Citrus Sinensis ID: 047242

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MFESQTSVELPILDISQPLQPSAGFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCKPFVC
cccccccccccEEEccccccccccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccHHHHHHHHHccccccccEEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccc
cccccccccccEEEccccccHcccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccHHHHHHHHcHHHHHHccccHHHHHHHHcccccHEEEEcccccccccccEccccccccccEEEEEEccccccEEEEEEEccHHHHEHccccEEEEEEEEEEccccccEEEEEEcccccccEEcccHHHcccccccccccccc
mfesqtsvelpildisqplqpsagfflisnhgisrDLYRRLYMISRKLFDLAFDAklelgpssstntytphfiaspffeslrvsgpnffasanfENKYYESEfknchgylriincsppealeneveglgmhtdmscITIVYQdeigglqtTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWcfeeekvilpsdevvgeesmrlckpfvc
mfesqtsvelpildiSQPLQPSAGFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVIlpsdevvgeesmrlckpfvc
MFESQTSVELPILDISQPLQPSAGFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCKPFVC
***********ILDISQPLQPSAGFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILPSDEVVG************
******S***PILDISQPLQPSAGFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCKPFVC
********ELPILDISQPLQPSAGFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILPSDEVVGEESM********
*****TSVELPILDISQPLQPSAGFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCK*FVC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFESQTSVELPILDISQPLQPSAGFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCKPFVC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query217 2.2.26 [Sep-21-2011]
O49561338 Gibberellin 2-beta-dioxyg no no 0.870 0.559 0.282 4e-13
Q9C6I4336 Gibberellin 2-beta-dioxyg no no 0.838 0.541 0.279 7e-13
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.880 0.529 0.272 8e-10
O04706365 Gibberellin 20 oxidase 1- N/A no 0.548 0.326 0.311 3e-09
O04707365 Gibberellin 20 oxidase 1- N/A no 0.516 0.306 0.320 4e-09
O04705361 Gibberellin 20 oxidase 1- N/A no 0.516 0.310 0.320 4e-09
Q0JH50389 Gibberellin 20 oxidase 2 no no 0.497 0.277 0.314 7e-09
P0C5H5389 Gibberellin 20 oxidase 2 N/A no 0.497 0.277 0.314 7e-09
Q39110377 Gibberellin 20 oxidase 1 no no 0.857 0.493 0.234 1e-08
Q39112380 Gibberellin 20 oxidase 3 no no 0.502 0.286 0.308 4e-08
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function desciption
 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 105/258 (40%), Gaps = 69/258 (26%)

Query: 8   VELPILDISQPLQPSA-----------------GFFLISNHGISRDLYRRLYMISRKLFD 50
           VELP++D+S+ +  +                  GFF + NHGIS D+  ++     ++F 
Sbjct: 40  VELPVIDVSRLIDGAEEEREKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFR 99

Query: 51  LAFDAK----------LELGPSSSTNTYTPHFIASPFFESLRVSGPNFFA--SANFENKY 98
             FD K             G  S+T+     +  +       +S    F   S+  E   
Sbjct: 100 EPFDKKSKSEKFSAGSYRWGTPSATSIRQLSWSEAFHVPMTDISDNKDFTTLSSTMEKFA 159

Query: 99  YESE--------------------FK-NC---HGYLRIINCSPPEALENEVEGLGMHTDM 134
            ESE                    FK NC     YLR+ N  PP    +EV GL  HTD 
Sbjct: 160 SESEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRM-NRYPPCPKPSEVYGLMPHTDS 218

Query: 135 SCITIVYQDEIGGLQTTRR---------------NIGDMLQAWGNERFRSLEHWVVLRQS 179
             +TI+YQD++GGLQ  +                NIGD+ QAW N  ++S+EH V+    
Sbjct: 219 DFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPK 278

Query: 180 VNCLSLVFFWCFEEEKVI 197
           V   S  +F C   + VI
Sbjct: 279 VERFSTAYFMCPSYDAVI 296
Catalyzes the 2-beta-hydroxylation of gibberellins (GA) precursors, rendering them unable to be converted to active GAs. Hydroxylates the C20-GA GA12 and GA53, but is not active on C19-GAs, like GA1, GA4, GA9 and GA20.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|Q9C6I4|G2OX7_ARATH Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1 Back     alignment and function description
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|Q0JH50|GAOX2_ORYSJ Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
224067894316 2-oxoglutarate-dependent dioxygenase [Po 0.972 0.667 0.555 6e-78
255541592317 gibberellin 20-oxidase, putative [Ricinu 0.981 0.671 0.540 8e-75
225454236 328 PREDICTED: gibberellin 20 oxidase 1-B [V 0.981 0.649 0.526 3e-73
356506224 319 PREDICTED: gibberellin 3-beta-dioxygenas 1.0 0.680 0.512 4e-70
224071491 360 2-oxoglutarate-dependent dioxygenase [Po 1.0 0.602 0.498 7e-68
225426432 339 PREDICTED: gibberellin 3-beta-dioxygenas 1.0 0.640 0.482 3e-67
297742515 321 unnamed protein product [Vitis vinifera] 1.0 0.676 0.482 4e-67
358249366 319 uncharacterized protein LOC100812108 [Gl 1.0 0.680 0.484 1e-65
359490626 324 PREDICTED: gibberellin 20 oxidase 1-B-li 0.995 0.666 0.506 5e-65
224074939 320 2-oxoglutarate-dependent dioxygenase [Po 1.0 0.678 0.486 3e-64
>gi|224067894|ref|XP_002302586.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222844312|gb|EEE81859.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 156/281 (55%), Positives = 181/281 (64%), Gaps = 70/281 (24%)

Query: 7   SVELPILDISQPLQPSA-----------GFFLISNHGISRDLYRRLYMISRKLFDLAFDA 55
           S ELPILDISQPLQPSA           GFF ISNHGIS++LY +LY +S++LF L  + 
Sbjct: 6   SAELPILDISQPLQPSALASLAEACQEWGFFRISNHGISKELYNKLYSLSQQLFGLPAET 65

Query: 56  KLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASA----------------------- 92
           KLELGPSSS NTYTPHFIASPFFE LRV GPNFFASA                       
Sbjct: 66  KLELGPSSSINTYTPHFIASPFFECLRVFGPNFFASAQSSADTLFGQQSFEFRAALQEYG 125

Query: 93  --------------------NFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHT 132
                                F+NKYYESEFKNCHGYLRIIN +PP+ L +EVEGLGMHT
Sbjct: 126 TKMTELSKRIVEILSMSLGEGFDNKYYESEFKNCHGYLRIINYNPPKGLVDEVEGLGMHT 185

Query: 133 DMSCITIVYQDEIGGLQTTRR----------------NIGDMLQAWGNERFRSLEHWVVL 176
           DMSC+TIVYQDE+GGLQ   R                NIGD+LQAW N++ RS EH +VL
Sbjct: 186 DMSCVTIVYQDEVGGLQVKSREGKWMDISPGEETLVVNIGDLLQAWSNDKLRSSEHRIVL 245

Query: 177 RQSVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCKPFVC 217
           ++ VN LSL FFWCFE+EKVI+  +EVVGE + R+ +PFVC
Sbjct: 246 KKPVNRLSLAFFWCFEDEKVIMAPNEVVGEGNARIYEPFVC 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255541592|ref|XP_002511860.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223549040|gb|EEF50529.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225454236|ref|XP_002274751.1| PREDICTED: gibberellin 20 oxidase 1-B [Vitis vinifera] gi|147834194|emb|CAN75307.1| hypothetical protein VITISV_040404 [Vitis vinifera] gi|297745296|emb|CBI40376.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356506224|ref|XP_003521887.1| PREDICTED: gibberellin 3-beta-dioxygenase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|224071491|ref|XP_002303486.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222840918|gb|EEE78465.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426432|ref|XP_002270279.1| PREDICTED: gibberellin 3-beta-dioxygenase 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742515|emb|CBI34664.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|358249366|ref|NP_001240043.1| uncharacterized protein LOC100812108 [Glycine max] gi|255645239|gb|ACU23117.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359490626|ref|XP_002271841.2| PREDICTED: gibberellin 20 oxidase 1-B-like [Vitis vinifera] gi|302143842|emb|CBI22703.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224074939|ref|XP_002304499.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222841931|gb|EEE79478.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
TAIR|locus:2121671324 AT4G23340 [Arabidopsis thalian 0.456 0.305 0.556 1.2e-45
TAIR|locus:2037159385 GA20OX5 "gibberellin 20-oxidas 0.529 0.298 0.348 2.2e-16
TAIR|locus:2127403338 GA2OX8 "gibberellin 2-oxidase 0.405 0.260 0.384 5.4e-16
TAIR|locus:2036386336 GA2OX7 "gibberellin 2-oxidase 0.447 0.288 0.345 9.1e-16
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.299 0.186 0.333 2.2e-10
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.465 0.290 0.310 2.3e-10
TAIR|locus:2011506317 AT1G52820 [Arabidopsis thalian 0.548 0.375 0.323 2.4e-10
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.548 0.315 0.281 1.1e-09
TAIR|locus:2182875380 GA20OX3 "gibberellin 20-oxidas 0.516 0.294 0.3 2.5e-09
TAIR|locus:2165341378 GA20OX2 "gibberellin 20 oxidas 0.552 0.317 0.289 3.2e-09
TAIR|locus:2121671 AT4G23340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 285 (105.4 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 64/115 (55%), Positives = 72/115 (62%)

