Citrus Sinensis ID: 047241

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MDEEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEYLDDNLLDELLEQEEKRNKKG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHccccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEccEEEcccccEEEEEcccccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccHcccccccccccccccccccccccccEEEEEccccHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mdeeprgevkyrgvrrrpwgkfAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHlailnfpheyprashqgtsaslgssstgssstgsssssmpgnvenqseesgrgkqVIELEYLDDNLLDELLEQEEKRNKKG
Flexible Loop (DISEMBL)
mdeeprgevkyrgvrrrpwgkfaaeirdsnrhgqrvWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHEYPRASHQGTSASLGSSSTGSsstgsssssmpgnvenqseesgrgkQVIELEYLDDNLLDELLEqeekrnkkg
Low Complexity Region (SEG)
MDEEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTaeeaaraydraaySMRGHLAILNFPHEYPRASHQgtsaslgssstgssstgsssssMPGNVENQSEESGRGKQVIeleylddnlldelleqeeKRNKKG
Disordered region (IsUnstruct)
*************VRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPH************************************************IELEYLDD*****************
Disordered Region (DISOPRED)
*************VRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPH***************************************************EYLDDNLLDE************
Disordered Region (DISEMBL)
**********YRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHEYPR****************************************GKQVIELEYLDDNLLDELLE*********
Disordered Region (DISPRO)
********VKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHE******************************************RGKQVIELEYLDDNLLDELLEQ********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEYLDDNLLDELLEQEEKRNKKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9LTC5	139	Ethylene-responsive trans	yes	no	0.852	0.870	0.568	1e-31
Q9LSX0	131	Ethylene-responsive trans	no	no	0.866	0.938	0.569	5e-29
O04681	161	Pathogenesis-related gene	N/A	no	0.619	0.546	0.659	2e-26
P93822	133	Ethylene-responsive trans	no	no	0.739	0.789	0.587	3e-25
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.464	0.234	0.727	2e-23
Q40478	291	Ethylene-responsive trans	N/A	no	0.464	0.226	0.712	6e-23
Q8LDC8	218	Ethylene-responsive trans	no	no	0.457	0.298	0.753	8e-23
Q40479	233	Ethylene-responsive trans	N/A	no	0.450	0.274	0.723	2e-22
O80341	300	Ethylene-responsive trans	no	no	0.450	0.213	0.720	2e-22
Q8VYM0	243	Ethylene-responsive trans	no	no	0.457	0.267	0.723	2e-22

>sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 97/132 (73%), Gaps = 11/132 (8%)

Query: 8   EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNF 67
           + ++RGVRRRPWGKFAAEIRD +R+G R+WLGTF TAEEAARAYDRAA+++RGHLAILNF
Sbjct: 17  QARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNF 76

Query: 68  PHE-YPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEYLDDN 126
           P+E YPR           SSS+ SSS  +S+     NV  Q++     ++V E EYLDD 
Sbjct: 77  PNEYYPRMDDYSLRPPYASSSSSSSSGSTST-----NVSRQNQ-----REVFEFEYLDDK 126

Query: 127 LLDELLEQEEKR 138
           +L+ELL+ EE++
Sbjct: 127 VLEELLDSEERK 138

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX0|ERF96_ARATH Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/144 (56%), Positives = 100/144 (69%), Gaps = 21/144 (14%)

Query: 1   MDEEPRG----EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAY 56
           MD+  RG      KYRGVRRRPWGK+AAEIRDS +HG+RVWLGTF+TAEEAARAYD+AAY
Sbjct: 1   MDQGGRGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAY 60

Query: 57  SMRGHLAILNFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQ 116
           SMRG  AILNFPHEY          ++GS  + S++   SSS+        +  S   +Q
Sbjct: 61  SMRGQAAILNFPHEY----------NMGSGVSSSTAMAGSSSA-------SASASSSSRQ 103

Query: 117 VIELEYLDDNLLDELLEQEEKRNK 140
           V E EYLDD++L+ELLE+ EK NK
Sbjct: 104 VFEFEYLDDSVLEELLEEGEKPNK 127

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 65/88 (73%)

Query: 10  KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPH 69
           KYRGVRRRPWGK+AAEIRDS RHG RVWLGTF TAEEAA AYDRAA+ MRG  A+LNFP 
Sbjct: 58  KYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPS 117

