Citrus Sinensis ID: 047253

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68

MSDDAGQMLMVYDDPSDQRSLSLDDTSSTEESPDETRLSLESTNDVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSSRCGCQAYMRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKEKDPNFRYEYTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTKHALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQAAEQQTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDGFLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPLRWRKISTHSVKLLQSSPSDHAERIQFLQSMVSSLIAESVKSKERLDLATEQVSYLLSRIRQQPVSTQGLRDISPLHRNL

cccccccccEEcccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccEEEEEccccccEEEEEEcccccHHHHHHcccEEEEEEcccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEEEcccEEEEEEEEEEccEEEEccccccEEEEEEccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccc

ccccccccEEEEEccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEEEEcEcccccEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEEcccccccccHHHcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEccEEcccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEcccccEEEEEEEccccEEEEEcccccEEEEEcHHEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc

msddagqmlmvyddpsdqrslslddtssteespdetrlslestndvvpyigqrfpthdAAYEYYSEFAKSCGFSirrhrtegkdgvgkglTRRYFVCHragntpikasnenkpqrnrkssrcgcqAYMRISKVtelgapewrvtgfannhnhellepnqvrflpayrtiseTDKSRILMFAKTGISVQQMMRLMELEkcvepgylpfteKDVRNLLQSIRkldpedesVDLLRMCRNikekdpnfryeytldsnnrLENIAWSYASSIQAYEIFGDAVVFDTThrltaldmplgiwvgvnnygvpcffgctllreeNLRSFSWALKAFLAFmdgkapqtilTDQNMCLKEAIamempvtkhALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALRMQWALpylrsnffagmtttGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQAAEQQTMQQNLQNIclktgapmeshaasvltpFAFSKLQEQLVLAAHyasfpfedgflvRHHTkleggrkvywapqegiiscschqfefsgilcrhtlrvlstgncfqiperylplrwrkiSTHSVkllqsspsdhAERIQFLQSMVSSLIAESVKSKERLDLATEQVSYLLSRIrqqpvstqglrdisplhrnl

MSDDAGQMLmvyddpsdqrslslddtssteespdetrlslestndvvpYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHrtegkdgvgkgltRRYFVCHRagntpikasnenkpqrnrkssrcgcqAYMRISKVTELGAPEWRVTGFANnhnhellepnqvrfLPAYRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSirkldpedesvdLLRMCRnikekdpnfryeyTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTKHALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQAAEQQTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDGFLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPLRWRKISTHSVKLLQSSPSDHAERIQFLQSMVSSLIAEsvkskerlDLATEQVSYLLsrirqqpvstqglrdisplhrnl

********************************************DVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAG********************CGCQAYMRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKL*****SVDLLRMCRNIKEKDPNFRYEYTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTKHALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQA********NLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDGFLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPLRWRKISTHSVKLL************FL***********************QVSYLL***********************

********************************************DVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAG*******************RCGCQAYMRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKEKDPNFRYEYTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTKHALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQAAEQQTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDGFLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPLRWRKIS****************RIQFLQSMVSSLIAESVKSKERLDLATEQVSYL************************

MSDDAGQMLMVYDDP*************************ESTNDVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKAS**************GCQAYMRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKEKDPNFRYEYTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTKHALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQAAEQQTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDGFLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPLRWRKISTHSVKLLQSSPSDHAERIQFLQSMVSSLIAESVKSKERLDLATEQVSYLLSRIRQQPVSTQGLRDISPLHRNL

*******************************************NDVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAG*******************RCGCQAYMRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKEKDPNFRYEYTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTKHALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQAAEQQTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDGFLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPLRWRKISTHSV******PSDHAERIQFLQSMVSSLIAESVKSKERLDLATEQVSYLLSRIRQQPVS**************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		679	2.2.26 [Sep-21-2011]
Q9SY66		680	Protein FAR1-RELATED SEQU	yes	no	1.0	0.998	0.807	0.0
Q9LKR4		685	Putative protein FAR1-REL	no	no	0.930	0.922	0.420	1e-147
Q9SZL8		788	Protein FAR1-RELATED SEQU	no	no	0.877	0.756	0.308	3e-76
Q9SWG3		827	Protein FAR-RED IMPAIRED	no	no	0.863	0.708	0.284	4e-66
Q9ZVC9		851	Protein FAR1-RELATED SEQU	no	no	0.835	0.666	0.273	3e-55
Q6NQJ7		732	Protein FAR1-RELATED SEQU	no	no	0.789	0.732	0.272	5e-53
Q9LIE5		839	Protein FAR-RED ELONGATED	no	no	0.758	0.613	0.261	1e-52
Q9M8J3		764	Protein FAR1-RELATED SEQU	no	no	0.792	0.704	0.271	7e-52
Q9SSQ4		703	Protein FAR1-RELATED SEQU	no	no	0.762	0.736	0.269	2e-50
Q3E7I5		788	Protein FAR1-RELATED SEQU	no	no	0.796	0.686	0.266	4e-49

>sp\|Q9SY66\|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1	Back alignment and function desciption

 Score = 1193 bits (3086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/680 (80%), Positives = 618/680 (90%), Gaps = 1/680 (0%)

Query: 1   MSDDAGQMLMVYDDPSDQRSLSLDDTSSTEESPDETRLSLESTNDVVPYIGQRFPTHDAA 60
           MSDD GQML++YDDPSDQRSLSLDD SSTEESPD+  LSLE+ ++ +PY+GQ F THD A
Sbjct: 1   MSDDPGQMLLIYDDPSDQRSLSLDDASSTEESPDDNNLSLEAVHNAIPYLGQIFLTHDTA 60