Query:   119 EALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRR----------------NIGDMLQAW 162
             E  E  VEGLGMHTDMSCITIVYQD +GGLQ   +                NIGD++QAW
Sbjct:   174 EKQEELVEGLGMHTDMSCITIVYQDSVGGLQMRSKEGKWIDINPCNDFLVVNIGDLMQAW 233

Query:   163 GNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCKPFVC 217
              N R RS EH VVLR+ VN +SL FF CFE+EKVIL   E+VGE   R  K F C
Sbjct:   234 SNGRLRSSEHRVVLRKLVNRVSLAFFLCFEDEKVILAPQEIVGEGKQRSYKSFKC 288
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA;ISS
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2037159 GA20OX5 "gibberellin 20-oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127403 GA2OX8 "gibberellin 2-oxidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036386 GA2OX7 "gibberellin 2-oxidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011506 AT1G52820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182875 GA20OX3 "gibberellin 20-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165341 GA20OX2 "gibberellin 20 oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
2OGox21
2-oxoglutarate-dependent dioxygenase (316 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-19
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-13
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-12
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 7e-12
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-11
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-10
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-10
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-10
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-09
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-08
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-08
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 6e-08
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-07
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 5e-07
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-06
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-06
PLN02216357 PLN02216, PLN02216, protein SRG1 9e-06
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-05
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-05
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-04
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-04
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-04
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-04
PLN02997325 PLN02997, PLN02997, flavonol synthase 9e-04
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 0.001
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information 
 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 64/279 (22%), Positives = 98/279 (35%), Gaps = 91/279 (32%)

Query: 9   ELPILDIS--------------QPLQPSA---GFFLISNHGISRDLYRRLYMISRKLFDL 51
           +LPI+D+S              Q L+ +    GFF + NHGI   L    + ++R+ F L
Sbjct: 5   DLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFAL 64

Query: 52  AFDAKL----ELGPSSSTNTYTPHFIA----------------------SPFFESLRVSG 85
             + KL     LG       YTPH                         +       + G
Sbjct: 65  PVEEKLKILMVLGRQHRG--YTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHG 122

Query: 86  PN----------------------------FFASA-NFENKYYESEFKNCHGYLRIINCS 116
           PN                              A   +    +++    + +  LR++   
Sbjct: 123 PNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLPEDFFDKRTSDPNSVLRLLRYP 182

Query: 117 PPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRR----------------NIGDMLQ 160
              A E   +G+G HTD   +T+++QD++GGL+                    NIGDML+
Sbjct: 183 SRPAREG-ADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPPIPGTLVVNIGDMLE 241

Query: 161 AWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVILP 199
            W N R RS  H V     V+  S+ FF     +  I P
Sbjct: 242 RWTNGRLRSTVHRVRNPPGVDRYSIPFFLEPNFDAEIAP 280

Length = 322
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 217
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02997325 flavonol synthase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02904357 oxidoreductase 100.0
PLN02485329 oxidoreductase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.86
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.75
PLN03176120 flavanone-3-hydroxylase; Provisional 99.59
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 86.03
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-59  Score=405.57  Aligned_cols=209  Identities=25%  Similarity=0.412  Sum_probs=180.7

Q ss_pred             CCCcEEeCCCC-----CCCCc---cEEEEEccCCCHHHHHHHHHHHHHHhcCCHHHHhhcCCCC-CCCCcccCCC-----
Q 047242            8 VELPILDISQP-----LQPSA---GFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSS-STNTYTPHFI-----   73 (217)
Q Consensus         8 ~~iPvIDl~~~-----~~~a~---Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~Gy~~~~~-----   73 (217)
                      .+||||||+..     +..||   |||||+||||+.++++++++.+++||+||.|+|+++.... ..+||.....     
T Consensus        55 ~~iPvIDl~~~~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~  134 (358)
T PLN02254         55 ESIPVIDLSDPNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFN  134 (358)
T ss_pred             CCCCeEeCCCHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccccccccccccC
Confidence            57999999864     35678   9999999999999999999999999999999999986543 5678865432     


Q ss_pred             CCccccccccc------CCCccccC------------------------------CCCchhhHHhh-----hCCccceee
Q 047242           74 ASPFFESLRVS------GPNFFASA------------------------------NFENKYYESEF-----KNCHGYLRI  112 (217)
Q Consensus        74 ~~~~~e~~~~~------~p~~~~~~------------------------------gl~~~~~~~~~-----~~~~~~lrl  112 (217)
                      ..+|+|.+.+.      .+++||+.                              |+++++|.+.+     ..+.+.||+
T Consensus       135 ~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl  214 (358)
T PLN02254        135 KKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQL  214 (358)
T ss_pred             CCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEE
Confidence            23688877642      35788853                              88888887655     345578999


Q ss_pred             eecCCCCCCcccccccccccCCCeeEEEEeCCCCceeEEE----------------echhhHHHHHhCCccccccccccc
Q 047242          113 INCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTR----------------RNIGDMLQAWGNERFRSLEHWVVL  176 (217)
Q Consensus       113 l~Y~p~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqv~~----------------VniGd~l~~~snG~~ks~~HRV~~  176 (217)
                      + |||+|+.++..+|+++|||+|+||||+||+++||||+.                ||+||+||+||||+|||+.|||+.
T Consensus       215 ~-~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~  293 (358)
T PLN02254        215 N-SYPVCPDPDRAMGLAPHTDSSLLTILYQSNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVV  293 (358)
T ss_pred             e-cCCCCCCcccccCcCCccCCCcEEEEecCCCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeec
Confidence            5 55778877788999999999999999999999999976                999999999999999999999999


Q ss_pred             CCCCceEEEEEeecCCCCcEEecCccccCCCCCCCCCCccC
Q 047242          177 RQSVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCKPFVC  217 (217)
Q Consensus       177 ~~~~~R~Si~~F~~p~~d~~i~p~~~~~~~~~~~~y~~~~~  217 (217)
                      ++..+||||+||++|+.|++|.|+++|+++++|++|+++++
T Consensus       294 ~~~~~R~Sia~F~~P~~d~~i~pl~~lv~~~~p~~Y~~~t~  334 (358)
T PLN02254        294 NKTRHRISVAYFYGPPSDVQISPLPKLVDPNHPPLYRSVTW  334 (358)
T ss_pred             CCCCCEEEEEEEecCCCCcEEeCcHHhcCCCCCcccCCcCH
Confidence            88889999999999999999999999999999999999975

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
1w9y_A319 The Structure Of Acc Oxidase Length = 319 3e-06
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 52/193 (26%)
Query: 33  ISRDLYRRLYMISRKLFDL-AFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFAS 91
           + RD  +RL  ++ +L DL   +  LE G           ++ + F+ S    GPNF   
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKG-----------YLKNAFYGS---KGPNFGTK 158
Query: 92  ANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDE-IGGLQT 150
                                ++  PP    + ++GL  HTD   I +++QD+ + GLQ 
Sbjct: 159 ---------------------VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL 197
Query: 151 TRR---------------NIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEK 195
            +                N+GD L+   N +++S+ H V+ ++     SL  F+    + 
Sbjct: 198 LKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDA 257
Query: 196 VILPSDEVVGEES 208
           VI P+  +V +E+
Sbjct: 258 VIYPAPALVEKEA 270

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-27
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 7e-26
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 5e-25
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 4e-18
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 6e-04
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-17
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-05
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 7e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
 Score =  104 bits (262), Expect = 2e-27
 Identities = 35/285 (12%), Positives = 70/285 (24%), Gaps = 85/285 (29%)

Query: 7   SVELPILDISQPLQPSA-----------GFFLISNHGISRDLYRRLYMISRKLFDLAFDA 55
              +P   +++  Q              G F +++ G++    +    +    F+   +A
Sbjct: 2   DTTVPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEA 61

Query: 56  KLELGPSSSTNT---YTP--------------HFIASPFFESLRVSGPNFFASANFE--- 95
           +     S        +T               +   S  +        N F S +FE   
Sbjct: 62  EKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT--ADNLFPSGDFERIW 119

Query: 96  NKYYE-------------------------SEFKNCHGYLRIIN---CSPPEALENEVEG 127
            +Y++                           F +C   LR           + E +   
Sbjct: 120 TQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLR 179