Query: 70  EYPRASHQGTSASLGSSSTGSSSTGSSS 97
           E   AS      SL S+S  +++   SS
Sbjct: 118 EIVNASVSVDKLSLCSNSYTTNNNSDSS 145

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|P93822|ERF97_ARATH Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 89/131 (67%), Gaps = 26/131 (19%)

Query: 10  KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPH 69
           KYRGVRRRPWGK+AAEIRDS +HG+RVWLGTF+TAE+AARAYDRAAYSMRG  AILNFPH
Sbjct: 19  KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPH 78

Query: 70  EYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEYLDDNLLD 129
           EY                  +  TGSSS++   +  +Q        QV E EYLDD++LD
Sbjct: 79  EY------------------NMGTGSSSTAANSSSSSQ--------QVFEFEYLDDSVLD 112

Query: 130 ELLEQEEKRNK 140
           ELLE  E  NK
Sbjct: 113 ELLEYGENYNK 123

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 54/66 (81%)

Query: 5   PRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAI 64
           P  +  YRGVR+RPWGKFAAEIRD NR G RVWLGTF+TA EAA+AYDRAAY +RG  AI
Sbjct: 132 PTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAI 191

Query: 65  LNFPHE 70
           +NFP E
Sbjct: 192 VNFPLE 197

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 54/66 (81%)

Query: 5   PRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAI 64
           P  +  YRGVR+RPWGKFAAEIRD NR G RVWLGTF+TA EAA+AYDRAA+ +RG  AI
Sbjct: 139 PTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAI 198

Query: 65  LNFPHE 70
           +NFP E
Sbjct: 199 VNFPLE 204

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 6   RGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAIL 65
           + E  YRGVRRRPWGKFAAEIRDS R+G RVWLGTF +AEEAA AYD+AA+SMRG  AIL
Sbjct: 77  KSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAIL 136

Query: 66  NFPHE 70
           NF  E
Sbjct: 137 NFSAE 141

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato).

Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 54/65 (83%), Gaps = 1/65 (1%)

Query: 5   PRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAI 64
           P+G   YRGVR+RPWGKFAAEIRD  ++G RVWLGT+ TAEEAA AYD+AAY MRG  A+
Sbjct: 94  PKGR-HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKAL 152

Query: 65  LNFPH 69
           LNFPH
Sbjct: 153 LNFPH 157

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 54/68 (79%), Gaps = 4/68 (5%)

Query: 11  YRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHE 70
           YRGVR+RPWGKFAAEIRD N+ G RVWLGTF+TA EAARAYD AA+ +RG  AILNFP E
Sbjct: 156 YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215

Query: 71  Y----PRA 74
                PRA
Sbjct: 216 VGKWKPRA 223

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYM0|ERF93_ARATH Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 54/65 (83%)

Query: 11  YRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHE 70
           YRGVR+RPWGKFAAEIRDS R+G RVWLGTF+ AEEAA AYD+AA++ +G LA LNFP E
Sbjct: 86  YRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVE 145

Query: 71  YPRAS 75
             R S
Sbjct: 146 VVRES 150

May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
297744133	238	unnamed protein product [Vitis vinifera]	0.901	0.537	0.520	8e-34
224107871	148	AP2/ERF domain-containing transcription	0.823	0.790	0.631	2e-32
147806363	145	hypothetical protein VITISV_001297 [Viti	0.887	0.868	0.561	6e-31
225437868	145	PREDICTED: ethylene-responsive transcrip	0.887	0.868	0.561	7e-31
224062151	142	AP2/ERF domain-containing transcription	0.880	0.880	0.582	2e-30
224085625	143	AP2/ERF domain-containing transcription	0.852	0.846	0.576	4e-30
42565130	139	ethylene-responsive transcription factor	0.852	0.870	0.568	9e-30
356574758	134	PREDICTED: ethylene-responsive transcrip	0.816	0.865	0.514	3e-29
224066257	148	AP2/ERF domain-containing transcription	0.795	0.763	0.660	9e-29
356530280	132	PREDICTED: ethylene-responsive transcrip	0.830	0.893	0.536	4e-28

>gi|297744133|emb|CBI37103.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 93/148 (62%), Gaps = 20/148 (13%)

Query: 3   EEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHL 62
           +E +GE++YRGVRRRPWGKFAAEIRDS R G R+WLGTF TAEEAARAYD+AAY+MRGHL
Sbjct: 89  KEEKGEIRYRGVRRRPWGKFAAEIRDSTRQGARLWLGTFTTAEEAARAYDKAAYAMRGHL 148

Query: 63  AILNFPHEYPRAS-----------HQGTSASLGSSSTGSSSTGSSSSSMPGN--VENQSE 109
           AILNFP E+ + +           H+                   +S  P N  V NQ+ 
Sbjct: 149 AILNFPEEHQQVASPANTERTSDVHEKLVFEFEYLDDKLLEDLLETSENPDNDTVTNQN- 207

Query: 110 ESGRGKQVIELEYLDDNLLDELLEQEEK 137
                 QV E EYLDD +L++LLE EEK
Sbjct: 208 ------QVFEFEYLDDKVLEDLLECEEK 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107871|ref|XP_002314634.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222863674|gb|EEF00805.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 92/122 (75%), Gaps = 5/122 (4%)

Query: 6   RGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAIL 65
           R EV+YRGVRRRPWGKFAAEIRD +R G R+WLGTF+TAEEAARAYDRAA+SMRGHLAIL
Sbjct: 15  REEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFDTAEEAARAYDRAAFSMRGHLAIL 74

Query: 66  NFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEYLDD 125
           NFP++Y  +   G+S      S+ SS  G+S S   G+    S  +G+GKQVIE EYLDD
Sbjct: 75  NFPNDYL-SQAIGSSPRRPPVSSSSSDVGASESFQRGS----SSSAGQGKQVIEFEYLDD 129

Query: 126 NL 127
            +
Sbjct: 130 KI 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806363|emb|CAN69803.1| hypothetical protein VITISV_001297 [Vitis vinifera]

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 13/139 (9%)

Query: 1   MDEEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRG 60
           + E+ +  V+YRGVRRRPWGKFAAEIRDSNR G R+WLGTF TAEEAARAYD+AAY+MRG
Sbjct: 9   VKEQHKSSVRYRGVRRRPWGKFAAEIRDSNRQGVRMWLGTFTTAEEAARAYDQAAYAMRG 68

Query: 61  HLAILNFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGN--VENQSEESGRGKQVI 118
            LAILNFP +Y  ++         SSS        S    P N  V NQ+       QV 
Sbjct: 69  GLAILNFPEBYGLSNASSRPHFSSSSSPLPLIKFES----PDNDTVTNQN-------QVF 117

Query: 119 ELEYLDDNLLDELLEQEEK 137
           E EYLDD +L++LLE EEK
Sbjct: 118 EFEYLDDKVLEDLLECEEK 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437868|ref|XP_002264347.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Vitis vinifera]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 13/139 (9%)

Query: 1   MDEEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRG 60
           + E+ +  V+YRGVRRRPWGKFAAEIRDSNR G R+WLGTF TAEEAARAYD+AAY+MRG
Sbjct: 9   VKEQHKSSVRYRGVRRRPWGKFAAEIRDSNRQGVRMWLGTFTTAEEAARAYDQAAYAMRG 68

Query: 61  HLAILNFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGN--VENQSEESGRGKQVI 118
            LAILNFP +Y  ++         SSS        S    P N  V NQ+       QV 
Sbjct: 69  GLAILNFPEDYGLSNASSRPHFSSSSSPLPLIKFES----PDNDTVTNQN-------QVF 117

Query: 119 ELEYLDDNLLDELLEQEEK 137
           E EYLDD +L++LLE EEK
Sbjct: 118 EFEYLDDKVLEDLLECEEK 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062151|ref|XP_002300780.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842506|gb|EEE80053.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 98/134 (73%), Gaps = 9/134 (6%)

Query: 3   EEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHL 62
           +E R E  YRG+RRRPWGKFAAEIRD  R+G R WLGTF+TAEEAARAYDRAA++ RGHL
Sbjct: 13  QEKRRENAYRGIRRRPWGKFAAEIRDPTRNGTRRWLGTFDTAEEAARAYDRAAFAFRGHL 72

Query: 63  AILNFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEY 122
           AILNFP+EY    HQ T++++  +S+ S ST +  S   GN       S  G++VIE EY
Sbjct: 73  AILNFPNEY---QHQETNSTMSFASSSSFSTENPLSY--GN----EVSSTNGQEVIEFEY 123