Query: 61  YEYYSEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSS 120
           YE+YS FAK CGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIK  +E KPQRNR+SS
Sbjct: 61  YEFYSTFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKTLSEGKPQRNRRSS 120

Query: 121 RCGCQAYMRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMF 180
           RCGCQAY+RISK+TELG+ EWRVTGFAN+HNHELLEPNQVRFLPAYR+IS+ DKSRILMF
Sbjct: 121 RCGCQAYLRISKLTELGSTEWRVTGFANHHNHELLEPNQVRFLPAYRSISDADKSRILMF 180

Query: 181 AKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKE 240
           +KTGISVQQMMRL+ELEKCVEPG+LPFTEKDVRNLLQS +KLDPEDE++D LRMC++IKE
Sbjct: 181 SKTGISVQQMMRLLELEKCVEPGFLPFTEKDVRNLLQSFKKLDPEDENIDFLRMCQSIKE 240

Query: 241 KDPNFRYEYTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVN 300
           KDPNF++E+TLD+N++LENIAWSYASSIQ+YE+FGDAVVFDTTHRL+A++MPLGIWVGVN
Sbjct: 241 KDPNFKFEFTLDANDKLENIAWSYASSIQSYELFGDAVVFDTTHRLSAVEMPLGIWVGVN 300

Query: 301 NYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTK 360
           NYGVPCFFGC LLR+ENLRS+SWAL+AF  FM+GKAPQTILTD NMCLKEAIA EMP TK
Sbjct: 301 NYGVPCFFGCVLLRDENLRSWSWALQAFTGFMNGKAPQTILTDHNMCLKEAIAGEMPATK 360

Query: 361 HALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNR 420
           HALCIWM+V KFPSWFNA LGERYN+WKAEFYRLY+LES+E+FE+GWRDMVNSFGLHTNR
Sbjct: 361 HALCIWMVVGKFPSWFNAGLGERYNDWKAEFYRLYHLESVEEFELGWRDMVNSFGLHTNR 420

Query: 421 HIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVD 480
           HI NL+A R  W+LPYLRS+F AGMT TG SKAINAFIQRFL AQTRLAHFVEQVAV VD
Sbjct: 421 HINNLYASRSLWSLPYLRSHFLAGMTLTGRSKAINAFIQRFLSAQTRLAHFVEQVAVVVD 480

Query: 481 FKDQAAEQQTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDG 540
           FKDQA EQQTMQQNLQNI LKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASF  ++G
Sbjct: 481 FKDQATEQQTMQQNLQNISLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFQMDEG 540

Query: 541 FLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPL 600
           +LVRHHTKL+GGRKVYW PQEGIISCSC  FEFSG LCRH LRVLSTGNCFQ+P+RYLPL
Sbjct: 541 YLVRHHTKLDGGRKVYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQVPDRYLPL 600

Query: 601 RWRKISTHSVKLLQSSPSDHAERIQFLQSMVSSLIAESVKSKERLDLATEQVSYLLSRIR 660
           RWR+IST   K  +S+  DH ER+Q LQ++VS+L++ES KSKERLD+ATEQ S LLSRIR
Sbjct: 601 RWRRISTSFSKTFRSNAEDHGERVQLLQNLVSTLVSESAKSKERLDIATEQTSILLSRIR 660

Query: 661 QQPVSTQGLRDI-SPLHRNL 679
           +QPVS+  +RDI S + RN 
Sbjct: 661 EQPVSSLAIRDISSSVQRNF 680

Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LKR4\|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2	Back alignment and function description

>sp\|Q9SZL8\|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1	Back alignment and function description

>sp\|Q9SWG3\|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1	Back alignment and function description

>sp\|Q9ZVC9\|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2	Back alignment and function description

>sp\|Q6NQJ7\|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2	Back alignment and function description

>sp\|Q9LIE5\|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1	Back alignment and function description

>sp\|Q9M8J3\|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1	Back alignment and function description

>sp\|Q9SSQ4\|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1	Back alignment and function description

>sp\|Q3E7I5\|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		679
147795787		671	hypothetical protein VITISV_037071 [Viti	0.988	1.0	0.875	0.0
359486139		675	PREDICTED: protein FAR1-RELATED SEQUENCE	0.988	0.994	0.871	0.0
224129766		679	predicted protein [Populus trichocarpa]	0.998	0.998	0.876	0.0
255575936		684	conserved hypothetical protein [Ricinus	1.0	0.992	0.857	0.0
356535278		679	PREDICTED: protein FAR1-RELATED SEQUENCE	1.0	1.0	0.845	0.0
449462798		679	PREDICTED: protein FAR1-RELATED SEQUENCE	1.0	1.0	0.833	0.0
18391130		680	protein FAR1-related sequence 11 [Arabid	1.0	0.998	0.807	0.0
357445205		691	FAR1-related protein [Medicago truncatul	0.977	0.960	0.804	0.0
357167678		686	PREDICTED: protein FAR1-RELATED SEQUENCE	0.961	0.951	0.669	0.0
225431875		709	PREDICTED: protein FAR1-RELATED SEQUENCE	0.985	0.943	0.615	0.0

>gi\|147795787\|emb\|CAN72074.1\| hypothetical protein VITISV_037071 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1277 bits (3305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/672 (87%), Positives = 634/672 (94%), Gaps = 1/672 (0%)

Query: 8   MLMVYDDPSDQRSLSLDDTSSTEESPDETRLSLESTNDVVPYIGQRFPTHDAAYEYYSEF 67
           ML+VYDDPSDQRSLSLDDTSSTEESPDETRLSLE+T D +PYIGQRF THDAAYE+YSEF
Sbjct: 1   MLVVYDDPSDQRSLSLDDTSSTEESPDETRLSLETTTDAIPYIGQRFVTHDAAYEFYSEF 60

Query: 68  AKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSSRCGCQAY 127
           AK CGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIK SNE+KPQRNRKSSRCGCQAY
Sbjct: 61  AKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKTSNESKPQRNRKSSRCGCQAY 120

Query: 128 MRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISV 187
           +RISK TELGAPEWRVTGFAN+HNHELLEPNQVRFLPAYRTIS+ DKSRILMFAKTGISV
Sbjct: 121 LRISKTTELGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKSRILMFAKTGISV 180

Query: 188 QQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKEKDPNFRY 247
           QQMMRLMELEKCVEPGYLPFTEKDVRNLLQS RKLDPEDES+DLLRMCRNIK+KDPNF++
Sbjct: 181 QQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEDESIDLLRMCRNIKDKDPNFKF 240

Query: 248 EYTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCF 307
           E+TLD +NRLENI WSYASSIQ+Y++FGDAVVFDTTHRLTA DMPLGIWVG+NNYG+PCF
Sbjct: 241 EFTLDPSNRLENITWSYASSIQSYDVFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCF 300

Query: 308 FGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTKHALCIWM 367
           FGC LLREENLRSFSWALKAFL FM+GKAPQTILTDQNMCLK+AIAMEMP TKHALCIW+
Sbjct: 301 FGCVLLREENLRSFSWALKAFLGFMNGKAPQTILTDQNMCLKDAIAMEMPTTKHALCIWL 360

Query: 368 IVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFA 427
           IV KFPSWFNAVLGERYNEWKAEFYRLYNLES+EDFE+GWRDMVN FGLHTNRH+ANLFA
Sbjct: 361 IVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWRDMVNLFGLHTNRHVANLFA 420

Query: 428 LRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQAAE 487
           LR  WALPYLR++FFAGMTTTG SK+INAFIQRFL AQTRLAHFVEQVAVAVDFKDQA E
Sbjct: 421 LRSLWALPYLRTHFFAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQAGE 480

Query: 488 QQTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDGFLVRHHT 547
           QQTMQQNLQN+CLKTGAPMESHAA++LTP+AF+KLQ+Q+V A HYASFP EDGFLVRHHT
Sbjct: 481 QQTMQQNLQNLCLKTGAPMESHAATILTPYAFTKLQDQIVYATHYASFPMEDGFLVRHHT 540

Query: 548 KLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPLRWRKIST 607
           KLEGGRKVYW P+EGIISCSCHQF+FSGILCRH LRVLSTGNCFQIPERYLP+RWR+IST
Sbjct: 541 KLEGGRKVYWVPREGIISCSCHQFDFSGILCRHALRVLSTGNCFQIPERYLPVRWRRIST 600

Query: 608 HSVKLLQSSPSDHAERIQFLQSMVSSLIAESVKSKERLDLATEQVSYLLSRIRQQPVSTQ 667
            S KL Q+ PSDHAE++Q LQSMVS+L+ ES KSKERLD ATEQVS LLSRIR+QPVS Q
Sbjct: 601 SSTKLFQTIPSDHAEKVQLLQSMVSTLVTESAKSKERLDTATEQVSILLSRIREQPVSIQ 660

Query: 668 GLRDISPLHRNL 679
           G RDI P+HRNL
Sbjct: 661 GTRDI-PIHRNL 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359486139\|ref\|XP_002265418.2\| PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224129766\|ref\|XP_002328797.1\| predicted protein [Populus trichocarpa] gi\|222839095\|gb\|EEE77446.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255575936\|ref\|XP_002528865.1\| conserved hypothetical protein [Ricinus communis] gi\|223531716\|gb\|EEF33539.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356535278\|ref\|XP_003536175.1\| PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Glycine max]	Back alignment and taxonomy information

>gi\|449462798\|ref\|XP_004149127.1\| PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Cucumis sativus] gi\|449494608\|ref\|XP_004159596.1\| PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|18391130|ref|NP_563865.1| protein FAR1-related sequence 11 [Arabidopsis thaliana] gi|75213376|sp|Q9SY66.1|FRS11_ARATH RecName: Full=Protein FAR1-RELATED SEQUENCE 11 gi|4914326|gb|AAD32874.1|AC005489_12 F14N23.12 [Arabidopsis thaliana] gi|15983442|gb|AAL11589.1|AF424595_1 At1g10240/F14N23_12 [Arabidopsis thaliana] gi|23308171|gb|AAN18055.1| At1g10240/F14N23_12 [Arabidopsis thaliana] gi|332190437|gb|AEE28558.1| protein FAR1-related sequence 11 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357445205\|ref\|XP_003592880.1\| FAR1-related protein [Medicago truncatula] gi\|92893673\|gb\|ABE91851.1\| FAR1; Zinc finger, SWIM-type [Medicago truncatula] gi\|92893917\|gb\|ABE91967.1\| FAR1; Zinc finger, SWIM-type [Medicago truncatula] gi\|355481928\|gb\|AES63131.1\| FAR1-related protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357167678\|ref\|XP_003581280.1\| PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|225431875\|ref\|XP_002271698.1\| PREDICTED: protein FAR1-RELATED SEQUENCE 11 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		679
TAIR\|locus:2012828		680	FRS11 "FAR1-related sequence 1	0.998	0.997	0.808	5.1e-312
TAIR\|locus:2182778		685	FRS10 "FAR1-related sequence 1	0.930	0.922	0.422	6.9e-134
TAIR\|locus:2121060		788	FRS5 "FAR1-related sequence 5"	0.873	0.752	0.314	1.7e-75
TAIR\|locus:2129665		827	FAR1 "FAR-RED IMPAIRED RESPONS	0.927	0.761	0.279	1.9e-67
TAIR\|locus:2059304		851	FRS3 "FAR1-related sequence 3"	0.774	0.618	0.283	5.6e-57
TAIR\|locus:2014639		732	FRS4 "FAR1-related sequence 4"	0.842	0.781	0.271	7.5e-57
TAIR\|locus:2035144		703	FRS6 "FAR1-related sequence 6"	0.782	0.755	0.263	1.7e-51
TAIR\|locus:2090394		839	FHY3 "far-red elongated hypoco	0.774	0.626	0.273	3e-50
TAIR\|locus:2082420		764	FRS7 "FAR1-related sequence 7"	0.634	0.564	0.291	1.4e-48
TAIR\|locus:2144930		788	FRS12 "FAR1-related sequence 1	0.606	0.522	0.287	9.9e-46

TAIR\|locus:2012828 FRS11 "FAR1-related sequence 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2993 (1058.6 bits), Expect = 5.1e-312, P = 5.1e-312
 Identities = 549/679 (80%), Positives = 618/679 (91%)

Query:     1 MSDDAGQMLMVYDDPSDQRSLSLDDTSSTEESPDETRLSLESTNDVVPYIGQRFPTHDAA 60
             MSDD GQML++YDDPSDQRSLSLDD SSTEESPD+  LSLE+ ++ +PY+GQ F THD A
Sbjct:     1 MSDDPGQMLLIYDDPSDQRSLSLDDASSTEESPDDNNLSLEAVHNAIPYLGQIFLTHDTA 60

Query:    61 YEYYSEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSS 120
             YE+YS FAK CGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIK  +E KPQRNR+SS
Sbjct:    61 YEFYSTFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKTLSEGKPQRNRRSS 120

Query:   121 RCGCQAYMRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMF 180
             RCGCQAY+RISK+TELG+ EWRVTGFAN+HNHELLEPNQVRFLPAYR+IS+ DKSRILMF
Sbjct:   121 RCGCQAYLRISKLTELGSTEWRVTGFANHHNHELLEPNQVRFLPAYRSISDADKSRILMF 180

Query:   181 AKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKE 240
             +KTGISVQQMMRL+ELEKCVEPG+LPFTEKDVRNLLQS +KLDPEDE++D LRMC++IKE
Sbjct:   181 SKTGISVQQMMRLLELEKCVEPGFLPFTEKDVRNLLQSFKKLDPEDENIDFLRMCQSIKE 240

Query:   241 KDPNFRYEYTLDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVN 300
             KDPNF++E+TLD+N++LENIAWSYASSIQ+YE+FGDAVVFDTTHRL+A++MPLGIWVGVN
Sbjct:   241 KDPNFKFEFTLDANDKLENIAWSYASSIQSYELFGDAVVFDTTHRLSAVEMPLGIWVGVN 300

Query:   301 NYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTK 360
             NYGVPCFFGC LLR+ENLRS+SWAL+AF  FM+GKAPQTILTD NMCLKEAIA EMP TK
Sbjct:   301 NYGVPCFFGCVLLRDENLRSWSWALQAFTGFMNGKAPQTILTDHNMCLKEAIAGEMPATK 360

Query:   361 HALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWRDMVNSFGLHTNR 420
             HALCIWM+V KFPSWFNA LGERYN+WKAEFYRLY+LES+E+FE+GWRDMVNSFGLHTNR
Sbjct:   361 HALCIWMVVGKFPSWFNAGLGERYNDWKAEFYRLYHLESVEEFELGWRDMVNSFGLHTNR 420

Query:   421 HIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVD 480
             HI NL+A R  W+LPYLRS+F AGMT TG SKAINAFIQRFL AQTRLAHFVEQVAV VD
Sbjct:   421 HINNLYASRSLWSLPYLRSHFLAGMTLTGRSKAINAFIQRFLSAQTRLAHFVEQVAVVVD 480

Query:   481 FKDQAAEQQTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPFEDG 540
             FKDQA EQQTMQQNLQNI LKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASF  ++G
Sbjct:   481 FKDQATEQQTMQQNLQNISLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFQMDEG 540

Query:   541 FLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPL 600
             +LVRHHTKL+GGRKVYW PQEGIISCSC  FEFSG LCRH LRVLSTGNCFQ+P+RYLPL
Sbjct:   541 YLVRHHTKLDGGRKVYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQVPDRYLPL 600

Query:   601 RWRKISTHSVKLLQSSPSDHAERIQFLQSMVSSLIAESVKSKERLDLATEQVSYLLSRIR 660
             RWR+IST   K  +S+  DH ER+Q LQ++VS+L++ES KSKERLD+ATEQ S LLSRIR
Sbjct:   601 RWRRISTSFSKTFRSNAEDHGERVQLLQNLVSTLVSESAKSKERLDIATEQTSILLSRIR 660

Query:   661 QQPVSTQGLRDISP-LHRN 678
             +QPVS+  +RDIS  + RN
Sbjct:   661 EQPVSSLAIRDISSSVQRN 679

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

TAIR\|locus:2182778 FRS10 "FAR1-related sequence 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SY66	FRS11_ARATH	No assigned EC number	0.8073	1.0	0.9985	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00035312001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (678 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		679
PLN03097		846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	1e-66
pfam03101		90	pfam03101, FAR1, FAR1 DNA-binding domain	1e-18
pfam10551		88	pfam10551, MULE, MULE transposase domain	1e-15
smart00575		28	smart00575, ZnF_PMZ, plant mutator transposase zin	6e-05
pfam04434		38	pfam04434, SWIM, SWIM zinc finger	2e-04

>gnl\|CDD\|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

 Score =  234 bits (598), Expect = 1e-66
 Identities = 176/647 (27%), Positives = 286/647 (44%), Gaps = 69/647 (10%)

Query: 32  SPDETRLSLESTNDVVPYIGQRFPTHDAAYEYYSEFAKSCGFSI-----RRHRTEGKDGV 86
           SP    +  +   ++ P  G  F +H  AY +Y E+A+S GF+      RR +T      
Sbjct: 58  SPTGELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKT------ 111

Query: 87  GKGLTRRY----FVCHRAG---------NTPIKASNENKPQR---NRKSSRCGCQAYMRI 130
               +R +    F C R G         N P     +  P+     R  ++  C+A M +
Sbjct: 112 ----SREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGTGRRSCAKTDCKASMHV 167

Query: 131 SKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISVQQM 190
            +  +    +W +  F   HNHELL        PA + +SE  +      A+     + +
Sbjct: 168 KRRPD---GKWVIHSFVKEHNHELL--------PA-QAVSEQTRKMYAAMARQFAEYKNV 215

Query: 191 MRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKEKDPNFRYEYT 250
           + L    K        F +   RNL      L+  D  + LL     ++  + NF Y   
Sbjct: 216 VGLKNDSKS------SFDKG--RNL-----GLEAGDTKI-LLDFFTQMQNMNSNFFYAVD 261

Query: 251 LDSNNRLENIAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGC 310
           L  + RL+N+ W  A S   Y  F D V FDTT+      MPL ++VGVN +      GC
Sbjct: 262 LGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGC 321

Query: 311 TLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEAIAMEMPVTKHALCIWMIVV 370
            L+ +E+  ++SW ++ +L  M G+AP+ I+TDQ+  +K  I+   P   H   +W I+ 
Sbjct: 322 ALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILG 381

Query: 371 KFPSWFNAVLGERYNEWKAEFYR-LYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALR 429
           K       V+ +  N + A+F + +Y   + E+F   W  +++ F L  +  + +L+  R
Sbjct: 382 KVSENLGQVIKQHEN-FMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDR 440

Query: 430 MQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQV-AVAVDFKDQAAEQ 488
            QW   Y+R  F AGM+T   S++INAF  +++  +T +  FV+Q   +  D  ++ A+ 
Sbjct: 441 KQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKA 500

Query: 489 QTMQQNLQNICLKTGAPMESHAASVLTPFAFSKLQEQL--VLAAHYASFPFEDGFLVRHH 546
            +   N Q   LK+ +P+E   + V T   F K Q ++   +A H      ++  +    
Sbjct: 501 DSDTWNKQP-ALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRV 559

Query: 547 TKLEGGRK--VYWAPQEGIISCSCHQFEFSGILCRHTLRVLSTGNCFQIPERYLPLRWRK 604
              E  +   V W   +  +SC C  FE+ G LCRH L VL       IP +Y+  RW K
Sbjct: 560 QDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTK 619

Query: 605 ISTHSVKLLQSSPSDHAERIQFLQSMVS---SLIAESVKSKERLDLA 648
               S  LL         R+Q    +      L  E+  S+E  ++A
Sbjct: 620 -DAKSRHLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIA 665

Length = 846

>gnl\|CDD\|217369 pfam03101, FAR1, FAR1 DNA-binding domain	Back alignment and domain information

>gnl\|CDD\|220806 pfam10551, MULE, MULE transposase domain	Back alignment and domain information

>gnl\|CDD\|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger	Back alignment and domain information

>gnl\|CDD\|218087 pfam04434, SWIM, SWIM zinc finger	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		679
PLN03097		846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551		93	MULE: MULE transposase domain; InterPro: IPR018289	99.86
PF03101		91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	99.8
PF00872		381	Transposase_mut: Transposase, Mutator family; Inte	99.76
PF08731		111	AFT: Transcription factor AFT; InterPro: IPR014842	99.25
COG3328		379	Transposase and inactivated derivatives [DNA repli	99.24
smart00575		28	ZnF_PMZ plant mutator transposase zinc finger.	98.87
PF03108		67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	98.57
PF04434		40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.23
PF01610		249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	96.83
PF06782		470	UPF0236: Uncharacterised protein family (UPF0236);	95.59
PF03106		60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	94.48
PF13610		140	DDE_Tnp_IS240: DDE domain	92.27
PF00665		120	rve: Integrase core domain; InterPro: IPR001584 In	88.98
smart00774		59	WRKY DNA binding domain. The WRKY domain is a DNA	85.37
PRK08561		151	rps15p 30S ribosomal protein S15P; Reviewed	81.51
PF04500		62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	80.8
PF04937		153	DUF659: Protein of unknown function (DUF 659); Int	80.5

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.7e-129  Score=1095.22  Aligned_cols=606  Identities=26%  Similarity=0.462  Sum_probs=535.3

Q ss_pred             CCcccCCcCCCCCCCCCCCCccCCHHHHHHHHHHHHHhcCceEEEcceecccCCCcceEEEEEeeccCCCCCccCCC---
Q 047253           33 PDETRLSLESTNDVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASN---  109 (679)
Q Consensus        33 ~~~~~~~~~~~~~~~P~vGm~F~S~eea~~fy~~yA~~~GF~ir~~~s~~~~~~~k~~~~~~f~C~r~G~~~~k~~~---  109 (679)
                      +++..+..+.+...+|.+||+|+|.|||++||+.||+..||+||+.++++++.. +++++++|+|+|+|+++.+.+.   
T Consensus        59 ~~~~~~~~~~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~-~~ii~r~fvCsreG~~~~~~~~~~~  137 (846)
T PLN03097         59 PTGELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTS-REFIDAKFACSRYGTKREYDKSFNR  137 (846)
T ss_pred             cccccccccCCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCC-CcEEEEEEEEcCCCCCccccccccc
Confidence            344455667778899999999999999999999999999999999999887654 3789999999999987643210   


Q ss_pred             C---------CCCCCCCCccccCccceEEEEEeecCCCCcEEEEecCCCCCCCCCCCCccCCCccccCCChhhHHHHHHH
Q 047253          110 E---------NKPQRNRKSSRCGCQAYMRISKVTELGAPEWRVTGFANNHNHELLEPNQVRFLPAYRTISETDKSRILMF  180 (679)
Q Consensus       110 ~---------~~~~r~~~s~r~gCpa~i~v~~~~~~~~~~w~V~~~~~~HNH~l~~~~~~~~l~s~R~i~~~~k~~i~~l  180 (679)
                      .         ...+++|+.+|+||||+|+|++.   ..|+|+|+.|+.+|||||.++..+         +          
T Consensus       138 ~~~~~~k~~~~~~~~rR~~tRtGC~A~m~Vk~~---~~gkW~V~~fv~eHNH~L~p~~~~---------~----------  195 (846)
T PLN03097        138 PRARQTKQDPENGTGRRSCAKTDCKASMHVKRR---PDGKWVIHSFVKEHNHELLPAQAV---------S----------  195 (846)
T ss_pred             ccccccccCcccccccccccCCCCceEEEEEEc---CCCeEEEEEEecCCCCCCCCcccc---------c----------
Confidence            0         01123456789999999999886   368999999999999999876432         1          


Q ss_pred             hhcCCCHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHhhhcc-CCcchHHHHHHHHHhhccCCCCcEEEEeeCCCCccce
Q 047253          181 AKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKL-DPEDESVDLLRMCRNIKEKDPNFRYEYTLDSNNRLEN  259 (679)
Q Consensus       181 ~~~gi~~~~i~~~l~~~~g~~~~~~~~~~~dv~N~~~~~r~~-~~~~d~~~ll~~~~~~~~~np~~~~~~~~d~~~~~~~  259 (679)
                          +.++.++..+....+ ...++..+..|..|...+.|+. ...+|++.|++||+++|.+||+|||++++|++|++++
T Consensus       196 ----~~~r~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~n  270 (846)
T PLN03097        196 ----EQTRKMYAAMARQFA-EYKNVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKN  270 (846)
T ss_pred             ----hhhhhhHHHHHhhhh-ccccccccchhhcchhhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeee
Confidence                123334444433333 2456667778888877766643 4579999999999999999999999999999999999


Q ss_pred             eEecchhhHHHHHHcCcEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCce
Q 047253          260 IAWSYASSIQAYEIFGDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQT  339 (679)
Q Consensus       260 ifw~~~~~~~~~~~f~dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~  339 (679)
                      |||+|+.|+.+|.+|||||+||+||+||+|++||++|+|||||+|+++|||||+.+|+.+||.|||++|+++|+++.|++
T Consensus       271 iFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~t  350 (846)
T PLN03097        271 LFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKV  350 (846)
T ss_pred             EEeccHHHHHHHHhcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccHHHHHHHHhhCCCCccccchhhhhhhhcccchhhhccchhHHHHHHhh-hccCCCHHHHHHHHHHhHhhcCCCc
Q 047253          340 ILTDQNMCLKEAIAMEMPVTKHALCIWMIVVKFPSWFNAVLGERYNEWKAEFYR-LYNLESIEDFEMGWRDMVNSFGLHT  418 (679)
Q Consensus       340 iitD~~~~~~~Ai~~vfP~a~h~lC~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~eF~~~w~~l~~~~~~~~  418 (679)
                      ||||+|.+|++||++|||+|.|++|.|||++|+.++++.... ..+.|..+|+. ++.+.+++||+..|..|+++|++++
T Consensus       351 IiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~-~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~  429 (846)
T PLN03097        351 IITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIK-QHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKE  429 (846)
T ss_pred             EEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhh-hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999987653 35789999987 5668999999999999999999999