Query: 128 LGMHTDMSCITIVYQDEIGG----LQTTRR---------------NIGDMLQAWGNERFR 168
           +  H D+S +T++ Q         LQ                     G +       + +
Sbjct: 180 MAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVK 239

Query: 169 SLEHWVVLRQSVNC-----LSLVFFWCFEEEKVILPSDEVVGEES 208
           +  H V   +          S VFF     +              
Sbjct: 240 APRHHVAAPRRDQIAGSSRTSSVFFLRPNADFTFSVPLARECGFD 284
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=1.8e-59  Score=402.06  Aligned_cols=210  Identities=21%  Similarity=0.310  Sum_probs=179.6

Q ss_pred             CCCCcEEeCCCCC----------CCCc---cEEEEEccCCCHHHHHHHHHHHHHHhcCCHHHHhhcCCC-CCCCCcccCC
Q 047242            7 SVELPILDISQPL----------QPSA---GFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPS-SSTNTYTPHF   72 (217)
Q Consensus         7 ~~~iPvIDl~~~~----------~~a~---Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~Gy~~~~   72 (217)
                      +.+||||||+.+.          ..||   |||||+||||+.++++++++.+++||+||.|+|+++... ...+||.+.+
T Consensus         4 ~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~g   83 (312)
T 3oox_A            4 TSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFG   83 (312)
T ss_dssp             CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEECCC
T ss_pred             CCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCcccccccc
Confidence            5689999998763          2456   999999999999999999999999999999999998763 4678997654


Q ss_pred             CC-------Ccccccccc-------------cCCCccccC------------------------------CCCchhhHHh
Q 047242           73 IA-------SPFFESLRV-------------SGPNFFASA------------------------------NFENKYYESE  102 (217)
Q Consensus        73 ~~-------~~~~e~~~~-------------~~p~~~~~~------------------------------gl~~~~~~~~  102 (217)
                      .+       .||+|.+.+             .++|.||+.                              |+++++|.+.
T Consensus        84 ~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~  163 (312)
T 3oox_A           84 VETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFKPT  163 (312)
T ss_dssp             CCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHH
T ss_pred             ceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            32       478887754             236889853                              8999999999


Q ss_pred             hhCCccceeeeecCCCCCCcccccccccccCCCeeEEEEeCCCCceeEEE----------------echhhHHHHHhCCc
Q 047242          103 FKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTR----------------RNIGDMLQAWGNER  166 (217)
Q Consensus       103 ~~~~~~~lrll~Y~p~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqv~~----------------VniGd~l~~~snG~  166 (217)
                      +..+.+.||+++| |+|+.++..+|+++|||+|+||||+||+++||||+.                ||+||+||+||||+
T Consensus       164 ~~~~~~~lr~~~Y-pp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~~~TnG~  242 (312)
T 3oox_A          164 VQDGNSVLRLLHY-PPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDMLERLTNNV  242 (312)
T ss_dssp             HTTCCCEEEEEEE-CCCSSCCC--CEEEECCCSSEEEEECCTTSCEEEECTTSCEEECCCCSSCEEEEECHHHHHHTTTS
T ss_pred             hcCCcceeeeEec-CCCCCCcCCcCccceecCceEEEEeEcCcCceEEECCCCcEEECCCCCCeEEEEhHHHHHHHhCCe
Confidence            9888889999776 556544344899999999999999999999999975                99999999999999


Q ss_pred             ccccccccccCC----CCceEEEEEeecCCCCcEEecCccccCCCCCCCCC-CccC
Q 047242          167 FRSLEHWVVLRQ----SVNCLSLVFFWCFEEEKVILPSDEVVGEESMRLCK-PFVC  217 (217)
Q Consensus       167 ~ks~~HRV~~~~----~~~R~Si~~F~~p~~d~~i~p~~~~~~~~~~~~y~-~~~~  217 (217)
                      ||||.|||+.++    ..+|||++||++|+.|++|.|+++|+++++|++|+ ++++
T Consensus       243 ~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~  298 (312)
T 3oox_A          243 LPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITA  298 (312)
T ss_dssp             SCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEH
T ss_pred             ecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeH
Confidence            999999998774    46799999999999999999999999999999999 9874
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 217
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 7e-16
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 9e-16
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-12
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 5e-05
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 0.004
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score = 72.6 bits (177), Expect = 7e-16
 Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 71/279 (25%)