Query: 123 LDDNLLDELLEQEE 136
           LD+ LL+ELLE ++
Sbjct: 124 LDNKLLEELLETDD 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085625|ref|XP_002307640.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222857089|gb|EEE94636.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/130 (57%), Positives = 97/130 (74%), Gaps = 9/130 (6%)

Query: 3   EEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHL 62
           E+ RGE  YRG+RRRPWGKFAAEIRD  ++G R WLGT++TAEEAARAYDRAA++ RGHL
Sbjct: 14  EKGRGENAYRGIRRRPWGKFAAEIRDPTKNGARRWLGTYDTAEEAARAYDRAAFAFRGHL 73

Query: 63  AILNFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEY 122
           AILNFP+EY    HQ  S+++  +S+ S ST +     P N  ++   +G G++VIE EY
Sbjct: 74  AILNFPNEY---QHQDPSSAMSFASSSSFSTAN-----PVNYGHEVSSTG-GQEVIEFEY 124

Query: 123 LDDNLLDELL 132
           LD+ LL+ELL
Sbjct: 125 LDNKLLEELL 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565130|ref|NP_188964.2| ethylene-responsive transcription factor ERF098 [Arabidopsis thaliana] gi|75274087|sp|Q9LTC5.1|ERF98_ARATH RecName: Full=Ethylene-responsive transcription factor ERF098 gi|7939533|dbj|BAA95736.1| Nicotiana EREBP-3-like protein [Arabidopsis thaliana] gi|34221729|emb|CAE45639.1| putative ethylene responsive element binding protein [Arabidopsis thaliana] gi|332643216|gb|AEE76737.1| ethylene-responsive transcription factor ERF098 [Arabidopsis thaliana]

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 97/132 (73%), Gaps = 11/132 (8%)

Query: 8   EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNF 67
           + ++RGVRRRPWGKFAAEIRD +R+G R+WLGTF TAEEAARAYDRAA+++RGHLAILNF
Sbjct: 17  QARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNF 76

Query: 68  PHE-YPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEYLDDN 126
           P+E YPR           SSS+ SSS  +S+     NV  Q++     ++V E EYLDD 
Sbjct: 77  PNEYYPRMDDYSLRPPYASSSSSSSSGSTST-----NVSRQNQ-----REVFEFEYLDDK 126

Query: 127 LLDELLEQEEKR 138
           +L+ELL+ EE++
Sbjct: 127 VLEELLDSEERK 138

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574758|ref|XP_003555512.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 90/134 (67%), Gaps = 18/134 (13%)

Query: 8   EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNF 67
           EV+YRGVRRRPWGK+AAEIRD ++ G R+WLGTF+TAEEAARAYDRAA+++RGHLAILNF
Sbjct: 15  EVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNF 74

Query: 68  PHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEYLDDNL 127
           P EY  +  +G+       +T SSS+G+                   + V E+  LDD +
Sbjct: 75  PSEY-YSQIRGSPPYPPHLATPSSSSGAQQ-----------------RPVFEIPCLDDKV 116

Query: 128 LDELLEQEEKRNKK 141
           L++LL Q E+  KK
Sbjct: 117 LEDLLGQSEEHKKK 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066257|ref|XP_002302050.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222843776|gb|EEE81323.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/115 (66%), Positives = 86/115 (74%), Gaps = 2/115 (1%)

Query: 8   EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNF 67
           E++YRGVRRRPWGKFAAEIRDS RHG R+WLGTFNTAEEAARAYD AAY+MRG LAILNF
Sbjct: 15  EIRYRGVRRRPWGKFAAEIRDSTRHGARLWLGTFNTAEEAARAYDGAAYAMRGPLAILNF 74

Query: 68  PHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIELEY 122
           P EYP+        S   SS+  SS+ +SSSSM  N E      GRGK+V E+EY
Sbjct: 75  PGEYPKTKVDSDITSSSISSSPLSSSSASSSSMSQNAERSG--IGRGKEVFEIEY 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530280|ref|XP_003533710.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 88/138 (63%), Gaps = 20/138 (14%)

Query: 2   DEEPRGE-VKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRG 60
           D+E RGE VKYRGVRRRPWGKF AEIRD  +   R WLGTF+TAEEAARAYDRAA  +RG
Sbjct: 10  DKEKRGEEVKYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIELRG 69

Query: 61  HLAILNFPHEYPRASHQGTSASLGSSSTGSSSTGSSSSSMPGNVENQSEESGRGKQVIEL 120
            LAILNFP E          + L   S+  +ST + SS  P +           K+VIE 
Sbjct: 70  VLAILNFPDE--------CYSQLPFVSSNPTSTANGSSFAPTH-----------KEVIEF 110

Query: 121 EYLDDNLLDELLEQEEKR 138
           E LD+ +L++LLE E KR
Sbjct: 111 ECLDNKVLEDLLESEVKR 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.492	0.503	0.605	5.7e-20
TAIR|locus:2176511	131	AT5G43410 [Arabidopsis thalian	0.528	0.572	0.594	5.7e-20
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.436	0.466	0.677	1.5e-19
TAIR|locus:2086213	139	TDR1 "Transcriptional Regulato	0.464	0.474	0.597	3.6e-18
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.429	0.25	0.590	1.3e-15
TAIR|locus:2086223	218	ERF1 "ethylene response factor	0.457	0.298	0.6	1.3e-15
TAIR|locus:2042496	243	ERF15 "ethylene-responsive ele	0.521	0.304	0.532	4.2e-15
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.422	0.2	0.6	5.2e-15
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.422	0.271	0.6	6.9e-15
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.457	0.287	0.545	1.1e-14

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 46/76 (60%), Positives = 50/76 (65%)

Query:     8 EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAILNF 67
             E+KYRGVR+RPWGK+AAEIRDS RHG RVWLGTFNT              MRG  AILNF
Sbjct:    11 EMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNF 70

Query:    68 PHEY------PRASHQ 77
             PHEY      P  SH+
Sbjct:    71 PHEYQMMKDGPNGSHE 86

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2176511 AT5G43410 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 47/79 (59%), Positives = 52/79 (65%)

Query:     1 MDEEPRG----EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXX 56
             MD+  RG      KYRGVRRRPWGK+AAEIRDS +HG+RVWLGTF+T             
Sbjct:     1 MDQGGRGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAY 60

Query:    57 SMRGHLAILNFPHEYPRAS 75
             SMRG  AILNFPHEY   S
Sbjct:    61 SMRGQAAILNFPHEYNMGS 79

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 42/62 (67%), Positives = 46/62 (74%)

Query:    10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAILNFPH 69
             KYRGVRRRPWGK+AAEIRDS +HG+RVWLGTF+T             SMRG  AILNFPH
Sbjct:    19 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPH 78

Query:    70 EY 71
             EY
Sbjct:    79 EY 80

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2086213 TDR1 "Transcriptional Regulator of Defense Response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 40/67 (59%), Positives = 49/67 (73%)

Query:     8 EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAILNF 67
             + ++RGVRRRPWGKFAAEIRD +R+G R+WLGTF T             ++RGHLAILNF
Sbjct:    17 QARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNF 76

Query:    68 PHEY-PR 73
             P+EY PR
Sbjct:    77 PNEYYPR 83

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 36/61 (59%), Positives = 42/61 (68%)

Query:     8 EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAILNF 67
             E  YRGVR+RPWGKFAAEIRDS R G RVWLGTF+T             +++G LA+LNF
Sbjct:    79 EKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNF 138

Query:    68 P 68
             P
Sbjct:   139 P 139

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2086223 ERF1 "ethylene response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/65 (60%), Positives = 42/65 (64%)

Query:     6 RGEVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAIL 65
             + E  YRGVRRRPWGKFAAEIRDS R+G RVWLGTF +             SMRG  AIL
Sbjct:    77 KSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAIL 136

Query:    66 NFPHE 70
             NF  E
Sbjct:   137 NFSAE 141

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0006952 "defense response" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;TAS

TAIR|locus:2042496 ERF15 "ethylene-responsive element binding factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/77 (53%), Positives = 47/77 (61%)

Query:     2 DEEPRG---EVKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSM 58
             +EE  G   E  YRGVR+RPWGKFAAEIRDS R+G RVWLGTF+              + 
Sbjct:    74 EEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFAT 133

Query:    59 RGHLAILNFPHEYPRAS 75
             +G LA LNFP E  R S
Sbjct:   134 KGSLATLNFPVEVVRES 150

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 36/60 (60%), Positives = 40/60 (66%)

Query:    11 YRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAILNFPHE 70
             YRGVR+RPWGKFAAEIRD N+ G RVWLGTF+T              +RG  AILNFP E
Sbjct:   156 YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 36/60 (60%), Positives = 40/60 (66%)

Query:    11 YRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAILNFPHE 70
             YRGVRRRPWGK+AAEIRD N+ G RVWLGTF+T              +RG  AILNFP E
Sbjct:    72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 36/66 (54%), Positives = 43/66 (65%)

Query:     5 PRGE-VKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLA 63
             PR + ++YRGVRRRPWGKFAAEIRD  ++G RVWLGT+ T              +RG  A
Sbjct:    85 PRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKA 144

Query:    64 ILNFPH 69
              LNFPH
Sbjct:   145 KLNFPH 150

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LTC5	ERF98_ARATH	No assigned EC number	0.5681	0.8521	0.8705	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007518001 SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (127 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-30
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-28
pfam00847	53	pfam00847, AP2, AP2 domain	2e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  104 bits (261), Expect = 1e-30
 Identities = 44/60 (73%), Positives = 52/60 (86%), Gaps = 1/60 (1%)

Query: 10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPH 69
          KYRGVR+RPWGK+ AEIRD ++ G+RVWLGTF+TAEEAARAYDRAA+  RG  A LNFP+
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 98.1 bits (245), Expect = 3e-28
 Identities = 43/60 (71%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPH 69
          KYRGVR+RPWGK+ AEIRD    G+R+WLGTF+TAEEAARAYDRAA  +RG  A+LNFP 
Sbjct: 2  KYRGVRQRPWGKWVAEIRD-PSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 63.1 bits (154), Expect = 2e-14
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 10 KYRGVRRRP-WGKFAAEIRD-SNRHGQRVWLGTFNTAEEAARAYDRAAYSMRG 60
           Y+GVR    WG++ AEIRD   +  +R  LGTF T EEAARA   A   +RG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.85
PHA00280	121	putative NHN endonuclease	99.55
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.31
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	86.09

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=5.4e-22  Score=130.26  Aligned_cols=61  Identities=70%  Similarity=1.250  Sum_probs=56.9

Q ss_pred             cceeEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 047241            9 VKYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHE   70 (142)
Q Consensus         9 S~yrGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~~G~~a~~NFp~~   70 (142)
                      |+|+||+++++|||+|+|+++. .|+++|||+|+|+||||.|||.+++.++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899999888999999999854 479999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.85  E-value=3e-21  Score=128.24  Aligned_cols=62  Identities=71%  Similarity=1.231  Sum_probs=57.6

Q ss_pred             ceeEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 047241           10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHEYP   72 (142)
Q Consensus        10 ~yrGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~~G~~a~~NFp~~~~   72 (142)
                      +|+||+++++|+|+|+|+++. +|+.+|||+|+|+||||.|||.++++++|.++.+|||...+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            599999989999999999854 57999999999999999999999999999999999998755

>PHA00280 putative NHN endonuclease

Probab=99.55  E-value=1.4e-14  Score=108.14  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             CCCCCCcceeEeEE-CCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 047241            3 EEPRGEVKYRGVRR-RPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAIL   65 (142)
Q Consensus         3 ~~~~~~S~yrGV~~-r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~~G~~a~~   65 (142)
                      +.+.|+|+|+||++ ...|||+|+|.+   +||+++||.|+++|+|+.||+ ++.++||+||..
T Consensus        61 ~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         61 TPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             CCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            35688999999985 457999999976   699999999999999999997 778899999853

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.31  E-value=6.1e-12  Score=80.51  Aligned_cols=53  Identities=34%  Similarity=0.518  Sum_probs=45.6

Q ss_pred             cceeEeEE-CCCCcEEEEEecCCCCC--eEEeecCCCCHHHHHHHHHHHHHhhcCC
Q 047241            9 VKYRGVRR-RPWGKFAAEIRDSNRHG--QRVWLGTFNTAEEAARAYDRAAYSMRGH   61 (142)
Q Consensus         9 S~yrGV~~-r~~Gkw~A~I~~~~~~g--k~i~LGtF~t~EEAA~AYD~aa~~~~G~   61 (142)
                      |+|+||++ +..++|+|+|++...+|  ++++||.|++++||+.|++.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            78999985 45799999999854343  9999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=86.09  E-value=3.2  Score=25.35  Aligned_cols=39  Identities=15%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             cEEEEEe--cC-CCCCeEEeecCCCCHHHHHHHHHHHHHhhc
Q 047241           21 KFAAEIR--DS-NRHGQRVWLGTFNTAEEAARAYDRAAYSMR   59 (142)
Q Consensus        21 kw~A~I~--~~-~~~gk~i~LGtF~t~EEAA~AYD~aa~~~~   59 (142)
                      +|...|.  ++ +.+.++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  32 333477888999999999999988776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		8e-14
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-13

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 38/58 (65%)
Query: 11 YRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAILNFP 68
          YRGVR+RPWGKFAAEIRD  ++G RVWLGTF T              MRG  A+LNFP
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 38/58 (65%)
Query: 11 YRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTXXXXXXXXXXXXXSMRGHLAILNFP 68
          YRGVR+RPWGKFAAEIRD  ++G RVWLGTF T              MRG  A+LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-40

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  128 bits (323), Expect = 3e-40
 Identities = 44/61 (72%), Positives = 50/61 (81%)

Query: 10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPH 69
           YRGVR+RPWGKFAAEIRD  ++G RVWLGTF TAE+AA AYDRAA+ MRG  A+LNFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 70 E 70
           
Sbjct: 62 R 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.94
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	89.45
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	83.96
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	81.44

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.94  E-value=4e-27  Score=156.48  Aligned_cols=61  Identities=72%  Similarity=1.258  Sum_probs=58.3

Q ss_pred             ceeEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 047241           10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHE   70 (142)
Q Consensus        10 ~yrGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~~G~~a~~NFp~~   70 (142)
                      +|+||++++||||+|+|+++..+|+++|||+|+|+||||+|||.|++.++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999998899999999999877789999999999999999999999999999999999976

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=89.45  E-value=0.26  Score=33.43  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=19.0

Q ss_pred             CCCcceeEeEEC-CCCcEEEEEecC
Q 047241            6 RGEVKYRGVRRR-PWGKFAAEIRDS   29 (142)
Q Consensus         6 ~~~S~yrGV~~r-~~Gkw~A~I~~~   29 (142)
                      ...|+|.||++. ..+.|.|...+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            357999999854 469999999874

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=83.96  E-value=0.18  Score=37.69  Aligned_cols=37  Identities=8%  Similarity=-0.080  Sum_probs=26.1

Q ss_pred             eEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHH
Q 047241           12 RGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYD   52 (142)
Q Consensus        12 rGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD   52 (142)
                      +||.....++|.+.|...    +.++||.|+|.+|||++|.
T Consensus       110 ~g~~~~~~~k~~~vi~~~----~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          110 KAQQIAKIKNQKPIIVIS----PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHTCCCEEEEC----TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeccCCCCceEEEEc----CCceEEeeCCHHHHHHHHC
Confidence            455332235688888652    4567999999999999963

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=81.44  E-value=2.3  Score=33.11  Aligned_cols=42  Identities=19%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             eEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhh
Q 047241           12 RGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSM   58 (142)
Q Consensus        12 rGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~   58 (142)
                      .||+.++.|.|..+..   .+|+++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~---~~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDP---RTGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECT---TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEee---cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            3687778899998763   3688999996  8888877665544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-32

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  107 bits (269), Expect = 2e-32
 Identities = 44/61 (72%), Positives = 50/61 (81%)

Query: 10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPH 69
           YRGVR+RPWGKFAAEIRD  ++G RVWLGTF TAE+AA AYDRAA+ MRG  A+LNFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 70 E 70
           
Sbjct: 62 R 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.94

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1.5e-27  Score=157.29  Aligned_cols=61  Identities=72%  Similarity=1.258  Sum_probs=58.3

Q ss_pred             ceeEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 047241           10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHE   70 (142)
Q Consensus        10 ~yrGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~~G~~a~~NFp~~   70 (142)
                      .||||+++++|||.|+|+++..+++++|||+|+|+||||+|||++++.++|..+.+|||.+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            4999998899999999999888889999999999999999999999999999999999976