Q ss_pred             cHHHHHHHHhhcccccccccccccccccccCCcchhHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 047253          419 NRHIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAFIQRFLGAQTRLAHFVEQVAVAVDFKDQAAEQQTMQQNLQNI  498 (679)
Q Consensus       419 ~~~l~~~~~~re~W~~~y~~~~~~~g~~tt~~~Es~n~~lk~~~~~~~~l~~f~~~~~~~~~~~~~~e~~~~~~~~~~~~  498 (679)
                      ++||+.||+.|++||++|+++.|++||.||+|+||+|++||+|+++.++|..|+++|+.+++.++++|+++++.+..+.|
T Consensus       430 n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P  509 (846)
T PLN03097        430 DEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQP  509 (846)
T ss_pred             cHHHHHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             ccccCChhHHHHHhhchHHHHHHHHHHHHHhcCceeeec-cCC----eEEEEeeeecCceEEEEccCCCeEEEeccCccc
Q 047253          499 CLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFPF-EDG----FLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEF  573 (679)
Q Consensus       499 ~l~t~~~~e~qa~~~yT~~~f~~fq~el~~s~~~~v~~~-~~g----y~V~~~~~~~~~~~V~~~~~~~~~~CsC~~f~~  573 (679)
                      .+++.+|||+||+++|||+||++||+|+..+..|.+... ++|    |.|....+ ...|.|.+++....++|+|++|++
T Consensus       510 ~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~-~~~~~V~~d~~~~~v~CsC~kFE~  588 (846)
T PLN03097        510 ALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEK-NQDFTVTWNQTKLEVSCICRLFEY  588 (846)
T ss_pred             ccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecC-CCcEEEEEecCCCeEEeeccCeec
Confidence            999999999999999999999999999999999887654 333    88876544 567999999999999999999999


Q ss_pred             cCccchhHHHHHhcCCcccCCCCCcccccccccCCcccccCCC--CCChhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 047253          574 SGILCRHTLRVLSTGNCFQIPERYLPLRWRKISTHSVKLLQSS--PSDHAERIQFLQSMVSSLIAESVKSKERLDLATEQ  651 (679)
Q Consensus       574 ~GipC~Hil~Vl~~~~i~~iP~~yil~RWtk~a~~~~~~~~~~--~~~~~~r~~~l~~~~~~~~~~a~~s~e~~~~~~~~  651 (679)
                      .||||+|||+||.++||.+||++||++||||+|+.....+...  ..+...||+.|++.+.+++.+|+.|+|.|..|+++
T Consensus       589 ~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~~~~~~~~~~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~  668 (846)
T PLN03097        589 KGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRA  668 (846)
T ss_pred             CccchhhHHHHHhhcCcccCchhhhhhhchhhhhhcccCccccccccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999876544332  33456799999999999999999999999999999


Q ss_pred             HHHHHHhhccccccccC
Q 047253          652 VSYLLSRIRQQPVSTQG  668 (679)
Q Consensus       652 l~~~~~~~~~~~~~~~~  668 (679)
                      |++++++++.|.-+...
T Consensus       669 L~e~~~~~~~~~n~~~~  685 (846)
T PLN03097        669 LEEAFGNCISMNNSNKS  685 (846)
T ss_pred             HHHHHHHHHHhhccCCC
Confidence            99999999876655433

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]	Back alignment and domain information

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants	Back alignment and domain information

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis	Back alignment and domain information

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00575 ZnF_PMZ plant mutator transposase zinc finger	Back alignment and domain information

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]	Back alignment and domain information

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function	Back alignment and domain information

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif	Back alignment and domain information

>PF13610 DDE_Tnp_IS240: DDE domain	Back alignment and domain information

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known	Back alignment and domain information

>smart00774 WRKY DNA binding domain	Back alignment and domain information

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed	Back alignment and domain information

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		679
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 79/587 (13%), Positives = 154/587 (26%), Gaps = 194/587 (33%)

Query: 148 NNHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPF 207
           ++H+H   E  + ++   Y+ I       + +F    +       + ++ K +       
Sbjct: 2   HHHHHMDFETGEHQY--QYKDI-------LSVFEDAFVDNFDCKDVQDMPKSI------L 46

Query: 208 TEKDVRNLLQSIRKLDPEDESVDLLRMCRNIKEKDPNFRYEYTLDSNNRLENIAWSYASS 267
           +++++ +++ S             L     +  K      ++  +      N  +   S 
Sbjct: 47  SKEEIDHIIMS----KDAVSGTLRLFWT--LLSKQEEMVQKFVEEVLR--INYKF-LMSP 97

Query: 268 IQA-----------YE-----IFGDAVVFDTTH--R---LTALDMPL-----GIWVGVNN 301
           I+            Y      ++ D  VF   +  R      L   L        V +  
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-- 155

Query: 302 YGVPCFFGC--TLLREENLRSFSWALKAFLAFMDGKA----------PQTILTD-QNMCL 348
            GV    G   T +  +   S+          MD K           P+T+L   Q +  
Sbjct: 156 DGVL---GSGKTWVALDVCLSYK-----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 349 KEAIAMEMPVTKHALCIWMIVVKFPSWFNAVLGERYNEWKAEFYRLYNLESIEDFEMGWR 408
           +      +     +       +K           R +  +AE  RL          +  +
Sbjct: 208 Q------IDPNWTSRSDHSSNIKL----------RIHSIQAELRRL----------LKSK 241

Query: 409 DMVNSFGLHTNRHIANLFALRMQWALPYLRSNFFAGMTTTGHSKAINAF-IQ-RFLGAQT 466
              N            L  L                     ++KA NAF +  + L   T
Sbjct: 242 PYENC-----------LLVLLNVQ-----------------NAKAWNAFNLSCKIL-LTT 272

Query: 467 RLAHFVEQVAVA-------VDFKDQAAEQQTMQQNLQNICLKTGAPMESHAASVLTPFAF 519
           R     + ++ A                 +     L    L               P   
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 520 SKLQEQLVLAAHYASFPFEDGFLVRHHTKLEGGRKVYWAPQEGIISCSCHQFEFSGILCR 579
           S      ++A            +       +  + V       II  S +  E +    R
Sbjct: 331 S------IIAE----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--R 372

Query: 580 HTLRVLSTGNCFQ----IPERYLPLRWRKISTHSVKLLQSSPSDHAERIQFLQSMVS-SL 634
                LS    F     IP   L L W  +    V             +  +  +   SL
Sbjct: 373 KMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDV-------------MVVVNKLHKYSL 416

Query: 635 IAESVKSKERLDLATEQVSY--LLSRIRQQPVSTQGLRDISPLHRNL 679
           + +  K           +S   +   ++ +      L +   LHR++
Sbjct: 417 VEKQPKE--------STISIPSIYLELKVK------LENEYALHRSI 449

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		679
2ayd_A		76	WRKY transcription factor 1; beta strands, zinc fi	94.78
1wj2_A		78	Probable WRKY transcription factor 4; DNA-binding	94.07
2rpr_A		87	Flywch-type zinc finger-containing protein 1; flyw	83.27

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}	Back alignment and structure

Probab=94.78  E-value=0.076  Score=41.36  Aligned_cols=58  Identities=19%  Similarity=0.503  Sum_probs=40.1

Q ss_pred             cCceEEEcceecccCCCcceEEEEEeeccCCCCCccCCCCCCCCCCCCccccCccceEEEEEeecCCCCcEEEEecCCCC
Q 047253           71 CGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSSRCGCQAYMRISKVTELGAPEWRVTGFANNH  150 (679)
Q Consensus        71 ~GF~ir~~~s~~~~~~~k~~~~~~f~C~r~G~~~~k~~~~~~~~r~~~s~r~gCpa~i~v~~~~~~~~~~w~V~~~~~~H  150 (679)
                      -||..|+--.+.-++.  ..-+.+|.|+                      ..||||+=.|.+..  .+....++....+|
T Consensus        16 DGy~WRKYGQK~ikgs--~~PRsYYrCt----------------------~~gC~a~K~Ver~~--~d~~~~~~tY~G~H   69 (76)
T 2ayd_A           16 DGYRWRKYGQKSVKGS--PYPRSYYRCS----------------------SPGCPVKKHVERSS--HDTKLLITTYEGKH   69 (76)
T ss_dssp             CSSCEEEEEEECCTTC--SSCEEEEEEC----------------------STTCCCEEEEEECS--SSTTEEEEEEESCC
T ss_pred             CCchhhhCcccccCCC--CCceeEeEcC----------------------CCCCCceeeEEEEC--CCCCEEEEEEccCc
Confidence            4777777544333322  3346678884                      23799998888864  35678888889999


Q ss_pred             CCCC
Q 047253          151 NHEL  154 (679)
Q Consensus       151 NH~l  154 (679)
                      ||++
T Consensus        70 ~H~~   73 (76)
T 2ayd_A           70 DHDM   73 (76)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9997

PyMOL of 2ayd

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*	Back alignment and structure

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		679
d1wj2a_		71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	94.62

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.62  E-value=0.023  Score=41.66  Aligned_cols=58  Identities=26%  Similarity=0.521  Sum_probs=39.0

Q ss_pred             cCceEEEcceecccCCCcceEEEEEeeccCCCCCccCCCCCCCCCCCCccccCccceEEEEEeecCCCCcEEEEecCCCC
Q 047253           71 CGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSSRCGCQAYMRISKVTELGAPEWRVTGFANNH  150 (679)
Q Consensus        71 ~GF~ir~~~s~~~~~~~k~~~~~~f~C~r~G~~~~k~~~~~~~~r~~~s~r~gCpa~i~v~~~~~~~~~~w~V~~~~~~H  150 (679)
                      -||..|+--.+.-++.  ..-+-+|.|+.                      .||+|+=.|.+..  .++.-.++....+|
T Consensus        12 DGy~WRKYGQK~ikgs--~~pRsYYrCt~----------------------~~C~a~K~Vqr~~--~d~~~~~vtY~G~H   65 (71)
T d1wj2a_          12 DGYRWRKYGQKVVKGN--PYPRSYYKCTT----------------------PGCGVRKHVERAA--TDPKAVVTTYEGKH   65 (71)
T ss_dssp             SSSCBCCCEEECCTTC--SSCEEEEEEEC----------------------SSCEEEEEEEEET--TTTSEEEEEEESCC
T ss_pred             CCcEecccCceeccCC--CCceEEEEccc----------------------cCCCCcceEEEEc--CCCCEEEEEEeeEe
Confidence            4677766433322222  34467888952                      3699999998875  34667778888999


Q ss_pred             CCCC
Q 047253          151 NHEL  154 (679)
Q Consensus       151 NH~l  154 (679)
                      ||++
T Consensus        66 ~h~~   69 (71)
T d1wj2a_          66 NHDL   69 (71)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9986

PyMOL of d1wj2a_