Citrus Sinensis ID: 047264

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MGEREREREMKMLSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRRR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHccccccccHHHccc
Coil and Loop (DISEMBL)
MGEREREREMKMLSSNCKLLLRLSLCVSLLMIICIRcsssrtlqgheydgefsivgyspeeltsTDKLVELFESWMlkhgksyesteEKLHRLEIFKDNLKHIDARNRELQITSsywlglnefsdmsheEFKNkyltglkpdddefrrr
Flexible Loop (DISEMBL)
MGEREREREMKMLSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHgksyesteekLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFknkyltglkpdddefrrr
Low Complexity Region (SEG)
MGererereMKMlssncklllrlslcvsllMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRRR
Disordered region (IsUnstruct)
***************NCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSD************************
Disordered Region (DISOPRED)
***************NCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKY**************
Disordered Region (DISEMBL)
***********MLSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRRR
Disordered Region (DISPRO)
***********MLSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLT************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGEREREREMKMLSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
O65493	355	Xylem cysteine proteinase	no	no	0.771	0.323	0.515	4e-31
P05994	348	Papaya proteinase 4 OS=Ca	N/A	no	0.624	0.267	0.578	4e-28
P00784	345	Papain OS=Carica papaya P	N/A	no	0.724	0.313	0.492	4e-27
P10056	348	Caricain OS=Carica papaya	N/A	no	0.751	0.321	0.469	1e-26
Q9LM66	356	Xylem cysteine proteinase	no	no	0.590	0.247	0.630	6e-26
P14080	352	Chymopapain OS=Carica pap	N/A	no	0.791	0.335	0.440	1e-23
P43297	462	Cysteine proteinase RD21a	no	no	0.630	0.203	0.377	2e-11
P00785	380	Actinidain OS=Actinidia c	N/A	no	0.476	0.186	0.438	2e-11
A5HII1	380	Actinidain OS=Actinidia d	N/A	no	0.476	0.186	0.438	2e-11
P80884	345	Ananain OS=Ananas comosus	N/A	no	0.483	0.208	0.413	3e-11

>sp|O65493|XCP1_ARATH Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 92/130 (70%), Gaps = 15/130 (11%)

Query: 20  LLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKH 79
           L + SL V++     + C+ +R         +FSIVGY+PE LT+TDKL+ELFESWM +H
Sbjct: 8   LSKFSLLVAISASALLCCAFAR---------DFSIVGYTPEHLTNTDKLLELFESWMSEH 58

Query: 80  GKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 139
            K+Y+S EEK+HR E+F++NL HID RN E+   +SYWLGLNEF+D++HEEFK +YL   
Sbjct: 59  SKAYKSVEEKVHRFEVFRENLMHIDQRNNEI---NSYWLGLNEFADLTHEEFKGRYLGLA 115

Query: 140 KPDDDEFRRR 149
           KP   +F R+
Sbjct: 116 KP---QFSRK 122

Probable thiol protease.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|P05994|PAPA4_CARPA Papaya proteinase 4 OS=Carica papaya PE=1 SV=3

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 81/102 (79%), Gaps = 9/102 (8%)

Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           +FSIVGYS ++LTST++L++LF SWMLKH K+Y++ +EKL+R EIFKDNLK+ID RN+  
Sbjct: 27  DFSIVGYSQDDLTSTERLIQLFNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNK-- 84

Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGL------KPDDDEF 146
            + + YWLGLNEFSD+S++EFK KY+  L      +P D+EF
Sbjct: 85  -MINGYWLGLNEFSDLSNDEFKEKYVGSLPEDYTNQPYDEEF 125

Thiol protease with a substrate specificity very different from the other thiol proteases.

Carica papaya (taxid: 3649)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 2

EC: 5

>sp|P00784|PAPA1_CARPA Papain OS=Carica papaya PE=1 SV=1

 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 87/126 (69%), Gaps = 18/126 (14%)

Query: 10  MKMLSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLV 69
           M M+ S  KLL  +++C+ + M +                G+FSIVGYS  +LTST++L+
Sbjct: 1   MAMIPSISKLLF-VAICLFVYMGLSF--------------GDFSIVGYSQNDLTSTERLI 45

Query: 70  ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHE 129
           +LFESWMLKH K Y++ +EK++R EIFKDNLK+ID  N++    +SYWLGLN F+DMS++
Sbjct: 46  QLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK---NNSYWLGLNVFADMSND 102

Query: 130 EFKNKY 135
           EFK KY
Sbjct: 103 EFKEKY 108

Carica papaya (taxid: 3649)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 2

>sp|P10056|PAPA3_CARPA Caricain OS=Carica papaya PE=1 SV=2

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 18/130 (13%)

Query: 10  MKMLSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLV 69
           M M+ S  KLL  +++C+ + M +                G+FSIVGYS ++LTST++L+
Sbjct: 1   MAMIPSISKLLF-VAICLFVHMSVSF--------------GDFSIVGYSQDDLTSTERLI 45

Query: 70  ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHE 129
           +LF SWML H K YE+ +EKL+R EIFKDNL +ID  N++    +SYWLGLNEF+D+S++
Sbjct: 46  QLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK---NNSYWLGLNEFADLSND 102

Query: 130 EFKNKYLTGL 139
           EF  KY+  L
Sbjct: 103 EFNEKYVGSL 112

Carica papaya (taxid: 3649)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q9LM66|XCP2_ARATH Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2

 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 72/92 (78%), Gaps = 4/92 (4%)

Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           ++SIVGYSPE+L S DKL+ELFE+W+    K+YE+ EEK  R E+FKDNLKHID  N++ 
Sbjct: 30  DYSIVGYSPEDLESHDKLIELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKG 89

Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPD 142
           +   SYWLGLNEF+D+SHEEFK  YL GLK D
Sbjct: 90  K---SYWLGLNEFADLSHEEFKKMYL-GLKTD 117

Probable thiol protease.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P14080|PAPA2_CARPA Chymopapain OS=Carica papaya PE=1 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 93/143 (65%), Gaps = 25/143 (17%)

Query: 10  MKMLSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLV 69
           M  +SS  K++  L+ C    +II +  SS+          +F  VGYS ++LTS ++L+
Sbjct: 1   MATMSSISKIIF-LATC----LIIHMGLSSA----------DFYTVGYSQDDLTSIERLI 45

Query: 70  ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHE 129
           +LF+SWMLKH K YES +EK++R EIF+DNL +ID  N++    +SYWLGLN F+D+S++
Sbjct: 46  QLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKK---NNSYWLGLNGFADLSND 102

Query: 130 EFKNKYL-------TGLKPDDDE 145
           EFK KY+       TGL+  D+E
Sbjct: 103 EFKKKYVGFVAEDFTGLEHFDNE 125

Carica papaya (taxid: 3649)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

>sp|P43297|RD21A_ARATH Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 12/106 (11%)

Query: 51  EFSIVGYSPEELTSTD------KLVELFESWMLKHGK--SYESTEEKLHRLEIFKDNLKH 102
           + SI+ Y  +   ST       +++ ++E+W++KHGK  S  S  EK  R EIFKDNL+ 
Sbjct: 23  DMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRF 82

Query: 103 IDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRR 148
           +D  N +     SY LGL  F+D++++E+++KYL G K +    RR
Sbjct: 83  VDEHNEK---NLSYRLGLTRFADLTNDEYRSKYL-GAKMEKKGERR 124

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P00785|ACTN_ACTCH Actinidain OS=Actinidia chinensis PE=1 SV=4

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 2/73 (2%)

Query: 64  STDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEF 123
           + D++  ++ESW++K+GKSY S  E   R EIFK+ L+ ID  N +     SY +GLN+F
Sbjct: 34  TNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTN--RSYKVGLNQF 91

Query: 124 SDMSHEEFKNKYL 136
           +D++ EEF++ YL
Sbjct: 92  ADLTDEEFRSTYL 104

Cysteine protease responsible for the cleavage of kiwellin into kissper and KiTH.