Query: 10  LPILDISQPLQPSA--------------GFFLISNHGISRDLYRRLYMISRKLFDLAFDA 55
            PI+ + +                    GFF + NHGI R++   +  +++  +    + 
Sbjct: 3   FPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQ 62

Query: 56  KLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFASANFENKYYESEFKNCHGY------ 109
           + +   +S         +    +ES         ++ +      E   +    +      
Sbjct: 63  RFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEK 122

Query: 110 --------------------------------LRIINCSPPEALENEVEGLGMHTDMSCI 137
                                              ++  PP    + ++GL  HTD   I
Sbjct: 123 LAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGI 182

Query: 138 TIVYQDEIGGLQTTRR----------------NIGDMLQAWGNERFRSLEHWVVLRQSVN 181
            +++QD+        +                N+GD L+   N +++S+ H V+ ++   
Sbjct: 183 ILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGA 242

Query: 182 CLSLVFFWCFEEEKVILPSDEVV---GEESMRLCKPFVC 217
            +SL  F+    + VI P+  +V    EE+ ++   FV 
Sbjct: 243 RMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVF 281
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.4e-55  Score=377.87  Aligned_cols=212  Identities=21%  Similarity=0.318  Sum_probs=173.6

Q ss_pred             CCCCCCcEEeCCCCCCC--------------Cc---cEEEEEccCCCHHHHHHHHHHHHHHhcCCHHHHhhcCCCC---C
Q 047242            5 QTSVELPILDISQPLQP--------------SA---GFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSS---S   64 (217)
Q Consensus         5 ~~~~~iPvIDl~~~~~~--------------a~---Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~   64 (217)
                      .+..+||||||+.+...              ||   |||||+||||+.++++++++++++||+||.|+|+++....   .
T Consensus        41 ~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~  120 (349)
T d1gp6a_          41 EDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK  120 (349)
T ss_dssp             CCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTB
T ss_pred             CCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCC
Confidence            45678999999998642              45   9999999999999999999999999999999999997543   2


Q ss_pred             CCCcccCCCC-----Ccccccc-------cccCCCccccC------------------------------CCCchhhHHh
Q 047242           65 TNTYTPHFIA-----SPFFESL-------RVSGPNFFASA------------------------------NFENKYYESE  102 (217)
Q Consensus        65 ~~Gy~~~~~~-----~~~~e~~-------~~~~p~~~~~~------------------------------gl~~~~~~~~  102 (217)
                      ..||......     .+|.+..       ....++.||..                              |+++++|.+.
T Consensus       121 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~  200 (349)
T d1gp6a_         121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKE  200 (349)
T ss_dssp             CSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHH
T ss_pred             ccccccccccccccccchhhhhcccccccccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHH
Confidence            3344332211     1222211       12345667643                              8888888877


Q ss_pred             hh---CCccceeeeecCCCCCCcccccccccccCCCeeEEEEeCCCCceeEEE---------------echhhHHHHHhC
Q 047242          103 FK---NCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTR---------------RNIGDMLQAWGN  164 (217)
Q Consensus       103 ~~---~~~~~lrll~Y~p~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqv~~---------------VniGd~l~~~sn  164 (217)
                      +.   ...+.||+++| |+++.+...+|+++|||+|+||||+|++++||||+.               ||+||+||+|||
T Consensus       201 ~~~~~~~~~~lrl~~Y-p~~~~~~~~~g~~~HtD~g~lTlL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~Tn  279 (349)
T d1gp6a_         201 VGGLEELLLQMKINYY-PKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSN  279 (349)
T ss_dssp             TTHHHHCEEEEEEEEE-CCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTT
T ss_pred             hccccccceeeeeccc-ccccchhhccccccCCCCcceEEEeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhC
Confidence            63   34567899555 677666778899999999999999999999999977               999999999999


Q ss_pred             CcccccccccccCCCCceEEEEEeecCCCCcEE-ecCccccCCCCCCCCCCccC
Q 047242          165 ERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVI-LPSDEVVGEESMRLCKPFVC  217 (217)
Q Consensus       165 G~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~p~~~~~~~~~~~~y~~~~~  217 (217)
                      |+||||+|||+.+++.+|||++||++|+.|++| .|+++|+++++|++|+|+++
T Consensus       280 G~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t~  333 (349)
T d1gp6a_         280 GKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF  333 (349)
T ss_dssp             TSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEH
T ss_pred             CCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCccH
Confidence            999999999999988999999999999999865 89999999999999999875
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure