Confidence            34556665  56778999999999999999987764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.75  E-value=0.00077  Score=38.35  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=23.0

Q ss_pred             CCceeEeecCCccHHHHHHHHhcCC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ..+.++|||-|.|.++..+++++|+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~   55 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPD   55 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCC
Confidence            4578999999999999999999996

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00061  Score=38.96  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=20.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+|+|||.|+|..+..++++.|
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~   76 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI   76 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC
Confidence            456899999999999999987654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.46  E-value=0.0017  Score=36.00  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=24.5

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ++....  +....+|+|||.|+|..+..++++.+
T Consensus        22 ~~~~~~--~~~~grvLDiGcG~G~~~~~la~~g~   53 (198)
T d2i6ga1          22 VLAAAK--VVAPGRTLDLGCGNGRNSLYLAANGY   53 (198)
T ss_dssp             HHHHHT--TSCSCEEEEETCTTSHHHHHHHHTTC
T ss_pred             HHHHcc--cCCCCcEEEECCCCCHHHHHHHHHhh
Confidence            444444  44556999999999999999998754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0022  Score=37.44  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=23.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ....+|+|||-|+|.++..+++++|+
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~  108 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPE  108 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTT
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCC
Confidence            45679999999999999999999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0029  Score=39.49  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=26.8

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++..+  .....+|+|||-|.|.++..+++.+|
T Consensus       206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g  239 (406)
T d1u2za_         206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG  239 (406)
T ss_dssp             HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred             HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcC
Confidence            34445554  55668999999999999999998876

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.0081  Score=33.71  Aligned_cols=24  Identities=13%  Similarity=0.216  Sum_probs=20.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|||-|+|..+..|++..
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~   61 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNI   61 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTC
T ss_pred             CCCCEEEEeccchhhHHHHHHHhh
Confidence            456799999999999999999863

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.19  E-value=0.0024  Score=35.27  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=25.8

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .++....  .....+|+|||-|+|.++.++++..+
T Consensus        24 ~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~~   56 (186)
T d1l3ia_          24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVR   56 (186)
T ss_dssp             HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTSS
T ss_pred             HHHHhcC--CCCCCEEEEEECCeEcccccccccce
Confidence            3444445  56778999999999999999987654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.17  E-value=0.005  Score=36.62  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++...  .....+|+|||-|.|.++..++++++
T Consensus        50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g   84 (291)
T d1kpia_          50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD   84 (291)
T ss_dssp             HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC
Confidence            345666666  77789999999999999999999886

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0092  Score=35.25  Aligned_cols=26  Identities=31%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+..+|+|||.|+|.++..++++.+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga   58 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA   58 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC
Confidence            44568999999999999998888654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.14  E-value=0.0031  Score=37.26  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++..+  .....+|+|||.|.|.++..++++++
T Consensus        41 ~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g   75 (280)
T d2fk8a1          41 VDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD   75 (280)
T ss_dssp             HHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred             HHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc
Confidence            345677776  77789999999999999999888765

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.13  E-value=0.0033  Score=37.34  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=29.0

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++...  .....+|+|||.|.|.++..++++++
T Consensus        51 ~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g   85 (285)
T d1kpga_          51 IDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD   85 (285)
T ss_dssp             HHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             HHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC
Confidence            345666666  67789999999999999999998875

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0044  Score=34.84  Aligned_cols=36  Identities=31%  Similarity=0.164  Sum_probs=29.7

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ...+++..+  -....++||++-|+|..+.+|++++|+
T Consensus        12 l~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~   47 (192)
T d1m6ya2          12 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPG   47 (192)
T ss_dssp             HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTT
T ss_pred             HHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCC
Confidence            455666665  456789999999999999999999985

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0014  Score=36.95  Aligned_cols=25  Identities=20%  Similarity=0.511  Sum_probs=21.0

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+..+|+|||.|+|.++..++++.+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~   83 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLF   83 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcC
Confidence            4567999999999999999877654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.09  E-value=0.0041  Score=35.21  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=24.8

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .++..+.  .....+|+|||.|+|..+..++++.
T Consensus        32 ~~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~~   63 (251)
T d1wzna1          32 EIFKEDA--KREVRRVLDLACGTGIPTLELAERG   63 (251)
T ss_dssp             HHHHHTC--SSCCCEEEEETCTTCHHHHHHHHTT
T ss_pred             HHHHHhc--CCCCCEEEEeCCCCCccchhhcccc
Confidence            3444444  4566799999999999999998764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.0041  Score=34.41  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=17.5

Q ss_pred             CCCceeEeecCCccHHHHHHHH
Q 047240           46 KGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      ....+|+|||.|+|.++..+.+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~~   56 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLKI   56 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHTC
T ss_pred             CCCCeEEEECCCCcccccccce
Confidence            3445899999999998887754

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0066  Score=35.93  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .....|+|+|.|+|..+..+++.+|+
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~  132 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPD  132 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCc
Confidence            34467999999999999999999985

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.95  E-value=0.0077  Score=34.06  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=24.2

Q ss_pred             HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +++..+  .....+|+|||.|+|..+..+++..
T Consensus        67 ~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~   97 (213)
T d1dl5a1          67 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVV   97 (213)
T ss_dssp             HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred             HHHhhh--ccccceEEEecCccchhHHHHHHHh
Confidence            344444  5566799999999999999988765

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.88  E-value=0.0024  Score=36.81  Aligned_cols=27  Identities=19%  Similarity=0.144  Sum_probs=24.0

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .....+|+|||-|+|..+..|++..|+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~   98 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADK   98 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTT
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCC
Confidence            566789999999999999999998774

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.87  E-value=0.0061  Score=36.25  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|||.|+|.++..++++.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~G   55 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAG   55 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT
T ss_pred             CcCEEEEEecCCcHHHHHHHHhC
Confidence            45789999999999998888754

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0073  Score=36.24  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=26.9

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+++...  .....+|+|||-|.|.++..+++.+|
T Consensus       141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~  174 (328)
T d1nw3a_         141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN  174 (328)
T ss_dssp             HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCC
T ss_pred             HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhC
Confidence            34455554  55678999999999999999998876

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=95.82  E-value=0.0056  Score=34.51  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=21.0

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      +....+|+|||.|+|.++..++++.
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g   42 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHF   42 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcC
Confidence            4556789999999999999988764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.81  E-value=0.0027  Score=37.24  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=22.7

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+...+|+|||.|+|.++..+++.+|
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~   50 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLP   50 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSC
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCC
Confidence            55678999999999999999988776

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0063  Score=35.20  Aligned_cols=21  Identities=24%  Similarity=0.529  Sum_probs=17.0

Q ss_pred             CceeEeecCCccHHHHHHHHh
Q 047240           48 LKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...|+|||.|+|.++..|+++
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~   61 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSK   61 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHH
Confidence            347999999999987777654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=95.75  E-value=0.0073  Score=32.54  Aligned_cols=24  Identities=4%  Similarity=-0.195  Sum_probs=21.0

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||-|+|..+..++++
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~   41 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQ   41 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHc
Confidence            456789999999999999999875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.60  E-value=0.0031  Score=34.97  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=19.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..+++.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~   58 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY   58 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCCEEEEECCCcchhhhhHhhh
Confidence            34568999999999999999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.41  E-value=0.012  Score=33.63  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=24.5

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .++..|-   +...+|+|||.|+|..+..+++..+
T Consensus        16 ~lI~~~~---~~~~~VLDlGCG~G~~~~~~~~~~~   47 (252)
T d1ri5a_          16 CLIRLYT---KRGDSVLDLGCGKGGDLLKYERAGI   47 (252)
T ss_dssp             HHHHHHC---CTTCEEEEETCTTTTTHHHHHHHTC
T ss_pred             HHHHHhC---CCcCEEEEecccCcHHHHHHHHcCC
Confidence            4556664   4568999999999999888877643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.16  E-value=0.011  Score=33.35  Aligned_cols=27  Identities=19%  Similarity=0.270  Sum_probs=23.9

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .....+|+|||-|+|..+..|++..|+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~   80 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDE   80 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccC
Confidence            667789999999999999999988774

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.016  Score=34.47  Aligned_cols=23  Identities=35%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|||.|+|.++..++++.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G   60 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG   60 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC
Confidence            45799999999999998887754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.75  E-value=0.032  Score=32.73  Aligned_cols=46  Identities=9%  Similarity=0.218  Sum_probs=34.3

Q ss_pred             HHHHHHHhcchh----hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           21 IFYDAMIADSEL----ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        21 ~F~~~M~~~~~~----~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .|...|...++.    .+..++...+  .....+|+|+|-|+|.++..|+++
T Consensus        68 ~~~~~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~  117 (264)
T d1i9ga_          68 DYVMSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRA  117 (264)
T ss_dssp             HHHTTSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHhhccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHh
Confidence            355566655543    2345666666  677899999999999999999986

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=94.74  E-value=0.013  Score=34.18  Aligned_cols=45  Identities=18%  Similarity=0.169  Sum_probs=27.1

Q ss_pred             HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           21 IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        21 ~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .|..+-+..+...... +..+.   ....+|+|||-|+|.++.++++..
T Consensus        98 aFGTG~H~TT~l~l~~-l~~~~---~~g~~VLDiGcGsG~l~i~aa~~g  142 (254)
T d2nxca1          98 AFGTGHHETTRLALKA-LARHL---RPGDKVLDLGTGSGVLAIAAEKLG  142 (254)
T ss_dssp             ----CCSHHHHHHHHH-HHHHC---CTTCEEEEETCTTSHHHHHHHHTT
T ss_pred             ccCccccchhhHHHHH-HHhhc---CccCEEEEcccchhHHHHHHHhcC
Confidence            4544444445544433 33333   356799999999999998887643

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=94.72  E-value=0.02  Score=33.77  Aligned_cols=25  Identities=32%  Similarity=0.684  Sum_probs=20.3

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .+..+++|+|+|+|..+..+++ +|+
T Consensus       109 ~~~~~vld~g~GsG~i~~~la~-~~~  133 (271)
T d1nv8a_         109 YGIKTVADIGTGSGAIGVSVAK-FSD  133 (271)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHH-HSS
T ss_pred             ccccEEEEeeeeeehhhhhhhh-ccc
Confidence            3457899999999999999874 564

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=94.72  E-value=0.015  Score=33.89  Aligned_cols=46  Identities=22%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             HHHHHHHhcchhhH----HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           21 IFYDAMIADSELIT----IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        21 ~F~~~M~~~~~~~~----~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .|...|...++...    ..++...+  .....+|+|+|-|+|.++..++++
T Consensus        57 ~~~~~~~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~  106 (250)
T d1yb2a1          57 YFGRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYA  106 (250)
T ss_dssp             GHHHHC------------------CC--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHhhCCCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHH
Confidence            45666665554422    23444445  556789999999999999999986

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.61  E-value=0.023  Score=32.51  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=24.4

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .++...+  .....+|+|||.|+|.+++.+++.
T Consensus        61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l   91 (224)
T d1vbfa_          61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEI   91 (224)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHhh--hcccceEEEecCCCCHHHHHHHHH
Confidence            3556666  677889999999999998776653

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=94.60  E-value=0.013  Score=32.74  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHh
Q 047240           46 KGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ....+|+|||.|+|.++..++++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~   63 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER   63 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT
T ss_pred             CCCCEEEEECCCCchhccccccc
Confidence            45568999999999999998865

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.50  E-value=0.019  Score=33.45  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+..+|+|||-|+|.++..|+++
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~   77 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE   77 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc
Confidence            445679999999999999999875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=94.48  E-value=0.029  Score=32.28  Aligned_cols=35  Identities=9%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+++..+  .....+|++||-|.|.+...|+++.
T Consensus         9 i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~   43 (235)
T d1qama_           9 NIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC   43 (235)
T ss_dssp             HHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             HHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc
Confidence            3456777776  6788999999999999999999864

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.30  E-value=0.037  Score=31.41  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=24.4

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      ..++...+  .....+|+|||.|+|..++-+++
T Consensus        68 a~ml~~L~--l~~g~~VLeIGsGsGY~taila~   98 (215)
T d1jg1a_          68 AIMLEIAN--LKPGMNILEVGTGSGWNAALISE   98 (215)
T ss_dssp             HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHH
T ss_pred             HHHHHhhc--cCccceEEEecCCCChhHHHHHH
Confidence            34566666  67778999999999999887665

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.22  E-value=0.0071  Score=34.31  Aligned_cols=23  Identities=22%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             CceeEeecCCccHHHHHHHHhcC
Q 047240           48 LKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+|+|||-|+|.++..++++.+
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g~   60 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKFK   60 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSS
T ss_pred             CCeEEEEeCcCCHHHHHHHHhCC
Confidence            46899999999999999988754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=94.20  E-value=0.042  Score=32.08  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=33.3

Q ss_pred             HHHHHHhcchh----hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           22 FYDAMIADSEL----ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        22 F~~~M~~~~~~----~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      |...|...++.    .+..++...+  .....+|+|+|-|+|.++..+++..
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~  125 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAV  125 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHT
T ss_pred             HHhhccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHh
Confidence            44566544443    2335666666  7788999999999999999998864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.039  Score=33.18  Aligned_cols=51  Identities=12%  Similarity=0.227  Sum_probs=37.4

Q ss_pred             CcchHHHHHHHHHhcchh----hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           15 EPNLESIFYDAMIADSEL----ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        15 ~p~~~~~F~~~M~~~~~~----~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .|- ...|...|...+..    .+..++...+  .....+|+|+|.|+|.++..|+++
T Consensus        65 ~Pt-~~d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~  119 (324)
T d2b25a1          65 RPA-LEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKA  119 (324)
T ss_dssp             CCC-HHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCC-HHHHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHH
Confidence            454 44466677765543    2445666667  777899999999999999999886

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.71  E-value=0.031  Score=29.78  Aligned_cols=23  Identities=17%  Similarity=0.163  Sum_probs=19.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|++.|+|.++.+.+.+-
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rg   36 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRG   36 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCeEEEcCCccCHHHHHHHHhC
Confidence            45799999999999999887654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.67  E-value=0.058  Score=30.06  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=19.3

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|+|-|+|.++.+++++.
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g   68 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG   68 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT
T ss_pred             CCCEEEECcCcchHHHHHHHHcC
Confidence            34799999999999998877654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.48  E-value=0.08  Score=29.01  Aligned_cols=33  Identities=9%  Similarity=0.071  Sum_probs=25.5

Q ss_pred             HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .+++..+  -....+|+|.|-|+|.++.++.++++
T Consensus        10 ~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~   42 (223)
T d2ih2a1          10 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHG   42 (223)
T ss_dssp             HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHC
T ss_pred             HHHHhcC--CCCcCEEEECCCchHHHHHHHHHhcc
Confidence            3445444  44567999999999999999988765

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.022  Score=32.93  Aligned_cols=26  Identities=15%  Similarity=0.259  Sum_probs=22.2

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      .....++|||-|+|..+..|++++|+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~   85 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNG   85 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHC
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCC
Confidence            34568999999999999999998774

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.24  E-value=0.034  Score=31.24  Aligned_cols=22  Identities=27%  Similarity=0.265  Sum_probs=18.5

Q ss_pred             CceeEeecCCccHHHHHHHHhc
Q 047240           48 LKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        48 ~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..+|+|+|-|+|.++.++++..
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~g   70 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLG   70 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTT
T ss_pred             CCEEEEeCCCCcHHHHHHHHcC
Confidence            4799999999999988777654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=92.71  E-value=0.024  Score=32.90  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=29.1

Q ss_pred             hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+++..+  .....+|++||-|+|.+...|+++.
T Consensus        17 ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~   51 (245)
T d1yuba_          17 VLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS   51 (245)
T ss_dssp             THHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS
T ss_pred             HHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc
Confidence            3456777777  6788999999999999999998864

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.30  E-value=0.066  Score=29.03  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=19.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|++.|+|.++.+.+++.
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~g   63 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEG   63 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTT
T ss_pred             cCCCeEEEeccccchhhhhhhhcc
Confidence            456799999999999999877653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.11  Score=28.54  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=27.4

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ..++.+.|+ .+.+..+|||+|.++|..+..++++.
T Consensus        10 L~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~   44 (180)
T d1ej0a_          10 LDEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQI   44 (180)
T ss_dssp             HHHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeec
Confidence            345667776 45677899999999999999887654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.92  E-value=0.12  Score=29.37  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=19.2

Q ss_pred             hCCCceeEeecCCccHHHHHHHH
Q 047240           45 FKGLKSLVDVGGGTGTMARAIAT   67 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~   67 (71)
                      .....+|+|||.|+|..++-+++
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~  100 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYR  100 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             cCCCCeEEEecCCCCHHHHHHHH
Confidence            55678999999999998877665

>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=0.036  Score=29.99  Aligned_cols=12  Identities=50%  Similarity=1.096  Sum_probs=9.7

Q ss_pred             CCceeEeecCCc
Q 047240           47 GLKSLVDVGGGT   58 (71)
Q Consensus        47 ~~~~vvDvGGg~   58 (71)
                      +...|+|||||+
T Consensus         2 gr~Lv~DIGGGS   13 (177)
T d1u6za3           2 GRKLVIDIGGGS   13 (177)
T ss_dssp             SCEEEEEECSSC
T ss_pred             CCEEEEEeCCCh
Confidence            456899999986

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.13  Score=30.30  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=28.0

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++..+  .....+|+.||-|.|.+...|+++.+
T Consensus        10 ~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~   44 (278)
T d1zq9a1          10 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK   44 (278)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS
T ss_pred             HHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC
Confidence            456666666  56678999999999999999998753

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.19  Score=28.32  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|||-|+|..+.-+++.
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l   97 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARM   97 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHH
Confidence            455679999999999988777653

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.14  Score=29.56  Aligned_cols=34  Identities=9%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+++..+  ......|+.||-|.|.+...|+++.
T Consensus        10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~   43 (252)
T d1qyra_          10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL   43 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC
Confidence            456677666  6677899999999999999998764

>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.93  E-value=0.046  Score=29.96  Aligned_cols=12  Identities=50%  Similarity=0.886  Sum_probs=9.6

Q ss_pred             CCceeEeecCCc
Q 047240           47 GLKSLVDVGGGT   58 (71)
Q Consensus        47 ~~~~vvDvGGg~   58 (71)
                      +...|+|||||+
T Consensus         3 ~~~lviDIGGGS   14 (180)
T d1t6ca2           3 GEVCVVDQGGGS   14 (180)
T ss_dssp             SEEEEEEEETTE
T ss_pred             CCEEEEEeCCCh
Confidence            346899999985

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=89.76  E-value=0.23  Score=29.87  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..-.||.+|.|.|.++..|++.
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~  100 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRA  100 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHH
T ss_pred             ccceEEecCCcccHHHHhhhhh
Confidence            4468999999999999888764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.23  Score=27.63  Aligned_cols=24  Identities=13%  Similarity=-0.179  Sum_probs=20.5

Q ss_pred             hCCCceeEeecCCccHHHHHHHHh
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      .....+|+|+|-|.|..+..++++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~   66 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR   66 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC
Confidence            345679999999999999999875

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=0.17  Score=27.53  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|++.|+|.++.+.+++-
T Consensus        43 ~~~~vLDlfaGsG~~giealsrG   65 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRY   65 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT
T ss_pred             chhhhhhhhccccceeeeEEecC
Confidence            34689999999999999888764

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.10  E-value=0.085  Score=30.06  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhc
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      .....+|+|+|-|+|.++..|++..
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~V   95 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIV   95 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHH
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHh
Confidence            5567899999999999999998753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.056  Score=30.34  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=15.9

Q ss_pred             CCCceeEeecCCccHHHHHHH
Q 047240           46 KGLKSLVDVGGGTGTMARAIA   66 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~   66 (71)
                      ....+|+|||.|+|.++..++
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~   70 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAA   70 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTG
T ss_pred             CCCCEEEEECCCCCHhHHHHh
Confidence            345799999999997765444

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.06  E-value=0.23  Score=30.50  Aligned_cols=26  Identities=19%  Similarity=0.275  Sum_probs=20.7

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ++...++||||...|..+..+++..+
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~  235 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTK  235 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcC
Confidence            34567999999999998888776544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=86.36  E-value=0.21  Score=29.69  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+.|+.||||.|..+.++++..|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~  100 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPT  100 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTT
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCC
Confidence            3457899999999999999987654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.32  E-value=0.34  Score=27.06  Aligned_cols=26  Identities=15%  Similarity=0.061  Sum_probs=22.4

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+.++|++||.+.|..+..++++.|
T Consensus        54 ~~kpk~ILEiGt~~G~Sti~la~al~   79 (214)
T d2cl5a1          54 EYSPSLVLELGAYCGYSAVRMARLLQ   79 (214)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTCC
T ss_pred             hhCCCEEEEEccCchhHHHHHHHhCC
Confidence            34668999999999999999998765

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.51  E-value=0.21  Score=28.80  Aligned_cols=24  Identities=29%  Similarity=0.210  Sum_probs=20.6

Q ss_pred             CCCceeEeecCCccHHHHHHHHhc
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ....+|+|+|.|+|.++..++++.
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~  129 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG  129 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT
T ss_pred             CCccEEEECcceEcHHHHHHHHhC
Confidence            456899999999999999888753

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=0.16  Score=28.99  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=19.7

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHH
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARA   64 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~   64 (71)
                      +.+.+.|........+|+|||-|+|.+...
T Consensus        42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~   71 (263)
T d2g72a1          42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLL   71 (263)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGT
T ss_pred             HHHHHHcCCCCCCCcEEEEeccCCCHHHHH
Confidence            344555542234567999999999976543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=84.40  E-value=0.73  Score=26.86  Aligned_cols=32  Identities=19%  Similarity=0.113  Sum_probs=24.1

Q ss_pred             HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240           35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ..+.+.+-  +.....|||+|.|.|..+..++++
T Consensus        56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~   87 (257)
T d2p41a1          56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGL   87 (257)
T ss_dssp             HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTS
T ss_pred             HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhh
Confidence            34455554  566779999999999999887754

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.12  E-value=0.42  Score=25.95  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=19.9

Q ss_pred             CCceeEeecCCccHHHHHHHHhc
Q 047240           47 GLKSLVDVGGGTGTMARAIATGF   69 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~   69 (71)
                      ...+|+|+..|+|.++.+.+++-
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srG   63 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRG   63 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTT
T ss_pred             CCCEEEEcccccccccceeeecc
Confidence            45799999999999999888763

>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=84.08  E-value=0.18  Score=26.40  Aligned_cols=12  Identities=42%  Similarity=0.722  Sum_probs=9.6

Q ss_pred             CCceeEeecCCc
Q 047240           47 GLKSLVDVGGGT   58 (71)
Q Consensus        47 ~~~~vvDvGGg~   58 (71)
                      +...|||||||+
T Consensus         6 g~~lviDIG~gT   17 (161)
T d2fsja1           6 GYGVVIDVGSRT   17 (161)
T ss_dssp             SEEEEEEECSSC
T ss_pred             CcEEEEEcCcCe
Confidence            446899999986

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=83.92  E-value=0.26  Score=28.37  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcCC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      ....+++|||-|.|.=..-++=.+|+
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~   94 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPH   94 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTT
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCC
Confidence            35679999999988766555555553

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=83.61  E-value=0.21  Score=26.58  Aligned_cols=12  Identities=50%  Similarity=0.853  Sum_probs=9.9

Q ss_pred             CCceeEeecCCc
Q 047240           47 GLKSLVDVGGGT   58 (71)
Q Consensus        47 ~~~~vvDvGGg~   58 (71)
                      ....|+|+|||+
T Consensus         7 ~gvlV~DiGGGT   18 (196)
T d1jcea2           7 SGNMVVDIGGGT   18 (196)
T ss_dssp             SCEEEEEECSSC
T ss_pred             CceEEEEcCCCc
Confidence            456899999986

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.42  E-value=0.39  Score=27.90  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             CCCceeEeecCCccHHHHHHHHhcC
Q 047240           46 KGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        46 ~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      .....|+-||||.|..+.++++ +|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~   94 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HD   94 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SC
T ss_pred             CCCceEEEecCCchHHHHHHHH-hC
Confidence            4567889999999999999886 44

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=81.88  E-value=0.83  Score=25.48  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=19.9

Q ss_pred             hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240           45 FKGLKSLVDVGGGTGTMARAIATGFLI   71 (71)
Q Consensus        45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~   71 (71)
                      +-...+++|||-|.|.=..-++-.+|+
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p~   89 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRPE   89 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCTT
T ss_pred             hhcCCceeeeeccCCceeeehhhhccc
Confidence            344579999999999866666666664

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.69  E-value=0.28  Score=26.64  Aligned_cols=11  Identities=45%  Similarity=0.755  Sum_probs=9.0

Q ss_pred             CceeEeecCCc
Q 047240           48 LKSLVDVGGGT   58 (71)
Q Consensus        48 ~~~vvDvGGg~   58 (71)
                      ...|||+|||+
T Consensus         6 ~VlV~D~GggT   16 (193)
T d1bupa2           6 NVLIFDLGGGT   16 (193)
T ss_dssp             EEEEEEECSSC
T ss_pred             EEEEEEeCCCe
Confidence            35799999986

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=81.49  E-value=0.47  Score=27.59  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+.|+=||||.|..+.++++..|
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~   98 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPS   98 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTT
T ss_pred             CcceEEecCCCCcHHHHHHHhcCC
Confidence            457888899999999999987544

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.73  E-value=1.2  Score=24.22  Aligned_cols=35  Identities=17%  Similarity=-0.048  Sum_probs=27.3

Q ss_pred             HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240           34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ...+++.+.  -....++||+.-|.|-.+.+|+++.+
T Consensus         7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~~~   41 (182)
T d1wg8a2           7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILERGG   41 (182)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTC
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcccC
Confidence            456666665  46678999999999989999998754

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.32  E-value=0.53  Score=28.04  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             CCceeEeecCCccHHHHHHHHhcC
Q 047240           47 GLKSLVDVGGGTGTMARAIATGFL   70 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~~P   70 (71)
                      ..+.|+=||||.|..+.++++..|
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~  129 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHES  129 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTT
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCC
Confidence            456788899999999999987544

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.25  E-value=1.7  Score=25.56  Aligned_cols=22  Identities=14%  Similarity=0.129  Sum_probs=19.4

Q ss_pred             CCceeEeecCCccHHHHHHHHh
Q 047240           47 GLKSLVDVGGGTGTMARAIATG   68 (71)
Q Consensus        47 ~~~~vvDvGGg~G~~~~~l~~~   68 (71)
                      ...+||+||=|.|.+..+|+++
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~   64 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNK   64 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhc
Confidence            4568999999999999999875