Actinidia chinensis (taxid: 3625)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 4

>sp|A5HII1|ACTN_ACTDE Actinidain OS=Actinidia deliciosa PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 2/73 (2%)

Query: 64  STDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEF 123
           + D++  ++ESW++K+GKSY S  E   R EIFK+ L+ ID  N +     SY +GLN+F
Sbjct: 34  TNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTN--RSYKVGLNQF 91

Query: 124 SDMSHEEFKNKYL 136
           +D++ EEF++ YL
Sbjct: 92  ADLTDEEFRSTYL 104

Cysteine protease responsible for the cleavage of kiwellin into kissper and KiTH.

Actinidia deliciosa (taxid: 3627)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 4

>sp|P80884|ANAN_ANACO Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 53/75 (70%), Gaps = 3/75 (4%)

Query: 65  TDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFS 124
           +D +++ FE WM ++G+ Y+  +EK+ R +IFK+N+ HI+  N   +  +SY LG+N+F+
Sbjct: 30  SDPMMKQFEEWMAEYGRVYKDNDEKMLRFQIFKNNVNHIETFNN--RNGNSYTLGINQFT 87

Query: 125 DMSHEEFKNKYLTGL 139
           DM++ EF  +Y TGL
Sbjct: 88  DMTNNEFVAQY-TGL 101

Ananas comosus (taxid: 4615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 3

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
224131910	349	predicted protein [Populus trichocarpa]	0.617	0.263	0.696	5e-31
356508487	349	PREDICTED: xylem cysteine proteinase 2-l	0.744	0.318	0.561	5e-31
225428328	707	PREDICTED: cysteine proteinase-like [Vit	0.637	0.134	0.622	2e-30
356517184	350	PREDICTED: xylem cysteine proteinase 2-l	0.765	0.325	0.573	4e-30
359491865	351	PREDICTED: xylem cysteine proteinase 1-l	0.577	0.245	0.733	9e-30
255635584	345	unknown [Glycine max]	0.704	0.304	0.628	1e-29
356508490	349	PREDICTED: xylem cysteine proteinase 2-l	0.704	0.300	0.628	1e-29
42573181	288	Xylem cysteine proteinase 1 [Arabidopsis	0.771	0.399	0.515	2e-29
18418684	355	Xylem cysteine proteinase 1 [Arabidopsis	0.771	0.323	0.515	2e-29
37780039	351	cysteine protease 14 [Trifolium repens]	0.590	0.250	0.717	3e-29

>gi|224131910|ref|XP_002328138.1| predicted protein [Populus trichocarpa] gi|222837653|gb|EEE76018.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 82/99 (82%), Gaps = 7/99 (7%)

Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           +FSIVGYSPE LTS DKLVELFESW+  HGK+Y S EEKLHR E+FK+NLKHID RN+E+
Sbjct: 26  DFSIVGYSPEHLTSVDKLVELFESWISGHGKAYNSLEEKLHRFEVFKENLKHIDQRNKEV 85

Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRRR 149
              +SYWLGLNEF+D+SHEEFK+K+L GL P   EF R+
Sbjct: 86  ---TSYWLGLNEFADLSHEEFKSKFL-GLYP---EFPRK 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508487|ref|XP_003522988.1| PREDICTED: xylem cysteine proteinase 2-like [Glycine max]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 89/130 (68%), Gaps = 19/130 (14%)

Query: 13  LSSNCKLLLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELF 72
            SS+  L L  S C+   + +                G+FSIVGYS E+L S DKL+ELF
Sbjct: 3   FSSSKALFLACSFCLFASLAVA---------------GDFSIVGYSSEDLKSMDKLIELF 47

Query: 73  ESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFK 132
           ESWM +HGK Y+S EEKLHR +IFKDNLKHID RN+   + S+YWLGLNEF+D+SH+EFK
Sbjct: 48  ESWMSRHGKIYQSIEEKLHRFDIFKDNLKHIDERNK---VVSNYWLGLNEFADLSHQEFK 104

Query: 133 NKYLTGLKPD 142
           NKYL GLK D
Sbjct: 105 NKYL-GLKVD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428328|ref|XP_002279940.1| PREDICTED: cysteine proteinase-like [Vitis vinifera]

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/106 (62%), Positives = 81/106 (76%), Gaps = 11/106 (10%)

Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           +FSIVGYSPE+LT  DKL+  FESW+ KHGK Y+S EEKLHR E+F++NL HID RN+E+
Sbjct: 383 DFSIVGYSPEDLTCIDKLIARFESWVSKHGKVYKSMEEKLHRFEVFRENLNHIDERNKEV 442

Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPD-------DDEFRRR 149
              SSYWLGLNEF+D+SHEEFK+KYL GL+ +         EFR R
Sbjct: 443 ---SSYWLGLNEFADLSHEEFKSKYL-GLRAEFPRSRDYSGEFRYR 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517184|ref|XP_003527269.1| PREDICTED: xylem cysteine proteinase 2-like [Glycine max]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 87/122 (71%), Gaps = 8/122 (6%)

Query: 21  LRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHG 80
           +  S   +L ++ C  C          +  +FSIVGYS E+L S DKL+ELFESW+ +HG
Sbjct: 1   MAFSTSKALRVLACSFC----LFASFTFGRDFSIVGYSSEDLKSMDKLIELFESWISRHG 56

Query: 81  KSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK 140
           K Y+S EEKLHR EIFKDNLKHID RN+   + S+YWLGLNEF+D+SH+EFKNKYL GLK
Sbjct: 57  KIYQSIEEKLHRFEIFKDNLKHIDERNK---VVSNYWLGLNEFADLSHQEFKNKYL-GLK 112

Query: 141 PD 142
            D
Sbjct: 113 VD 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491865|ref|XP_002273243.2| PREDICTED: xylem cysteine proteinase 1-like [Vitis vinifera]

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 77/90 (85%), Gaps = 4/90 (4%)

Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           +FSIVGYSP++LTS DKL +LFESWM KHGKSY S EEKLHR E+F+DNLKHID  N+++
Sbjct: 27  DFSIVGYSPDDLTSMDKLTDLFESWMSKHGKSYRSFEEKLHRFEVFQDNLKHIDETNKKV 86

Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLK 140
              SSYWLGLNEF+D+SHEEFK KYL GLK
Sbjct: 87  ---SSYWLGLNEFADLSHEEFKRKYL-GLK 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635584|gb|ACU18142.1| unknown [Glycine max]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 84/113 (74%), Gaps = 8/113 (7%)

Query: 30  LMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEK 89
           L++ C  C  +    G +    FSIVGYS E+L S DKL+ELFESWM KHGK Y+S EEK
Sbjct: 9   LVLACSFCLFASLAFGRD----FSIVGYSSEDLKSMDKLIELFESWMSKHGKIYQSIEEK 64

Query: 90  LHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPD 142
           L R EIFKDNLKHID RN+   + S+YWLGLNEF+D+SH+EFKNKYL GLK D
Sbjct: 65  LLRFEIFKDNLKHIDERNK---VVSNYWLGLNEFADLSHQEFKNKYL-GLKVD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508490|ref|XP_003522989.1| PREDICTED: xylem cysteine proteinase 2-like [Glycine max]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 84/113 (74%), Gaps = 8/113 (7%)

Query: 30  LMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEK 89
           L++ C  C  +    G +    FSIVGYS E+L S DKL+ELFESWM KHGK Y+S EEK
Sbjct: 9   LVLACSFCLFASLAFGRD----FSIVGYSSEDLKSMDKLIELFESWMSKHGKIYQSIEEK 64

