Citrus Sinensis ID: 047256


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MFIYRLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISNRPLLSIQEETDKADSGSWNSLKPPFNVTEDERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYSS
ccHHHHHHHHHcHHHHHHHHHHHHHHHHHHccEEEEcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccccEEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHccccEEEEcccHHHHHHccccccHHcccccccccccccccHHHHHHHHHHHHHHHcccEEEEcccEEcccccccccccHHccccccccccccccccEEEcccccHHHHHHHHHHHHHccccccccccccccEEEHHHHcccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHccccccccccc
cccHHHHccccccHHHHHHHHHHHHHHHHcccEEEEcccHHHHHccccccEEEEccccccccccccEEccccccccccccccccccccHHHHHHHHcccccEEEEEEccccHHHccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHcccEEEEcccHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccEEEcccEEEEEcccccccEEEEEcccccccccccccccEEEcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccEEEccccccccccHHHHHHHcccccccccHHHHHHHHHHHHcccEEEEEEEcccccEEccccHHHHHHHHHccccEcccccc
MFIYRLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFqisnrpllsiqeetdkadsgswnslkppfnvtedERTAWFRKklpefdilksdnlteqfhgrevlglesffkahpngCLMILSrtldtpsgyrvlkplldgkfkvaavtpdlsflfrntpagawfdemksgnkdpgeiplaqNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAAtfdgnkwghngpyLVSRVVQRvqtrpgynftilpptafypvnwnrigglfkvpqnqadsRWVNAKLLQLSREAYGVHLwnkqsnsiaieEGSVMGRMISQHCVICDQIYSS
mfiyrllsRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISNRPLLSIQEetdkadsgswnslkppfnvteDERTAWFRKKLpefdilksdnlTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYSS
MFIYRLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISNRPLLSIQEETDKADSGSWNSLKPPFNVTEDERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYSS
*FIYRLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISN*****************************DERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWF****************QNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIY**
****R**SRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAG********************************************D*RTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQI***
MFIYRLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISNRPLLSIQE********SWNSLKPPFNVTEDERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYSS
MFIYRLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISNRPLLSIQEETDKADSGSWNSLKPPFNVTEDERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQI***
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFIYRLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISNRPLLSIQEETDKADSGSWNSLKPPFNVTEDERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
Q67BJ4359 Lactosylceramide 4-alpha- yes no 0.616 0.657 0.329 3e-30
Q9JI93360 Lactosylceramide 4-alpha- yes no 0.616 0.655 0.337 3e-30
P0C8Q4644 Uncharacterized protein A no no 0.657 0.391 0.301 1e-29
Q9NPC4353 Lactosylceramide 4-alpha- yes no 0.610 0.662 0.308 7e-27
Q9N289218 Lactosylceramide 4-alpha- N/A no 0.493 0.866 0.331 2e-26
Q9N291353 Lactosylceramide 4-alpha- yes no 0.610 0.662 0.304 3e-26
Q9N290327 Lactosylceramide 4-alpha- N/A no 0.610 0.715 0.308 3e-26
Q9UNA3340 Alpha-1,4-N-acetylglucosa no no 0.483 0.544 0.25 5e-14
>sp|Q67BJ4|A4GAT_MOUSE Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus GN=A4galt PE=2 SV=1 Back     alignment and function desciption
 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 139/267 (52%), Gaps = 31/267 (11%)

Query: 120 VLGLESFFKAHPNGCLMILSRTL--DTPSGYRVLKPLLDGKFKVAAVTP-DLSFLFRNTP 176
           +  +ES  +AHP   +++L + L  DT +  R L   L   F    + P DL  LF +TP
Sbjct: 101 MCSVESAARAHPESQVVVLMKGLPRDTTAQPRNLGISLLSCFPNVWIRPLDLQELFEDTP 160

Query: 177 AGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAA 236
             AW+ E +    +P ++P+   LS+  R+A+L+K+GG+YLDTDFI+LK+   L N++  
Sbjct: 161 LAAWYSEARH-RWEPYQLPV---LSDASRIALLWKFGGIYLDTDFIVLKNLLNLTNTLGI 216

Query: 237 QSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQR--- 293
           QS  V       LN A L F+  H  L   + +F A ++G  WGH GP L++RV ++   
Sbjct: 217 QSRYV-------LNGAFLAFERKHEFLALCLHDFVANYNGWIWGHQGPQLLTRVFKKWCS 269

Query: 294 ----VQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVH 349
                ++      T LPP AFYP+ W      F+    +        +L QL    Y VH
Sbjct: 270 IQSLEKSHACRGVTALPPEAFYPIPWQNWKKYFEDISPE--------ELTQLLNATYAVH 321

Query: 350 LWNKQSNSIAIEEGS--VMGRMISQHC 374
           +WNK+S    +E  S  ++ ++ +++C
Sbjct: 322 VWNKKSQGTHLEATSKALLAQLHARYC 348




Necessary for the biosynthesis of the Pk antigen of blood histogroup P. Catalyzes the transfer of galactose to lactosylceramide and galactosylceramide. Necessary for the synthesis of the receptor for bacterial verotoxins.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 2EC: 8
>sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus GN=A4galt PE=1 SV=1 Back     alignment and function description
>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1 Back     alignment and function description
>sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens GN=A4GALT PE=2 SV=1 Back     alignment and function description
>sp|Q9N289|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo pygmaeus GN=A4GALT PE=3 SV=1 Back     alignment and function description
>sp|Q9N291|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes GN=A4GALT PE=3 SV=1 Back     alignment and function description
>sp|Q9N290|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1 Back     alignment and function description
>sp|Q9UNA3|A4GCT_HUMAN Alpha-1,4-N-acetylglucosaminyltransferase OS=Homo sapiens GN=A4GNT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
255581057413 lactosylceramide 4-alpha-galactosyltrans 0.832 0.772 0.668 1e-132
225440658416 PREDICTED: uncharacterized protein At4g1 0.997 0.918 0.579 1e-131
297740224 495 unnamed protein product [Vitis vinifera] 0.997 0.771 0.579 1e-131
147853779413 hypothetical protein VITISV_030953 [Viti 0.997 0.924 0.579 1e-130
356494971420 PREDICTED: uncharacterized protein At4g1 0.968 0.883 0.551 1e-126
224140397279 predicted protein [Populus trichocarpa] 0.691 0.949 0.781 1e-122
356523288392 PREDICTED: uncharacterized protein At4g1 0.895 0.875 0.556 1e-118
357505891447 Lactosylceramide 4-alpha-galactosyltrans 0.947 0.812 0.524 1e-117
449483691414 PREDICTED: lactosylceramide 4-alpha-gala 0.963 0.891 0.524 1e-116
449440279414 PREDICTED: lactosylceramide 4-alpha-gala 0.963 0.891 0.524 1e-116
>gi|255581057|ref|XP_002531344.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] gi|223529042|gb|EEF31028.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/347 (66%), Positives = 261/347 (75%), Gaps = 28/347 (8%)

Query: 65  SIQEETDKADSGSWNSLKPPFNVTEDERTAWFRKKLPEFDILKSDNLTEQFHGR------ 118
           S +E  D+      NSL  PFNVTE+ER  WF++KLP  +I KS+ LT QFH R      
Sbjct: 67  STRENIDEVRIDELNSLVAPFNVTEEERIIWFKRKLPGLEIFKSNELTRQFHSRVLEFFD 126

Query: 119 ---------------------EVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDG 157
                                E L ++S FK HPNGCLMILS T+D+  GYR+LKPL+D 
Sbjct: 127 QKCDVQFFMTWISPVSSFGRREFLAMDSLFKVHPNGCLMILSGTMDSIQGYRILKPLVDV 186

Query: 158 KFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYL 217
            FKVAAVTPDL FLF+NTPA  W  EM SGNKDPGEIPL+QNLSNLIRLAV+YKYGG+Y+
Sbjct: 187 GFKVAAVTPDLQFLFKNTPAEIWLQEMMSGNKDPGEIPLSQNLSNLIRLAVIYKYGGIYI 246

Query: 218 DTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGN 277
           DTDFI LKSF+GLRNSI AQSID VS NWTRLNNAVL+FD NHPL++KFIEEFAATFDGN
Sbjct: 247 DTDFIFLKSFKGLRNSIGAQSIDAVSRNWTRLNNAVLVFDKNHPLMYKFIEEFAATFDGN 306

Query: 278 KWGHNGPYLVSRVVQRVQTRPGY-NFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNA 336
           KWGHNGPYLVSRVV RV  RP Y NFT+LPP AFYPV+WNRIGG FK P++QA SRWV A
Sbjct: 307 KWGHNGPYLVSRVVARVAGRPEYNNFTVLPPKAFYPVDWNRIGGFFKKPEDQAASRWVKA 366

Query: 337 KLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYSS 383
           KLLQLS E YG+HLWNKQS  I IEEGSVM  +IS HCVIC+  YSS
Sbjct: 367 KLLQLSGETYGLHLWNKQSCRIRIEEGSVMAGLISDHCVICEYDYSS 413




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440658|ref|XP_002274455.1| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740224|emb|CBI30406.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147853779|emb|CAN83821.1| hypothetical protein VITISV_030953 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356494971|ref|XP_003516354.1| PREDICTED: uncharacterized protein At4g19900-like [Glycine max] Back     alignment and taxonomy information
>gi|224140397|ref|XP_002323569.1| predicted protein [Populus trichocarpa] gi|222868199|gb|EEF05330.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523288|ref|XP_003530272.1| PREDICTED: uncharacterized protein At4g19900-like [Glycine max] Back     alignment and taxonomy information
>gi|357505891|ref|XP_003623234.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] gi|355498249|gb|AES79452.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449483691|ref|XP_004156661.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449440279|ref|XP_004137912.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2150104407 AT5G01250 [Arabidopsis thalian 0.968 0.911 0.506 1.1e-94
TAIR|locus:4010713690380 AT2G38152 [Arabidopsis thalian 0.778 0.784 0.579 1.3e-91
TAIR|locus:2042897405 AT2G38150 [Arabidopsis thalian 0.702 0.664 0.551 1e-90
TAIR|locus:2095264411 AT3G09020 [Arabidopsis thalian 0.704 0.656 0.6 5.9e-89
TAIR|locus:2206006435 AT1G61050 [Arabidopsis thalian 0.691 0.609 0.514 1.1e-78
MGI|MGI:3512453359 A4galt "alpha 1,4-galactosyltr 0.608 0.649 0.337 1.3e-29
RGD|621583360 A4galt "alpha 1,4-galactosyltr 0.608 0.647 0.340 2.1e-29
UNIPROTKB|G3MZ03368 LOC618369 "Uncharacterized pro 0.608 0.633 0.329 1.2e-28
UNIPROTKB|F1PS29411 A4GALT "Uncharacterized protei 0.603 0.562 0.330 5.7e-27
UNIPROTKB|I3L755359 A4GALT "Uncharacterized protei 0.603 0.643 0.330 5.7e-27
TAIR|locus:2150104 AT5G01250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 196/387 (50%), Positives = 251/387 (64%)

Query:     5 RLLSRRVKSAILALVIFIATFFIIYEDTVIISNDSLHSAAGASRAIKVLEKFQISNRPLL 64
             RL      S   A  I   T  ++   T +ISN S+      S  +K+  K  I + PL 
Sbjct:    18 RLNQSGSSSLFTAFAISFVTLIVVTTFT-LISNFSMQPHRDFS-GVKIEIKRVIPHLPLS 75

Query:    65 SIQEETDKADS-GSWNSLKPPFNVTE----DERTAWFRKKLPEF--D------ILKSDNL 111
             S + E +++D       +     V E    D  +  F+K++ EF  D      ++   + 
Sbjct:    76 S-EREGERSDLLKQQTQVNEKLQVIEVFSGDNLSDKFQKRVNEFVGDGCEVNFVMTWISP 134

Query:   112 TEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFL 171
              + F  REVL +ES FK+HP GCLMILS T+D+P GY  LKP +D  +KV AVTPDL FL
Sbjct:   135 ADFFGNREVLAIESVFKSHPYGCLMILSATMDSPQGYATLKPFIDRGYKVLAVTPDLPFL 194

Query:   172 FRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLR 231
              + T    W DE+KSG +DPG+I LAQNLSNL+RLA LYKYGGVYLDTD I+LKSF+GLR
Sbjct:   195 LKGTAGELWLDEIKSGKRDPGKISLAQNLSNLMRLAYLYKYGGVYLDTDMIVLKSFKGLR 254

Query:   232 NSIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVV 291
             N I AQ++D  S NWTRLNNAVLIFD NHPLL KF+EEFA TF+GN WG+NGPYLVSRV 
Sbjct:   255 NVIGAQTLDPSSTNWTRLNNAVLIFDKNHPLLLKFMEEFAKTFNGNIWGYNGPYLVSRVA 314

Query:   292 QRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLW 351
             + V+   GYNFT++ P+ FY VNW  I  LFKVP+ + DS+WV  KLL + R  YG+HLW
Sbjct:   315 RAVEGSSGYNFTVMRPSVFYSVNWLEIKKLFKVPKTEKDSKWVKTKLLHMQRNGYGLHLW 374

Query:   352 NKQSNSIAIEEGSVMGRMISQHCVICD 378
             NK S    IE+GS M +++S+HC+IC+
Sbjct:   375 NKFSRKYEIEQGSAMWKLVSEHCIICE 401




GO:0005794 "Golgi apparatus" evidence=ISM
GO:0005795 "Golgi stack" evidence=IEA
GO:0008378 "galactosyltransferase activity" evidence=IEA
GO:0016740 "transferase activity" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
TAIR|locus:4010713690 AT2G38152 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042897 AT2G38150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095264 AT3G09020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206006 AT1G61050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:3512453 A4galt "alpha 1,4-galactosyltransferase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621583 A4galt "alpha 1,4-galactosyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZ03 LOC618369 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PS29 A4GALT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3L755 A4GALT "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00021487001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (413 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00029535001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (541 aa)
       0.899
GSVIVG00003707001
SubName- Full=Chromosome chr13 scaffold_149, whole genome shotgun sequence; (565 aa)
       0.899
GSVIVG00034182001
RecName- Full=Beta-galactosidase; EC=3.2.1.23; (641 aa)
       0.800
GSVIVG00030925001
SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (133 aa)
       0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
pfam04572135 pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferas 4e-41
pfam0448893 pfam04488, Gly_transf_sug, Glycosyltransferase sug 3e-20
>gnl|CDD|146960 pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferase conserved region Back     alignment and domain information
 Score =  141 bits (357), Expect = 4e-41
 Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 21/136 (15%)

Query: 254 LIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGY----------NFT 303
           + F+ +HPL    + +FAA F+GNKWGHNGP LV+RV+ R     G            FT
Sbjct: 1   MNFEPHHPLAEMCLRDFAANFNGNKWGHNGPGLVTRVL-RKWCNTGDFAGMTRLRCGGFT 59

Query: 304 ILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEG 363
           +LPP AFYP+ W +    F+ P+ +    WV         E+Y VHLWNK S  + +EEG
Sbjct: 60  VLPPDAFYPIPWPQWKKFFEEPRLEETMNWVK--------ESYAVHLWNKASKGLKVEEG 111

Query: 364 S--VMGRMISQHCVIC 377
           S    G +  QHC   
Sbjct: 112 SRVAYGTLAEQHCPRV 127


The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region. Length = 135

>gnl|CDD|218109 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding region containing DXD motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 100.0
PF04572135 Gb3_synth: Alpha 1,4-glycosyltransferase conserved 99.96
PF04488103 Gly_transf_sug: Glycosyltransferase sugar-binding 99.8
PF05704276 Caps_synth: Capsular polysaccharide synthesis prot 99.6
COG3774347 OCH1 Mannosyltransferase OCH1 and related enzymes 99.52
PF12919 514 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase 97.7
PRK15382326 non-LEE encoded effector protein NleB; Provisional 93.89
PRK15383335 type III secretion system protein; Provisional 93.72
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 93.6
PRK15384336 type III secretion system protein; Provisional 93.37
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 91.4
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 90.94
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 90.76
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 90.75
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 84.22
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 82.54
PLN00176333 galactinol synthase 82.25
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=1.4e-64  Score=495.09  Aligned_cols=288  Identities=50%  Similarity=0.923  Sum_probs=259.7

Q ss_pred             cceeEEEeccCccceecCCCCCCCCchhHhHHHHHHHHHCCCCeEEEEecCCCCCCCcccccccccCCccEEEECCCHHH
Q 047256           91 ERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSF  170 (383)
Q Consensus        91 ~r~i~F~~t~~~~~~~~~~~~~~~~~~Rq~caIESaar~nP~~~V~ll~~~~~~~~~~~~l~~l~~~~~nV~~~~idl~~  170 (383)
                      ...+++++.+..|.+ .|..+...|+.||+|||||||++||++||+|+++++++..++.++++++++++++..+.+|++.
T Consensus       119 ~~~~~~~~c~~~~fm-~w~S~~~~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~  197 (409)
T KOG1928|consen  119 VNSFFRKECSVRFFM-TWISPAESFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPF  197 (409)
T ss_pred             cchhhccCCceeEEE-EecccccCCChhhhhhhHHHHhhCCCceEEEEEccccCCCCccccccHhHhhhhhcccccCchh
Confidence            444555553322221 1223668999999999999999999999999999999888999999999999999999999999


Q ss_pred             HhcCCCchhhhhhhhcCCCCCCCCCchhHHHHHHHHHHHHHcCcEEEeCCccccccchhhhhhhccccccccCCCcccee
Q 047256          171 LFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLN  250 (383)
Q Consensus       171 lf~~TPl~~w~~~~~~g~~~~~~~~~~a~~SD~lR~~lLyk~GGIYlD~Dv~~lrpld~l~~~~g~e~~~~~~~~~~~l~  250 (383)
                      ++++||.+.|++.|++|+.+++++++.++.||+.|+++||||||||||||||+||++..+.|.+|...   ...+|..+|
T Consensus       198 llk~t~~e~~l~~~k~g~~~~~~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~~---~~~~~~~ln  274 (409)
T KOG1928|consen  198 LLKDTPGETWLERWKDGRLDPGKIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVDP---ATQAWTRLN  274 (409)
T ss_pred             hHhhCccccHHHHHHhcccCCCcccchhhHHHHHHHHHHHHhCCEEeeccEEEecccccccccccccc---hhhHHHhhc
Confidence            99999999999999999999999999888999999999999999999999999999999999999322   235678999


Q ss_pred             ceeeEecCCCHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHhCCCCCceEECCCCceeccCccccccccccCCCcch
Q 047256          251 NAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQAD  330 (383)
Q Consensus       251 navm~~~pghp~l~~~l~~~~~~yd~~~w~~tGP~llTrvl~~~~~~~~~~i~IlP~~~FyPi~~~~~~~~F~~p~~~~~  330 (383)
                      ||||+++++|||+.+||++|+.+|||++||++||+++|||++++|+..+.+++|.|+.+|||++|.+++.||..|..+-+
T Consensus       275 navl~F~k~Hpfl~~cl~eF~~tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~  354 (409)
T KOG1928|consen  275 NAVLIFDKNHPFLLECLREFALTYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWD  354 (409)
T ss_pred             CceeecCCCCHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhh
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999998887766


Q ss_pred             hHHHHHHhhhccCCcEEEEeecCCcCCcccCCCCHHHHHHHhcCCCcccccc
Q 047256          331 SRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYS  382 (383)
Q Consensus       331 ~~~~~~~l~~l~~~Sy~IHlwn~~~~~~~i~~gS~~~~La~~~CP~~~~~~~  382 (383)
                      ..|..+++..+.++||++|+||+.+++++|++||++++|+++|||+|++++.
T Consensus       355 ~~~~~~~~~~~~k~Sy~vHlWNk~S~k~~ie~gS~~~~L~s~~Cp~~~~~s~  406 (409)
T KOG1928|consen  355 RKFVDEETLKMLKNSYAVHLWNKFSRKLKIEEGSAVAKLVSKHCPRCYSATG  406 (409)
T ss_pred             hhhhHHHHHHHhccCeEEEeeeccccccccccchHHHHHHHhcCCcccchhh
Confidence            7776777788889999999999999999999999999999999999998754



>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes Back     alignment and domain information
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif Back     alignment and domain information
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins Back     alignment and domain information
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins Back     alignment and domain information
>PRK15382 non-LEE encoded effector protein NleB; Provisional Back     alignment and domain information
>PRK15383 type III secretion system protein; Provisional Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15384 type III secretion system protein; Provisional Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 38/331 (11%), Positives = 94/331 (28%), Gaps = 93/331 (28%)

Query: 52  VLEKFQISNR-PLLSIQEETDKADSGSWNSLK--PPFNVTEDERTAWFRKKLPEFDILKS 108
           ++   +   R P +  +   ++ D   +N  +    +NV+  +     R+ L E   L+ 
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLE---LRP 149

Query: 109 -DNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPD 167
             N+     G  VLG                       SG   +            V   
Sbjct: 150 AKNVL--IDG--VLG-----------------------SGKTWV---------ALDVCLS 173

Query: 168 LSFLFRNTPAGAWFDEMKSGNKD-PGEIPLAQNLSNLI-RLAVLYKYGGVYLDTDFILLK 225
                +      W   +   N + P  +   + L  L+ ++   +     +     + + 
Sbjct: 174 YKVQCKMDFKIFW---LNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 226 SFEG-LRNSIAAQSIDVVSGNWTRLNNAVLIFD-MNHPLLFKFIEEFAATFDGNKWGHNG 283
           S +  LR  +                N +L+   + +   +         F+ +      
Sbjct: 229 SIQAELRRLLK----------SKPYENCLLVLLNVQNAKAWN-------AFNLS------ 265

Query: 284 PYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQAD-SRWVNAKLLQLS 342
                +++  + TR       L       ++ +         + ++   ++++ +   L 
Sbjct: 266 ----CKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 343 REAYGVHLWNKQSNSIAIEEGSVMGRMISQH 373
           RE          +N   +   S++   I   
Sbjct: 320 REV-------LTTNPRRL---SIIAESIRDG 340


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
2vk9_A 551 Alpha-toxin; glycosyltransferase; 2.85A {Clostridi 98.03
2bvl_A543 Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2. 97.68
4dmv_A556 Toxin A, TCDA; transferase; 1.50A {Clostridium dif 96.91
3jsz_A 525 LGT1, putative uncharacterized protein; glucosyltr 93.18
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 89.99
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 89.91
3tzt_A276 Glycosyl transferase family 8; structural genomics 89.71
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 89.27
>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22 Back     alignment and structure
Probab=98.03  E-value=6.2e-06  Score=84.84  Aligned_cols=26  Identities=50%  Similarity=0.945  Sum_probs=25.2

Q ss_pred             hhHHHHHHHHHHHHHcCcEEEeCCcc
Q 047256          197 AQNLSNLIRLAVLYKYGGVYLDTDFI  222 (383)
Q Consensus       197 ~a~~SD~lR~~lLyk~GGIYlD~Dv~  222 (383)
                      +|..||++|+.+|+++||||+|+|++
T Consensus       263 ~aaASDilR~~il~~~GGiY~D~D~l  288 (551)
T 2vk9_A          263 LAAASDILRIAILKKYGGVYCDLDFL  288 (551)
T ss_dssp             HHHHHHHHHHHHHHHHCEEEECTTCB
T ss_pred             hHHHHHHHHHHHHHHhCCEEEecccc
Confidence            68999999999999999999999998



>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A* Back     alignment and structure
>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A Back     alignment and structure
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d2bvla1542 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile 0.003
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]} Length = 542 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycosylating toxin catalytic domain-like
domain: Toxin B
species: Clostridium difficile [TaxId: 1496]
 Score = 37.2 bits (86), Expect = 0.003
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 193 EIPLAQNL---SNLIRLAVLYKYGGVYLDTDFI 222
           E+    NL   S+++R++ L + GG+YLD D +
Sbjct: 258 ELVERWNLAAASDILRISALKEIGGMYLDVDML 290


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d2bvla1542 Toxin B {Clostridium difficile [TaxId: 1496]} 97.45
d2vk9a1540 Alpha-toxin {Clostridium novyi [TaxId: 1542]} 97.32
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 96.19
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 95.54
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycosylating toxin catalytic domain-like
domain: Toxin B
species: Clostridium difficile [TaxId: 1496]
Probab=97.45  E-value=2.4e-05  Score=78.44  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHHcCcEEEeCCccc
Q 047256          197 AQNLSNLIRLAVLYKYGGVYLDTDFIL  223 (383)
Q Consensus       197 ~a~~SD~lR~~lLyk~GGIYlD~Dv~~  223 (383)
                      +|..||.+|+.+|++|||||.|+|++.
T Consensus       265 yAAASDilRm~iLke~GGIYtD~D~lP  291 (542)
T d2bvla1         265 LAAASDILRISALKEIGGMYLDVDMLP  291 (542)
T ss_dssp             HHHHHHHHHHHHHHHHCEEEECTTCEE
T ss_pred             hHhHHHHHHHHHHHHcCCeeeeccccc
Confidence            689999999999999999999999986



>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]} Back     information, alignment and structure
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure