Citrus Sinensis ID: 047256
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 383 | ||||||
| 255581057 | 413 | lactosylceramide 4-alpha-galactosyltrans | 0.832 | 0.772 | 0.668 | 1e-132 | |
| 225440658 | 416 | PREDICTED: uncharacterized protein At4g1 | 0.997 | 0.918 | 0.579 | 1e-131 | |
| 297740224 | 495 | unnamed protein product [Vitis vinifera] | 0.997 | 0.771 | 0.579 | 1e-131 | |
| 147853779 | 413 | hypothetical protein VITISV_030953 [Viti | 0.997 | 0.924 | 0.579 | 1e-130 | |
| 356494971 | 420 | PREDICTED: uncharacterized protein At4g1 | 0.968 | 0.883 | 0.551 | 1e-126 | |
| 224140397 | 279 | predicted protein [Populus trichocarpa] | 0.691 | 0.949 | 0.781 | 1e-122 | |
| 356523288 | 392 | PREDICTED: uncharacterized protein At4g1 | 0.895 | 0.875 | 0.556 | 1e-118 | |
| 357505891 | 447 | Lactosylceramide 4-alpha-galactosyltrans | 0.947 | 0.812 | 0.524 | 1e-117 | |
| 449483691 | 414 | PREDICTED: lactosylceramide 4-alpha-gala | 0.963 | 0.891 | 0.524 | 1e-116 | |
| 449440279 | 414 | PREDICTED: lactosylceramide 4-alpha-gala | 0.963 | 0.891 | 0.524 | 1e-116 |
| >gi|255581057|ref|XP_002531344.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] gi|223529042|gb|EEF31028.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/347 (66%), Positives = 261/347 (75%), Gaps = 28/347 (8%)
Query: 65 SIQEETDKADSGSWNSLKPPFNVTEDERTAWFRKKLPEFDILKSDNLTEQFHGR------ 118
S +E D+ NSL PFNVTE+ER WF++KLP +I KS+ LT QFH R
Sbjct: 67 STRENIDEVRIDELNSLVAPFNVTEEERIIWFKRKLPGLEIFKSNELTRQFHSRVLEFFD 126
Query: 119 ---------------------EVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDG 157
E L ++S FK HPNGCLMILS T+D+ GYR+LKPL+D
Sbjct: 127 QKCDVQFFMTWISPVSSFGRREFLAMDSLFKVHPNGCLMILSGTMDSIQGYRILKPLVDV 186
Query: 158 KFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYL 217
FKVAAVTPDL FLF+NTPA W EM SGNKDPGEIPL+QNLSNLIRLAV+YKYGG+Y+
Sbjct: 187 GFKVAAVTPDLQFLFKNTPAEIWLQEMMSGNKDPGEIPLSQNLSNLIRLAVIYKYGGIYI 246
Query: 218 DTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGN 277
DTDFI LKSF+GLRNSI AQSID VS NWTRLNNAVL+FD NHPL++KFIEEFAATFDGN
Sbjct: 247 DTDFIFLKSFKGLRNSIGAQSIDAVSRNWTRLNNAVLVFDKNHPLMYKFIEEFAATFDGN 306
Query: 278 KWGHNGPYLVSRVVQRVQTRPGY-NFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNA 336
KWGHNGPYLVSRVV RV RP Y NFT+LPP AFYPV+WNRIGG FK P++QA SRWV A
Sbjct: 307 KWGHNGPYLVSRVVARVAGRPEYNNFTVLPPKAFYPVDWNRIGGFFKKPEDQAASRWVKA 366
Query: 337 KLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYSS 383
KLLQLS E YG+HLWNKQS I IEEGSVM +IS HCVIC+ YSS
Sbjct: 367 KLLQLSGETYGLHLWNKQSCRIRIEEGSVMAGLISDHCVICEYDYSS 413
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440658|ref|XP_002274455.1| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297740224|emb|CBI30406.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|147853779|emb|CAN83821.1| hypothetical protein VITISV_030953 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356494971|ref|XP_003516354.1| PREDICTED: uncharacterized protein At4g19900-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224140397|ref|XP_002323569.1| predicted protein [Populus trichocarpa] gi|222868199|gb|EEF05330.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356523288|ref|XP_003530272.1| PREDICTED: uncharacterized protein At4g19900-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357505891|ref|XP_003623234.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] gi|355498249|gb|AES79452.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449483691|ref|XP_004156661.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449440279|ref|XP_004137912.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 383 | ||||||
| TAIR|locus:2150104 | 407 | AT5G01250 [Arabidopsis thalian | 0.968 | 0.911 | 0.506 | 1.1e-94 | |
| TAIR|locus:4010713690 | 380 | AT2G38152 [Arabidopsis thalian | 0.778 | 0.784 | 0.579 | 1.3e-91 | |
| TAIR|locus:2042897 | 405 | AT2G38150 [Arabidopsis thalian | 0.702 | 0.664 | 0.551 | 1e-90 | |
| TAIR|locus:2095264 | 411 | AT3G09020 [Arabidopsis thalian | 0.704 | 0.656 | 0.6 | 5.9e-89 | |
| TAIR|locus:2206006 | 435 | AT1G61050 [Arabidopsis thalian | 0.691 | 0.609 | 0.514 | 1.1e-78 | |
| MGI|MGI:3512453 | 359 | A4galt "alpha 1,4-galactosyltr | 0.608 | 0.649 | 0.337 | 1.3e-29 | |
| RGD|621583 | 360 | A4galt "alpha 1,4-galactosyltr | 0.608 | 0.647 | 0.340 | 2.1e-29 | |
| UNIPROTKB|G3MZ03 | 368 | LOC618369 "Uncharacterized pro | 0.608 | 0.633 | 0.329 | 1.2e-28 | |
| UNIPROTKB|F1PS29 | 411 | A4GALT "Uncharacterized protei | 0.603 | 0.562 | 0.330 | 5.7e-27 | |
| UNIPROTKB|I3L755 | 359 | A4GALT "Uncharacterized protei | 0.603 | 0.643 | 0.330 | 5.7e-27 |
| TAIR|locus:2150104 AT5G01250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 196/387 (50%), Positives = 251/387 (64%)
Query: 5 RLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISNRPLL 64
RL S A I T ++ T +ISN S+ S +K+ K I + PL
Sbjct: 18 RLNQSGSSSLFTAFAISFVTLIVVTTFT-LISNFSMQPHRDFS-GVKIEIKRVIPHLPLS 75
Query: 65 SIQEETDKADS-GSWNSLKPPFNVTE----DERTAWFRKKLPEF--D------ILKSDNL 111
S + E +++D + V E D + F+K++ EF D ++ +
Sbjct: 76 S-EREGERSDLLKQQTQVNEKLQVIEVFSGDNLSDKFQKRVNEFVGDGCEVNFVMTWISP 134
Query: 112 TEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFL 171
+ F REVL +ES FK+HP GCLMILS T+D+P GY LKP +D +KV AVTPDL FL
Sbjct: 135 ADFFGNREVLAIESVFKSHPYGCLMILSATMDSPQGYATLKPFIDRGYKVLAVTPDLPFL 194
Query: 172 FRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLR 231
+ T W DE+KSG +DPG+I LAQNLSNL+RLA LYKYGGVYLDTD I+LKSF+GLR
Sbjct: 195 LKGTAGELWLDEIKSGKRDPGKISLAQNLSNLMRLAYLYKYGGVYLDTDMIVLKSFKGLR 254
Query: 232 NSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVV 291
N I AQ++D S NWTRLNNAVLIFD NHPLL KF+EEFA TF+GN WG+NGPYLVSRV
Sbjct: 255 NVIGAQTLDPSSTNWTRLNNAVLIFDKNHPLLLKFMEEFAKTFNGNIWGYNGPYLVSRVA 314
Query: 292 QRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLW 351
+ V+ GYNFT++ P+ FY VNW I LFKVP+ + DS+WV KLL + R YG+HLW
Sbjct: 315 RAVEGSSGYNFTVMRPSVFYSVNWLEIKKLFKVPKTEKDSKWVKTKLLHMQRNGYGLHLW 374
Query: 352 NKQSNSIAIEEGSVMGRMISQHCVICD 378
NK S IE+GS M +++S+HC+IC+
Sbjct: 375 NKFSRKYEIEQGSAMWKLVSEHCIICE 401
|
|
| TAIR|locus:4010713690 AT2G38152 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2042897 AT2G38150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2095264 AT3G09020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2206006 AT1G61050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:3512453 A4galt "alpha 1,4-galactosyltransferase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|621583 A4galt "alpha 1,4-galactosyltransferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3MZ03 LOC618369 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PS29 A4GALT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3L755 A4GALT "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00021487001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (413 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00029535001 | • | 0.899 | |||||||||
| GSVIVG00003707001 | • | 0.899 | |||||||||
| GSVIVG00034182001 | • | 0.800 | |||||||||
| GSVIVG00030925001 | • | 0.800 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 383 | |||
| pfam04572 | 135 | pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferas | 4e-41 | |
| pfam04488 | 93 | pfam04488, Gly_transf_sug, Glycosyltransferase sug | 3e-20 |
| >gnl|CDD|146960 pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferase conserved region | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 4e-41
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 21/136 (15%)
Query: 254 LIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGY----------NFT 303
+ F+ +HPL + +FAA F+GNKWGHNGP LV+RV+ R G FT
Sbjct: 1 MNFEPHHPLAEMCLRDFAANFNGNKWGHNGPGLVTRVL-RKWCNTGDFAGMTRLRCGGFT 59
Query: 304 ILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEG 363
+LPP AFYP+ W + F+ P+ + WV E+Y VHLWNK S + +EEG
Sbjct: 60 VLPPDAFYPIPWPQWKKFFEEPRLEETMNWVK--------ESYAVHLWNKASKGLKVEEG 111
Query: 364 S--VMGRMISQHCVIC 377
S G + QHC
Sbjct: 112 SRVAYGTLAEQHCPRV 127
|
The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region. Length = 135 |
| >gnl|CDD|218109 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding region containing DXD motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 383 | |||
| KOG1928 | 409 | consensus Alpha-1,4-N-acetylglucosaminyltransferas | 100.0 | |
| PF04572 | 135 | Gb3_synth: Alpha 1,4-glycosyltransferase conserved | 99.96 | |
| PF04488 | 103 | Gly_transf_sug: Glycosyltransferase sugar-binding | 99.8 | |
| PF05704 | 276 | Caps_synth: Capsular polysaccharide synthesis prot | 99.6 | |
| COG3774 | 347 | OCH1 Mannosyltransferase OCH1 and related enzymes | 99.52 | |
| PF12919 | 514 | TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase | 97.7 | |
| PRK15382 | 326 | non-LEE encoded effector protein NleB; Provisional | 93.89 | |
| PRK15383 | 335 | type III secretion system protein; Provisional | 93.72 | |
| cd06429 | 257 | GT8_like_1 GT8_like_1 represents a subfamily of GT | 93.6 | |
| PRK15384 | 336 | type III secretion system protein; Provisional | 93.37 | |
| PRK15171 | 334 | lipopolysaccharide 1,3-galactosyltransferase; Prov | 91.4 | |
| cd02537 | 240 | GT8_Glycogenin Glycogenin belongs the GT 8 family | 90.94 | |
| cd06914 | 278 | GT8_GNT1 GNT1 is a fungal enzyme that belongs to t | 90.76 | |
| cd04194 | 248 | GT8_A4GalT_like A4GalT_like proteins catalyze the | 90.75 | |
| PF01501 | 250 | Glyco_transf_8: Glycosyl transferase family 8; Int | 84.22 | |
| cd00505 | 246 | Glyco_transf_8 Members of glycosyltransferase fami | 82.54 | |
| PLN00176 | 333 | galactinol synthase | 82.25 |
| >KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=495.09 Aligned_cols=288 Identities=50% Similarity=0.923 Sum_probs=259.7
Q ss_pred cceeEEEeccCccceecCCCCCCCCchhHhHHHHHHHHHCCCCeEEEEecCCCCCCCcccccccccCCccEEEECCCHHH
Q 047256 91 ERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSF 170 (383)
Q Consensus 91 ~r~i~F~~t~~~~~~~~~~~~~~~~~~Rq~caIESaar~nP~~~V~ll~~~~~~~~~~~~l~~l~~~~~nV~~~~idl~~ 170 (383)
...+++++.+..|.+ .|..+...|+.||+|||||||++||++||+|+++++++..++.++++++++++++..+.+|++.
T Consensus 119 ~~~~~~~~c~~~~fm-~w~S~~~~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~ 197 (409)
T KOG1928|consen 119 VNSFFRKECSVRFFM-TWISPAESFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPF 197 (409)
T ss_pred cchhhccCCceeEEE-EecccccCCChhhhhhhHHHHhhCCCceEEEEEccccCCCCccccccHhHhhhhhcccccCchh
Confidence 444555553322221 1223668999999999999999999999999999999888999999999999999999999999
Q ss_pred HhcCCCchhhhhhhhcCCCCCCCCCchhHHHHHHHHHHHHHcCcEEEeCCccccccchhhhhhhccccccccCCCcccee
Q 047256 171 LFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLN 250 (383)
Q Consensus 171 lf~~TPl~~w~~~~~~g~~~~~~~~~~a~~SD~lR~~lLyk~GGIYlD~Dv~~lrpld~l~~~~g~e~~~~~~~~~~~l~ 250 (383)
++++||.+.|++.|++|+.+++++++.++.||+.|+++||||||||||||||+||++..+.|.+|... ...+|..+|
T Consensus 198 llk~t~~e~~l~~~k~g~~~~~~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~~---~~~~~~~ln 274 (409)
T KOG1928|consen 198 LLKDTPGETWLERWKDGRLDPGKIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVDP---ATQAWTRLN 274 (409)
T ss_pred hHhhCccccHHHHHHhcccCCCcccchhhHHHHHHHHHHHHhCCEEeeccEEEecccccccccccccc---hhhHHHhhc
Confidence 99999999999999999999999999888999999999999999999999999999999999999322 235678999
Q ss_pred ceeeEecCCCHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHhCCCCCceEECCCCceeccCccccccccccCCCcch
Q 047256 251 NAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQAD 330 (383)
Q Consensus 251 navm~~~pghp~l~~~l~~~~~~yd~~~w~~tGP~llTrvl~~~~~~~~~~i~IlP~~~FyPi~~~~~~~~F~~p~~~~~ 330 (383)
||||+++++|||+.+||++|+.+|||++||++||+++|||++++|+..+.+++|.|+.+|||++|.+++.||..|..+-+
T Consensus 275 navl~F~k~Hpfl~~cl~eF~~tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~ 354 (409)
T KOG1928|consen 275 NAVLIFDKNHPFLLECLREFALTYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWD 354 (409)
T ss_pred CceeecCCCCHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhh
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999998887766
Q ss_pred hHHHHHHhhhccCCcEEEEeecCCcCCcccCCCCHHHHHHHhcCCCcccccc
Q 047256 331 SRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYS 382 (383)
Q Consensus 331 ~~~~~~~l~~l~~~Sy~IHlwn~~~~~~~i~~gS~~~~La~~~CP~~~~~~~ 382 (383)
..|..+++..+.++||++|+||+.+++++|++||++++|+++|||+|++++.
T Consensus 355 ~~~~~~~~~~~~k~Sy~vHlWNk~S~k~~ie~gS~~~~L~s~~Cp~~~~~s~ 406 (409)
T KOG1928|consen 355 RKFVDEETLKMLKNSYAVHLWNKFSRKLKIEEGSAVAKLVSKHCPRCYSATG 406 (409)
T ss_pred hhhhHHHHHHHhccCeEEEeeeccccccccccchHHHHHHHhcCCcccchhh
Confidence 7776777788889999999999999999999999999999999999998754
|
|
| >PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes | Back alignment and domain information |
|---|
| >PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif | Back alignment and domain information |
|---|
| >PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins | Back alignment and domain information |
|---|
| >COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins | Back alignment and domain information |
|---|
| >PRK15382 non-LEE encoded effector protein NleB; Provisional | Back alignment and domain information |
|---|
| >PRK15383 type III secretion system protein; Provisional | Back alignment and domain information |
|---|
| >cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
|---|
| >PRK15384 type III secretion system protein; Provisional | Back alignment and domain information |
|---|
| >PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen | Back alignment and domain information |
|---|
| >cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family | Back alignment and domain information |
|---|
| >cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface | Back alignment and domain information |
|---|
| >PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis | Back alignment and domain information |
|---|
| >PLN00176 galactinol synthase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 383 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 8e-05
Identities = 38/331 (11%), Positives = 94/331 (28%), Gaps = 93/331 (28%)
Query: 52 VLEKFQISNR-PLLSIQEETDKADSGSWNSLK--PPFNVTEDERTAWFRKKLPEFDILKS 108
++ + R P + + ++ D +N + +NV+ + R+ L E L+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLE---LRP 149
Query: 109 -DNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPD 167
N+ G VLG SG + V
Sbjct: 150 AKNVL--IDG--VLG-----------------------SGKTWV---------ALDVCLS 173
Query: 168 LSFLFRNTPAGAWFDEMKSGNKD-PGEIPLAQNLSNLI-RLAVLYKYGGVYLDTDFILLK 225
+ W + N + P + + L L+ ++ + + + +
Sbjct: 174 YKVQCKMDFKIFW---LNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 226 SFEG-LRNSIAAQSIDVVSGNWTRLNNAVLIFD-MNHPLLFKFIEEFAATFDGNKWGHNG 283
S + LR + N +L+ + + + F+ +
Sbjct: 229 SIQAELRRLLK----------SKPYENCLLVLLNVQNAKAWN-------AFNLS------ 265
Query: 284 PYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQAD-SRWVNAKLLQLS 342
+++ + TR L ++ + + ++ ++++ + L
Sbjct: 266 ----CKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 343 REAYGVHLWNKQSNSIAIEEGSVMGRMISQH 373
RE +N + S++ I
Sbjct: 320 REV-------LTTNPRRL---SIIAESIRDG 340
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 383 | |||
| 2vk9_A | 551 | Alpha-toxin; glycosyltransferase; 2.85A {Clostridi | 98.03 | |
| 2bvl_A | 543 | Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2. | 97.68 | |
| 4dmv_A | 556 | Toxin A, TCDA; transferase; 1.50A {Clostridium dif | 96.91 | |
| 3jsz_A | 525 | LGT1, putative uncharacterized protein; glucosyltr | 93.18 | |
| 1g9r_A | 311 | Glycosyl transferase; alpha-beta structure; HET: U | 89.99 | |
| 3u2u_A | 263 | Glycogenin-1, GN-1, GN1; structural genomics, stru | 89.91 | |
| 3tzt_A | 276 | Glycosyl transferase family 8; structural genomics | 89.71 | |
| 1ll2_A | 333 | Glycogenin-1; protein-substrate complex, beta-alph | 89.27 |
| >2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22 | Back alignment and structure |
|---|
Probab=98.03 E-value=6.2e-06 Score=84.84 Aligned_cols=26 Identities=50% Similarity=0.945 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHcCcEEEeCCcc
Q 047256 197 AQNLSNLIRLAVLYKYGGVYLDTDFI 222 (383)
Q Consensus 197 ~a~~SD~lR~~lLyk~GGIYlD~Dv~ 222 (383)
+|..||++|+.+|+++||||+|+|++
T Consensus 263 ~aaASDilR~~il~~~GGiY~D~D~l 288 (551)
T 2vk9_A 263 LAAASDILRIAILKKYGGVYCDLDFL 288 (551)
T ss_dssp HHHHHHHHHHHHHHHHCEEEECTTCB
T ss_pred hHHHHHHHHHHHHHHhCCEEEecccc
Confidence 68999999999999999999999998
|
| >2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A* | Back alignment and structure |
|---|
| >4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A | Back alignment and structure |
|---|
| >3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* | Back alignment and structure |
|---|
| >1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* | Back alignment and structure |
|---|
| >3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A | Back alignment and structure |
|---|
| >3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
| >1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 383 | ||||
| d2bvla1 | 542 | c.68.1.22 (A:1-542) Toxin B {Clostridium difficile | 0.003 |
| >d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]} Length = 542 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Glycosylating toxin catalytic domain-like domain: Toxin B species: Clostridium difficile [TaxId: 1496]
Score = 37.2 bits (86), Expect = 0.003
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 193 EIPLAQNL---SNLIRLAVLYKYGGVYLDTDFI 222
E+ NL S+++R++ L + GG+YLD D +
Sbjct: 258 ELVERWNLAAASDILRISALKEIGGMYLDVDML 290
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 383 | |||
| d2bvla1 | 542 | Toxin B {Clostridium difficile [TaxId: 1496]} | 97.45 | |
| d2vk9a1 | 540 | Alpha-toxin {Clostridium novyi [TaxId: 1542]} | 97.32 | |
| d1ga8a_ | 282 | Galactosyltransferase LgtC {Neisseria meningitidis | 96.19 | |
| d1ll2a_ | 263 | Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: | 95.54 |
| >d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Glycosylating toxin catalytic domain-like domain: Toxin B species: Clostridium difficile [TaxId: 1496]
Probab=97.45 E-value=2.4e-05 Score=78.44 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHcCcEEEeCCccc
Q 047256 197 AQNLSNLIRLAVLYKYGGVYLDTDFIL 223 (383)
Q Consensus 197 ~a~~SD~lR~~lLyk~GGIYlD~Dv~~ 223 (383)
+|..||.+|+.+|++|||||.|+|++.
T Consensus 265 yAAASDilRm~iLke~GGIYtD~D~lP 291 (542)
T d2bvla1 265 LAAASDILRISALKEIGGMYLDVDMLP 291 (542)
T ss_dssp HHHHHHHHHHHHHHHHCEEEECTTCEE
T ss_pred hHhHHHHHHHHHHHHcCCeeeeccccc
Confidence 689999999999999999999999986
|
| >d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]} | Back information, alignment and structure |
|---|
| >d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
| >d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|