Query: 90  LHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPD 142
           L R EIFKDNLKHID RN+   + S+YWLGLNEF+D+SH+EFKNKYL GLK D
Sbjct: 65  LLRFEIFKDNLKHIDERNK---VVSNYWLGLNEFADLSHQEFKNKYL-GLKVD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573181|ref|NP_974687.1| Xylem cysteine proteinase 1 [Arabidopsis thaliana] gi|332661102|gb|AEE86502.1| Xylem cysteine proteinase 1 [Arabidopsis thaliana]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 92/130 (70%), Gaps = 15/130 (11%)

Query: 20  LLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKH 79
           L + SL V++     + C+ +R         +FSIVGY+PE LT+TDKL+ELFESWM +H
Sbjct: 8   LSKFSLLVAISASALLCCAFAR---------DFSIVGYTPEHLTNTDKLLELFESWMSEH 58

Query: 80  GKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 139
            K+Y+S EEK+HR E+F++NL HID RN E+   +SYWLGLNEF+D++HEEFK +YL   
Sbjct: 59  SKAYKSVEEKVHRFEVFRENLMHIDQRNNEI---NSYWLGLNEFADLTHEEFKGRYLGLA 115

Query: 140 KPDDDEFRRR 149
           KP   +F R+
Sbjct: 116 KP---QFSRK 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418684|ref|NP_567983.1| Xylem cysteine proteinase 1 [Arabidopsis thaliana] gi|71153408|sp|O65493.1|XCP1_ARATH RecName: Full=Xylem cysteine proteinase 1; Short=AtXCP1; Flags: Precursor gi|6708181|gb|AAF25831.1|AF191027_1 papain-type cysteine endopeptidase XCP1 [Arabidopsis thaliana] gi|3080415|emb|CAA18734.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|7270487|emb|CAB80252.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|26449881|dbj|BAC42063.1| putative cysteine proteinase [Arabidopsis thaliana] gi|28827736|gb|AAO50712.1| unknown protein [Arabidopsis thaliana] gi|332661101|gb|AEE86501.1| Xylem cysteine proteinase 1 [Arabidopsis thaliana]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 92/130 (70%), Gaps = 15/130 (11%)

Query: 20  LLRLSLCVSLLMIICIRCSSSRTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKH 79
           L + SL V++     + C+ +R         +FSIVGY+PE LT+TDKL+ELFESWM +H
Sbjct: 8   LSKFSLLVAISASALLCCAFAR---------DFSIVGYTPEHLTNTDKLLELFESWMSEH 58

Query: 80  GKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 139
            K+Y+S EEK+HR E+F++NL HID RN E+   +SYWLGLNEF+D++HEEFK +YL   
Sbjct: 59  SKAYKSVEEKVHRFEVFRENLMHIDQRNNEI---NSYWLGLNEFADLTHEEFKGRYLGLA 115

Query: 140 KPDDDEFRRR 149
           KP   +F R+
Sbjct: 116 KP---QFSRK 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37780039|gb|AAP32192.1| cysteine protease 14 [Trifolium repens]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 77/92 (83%), Gaps = 4/92 (4%)

Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           +FSIVGYS E+L S DKL+ELFESWM +HGK YE+ EEKL R E+FKDNLKHID RN+  
Sbjct: 26  DFSIVGYSSEDLKSMDKLIELFESWMSRHGKIYETIEEKLLRFEVFKDNLKHIDDRNK-- 83

Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPD 142
            I S+YWLGLNEF+D+SH+EFKNKYL GLK D
Sbjct: 84  -IVSNYWLGLNEFADLSHQEFKNKYL-GLKVD 113

Source: Trifolium repens

Species: Trifolium repens

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2122113	355	XCP1 "xylem cysteine peptidase	0.624	0.261	0.616	4.9e-30
TAIR|locus:2030427	356	XCP2 "xylem cysteine peptidase	0.590	0.247	0.630	9.4e-27
TAIR|locus:2825832	462	RD21A "responsive to dehydrati	0.630	0.203	0.377	4.9e-12
TAIR|locus:2024362	437	XBCP3 "xylem bark cysteine pep	0.496	0.169	0.454	1.2e-11
TAIR|locus:2128253	371	AT4G11320 [Arabidopsis thalian	0.389	0.156	0.557	1.4e-11
TAIR|locus:2167821	463	RD21B "esponsive to dehydratio	0.624	0.200	0.392	1.7e-11
TAIR|locus:2128243	364	AT4G11310 [Arabidopsis thalian	0.530	0.217	0.482	2.8e-11
UNIPROTKB|Q3T0I2	335	CTSH "Pro-cathepsin H" [Bos ta	0.409	0.182	0.492	3.7e-11
TAIR|locus:2097104	376	AT3G43960 [Arabidopsis thalian	0.516	0.204	0.392	6.4e-11
UNIPROTKB|F1RKR7	197	CTSH "Cathepsin H light chain"	0.503	0.380	0.444	7.4e-11

TAIR|locus:2122113 XCP1 "xylem cysteine peptidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 61/99 (61%), Positives = 80/99 (80%)

Query:    51 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
             +FSIVGY+PE LT+TDKL+ELFESWM +H K+Y+S EEK+HR E+F++NL HID RN E+
Sbjct:    30 DFSIVGYTPEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEI 89

Query:   111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRRR 149
                +SYWLGLNEF+D++HEEFK +YL   KP   +F R+
Sbjct:    90 ---NSYWLGLNEFADLTHEEFKGRYLGLAKP---QFSRK 122

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2030427 XCP2 "xylem cysteine peptidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 58/92 (63%), Positives = 71/92 (77%)

Query:    51 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
             ++SIVGYSPE+L S DKL+ELFE+W+    K+YE+ EEK  R E+FKDNLKHID  N++ 
Sbjct:    30 DYSIVGYSPEDLESHDKLIELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKK- 88

Query:   111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPD 142
                 SYWLGLNEF+D+SHEEFK  YL GLK D
Sbjct:    89 --GKSYWLGLNEFADLSHEEFKKMYL-GLKTD 117

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0008233 "peptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2825832 RD21A "responsive to dehydration 21A" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 40/106 (37%), Positives = 63/106 (59%)

Query:    51 EFSIVGYSPEELTSTD------KLVELFESWMLKHGK--SYESTEEKLHRLEIFKDNLKH 102
             + SI+ Y  +   ST       +++ ++E+W++KHGK  S  S  EK  R EIFKDNL+ 
Sbjct:    23 DMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRF 82

Query:   103 IDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRR 148
             +D  N +     SY LGL  F+D++++E+++KYL G K +    RR
Sbjct:    83 VDEHNEK---NLSYRLGLTRFADLTNDEYRSKYL-GAKMEKKGERR 124

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;IMP

GO:0008234 "cysteine-type peptidase activity" evidence=ISS;IDA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009414 "response to water deprivation" evidence=TAS

TAIR|locus:2024362 XBCP3 "xylem bark cysteine peptidase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 35/77 (45%), Positives = 49/77 (63%)

Query:    63 TSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNE 122
             +S+D + ELF+ W  KHGK+Y S EE+  R++IFKDN   +   N  L   ++Y L LN 
Sbjct:    23 SSSDDISELFDDWCQKHGKTYGSEEERQQRIQIFKDNHDFVTQHN--LITNATYSLSLNA 80

Query:   123 FSDMSHEEFKNKYLTGL 139
             F+D++H EFK   L GL
Sbjct:    81 FADLTHHEFKASRL-GL 96

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2128253 AT4G11320 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/61 (55%), Positives = 42/61 (68%)

Query:    71 LFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEE 130
             +FESWM+KHGK Y+S  EK  RL IF+DNL+ I  RN E     SY LGLN F+D+S  E
Sbjct:    55 MFESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAE---NLSYRLGLNRFADLSLHE 111

Query:   131 F 131
             +
Sbjct:   112 Y 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

TAIR|locus:2167821 RD21B "esponsive to dehydration 21B" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 42/107 (39%), Positives = 61/107 (57%)

Query:    45 GHEYDGEFSIVGYSPE-----ELTSTDKLVE-LFESWMLKHGKSYESTE----EKLHRLE 94
             G  Y  + SI+ Y        E + +D  VE ++E+WM++HGK   +      EK  R E
Sbjct:    17 GVSYAMDMSIISYDENHHITTETSRSDSEVERIYEAWMVEHGKKKMNQNGLGAEKDQRFE 76

Query:    95 IFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKP 141
             IFKDNL+ ID  N +     SY LGL  F+D+++EE+++ YL G KP
Sbjct:    77 IFKDNLRFIDEHNTK---NLSYKLGLTRFADLTNEEYRSMYL-GAKP 119

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2128243 AT4G11310 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 41/85 (48%), Positives = 50/85 (58%)

Query:    51 EFSIVGYSPEE-LTST-DKLVEL-FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARN 107
             + S+V Y     L S  D    L FESWM+KHGK Y S  EK  RL IF+DNL+ I+ RN
Sbjct:    25 DMSVVSYDDNNRLHSVFDAEASLIFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRN 84

Query:   108 RELQITSSYWLGLNEFSDMSHEEFK 132
              E     SY LGL  F+D+S  E+K
Sbjct:    85 AE---NLSYRLGLTGFADLSLHEYK 106

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

UNIPROTKB|Q3T0I2 CTSH "Pro-cathepsin H" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 32/65 (49%), Positives = 44/65 (67%)

Query:    72 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEF 131
             F+SWM++H K Y S+EE  HRL+ F  NL+ I+A N       ++ +GLN+FSDMS +E 
Sbjct:    35 FQSWMVQHQKKY-SSEEYYHRLQAFASNLREINAHNAR---NHTFKMGLNQFSDMSFDEL 90

Query:   132 KNKYL 136
             K KYL
Sbjct:    91 KRKYL 95

GO:0031638 "zymogen activation" evidence=ISS

GO:0031648 "protein destabilization" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0010815 "bradykinin catabolic process" evidence=ISS

GO:0043129 "surfactant homeostasis" evidence=ISS

GO:0010813 "neuropeptide catabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0001656 "metanephros development" evidence=ISS

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0001913 "T cell mediated cytotoxicity" evidence=ISS

GO:0016505 "apoptotic protease activator activity" evidence=ISS

GO:0010952 "positive regulation of peptidase activity" evidence=ISS

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=ISS

GO:0002764 "immune response-regulating signaling pathway" evidence=ISS

GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0070324 "thyroid hormone binding" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=ISS

GO:0097208 "alveolar lamellar body" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

GO:0004177 "aminopeptidase activity" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0032526 "response to retinoic acid" evidence=ISS

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

TAIR|locus:2097104 AT3G43960 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 31/79 (39%), Positives = 50/79 (63%)

Query:    60 EELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLG 119
             E   +  +++ ++E W++++GK+Y    EK  R +IFKDNLK I+  N +     SY  G
Sbjct:    29 ESQRNEGEVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPN--RSYERG 86

Query:   120 LNEFSDMSHEEFKNKYLTG 138
             LN+FSD++ +EF+  YL G
Sbjct:    87 LNKFSDLTADEFQASYLGG 105

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=IMP

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|F1RKR7 CTSH "Cathepsin H light chain" [Sus scrofa (taxid:9823)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 36/81 (44%), Positives = 52/81 (64%)

Query:    56 GYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSS 115
             G S   ++S +KL   F+SWM++H K Y S EE  HRL++F  N + I+A N       +
Sbjct:    21 GASNLAVSSFEKLH--FKSWMVQHQKKY-SLEEYHHRLQVFVSNWRKINAHNAG---NHT 74

Query:   116 YWLGLNEFSDMSHEEFKNKYL 136
             + LGLN+FSDMS +E ++KYL
Sbjct:    75 FKLGLNQFSDMSFDEIRHKYL 95

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_scaffold_66000095	hypothetical protein (349 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	MYB020	hypothetical protein (109 aa)							•		0.702
	gw1.III.864.1	annotation not avaliable (313 aa)							•		0.702
	NAC105	NAC domain protein, IPR003441 (310 aa)							•		0.702
	HB5	SubName- Full=Class III HD-Zip protein 5; (851 aa)							•		0.510
	HB6	SubName- Full=Class III HD-Zip protein 6; (837 aa)							•		0.510
	gw1.I.8677.1	annotation not avaliable (139 aa)							•		0.508
	grail3.0061005101	hypothetical protein (175 aa)							•		0.508
	grail3.0050017401	hypothetical protein (174 aa)							•		0.508
	grail3.0052005901	annotation not avaliable (72 aa)							•		0.505
	estExt_fgenesh4_pm.C_LG_VIII0087	hypothetical protein (521 aa)							•		0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
smart00848	57	smart00848, Inhibitor_I29, Cathepsin propeptide in	4e-21
pfam08246	58	pfam08246, Inhibitor_I29, Cathepsin propeptide inh	1e-20
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	2e-12
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	5e-06
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	2e-04

>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 80.4 bits (199), Expect = 4e-21
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 72  FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEE 130
           FE W  KHGKSY S EE+  R  IFK+NLK I+  N++     SY LG+N+FSD++ EE
Sbjct: 1   FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKY--EHSYKLGVNQFSDLTPEE 57

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Length = 57

>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 79.2 bits (196), Expect = 1e-20
 Identities = 31/60 (51%), Positives = 44/60 (73%), Gaps = 2/60 (3%)

Query: 72  FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEF 131
           FE W  K+GKSY S EE+L+R +IFK+NL+ I+  N++     SY LGLN+F+D++ EEF
Sbjct: 1   FEDWKKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGN--VSYTLGLNQFADLTDEEF 58

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Length = 58

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 69  VELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSH 128
           V  F  ++ +HGK Y++ +E   R   F +NL  I+A N   +    Y  G+N F D+S 
Sbjct: 166 VNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNN--KENVLYKKGMNRFGDLSF 223

Query: 129 EEFKNKYLT 137
           EEFK KYLT
Sbjct: 224 EEFKKKYLT 232

Length = 489

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 66  DKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSD 125
           +  +E FE +  K+ + + +  E+L+R   F++N  +++ ++ +      Y   +N+FSD
Sbjct: 121 EVYLE-FEEFNKKYNRKHATHAERLNRFLTFRNN--YLEVKSHK--GDEPYSKEINKFSD 175

Query: 126 MSHEEFKNKY 135
           ++ EEF+  +
Sbjct: 176 LTEEEFRKLF 185

Length = 448

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 71  LFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYW-LGLNEFSDMSHE 129
           LFE +   + ++Y +  E+  RL  F+ NL+ +    RE Q  + +   G+ +F D+S  
Sbjct: 37  LFEEFKRTYQRAYGTLTEEQQRLANFERNLELM----REHQARNPHARFGITKFFDLSEA 92

Query: 130 EFKNKYLTG 138
           EF  +YL G
Sbjct: 93  EFAARYLNG 101

Length = 348

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PF08246	58	Inhibitor_I29: Cathepsin propeptide inhibitor doma	99.81
PTZ00203	348	cathepsin L protease; Provisional	99.76
smart00848	57	Inhibitor_I29 Cathepsin propeptide inhibitor domai	99.71
PTZ00200	448	cysteine proteinase; Provisional	99.64
PTZ00021	489	falcipain-2; Provisional	99.63
KOG1542	372	consensus Cysteine proteinase Cathepsin F [Posttra	99.47
KOG1543	325	consensus Cysteine proteinase Cathepsin L [Posttra	98.58
PF08127	41	Propeptide_C1: Peptidase family C1 propeptide; Int	92.49

>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.81  E-value=5.8e-20  Score=118.45  Aligned_cols=58  Identities=52%  Similarity=0.835  Sum_probs=50.4

Q ss_pred             HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHH
Q 047264           72 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEF  131 (149)
Q Consensus        72 F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF  131 (149)
                      |+.|+.+|+|.|.+..|..+|+.||++|++.|.+||+..  ..+|++|+|+|||||++||
T Consensus         1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~--~~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen    1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANG--NNTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTT--SSSEEE-SSTTTTSSHHHH
T ss_pred             CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC--CCCeEEeCccccCcChhhC
Confidence            889999999999999999999999999999999999544  3799999999999999998

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>PTZ00203 cathepsin L protease; Provisional

Probab=99.76  E-value=3.5e-18  Score=145.24  Aligned_cols=68  Identities=26%  Similarity=0.465  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHh
Q 047264           66 DKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL  136 (149)
Q Consensus        66 ~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~  136 (149)
                      ..+...|++|+.+|+|.|.+..|+.+|+.||.+|+++|++||++.   .+|++|+|+|+|||+|||.+.|+
T Consensus        32 ~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~---~~~~lg~N~FaDlT~eEf~~~~l   99 (348)
T PTZ00203         32 TPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN---PHARFGITKFFDLSEAEFAARYL   99 (348)
T ss_pred             cHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC---CCeEEeccccccCCHHHHHHHhc
Confidence            345668999999999999998899999999999999999999875   69999999999999999998876

>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)

Probab=99.71  E-value=1.2e-17  Score=106.42  Aligned_cols=57  Identities=56%  Similarity=0.933  Sum_probs=53.1

Q ss_pred             HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHH
Q 047264           72 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEE  130 (149)
Q Consensus        72 F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eE  130 (149)
                      |+.|+.+|+|.|.+..|...|+.+|.+|++.|..||..+  ..+|++|+|+|||||++|
T Consensus         1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~--~~~~~~~~N~fsDlt~eE   57 (57)
T smart00848        1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKN--DHSYTLGLNQFADLTNEE   57 (57)
T ss_pred             ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEecCcccccCCCCC
Confidence            688999999999999999999999999999999999865  379999999999999886

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s

>PTZ00200 cysteine proteinase; Provisional

Probab=99.64  E-value=7e-16  Score=135.02  Aligned_cols=73  Identities=23%  Similarity=0.409  Sum_probs=65.4

Q ss_pred             CChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264           63 TSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        63 ~~~~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~  140 (149)
                      ..+.++...|++|+++|+|.|.+..|+.+|+.||++|++.|++||..    .+|++|+|+|||||++||.+.|+ +++
T Consensus       117 ~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~----~~y~lgiN~FsDlT~eEF~~~~~-~~~  189 (448)
T PTZ00200        117 KLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGD----EPYSKEINKFSDLTEEEFRKLFP-VIK  189 (448)
T ss_pred             cchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCc----CCeEEeccccccCCHHHHHHHhc-cCC
Confidence            34556778999999999999999899999999999999999999963    58999999999999999999887 644

>PTZ00021 falcipain-2; Provisional

Probab=99.63  E-value=9.6e-16  Score=135.28  Aligned_cols=71  Identities=41%  Similarity=0.643  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264           67 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        67 ~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~  140 (149)
                      +....|++|+.+|+|.|.+.+|+.+|+.||.+|+++|++||++..  .+|++|+|+|+|||+|||++.|+ +++
T Consensus       164 e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~--~ty~lgiNqFsDlT~EEF~~~~l-~~~  234 (489)
T PTZ00021        164 ENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKEN--VLYKKGMNRFGDLSFEEFKKKYL-TLK  234 (489)
T ss_pred             HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--CCEEEeccccccCCHHHHHHHhc-ccc
Confidence            445689999999999999989999999999999999999997642  69999999999999999999887 654

>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=1.5e-13  Score=116.14  Aligned_cols=70  Identities=43%  Similarity=0.682  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264           68 LVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        68 ~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~  140 (149)
                      ....|..|+.+|+|+|.+.+|..+|+.||++|+..+++++....  .+..+|+|+|||||++||+++|+ +.+
T Consensus        67 ~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~--gsA~yGvtqFSDlT~eEFkk~~l-~~~  136 (372)
T KOG1542|consen   67 LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDP--GSAEYGVTQFSDLTEEEFKKIYL-GVK  136 (372)
T ss_pred             hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCc--cccccCccchhhcCHHHHHHHhh-ccc
Confidence            47899999999999999999999999999999999999988763  37777999999999999999998 654

>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2e-07  Score=78.93  Aligned_cols=62  Identities=42%  Similarity=0.665  Sum_probs=54.9

Q ss_pred             HHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264           76 MLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        76 k~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~  140 (149)
                      +.+|.+.|.+..+...|+.+|.+|++.|..||...  ..+|.+|+|+|+|+|.+||++.+. +++
T Consensus        30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~--~~~~~~g~n~~~d~~~ee~~~~~~-~~~   91 (325)
T KOG1543|consen   30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKY--VLSFLMGVNQFADLTTEEFKRKKT-GKK   91 (325)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhh--ceeeeeccccccccchHHHHHhhc-ccc
Confidence            67777888777888999999999999999999975  279999999999999999999888 753

>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A

Probab=92.49  E-value=0.12  Score=31.14  Aligned_cols=35  Identities=34%  Similarity=0.454  Sum_probs=21.2

Q ss_pred             HHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCCC
Q 047264          101 KHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKP  141 (149)
Q Consensus       101 ~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~~  141 (149)
                      ++|+..|+.+   .+++-|.| |.+.|.+.++.+ + |...
T Consensus         4 e~I~~IN~~~---~tWkAG~N-F~~~~~~~ik~L-l-Gv~~   38 (41)
T PF08127_consen    4 EFIDYINSKN---TTWKAGRN-FENTSIEYIKRL-L-GVLP   38 (41)
T ss_dssp             HHHHHHHHCT----SEEE-----SSB-HHHHHHC-S--B-T
T ss_pred             HHHHHHHcCC---CcccCCCC-CCCCCHHHHHHH-c-CCCC
Confidence            5788889875   79999999 999888888764 4 5443

Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		2e-26
1pci_A	322	Procaricain Length = 322		6e-26
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		1e-07
3f75_P	106	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		3e-07
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		8e-05
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		2e-04

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 71/85 (83%), Gaps = 3/85 (3%)
Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           +FSIVGYS  +LTST++L++LFESWMLKH K Y++ +EK++R EIFKDNLK+ID  N++ 
Sbjct: 45  DFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK- 103
Query: 111 QITSSYWLGLNEFSDMSHEEFKNKY 135
              +SYWLGLN F+DMS++EFK KY
Sbjct: 104 --NNSYWLGLNVFADMSNDEFKEKY 126

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 71/89 (79%), Gaps = 3/89 (3%)
Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           +FSIVGYS ++LTST++L++LF SWML H K YE+ +EKL+R EIFKDNL +ID  N++ 
Sbjct: 1   DFSIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK- 59
Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGL 139
              +SYWLGLNEF+D+S++EF  KY+  L
Sbjct: 60  --NNSYWLGLNEFADLSNDEFNEKYVGSL 86

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 70  ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARN--RELQITSSYWLGLNEFSDMS 127
           +L+  W   + K Y   +++ HR  I++ N+KHI   N   +L + + Y LGLN+F+DM+
Sbjct: 3   DLWHQWKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVT-YTLGLNQFTDMT 60
Query: 128 HEEFKNKYLTGLKPDDD 144
            EEFK KYLT +    D
Sbjct: 61  FEEFKAKYLTEMSRASD 77

>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 106

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 70  ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHE 129
           + F S+   + KSY + EEK  R  IFK+NL +I   N   Q   SY L +N F D+S +
Sbjct: 23  DAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHN---QQGYSYSLKMNHFGDLSRD 79
Query: 130 EFKNKYLTGLKPDDD 144
           EF+ KYL G K   +
Sbjct: 80  EFRRKYL-GFKKSRN 93

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 70  ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITS-SYWLGLNEFSDMSH 128
           E +  + L H KSY S  E++ R  IFKDN+  I   N + +    +Y   +N+F DMS 
Sbjct: 25  EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 129 EEF 131
           EEF
Sbjct: 85  EEF 87

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 59  PEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYW 117
           PEE+  T      +E W   H K Y +  +++ R  I++ NLK+I   N E  +   +Y 
Sbjct: 3   PEEILDTH-----WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYE 57
Query: 118 LGLNEFSDMSHEEFKNKYLTGLK 140
           L +N   DM+ EE   K +TGLK
Sbjct: 58  LAMNHLGDMTSEEVVQK-MTGLK 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	3e-40
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	7e-33
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	4e-32
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	1e-31
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	8e-31
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	8e-30
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	5e-29
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	1e-28
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	3e-28
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	2e-24
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	2e-12

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  136 bits (344), Expect = 3e-40
 Identities = 53/99 (53%), Positives = 73/99 (73%), Gaps = 4/99 (4%)

Query: 51  EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
           +FSIVGYS ++LTST++L++LF SWML H K YE+ +EKL+R EIFKDNL +ID  N++ 
Sbjct: 1   DFSIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK- 59

Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRRR 149
              +SYWLGLNEF+D+S++EF  KY+ G   D    +  
Sbjct: 60  --NNSYWLGLNEFADLSNDEFNEKYV-GSLIDATIEQSY 95

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  116 bits (294), Expect = 7e-33
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 62  LTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRE-LQITSSYWLGL 120
           L   + L   +E W   H K Y +  +++ R  I++ NLK+I   N E      +Y L +
Sbjct: 1   LYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAM 60

Query: 121 NEFSDMSHEEFKNKYLTGLKPDDDEFRRR 149
           N   DM+ EE   K   GLK      R  
Sbjct: 61  NHLGDMTSEEVVQKMT-GLKVPLSHSRSN 88

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  115 bits (289), Expect = 4e-32
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 61  ELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRE-LQITSSYWLG 119
           +L     L   +  W   +GK Y+   E+  R  I++ NLK +   N E      SY LG
Sbjct: 1   QLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLG 60

Query: 120 LNEFSDMSHEEFKNKYLTGLKPDDDEFRR 148
           +N   DM+ EE  +     L+      R 
Sbjct: 61  MNHLGDMTSEEVMSLMS-SLRVPSQWQRN 88

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  113 bits (286), Expect = 1e-31
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 64  STDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRE-LQITSSYWLGLNE 122
            +  + E +E++   + +SY + +E+  R +IF+  L+  +  N +  Q   SY LG+N 
Sbjct: 14  PSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNL 73

Query: 123 FSDMSHEEFKNKYLTGLKPDDDEFRR 148
           F+DM+ EE K     GL    D  + 
Sbjct: 74  FTDMTPEEMKAYTH-GLIMPADLHKN 98

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  111 bits (281), Expect = 8e-31
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 53  SIVGYSPEELTSTDK-LVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRE-L 110
            + G   E  +       E +  + L H KSY S  E++ R  IFKDN+  I   N +  
Sbjct: 7   HLEGSDLEICSLPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFE 66

Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRRR 149
           +   +Y   +N+F DMS EEF        K    +    
Sbjct: 67  KGEVTYSKAMNQFGDMSKEEFLAYV-NRGKAQKPKHPEN 104

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  108 bits (273), Expect = 8e-30
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 62  LTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQIT-SSYWLGL 120
           LT    L   +  W   H + Y    E+  R  +++ N+K I+  N+E +    S+ + +
Sbjct: 2   LTFDHSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAM 60

Query: 121 NEFSDMSHEEFKNKYLTGLKPD 142
           N F DM+ EEF+     G +  
Sbjct: 61  NAFGDMTSEEFRQVMN-GFQNR 81

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  106 bits (268), Expect = 5e-29
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 70  ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRE-LQITSSYWLGLNEFSDMSH 128
           +L+  W   + K Y   +++ HR  I++ N+KHI   N        +Y LGLN+F+DM+ 
Sbjct: 3   DLWHQWKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61

Query: 129 EEFKNKYLTGLKPDDDEFRRR 149
           EEFK KYL        +    
Sbjct: 62  EEFKAKYL-TEMSRASDILSH 81

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106

 Score =  100 bits (250), Expect = 1e-28
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 64  STDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEF 123
                 + F S+   + KSY + EEK  R  IFK+NL +I   N++     SY L +N F
Sbjct: 17  KEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQ---GYSYSLKMNHF 73

Query: 124 SDMSHEEFKNKYLTGLKPDDDEFRRR 149
            D+S +EF+ KYL G K   +     
Sbjct: 74  GDLSRDEFRRKYL-GFKKSRNLKSHH 98

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  104 bits (262), Expect = 3e-28
 Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 68  LVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMS 127
            ++ FE +     KSY + E++    + F +++K++ +              +N  SD+S
Sbjct: 4   SIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNG----------GAINHLSDLS 53

Query: 128 HEEFKNKYLTGLKPDDDEFRRR 149
            +EFKN++L       +  + +
Sbjct: 54  LDEFKNRFL-MSAEAFEHLKTQ 74

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Length = 80

 Score = 89.0 bits (221), Expect = 2e-24
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 70  ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSH 128
           E +  +  K  K+YE+ E+   R  I+ ++   I+  NR+  +   ++ +G+N  +D++ 
Sbjct: 8   EEWVEYKSKFDKNYEAEEDL-MRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66

Query: 129 EEFKNKYLTGLKPD 142
           EEF  +    + P+
Sbjct: 67  EEFAQRSGKKVPPN 80

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 15/84 (17%)

Query: 71  LFESWMLKHGKSYESTEEKL-------------HRLEIFKDNLKHIDARNRELQITSSYW 117
           L  +W    GK   +  E +             +   ++K +   + A N      S   
Sbjct: 106 LGRNWACFTGKKVGTASENVYVNTAHLKNSQEKYSNRLYKYDHNFVKAINA--IQKSWTA 163

Query: 118 LGLNEFSDMSHEEFKNKYLTGLKP 141
               E+  ++  +   +     + 
Sbjct: 164 TTYMEYETLTLGDMIRRSGGHSRK 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	99.88
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	99.87
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	99.86
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.78
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.76
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.74
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.71
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.71
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.69
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.64
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.38
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	98.58
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	97.49
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	96.38

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=99.88  E-value=1.6e-22  Score=145.08  Aligned_cols=74  Identities=41%  Similarity=0.640  Sum_probs=68.3

Q ss_pred             ChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCCC
Q 047264           64 STDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKP  141 (149)
Q Consensus        64 ~~~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~~  141 (149)
                      ++..+...|+.|+.+|+|.|.+..|+.+|+.||++|+++|++||++.   .+|++|||+|||||++||++.|+ |++.
T Consensus        17 ~~~~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~---~sy~lglN~FaDLT~eEF~~~~l-g~~~   90 (106)
T 3f75_P           17 KEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG---YSYSLKMNHFGDLSRDEFRRKYL-GFKK   90 (106)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTSC---CSEEECCCTTTTCCHHHHHHHSC-CBCC
T ss_pred             CcHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCeeeCCcccccCCHHHHHHHHc-CCCC
Confidence            45678899999999999999998999999999999999999999874   79999999999999999999998 8653

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}

Probab=99.87  E-value=3.1e-22  Score=136.19  Aligned_cols=71  Identities=27%  Similarity=0.501  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhc-ccCcceeeecccCCCCCHHHHHHHHhcCCCCCc
Q 047264           70 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDD  143 (149)
Q Consensus        70 ~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~-~g~~sy~lglN~FaDLT~eEF~~~~~~g~~~~~  143 (149)
                      ..|+.|+.+|+|.|.+..|+.+| .||++|+++|++||+++ .|..+|++|+|+|||||++|| +.|+ |++.++
T Consensus         8 ~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf-~~~~-g~~~~~   79 (80)
T 2l95_A            8 EEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEF-AQRS-GKKVPP   79 (80)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHH-HHHH-TSCCCC
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHH-HHHh-CCCCCC
Confidence            57999999999999988899999 99999999999999874 345789999999999999999 8888 876543

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=99.86  E-value=1.4e-21  Score=165.53  Aligned_cols=86  Identities=63%  Similarity=1.068  Sum_probs=73.1

Q ss_pred             CccccccCCCCccCChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHH
Q 047264           50 GEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHE  129 (149)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~e  129 (149)
                      .+++++++++.++.+++.+.++|++|+.+|+|.|.+.+|+.+|++||++|+++|++||++.   .+|++|+|+|+|||++
T Consensus        44 ~~~s~~~y~~~dl~s~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~---~sy~~g~N~FaDlT~e  120 (363)
T 3tnx_A           44 MDFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKN---NSYWLGLNVFADMSND  120 (363)
T ss_dssp             ----------CCSSCHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSC---CSEEECSCTTTTSCHH
T ss_pred             ccccccCCChhhhcCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEeccccccCCHH
Confidence            4699999999999999999999999999999999999999999999999999999999976   7999999999999999


Q ss_pred             HHHHHHhcCC
Q 047264          130 EFKNKYLTGL  139 (149)
Q Consensus       130 EF~~~~~~g~  139 (149)
                      ||+++|+ |.
T Consensus       121 Ef~~~~~-~~  129 (363)
T 3tnx_A          121 EFKEKYT-GS  129 (363)
T ss_dssp             HHHHHHS-CS
T ss_pred             HHHHHhc-cc
Confidence            9999998 64

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.78  E-value=5.7e-19  Score=147.64  Aligned_cols=78  Identities=31%  Similarity=0.442  Sum_probs=70.0

Q ss_pred             CChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhc-ccCcceeeecccCCCCCHHHHHHHHhcCCCC
Q 047264           63 TSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFKNKYLTGLKP  141 (149)
Q Consensus        63 ~~~~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~-~g~~sy~lglN~FaDLT~eEF~~~~~~g~~~  141 (149)
                      +++..+...|+.||.+|+|.|.+..|+.+|++||++|+++|++||+++ .|..+|++|+|+|+|||++||+++|+ |+..
T Consensus        13 ~~~~~l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~~-~~~~   91 (331)
T 3qj3_A           13 LPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTH-GLIM   91 (331)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHHHHHHS-CCCC
T ss_pred             CCCHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHHHHHhc-cccc
Confidence            356778899999999999999998899999999999999999999874 24579999999999999999999988 7654

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.76  E-value=1.5e-18  Score=144.55  Aligned_cols=83  Identities=60%  Similarity=1.073  Sum_probs=69.3

Q ss_pred             cccCCCCccCChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHH
Q 047264           54 IVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKN  133 (149)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~  133 (149)
                      ++++...++.+++.+...|+.|+.+|+|.|.+..|+.+|+.||++|+++|++||++.   .+|++|+|+|+|||++||++
T Consensus         4 ~~~~~~~~~~~e~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~---~~~~~g~N~FaDlt~eEf~~   80 (322)
T 1pci_A            4 IVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKN---NSYWLGLNEFADLSNDEFNE   80 (322)
T ss_dssp             --------CTHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTTC---CSEEECSCTTTTSCHHHHHH
T ss_pred             cccCCcccccchHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccC---CceEEecCccccCCHHHHHH
Confidence            445555666677888999999999999999988999999999999999999999874   69999999999999999999


Q ss_pred             HHhcCCC
Q 047264          134 KYLTGLK  140 (149)
Q Consensus       134 ~~~~g~~  140 (149)
                      +++ |..
T Consensus        81 ~~~-g~~   86 (322)
T 1pci_A           81 KYV-GSL   86 (322)
T ss_dssp             HHC-CCB
T ss_pred             Hhc-CCC
Confidence            887 754

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.74  E-value=2.6e-18  Score=143.70  Aligned_cols=74  Identities=35%  Similarity=0.539  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhc-ccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264           65 TDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        65 ~~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~-~g~~sy~lglN~FaDLT~eEF~~~~~~g~~  140 (149)
                      +..+...|++||.+|+|.|.+..|+.+|+.||++|+++|++||+++ .|..+|++|+|+|+|||++||++ |+ |++
T Consensus        20 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~-~~-g~~   94 (329)
T 3qt4_A           20 KSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLA-YV-NRG   94 (329)
T ss_dssp             CCHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHHHH-HH-HHT
T ss_pred             HHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHHHH-hc-CCc
Confidence            4567789999999999999998899999999999999999999874 24579999999999999999999 77 654

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.71  E-value=1.4e-17  Score=138.24  Aligned_cols=74  Identities=34%  Similarity=0.472  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhc-ccCcceeeecccCCCCCHHHHHHHHhcCCCC
Q 047264           67 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFKNKYLTGLKP  141 (149)
Q Consensus        67 ~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~-~g~~sy~lglN~FaDLT~eEF~~~~~~g~~~  141 (149)
                      .+...|+.||++|+|.|.+..|+.+|+.||++|+++|++||++. .|..+|++|+|+|+|||++||++.++ |...
T Consensus         6 ~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf~~~~~-g~~~   80 (314)
T 1by8_A            6 ILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMT-GLKV   80 (314)
T ss_dssp             THHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHHHHHSC-CCCC
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHHHHHhc-cCCC
Confidence            36678999999999999998999999999999999999999864 23478999999999999999998887 7543

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=138.32  Aligned_cols=74  Identities=31%  Similarity=0.412  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhc-ccCcceeeecccCCCCCHHHHHHHHhcCCCC
Q 047264           67 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFKNKYLTGLKP  141 (149)
Q Consensus        67 ~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~-~g~~sy~lglN~FaDLT~eEF~~~~~~g~~~  141 (149)
                      .+...|+.||.+|+|.|.+..|+.+|+.||++|+++|++||++. .|..+|++|+|+|+|||++||++.++ |...
T Consensus         7 ~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf~~~~~-g~~~   81 (315)
T 2c0y_A            7 TLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMS-SLRV   81 (315)
T ss_dssp             GGHHHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHHHHHTT-SBCC
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHHHHHhc-CCCC
Confidence            46678999999999999888899999999999999999999864 24478999999999999999998888 7653

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.69  E-value=3.9e-17  Score=135.59  Aligned_cols=71  Identities=28%  Similarity=0.541  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhc-ccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264           68 LVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        68 ~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~-~g~~sy~lglN~FaDLT~eEF~~~~~~g~~  140 (149)
                      +...|+.||++|+|.| +..|+.+|+.||++|+++|++||++. .|..+|++|+|+|+|||.+||++.++ |++
T Consensus         8 ~~~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~-g~~   79 (316)
T 1cs8_A            8 LEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMN-GFQ   79 (316)
T ss_dssp             GHHHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHC-CBC
T ss_pred             HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHHHHHhc-CCC
Confidence            5678999999999999 77899999999999999999999864 23479999999999999999998887 754

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.64  E-value=3.3e-16  Score=129.70  Aligned_cols=70  Identities=37%  Similarity=0.675  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhc-ccCcceeeecccCCCCCHHHHHHHHhcC-CCC
Q 047264           70 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFKNKYLTG-LKP  141 (149)
Q Consensus        70 ~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~-~g~~sy~lglN~FaDLT~eEF~~~~~~g-~~~  141 (149)
                      ..|++||.+|+|.|.+..|+.+| .||++|+++|++||++. .|..+|++|+|+|+|||.+||+++++ | ++.
T Consensus         3 ~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~-g~~~~   74 (310)
T 2o6x_A            3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYL-TEMSR   74 (310)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHHHHHHC-CCCCC
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHHHHHhc-CCCCC
Confidence            47999999999999988899999 99999999999999864 23478999999999999999998888 7 543

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.38  E-value=6.2e-13  Score=110.31  Aligned_cols=58  Identities=31%  Similarity=0.504  Sum_probs=53.0

Q ss_pred             HHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCC
Q 047264           71 LFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL  139 (149)
Q Consensus        71 ~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~  139 (149)
                      .|++||++|+|.|.+..|+.+|+.||++|+++|++ |.      +   |+|+|+|||.+||+++++ |+
T Consensus         7 ~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~------~---g~N~F~Dlt~eEf~~~~~-~~   64 (312)
T 1xkg_A            7 TFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NG------G---AINHLSDLSLDEFKNRFL-MS   64 (312)
T ss_dssp             SHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HC------C---CCCTTTTSCHHHHHHHHS-BC
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-cc------C---CCCcccCCCHHHHHHHhc-CC
Confidence            59999999999999889999999999999999999 53      2   999999999999998777 64

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=98.58  E-value=6.4e-09  Score=89.94  Aligned_cols=50  Identities=12%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhcccCcceeee-cccCCCCCHHHHHHHHhcCCC
Q 047264           87 EEKLHRLEIFKDNLKHIDARNRELQITSSYWLG-LNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        87 ~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lg-lN~FaDLT~eEF~~~~~~g~~  140 (149)
                      .++.+|+.||++|+++|++||++.   .+|+++ +|+|+|||.+||+++++ |++
T Consensus       135 ~~~~~R~~if~~N~~~I~~~N~~~---~~~~~~~~n~faDlT~eEf~~~~~-~~~  185 (441)
T 3pdf_A          135 SQEKYSNRLYKYDHNFVKAINAIQ---KSWTATTYMEYETLTLGDMIRRSG-GHS  185 (441)
T ss_dssp             -------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccC---CceEeecccccccCCHHHHHHHhC-CCc
Confidence            466799999999999999999876   689998 89999999999999887 653

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=97.49  E-value=1.5e-05  Score=66.09  Aligned_cols=43  Identities=12%  Similarity=0.000  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhchhcccCcceeeecc-cCCCCCHHHHHHHH
Q 047264           91 HRLEIFKDNLKHIDARNRELQITSSYWLGLN-EFSDMSHEEFKNKY  135 (149)
Q Consensus        91 ~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN-~FaDLT~eEF~~~~  135 (149)
                      .|...+.-|.++|+++|++.+  .+|++|+| +|+|||.+||++++
T Consensus         3 ~~~~a~~~~~~~i~~~N~~~~--~~~~~~~n~~f~dlt~eE~~~~~   46 (325)
T 3hhi_A            3 VAEDAPVLSKAFVDRVNRLNR--GIWKAKYDGVMQNITLREAKRLN   46 (325)
T ss_dssp             ----------------------------------------------
T ss_pred             cccccccccHHHHHHHHhCCC--CceEEecccccccCCHHHHHHHh
Confidence            456677788999999998652  68999999 89999999998864

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=96.38  E-value=0.0017  Score=53.47  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=28.8

Q ss_pred             HHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264           99 NLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        99 Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~  140 (149)
                      +.++|+.||+..   .+|++|+| |+|+|.||++. ++ |..
T Consensus        11 ~~~~i~~~N~~~---~~~~~~~n-f~~~~~e~~~~-~l-g~~   46 (317)
T 3pbh_A           11 SDELVNYVNKRN---TTWQAGHN-FYNVDMSYLKR-LC-GTF   46 (317)
T ss_dssp             CHHHHHHHHHHT---CSEEECCC-CSSCCHHHHHH-TC-CBC
T ss_pred             cHHHHHHHHCCC---CCeEEeec-cccCCHHHHHH-Hc-CCC
Confidence            467899999875   79999999 99988877754 56 643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	9e-21
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	4e-20

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 83.6 bits (205), Expect = 9e-21
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 69  VELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSH 128
           ++ FE +     KSY + E++    + F +++K++ +              +N  SD+S 
Sbjct: 2   IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNG----------GAINHLSDLSL 51

Query: 129 EEFKNKYLTGLKPDD 143
           +EFKN++L   +  +
Sbjct: 52  DEFKNRFLMSAEAFE 66

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 4e-20
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 62  LTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGL 120
           LT    L   +  W   H + Y    E+  R  +++ N+K I+  N+E  +   S+ + +
Sbjct: 2   LTFDHSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAM 60

Query: 121 NEFSDMSHEEFKNKYL 136
           N F DM+ EEF+    
Sbjct: 61  NAFGDMTSEEFRQVMN 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.72
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.48

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.3e-18  Score=138.28  Aligned_cols=74  Identities=27%  Similarity=0.512  Sum_probs=64.6

Q ss_pred             hhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcc-cCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264           65 TDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQ-ITSSYWLGLNEFSDMSHEEFKNKYLTGLK  140 (149)
Q Consensus        65 ~~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~-g~~sy~lglN~FaDLT~eEF~~~~~~g~~  140 (149)
                      +..+...|++||++|+|.|.+ .|+.+|++||.+|++.|++||++.. +..+|++|+|+|+|||++||.+.++ +..
T Consensus         5 ~~~l~~~F~~f~~~~~K~Y~~-~ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~-~~~   79 (316)
T d1cs8a_           5 DHSLEAQWTKWKAMHNRLYGM-NEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMN-GFQ   79 (316)
T ss_dssp             CGGGHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHC-CBC
T ss_pred             cHHHHHHHHHHHHHhCCcCCC-HHHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhc-ccc
Confidence            345678899999999999987 4678999999999999999998752 4579999999999999999999887 543

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.48  E-value=1.4e-14  Score=116.72  Aligned_cols=56  Identities=30%  Similarity=0.535  Sum_probs=52.9

Q ss_pred             HHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHh
Q 047264           71 LFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL  136 (149)
Q Consensus        71 ~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~  136 (149)
                      .|++||.+|+|.|.+.+|+..|+.||.+|++.|++||.          |+|+|+|||.+||+.+++
T Consensus         4 ~f~~f~~~~~K~Y~~~~e~~~r~~if~~N~~~I~~~n~----------~~N~fsDlt~eEf~~~~~   59 (302)
T d1xkga1           4 TFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG----------AINHLSDLSLDEFKNRFL   59 (302)
T ss_dssp             SHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHCC----------CCCTTTTSCHHHHHHHHS
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcc----------CCCcCCCCCHHHHHHHhc
Confidence            59999999999999999999999999999999999985          789999999999998876