Citrus Sinensis ID: 047269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MKAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKKFVSSSKTQAQTQSSRIIKDDNGLTHDNLNFEHLQDSEMALDQEPGDRKKSNEEAESINHHCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIWHNN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccccccccHHHHHHHHHHHHHcccccccHccHHcccHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcHHHHHcccccccccccccHHcccccccccccccccccccccccccHHccccHHccccccccccccccccccccccccccccccccccccccccccHHcHccccccccccccc
Coil and Loop (DISEMBL)
mkaeneykkglwtQEEDRILLEYIRVHGRGQWNRIHKvtglkrcgkscrlrwlnylspnvkhgefteeEENLIIRLHNLLGNrwsliagrvpgrtdnqvknhWNTHLCkklginkkqkkkfvsssktqaqtqssriikddnglthdnlnfehlqdsemaldqepgdrkksneeAESINhhcneslllpteddfLNLCSPILLeflegqpldliwhnn
Flexible Loop (DISEMBL)
mkaeneykkglwtqeeDRILLEYIRVhgrgqwnrihkvtglkrcgkscRLRWLNYlspnvkhgefteEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHlckklginkkqkkkfvsssktqaqtqssriikddnglTHDNLNFEHLQDSEMALDQEPGDRKKSNEEAESINHHCNESLLLPTEDDFLNLCSPILLEflegqpldliwhnn
Low Complexity Region (SEG)
MKAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCkklginkkqkkkfvsssktqaqtqssRIIKDDNGLTHDNLNFEHLQDSEMALDQEPGDRKKSNEEAESINHHCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIWHNN
Disordered region (IsUnstruct)
*********GLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGI******************************************************************HCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIWH**
Disordered Region (DISOPRED)
*****EY**GLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCK****************************************************************************LLPTEDDFLNLCSPILLEFLEGQPLDLIWHN*
Disordered Region (DISEMBL)
********KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGIN********************RIIKDDNGLTHDNLNFEHLQDSEMA****************SINHHCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIWHNN
Disordered Region (DISPRO)
********KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKK******************************************************************ESLLLPTEDDFLNLCSPILLEFLEGQPLDLIW***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKKFVSSSKTQAQTQSSRIIKDDNGLTHDNLNFEHLQDSEMALDQEPGDRKKSNEEAESINHHCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIWHNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9SEI0	203	Transcription factor WER	yes	no	0.691	0.738	0.608	6e-51
Q96276	219	Transcription factor MYB2	no	no	0.944	0.936	0.502	2e-49
P27900	228	Trichome differentiation	no	no	0.506	0.482	0.781	2e-46
Q947R4	223	Trichome differentiation	no	no	0.506	0.493	0.781	4e-46
Q9SZP1	282	Transcription repressor M	no	no	0.552	0.425	0.593	1e-38
Q9S9K9	257	Transcription factor MYB3	no	no	0.474	0.400	0.660	2e-38
P81393	232	Myb-related protein 308 O	N/A	no	0.576	0.538	0.570	2e-38
Q38851	236	Transcription repressor M	no	no	0.566	0.521	0.555	3e-37
P81395	274	Myb-related protein 330 O	N/A	no	0.474	0.375	0.650	4e-37
Q38850	249	Transcription repressor M	no	no	0.525	0.457	0.615	4e-37

>sp|Q9SEI0|WER_ARATH Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1

 Score =  200 bits (508), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 122/161 (75%), Gaps = 11/161 (6%)

Query: 2   KAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK 61
           +  NEYKKGLWT EED+IL++Y++ HG+G WNRI K TGLKRCGKSCRLRW+NYLSPNVK
Sbjct: 11  EGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVK 70

Query: 62  HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKK- 120
            G FTE+EE+LIIRLH LLGNRWSLIA RVPGRTDNQVKN+WNTHL KKLGI  ++ K+ 
Sbjct: 71  RGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQS 130

Query: 121 ---------FVSSSKTQAQTQSSRIIKDDNGLTHDNLNFEH 152
                      + ++T  +T+ S I+ D+N +  D +  +H
Sbjct: 131 NGDIVYQINLPNPTETSEETKISNIV-DNNNILGDEIQEDH 170

Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC.
Arabidopsis thaliana (taxid: 3702)

>sp|Q96276|MYB23_ARATH Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/213 (50%), Positives = 138/213 (64%), Gaps = 8/213 (3%)

Query: 4   ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHG 63
           E+EYKKGLWT EED+IL++Y+R HG+G WNRI K TGLKRCGKSCRLRW+NYLSPNV  G
Sbjct: 9   EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRG 68

Query: 64  EFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINK-----KQK 118
            FT++EE+LIIRLH LLGNRWSLIA RVPGRTDNQVKN+WNTHL KKLG+       K  
Sbjct: 69  NFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGDHSTAVKAA 128

Query: 119 KKFVSSSKTQAQTQSSRIIKDDNGLTHDNLNFEHLQD-SEMALDQEPGDRKKSNEEAESI 177
               S       T +S   ++ +G  +  L F+ L D S++    +      ++ E  + 
Sbjct: 129 CGVESPPSMALITTTSSSHQEISGGKNSTLRFDTLVDESKLKPKSKLVHATPTDVEVAAT 188

Query: 178 NHHCNESLLLPTEDDFLNLCSPILLEFLEGQPL 210
             +  ++  +  EDDF  L S  +++F  G  L
Sbjct: 189 VPNLFDTFWV-LEDDF-ELSSLTMMDFTNGYCL 219

Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumlation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching.

Arabidopsis thaliana (taxid: 3702)

>sp|P27900|GL1_ARATH Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2

 Score =  185 bits (469), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 94/110 (85%)

Query: 2   KAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK 61
           K   EYKKGLWT EED IL++Y+  HG GQWNRI + TGLKRCGKSCRLRW+NYLSPNV 
Sbjct: 9   KENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVN 68

Query: 62  HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
            G FTE+EE+LIIRLH LLGNRWSLIA RVPGRTDNQVKN+WNTHL KKL
Sbjct: 69  KGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118

Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in leaves. Together with TTG1 and GL3, promotes trichome formation and endoreplication. Regulates the production of a signal that induces hair (trichome) precursor cells on leaf primordia to differentiate. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q947R4|GL1_ARALY Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2

 Score =  184 bits (467), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 94/110 (85%)

Query: 2   KAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK 61
           K   EYKKGLWT EED IL++Y+  HG GQWNRI + TGLKRCGKSCRLRW+NYLSPNV 
Sbjct: 9   KENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVN 68

Query: 62  HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
            G FTE+EE+LIIRLH LLGNRWSLIA RVPGRTDNQVKN+WNTHL KKL
Sbjct: 69  KGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118

Regulates the production of a signal that induces hair (trichome) precursor cells on leaf primordia to differentiate.

Arabidopsis lyrata (taxid: 59689)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
           KG WT+EED  L+ YI+ HG G W  + K  GL RCGKSCRLRW+NYL P++K G FTEE
Sbjct: 14  KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 69  EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL---GINKKQKKKFVSSS 125
           E+ LII+LH+LLGN+WSLIAGR+PGRTDN++KN+WNTH+ +KL   GI+    +    SS
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQESS 133

Query: 126 KTQ 128
            +Q
Sbjct: 134 ASQ 136

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 89/103 (86%)

Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
           KG WT+EED++L++YIR HG G W  + +  GL+RCGKSCRLRW+NYL P++K G FTEE
Sbjct: 14  KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEE 73

Query: 69  EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
           E+ LII+LH+LLGN+WSLIAGR+PGRTDN++KN+WNTH+ +KL
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 94/128 (73%), Gaps = 3/128 (2%)

Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
           KG WT+EED  L+ YIR HG G W  + K  GL RCGKSCRLRW+NYL P++K G FTEE
Sbjct: 14  KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 69  EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL---GINKKQKKKFVSSS 125
           E+ LII+LH+LLGN+WSLIAGR+PGRTDN++KN+WNTH+ +KL   GI+    +     +
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSINDGT 133

Query: 126 KTQAQTQS 133
            +Q Q  +
Sbjct: 134 ASQDQVTT 141

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 96/126 (76%), Gaps = 3/126 (2%)

Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
           KG WT+EED+ L++YIR HG G W  + K  GL RCGKSCRLRW+NYL P++K G FT++
Sbjct: 14  KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDD 73

Query: 69  EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL---GINKKQKKKFVSSS 125
           E+ +II+LH+LLGN+WSLIAGR+PGRTDN++KN+WNTH+ +KL   GI+ +  ++   S 
Sbjct: 74  EDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINESK 133

Query: 126 KTQAQT 131
              +Q 
Sbjct: 134 TVSSQV 139

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  154 bits (389), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 85/103 (82%)

Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
           KG WT+EED+ L+ YIR HG G W  + K  GL RCGKSCRLRW+NYL P++K G FTEE
Sbjct: 14  KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 69  EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
           E+ +II+LH+LLGN+WSLIAG +PGRTDN++KN+WNTH+ +KL
Sbjct: 74  EDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKL 116

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score =  154 bits (389), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 89/117 (76%), Gaps = 3/117 (2%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           K+G WT EED IL+ +I+  G G+W  + K  GL RCGKSCRLRW+NYL P+VK G  T 
Sbjct: 24  KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITS 83

Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL---GINKKQKKKF 121
           +EE+LI+RLH LLGNRWSLIAGR+PGRTDN++KN+WNTHL KKL   GI+ +  K  
Sbjct: 84  DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL 140

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
359473180	220	PREDICTED: transcription factor WER-like	0.963	0.95	0.567	2e-61
359491528	216	PREDICTED: transcription factor WER-like	0.930	0.935	0.564	1e-57
147835010	216	hypothetical protein VITISV_016818 [Viti	0.930	0.935	0.564	1e-57
224119334	216	predicted protein [Populus trichocarpa]	0.907	0.912	0.540	5e-54
281428053	206	MYB transcription factor [Gossypium arbo	0.903	0.951	0.545	5e-53
296087662	238	unnamed protein product [Vitis vinifera]	0.599	0.546	0.738	1e-50
295002524	189	R2R3-type MYB transcription factor [Jatr	0.857	0.984	0.532	4e-50
15241488	203	transcription factor WER [Arabidopsis th	0.691	0.738	0.608	3e-49
242390095	221	transcription factor Myb [Eucalyptus gra	0.548	0.538	0.75	7e-49
20514371	193	werewolf [Cucumis sativus]	0.691	0.777	0.602	2e-48

>gi|359473180|ref|XP_003631256.1| PREDICTED: transcription factor WER-like [Vitis vinifera] gi|297739034|emb|CBI28523.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/222 (56%), Positives = 156/222 (70%), Gaps = 13/222 (5%)

Query: 1   MKAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV 60
           MK E+ YKKGLWT+EEDRILL+YI+VHGRG+WNRI K+TGLKR GKSCRLRW+NYLSP+V
Sbjct: 1   MKGEDNYKKGLWTKEEDRILLDYIQVHGRGRWNRISKITGLKRYGKSCRLRWMNYLSPSV 60

Query: 61  KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKK 120
           KHGEFTE+EE+LIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWN+HLCK+LGI KK +K 
Sbjct: 61  KHGEFTEQEEDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNSHLCKRLGIKKKNRKT 120

Query: 121 FVSSSKTQA-----QTQSSRIIKDDNGLTHDNLNFEHLQDSEMALDQEP-GDRKKSNEEA 174
            V+S K  +       +   ++   +   HDN    ++    +   Q P    + S E+ 
Sbjct: 121 AVTSLKPHSTNVDNTPKRQALVDSISKPFHDN----NMDVGGVTRRQCPLSGAQVSEEQP 176

Query: 175 ESINHHCNESLLLPTEDDFLNLCSPILLEFLEG--QPLDLIW 214
             +  HC +SL   T  + L +C+P  +EFLEG   P D  W
Sbjct: 177 AEVGWHCVDSLWASTA-EHLRVCTPTSIEFLEGYYSPGDAFW 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491528|ref|XP_002279128.2| PREDICTED: transcription factor WER-like [Vitis vinifera] gi|297733776|emb|CBI15023.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/225 (56%), Positives = 153/225 (68%), Gaps = 23/225 (10%)

Query: 1   MKAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV 60
           M+  N Y+KGLWT EEDRIL++YIRVHG+G+WNRI KVTGLKRCGKSCRLRW+NYLSP+V
Sbjct: 1   MEGANGYRKGLWTVEEDRILMDYIRVHGKGKWNRIAKVTGLKRCGKSCRLRWMNYLSPSV 60

Query: 61  KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKK 120
           K G+F++EE++LIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL KKLGI KK K K
Sbjct: 61  KRGDFSQEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLSKKLGI-KKHKSK 119

Query: 121 FVSSSKTQ-----------AQTQSSRIIKDDNGLTHDNLNFEHLQDSEMALDQEPGDRKK 169
              SS+ Q           +   S    +D NG T   +  E L  S M +     D + 
Sbjct: 120 SEGSSQAQSIEAKEAHSMPSNPDSKPPSEDKNGETGPEVR-EDLPRS-MTMLANTQDMEM 177

Query: 170 SNEEAESINHHCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIW 214
             E+ ES       SL   T D  L+L +P L++FL+G  LD +W
Sbjct: 178 GTEDYES-------SLWFSTGD--LDLNAPSLMQFLDGHVLDFVW 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835010|emb|CAN70191.1| hypothetical protein VITISV_016818 [Vitis vinifera]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/225 (56%), Positives = 153/225 (68%), Gaps = 23/225 (10%)

Query: 1   MKAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV 60
           M+  N Y+KGLWT EEDRIL++YIRVHG+G+WNRI KVTGLKRCGKSCRLRW+NYLSP+V
Sbjct: 1   MEGANGYRKGLWTVEEDRILMDYIRVHGKGKWNRIAKVTGLKRCGKSCRLRWMNYLSPSV 60

Query: 61  KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKK 120
           K G+F++EE++LIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL KKLGI KK K K
Sbjct: 61  KRGDFSQEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLSKKLGI-KKHKSK 119

Query: 121 FVSSSKTQ-----------AQTQSSRIIKDDNGLTHDNLNFEHLQDSEMALDQEPGDRKK 169
              SS+ Q           +   S    +D NG T   +  E L  S M +     D + 
Sbjct: 120 SEGSSQAQSIEAKEAHSMPSNPDSKPPSEDKNGETGPXVR-EDLPRS-MTMLANTQDMEM 177

Query: 170 SNEEAESINHHCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIW 214
             E+ ES       SL   T D  L+L +P L++FL+G  LD +W
Sbjct: 178 GTEDYES-------SLWFSTGD--LDLNAPSLMQFLDGHVLDFVW 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119334|ref|XP_002318045.1| predicted protein [Populus trichocarpa] gi|222858718|gb|EEE96265.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 120/222 (54%), Positives = 152/222 (68%), Gaps = 25/222 (11%)

Query: 6   EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEF 65
           EY+KGLWT+EEDRIL ++++VHG+G+WN+I KVTGLKRCGKSCRLRW+NYLSP+VK G F
Sbjct: 8   EYRKGLWTEEEDRILTDHVKVHGKGKWNQIAKVTGLKRCGKSCRLRWMNYLSPSVKRGVF 67

Query: 66  TEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKKFVSSS 125
           +EEE++LIIRLH LLGNRWSLIAGRVPGRTDNQVKNHWNTHL K+LGI +K+ K   SSS
Sbjct: 68  SEEEDDLIIRLHKLLGNRWSLIAGRVPGRTDNQVKNHWNTHLSKRLGIKQKKCKVSASSS 127

Query: 126 KTQ----AQTQSSRIIKDDNGLTHDNLNFEH--LQDS-----EMALDQEPGDRKKSNEEA 174
           K      A +++     D+  L+H+     H  +QD+     EM   Q+P          
Sbjct: 128 KFSEKLGANSRTKLSSNDEPILSHNGEAEIHTEIQDNSEKVKEMTSSQDP---------- 177

Query: 175 ESINHHCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIWHN 216
             +   C ++  L   D F   CSP L+EFL+ Q LDL  +N
Sbjct: 178 -VLFGDCYDNFWLSNSDPF--SCSPNLMEFLD-QSLDLFCYN 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|281428053|gb|ADA69473.1| MYB transcription factor [Gossypium arboreum]

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 121/222 (54%), Positives = 144/222 (64%), Gaps = 26/222 (11%)

Query: 1   MKAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV 60
           M+ ++EYKKGLW+ EED IL+EY+R HG+G+WNRI KVTGLKRCGKSCRLRW+NYLSP V
Sbjct: 1   MEEKSEYKKGLWSAEEDSILMEYVRKHGKGKWNRIPKVTGLKRCGKSCRLRWINYLSPGV 60

Query: 61  KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKK 120
           K G F+++E +LIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL KKLGI    K  
Sbjct: 61  KRGRFSDQENDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLSKKLGI---IKNP 117

Query: 121 FVSSSKTQAQTQSSRIIKDDNGLTHDNLNFEHLQDSEM--ALDQEPGDRKKSNEEAESI- 177
              SS++Q  ++SSR   DDN       N    QD  M    D  P  R   N  +    
Sbjct: 118 TAHSSQSQTHSKSSR--DDDN-------NHSQAQDQVMMTTTDALPSPRDYGNGSSSWFW 168

Query: 178 ----NHHCNESLLLPTEDDFLNLCSPILLEFLEGQPLDLIWH 215
               N H N  L  PT  + L+     LL+  +   LD +WH
Sbjct: 169 QCHNNDHFN--LYTPTPVNVLD-----LLDHDDHVSLDFVWH 203

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087662|emb|CBI34918.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 111/130 (85%)

Query: 1   MKAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV 60
           M+  N+YKKGLWT EED+IL++Y++ HG+GQWNRI K TGL+RCGKSCRLRW+NYLSPNV
Sbjct: 1   MEEVNQYKKGLWTLEEDKILMDYVKEHGKGQWNRIAKKTGLRRCGKSCRLRWINYLSPNV 60

Query: 61  KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKK 120
           K G+FT EEE+LIIRLH LLGNRWSLIAGRVPGRTDNQVKN+WNTHL KKLGI KK    
Sbjct: 61  KRGDFTAEEEDLIIRLHKLLGNRWSLIAGRVPGRTDNQVKNYWNTHLSKKLGIKKKNNGA 120

Query: 121 FVSSSKTQAQ 130
            VSS+ T  +
Sbjct: 121 NVSSTLTNTR 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295002524|gb|ADF59040.1| R2R3-type MYB transcription factor [Jatropha curcas]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 139/203 (68%), Gaps = 17/203 (8%)

Query: 1   MKAE-NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN 59
           MKAE +++KK  WT+EEDRIL+EYIRV+G G+WNRI ++TGL+RCGKSCRLRWLNYLSPN
Sbjct: 1   MKAEKDQFKKRFWTKEEDRILMEYIRVNGGGRWNRISQLTGLRRCGKSCRLRWLNYLSPN 60

Query: 60  VKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKK 119
           V H +F++EE++LIIRLHNLLGNRWSLIAGR+PGRT NQVKNHWN HL K+LG+ K+ +K
Sbjct: 61  VNHADFSQEEDDLIIRLHNLLGNRWSLIAGRLPGRTANQVKNHWNCHLRKRLGLKKQARK 120

Query: 120 KFV-SSSKTQAQTQSSRIIKDDNGLTHDNLNFEHLQDSEMALDQE-PGDRKKSNEEAESI 177
             + SSSKT+ Q                N + + LQD +  ++ E P      +      
Sbjct: 121 PVIRSSSKTEIQ--------------EINNSGQFLQDGKAIINNEDPFGVGTDSSNGGEA 166

Query: 178 NHHCNESLLLPTEDDFLNLCSPI 200
               ++  L   +DDF NL S I
Sbjct: 167 QLQVDDLSLFYNDDDFFNLNSQI 189

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241488|ref|NP_196979.1| transcription factor WER [Arabidopsis thaliana] gi|75337113|sp|Q9SEI0.1|WER_ARATH RecName: Full=Transcription factor WER; AltName: Full=Myb-related protein 66; Short=AtMYB66; AltName: Full=Protein WEREWOLF gi|6601337|gb|AAF18939.1|AF126399_1 werewolf [Arabidopsis thaliana] gi|9755743|emb|CAC01874.1| myb transcription factor werewolf (WER)/ MYB66 [Arabidopsis thaliana] gi|41619396|gb|AAS10093.1| MYB transcription factor [Arabidopsis thaliana] gi|111074160|gb|ABH04453.1| At5g14750 [Arabidopsis thaliana] gi|225898913|dbj|BAH30587.1| hypothetical protein [Arabidopsis thaliana] gi|332004690|gb|AED92073.1| transcription factor WER [Arabidopsis thaliana]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 122/161 (75%), Gaps = 11/161 (6%)

Query: 2   KAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK 61
           +  NEYKKGLWT EED+IL++Y++ HG+G WNRI K TGLKRCGKSCRLRW+NYLSPNVK
Sbjct: 11  EGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVK 70

Query: 62  HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKK- 120
            G FTE+EE+LIIRLH LLGNRWSLIA RVPGRTDNQVKN+WNTHL KKLGI  ++ K+ 
Sbjct: 71  RGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQS 130

Query: 121 ---------FVSSSKTQAQTQSSRIIKDDNGLTHDNLNFEH 152
                      + ++T  +T+ S I+ D+N +  D +  +H
Sbjct: 131 NGDIVYQINLPNPTETSEETKISNIV-DNNNILGDEIQEDH 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242390095|dbj|BAH80548.1| transcription factor Myb [Eucalyptus grandis]

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 108/120 (90%), Gaps = 1/120 (0%)

Query: 1   MKAEN-EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN 59
           MK E  E++KGLWT EEDR+L +Y+RVHG+G+WNRI ++TGLKRCGKSCRLRW+NYLSP+
Sbjct: 1   MKGEKKEHRKGLWTAEEDRLLADYVRVHGKGKWNRIPQMTGLKRCGKSCRLRWMNYLSPS 60

Query: 60  VKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKK 119
           VK G+F+EEE++LIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL K+LG  K + +
Sbjct: 61  VKRGDFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLSKRLGFKKGKGR 120

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20514371|gb|AAM23006.1| werewolf [Cucumis sativus]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 121/161 (75%), Gaps = 11/161 (6%)

Query: 2   KAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK 61
           +  NEYKKGLWT EED+IL++Y++ HG+G WNRI K TGLKRCGKSCRLRW+NYLSPNVK
Sbjct: 4   EGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVK 63

Query: 62  HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKK- 120
            G FTE+EE+LIIRLH L GNRWSLIA RVPGRTDNQVKN+WNTHL KKLGI  ++ K+ 
Sbjct: 64  RGNFTEQEEDLIIRLHKLPGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQS 123

Query: 121 ---------FVSSSKTQAQTQSSRIIKDDNGLTHDNLNFEH 152
                      + ++T  +T+ S I+ D+N +  D +  +H
Sbjct: 124 NGDIVYQINLPNPTETSEETKISNIV-DNNNILGDEIQEDH 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2185470	203	MYB66 "myb domain protein 66"	0.488	0.522	0.792	2.3e-46
TAIR|locus:2170553	219	MYB23 "myb domain protein 23"	0.479	0.474	0.798	1.3e-45
TAIR|locus:2086475	228	MYB0 "myb domain protein 0" [A	0.488	0.464	0.783	3.1e-44
TAIR|locus:2009452	257	MYB3 "myb domain protein 3" [A	0.456	0.385	0.666	3.4e-38
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.456	0.351	0.666	3.9e-37
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.479	0.309	0.653	6.3e-37
TAIR|locus:2169538	258	TT2 "TRANSPARENT TESTA 2" [Ara	0.470	0.395	0.647	1e-36
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.456	0.419	0.646	1.7e-36
TAIR|locus:2092820	249	MYB5 "myb domain protein 5" [A	0.460	0.401	0.66	4.4e-36
TAIR|locus:1005716764	212	HOS10 "high response to osmoti	0.456	0.466	0.626	5.7e-36

TAIR|locus:2185470 MYB66 "myb domain protein 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 84/106 (79%), Positives = 95/106 (89%)

Query:     2 KAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK 61
             +  NEYKKGLWT EED+IL++Y++ HG+G WNRI K TGLKRCGKSCRLRW+NYLSPNVK
Sbjct:    11 EGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVK 70

Query:    62 HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
              G FTE+EE+LIIRLH LLGNRWSLIA RVPGRTDNQVKN+WNTHL
Sbjct:    71 RGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHL 116

GO:0003677 "DNA binding" evidence=IEA;ISS;IPI

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045165 "cell fate commitment" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0001708 "cell fate specification" evidence=RCA

GO:0009913 "epidermal cell differentiation" evidence=RCA

TAIR|locus:2170553 MYB23 "myb domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 83/104 (79%), Positives = 94/104 (90%)

Query:     4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHG 63
             E+EYKKGLWT EED+IL++Y+R HG+G WNRI K TGLKRCGKSCRLRW+NYLSPNV  G
Sbjct:     9 EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRG 68

Query:    64 EFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
              FT++EE+LIIRLH LLGNRWSLIA RVPGRTDNQVKN+WNTHL
Sbjct:    69 NFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHL 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010026 "trichome differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010091 "trichome branching" evidence=IMP

GO:0048629 "trichome patterning" evidence=IGI

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0001708 "cell fate specification" evidence=RCA

GO:0009913 "epidermal cell differentiation" evidence=RCA

TAIR|locus:2086475 MYB0 "myb domain protein 0" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 83/106 (78%), Positives = 91/106 (85%)

Query:     2 KAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK 61
             K   EYKKGLWT EED IL++Y+  HG GQWNRI + TGLKRCGKSCRLRW+NYLSPNV 
Sbjct:     9 KENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVN 68

Query:    62 HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
              G FTE+EE+LIIRLH LLGNRWSLIA RVPGRTDNQVKN+WNTHL
Sbjct:    69 KGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHL 114

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0048629 "trichome patterning" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0009913 "epidermal cell differentiation" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 66/99 (66%), Positives = 86/99 (86%)

Query:     9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
             KG WT+EED++L++YIR HG G W  + +  GL+RCGKSCRLRW+NYL P++K G FTEE
Sbjct:    14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEE 73

Query:    69 EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
             E+ LII+LH+LLGN+WSLIAGR+PGRTDN++KN+WNTH+
Sbjct:    74 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0009800 "cinnamic acid biosynthetic process" evidence=TAS

GO:0009892 "negative regulation of metabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 66/99 (66%), Positives = 82/99 (82%)

Query:     9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
             KG WT+EED  L+ YI+ HG G W  + K  GL RCGKSCRLRW+NYL P++K G FTEE
Sbjct:    14 KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query:    69 EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
             E+ LII+LH+LLGN+WSLIAGR+PGRTDN++KN+WNTH+
Sbjct:    74 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query:     4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHG 63
             EN  KKG WTQEED  L+++I+ HG G W  + K  GL RCGKSCRLRW NYL P++K G
Sbjct:     9 ENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLRPDIKRG 68

Query:    64 EFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
              FTEEEE  II LH+LLGN+WS IAG +PGRTDN++KN+WNTHL
Sbjct:    69 NFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHL 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2169538 TT2 "TRANSPARENT TESTA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 66/102 (64%), Positives = 80/102 (78%)

Query:     6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEF 65
             E  +G WT  ED+IL +YI  HG G+W+ +    GLKRCGKSCRLRW NYL P +K G  
Sbjct:    13 ELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNI 72

Query:    66 TEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
             + +EE LIIRLHNLLGNRWSLIAGR+PGRTDN++KNHWN++L
Sbjct:    73 SSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNL 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010023 "proanthocyanidin biosynthetic process" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 64/99 (64%), Positives = 84/99 (84%)

Query:     9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
             KG WT+EED+ L++YIR HG G W  + K  GL RCGKSCRLRW+NYL P++K G FT++
Sbjct:    14 KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDD 73

Query:    69 EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
             E+ +II+LH+LLGN+WSLIAGR+PGRTDN++KN+WNTH+
Sbjct:    74 EDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2092820 MYB5 "myb domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 66/100 (66%), Positives = 81/100 (81%)

Query:     8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
             K+G WT EED IL+ +I+  G G+W  + K  GL RCGKSCRLRW+NYL P+VK G  T 
Sbjct:    24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITS 83

Query:    68 EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
             +EE+LI+RLH LLGNRWSLIAGR+PGRTDN++KN+WNTHL
Sbjct:    84 DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL 123

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0009845 "seed germination" evidence=NAS

GO:0010026 "trichome differentiation" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0048354 "mucilage biosynthetic process involved in seed coat development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:1005716764 HOS10 "high response to osmotic stress 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 62/99 (62%), Positives = 82/99 (82%)

Query:     9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
             KG WT+EED+ L++YIR HG G W  + K  GL RCGKSCRLRW+NYL P++K G FT+ 
Sbjct:    14 KGAWTKEEDQRLIDYIRNHGEGSWRSLPKSVGLLRCGKSCRLRWINYLRPDLKRGNFTDG 73

Query:    69 EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
             EE +I++LH+L GN+WSLIAG++PGRTDN++KN+WNTH+
Sbjct:    74 EEQIIVKLHSLFGNKWSLIAGKLPGRTDNEIKNYWNTHI 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009631 "cold acclimation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SEI0	WER_ARATH	No assigned EC number	0.6086	0.6912	0.7389	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002700001 SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (220 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	1e-46
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-43
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	8e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-13
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	9e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-05
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	0.001
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.001

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  154 bits (390), Expect = 1e-46
 Identities = 72/115 (62%), Positives = 89/115 (77%), Gaps = 3/115 (2%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           K+G WT EED IL+ +I+  G G+W  + K  GL RCGKSCRLRW+NYL P+VK G  T 
Sbjct: 24  KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITS 83

Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL---GINKKQKK 119
           +EE+LI+RLH LLGNRWSLIAGR+PGRTDN++KN+WNTHL KKL   GI+ +  K
Sbjct: 84  DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHK 138

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  150 bits (381), Expect = 2e-43
 Identities = 63/104 (60%), Positives = 82/104 (78%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           +KGLW+ EED  LL +I  +G G W+ + K  GL+RCGKSCRLRW+NYL P++K G F++
Sbjct: 13  RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72

Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
           +EENLII LH +LGNRWS IA ++PGRTDN++KN WN+ L KKL
Sbjct: 73  QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116

Length = 459

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           K G W + ED  L   ++  G   W+++  +      GK    RW N+L+P +K   ++E
Sbjct: 19  KGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSE 77

Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWN 104
           EE+  +I L   LG +WS IA     RT  Q    + 
Sbjct: 78  EEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 62.5 bits (153), Expect = 1e-13
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 62  HGEFTEEEENLIIRLHNLLGNR-WSLIAGRVPGRTDNQVKNHWNTHL 107
            G +T EE+ L+I      GN  WS IA  +PGRTDNQ KN WN +L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 57.5 bits (140), Expect = 9e-12
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 9  KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL 56
          +G WT EED +L+E ++ HG G W++I K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 63  GEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL 107
           GE+TEEE+ L+I L    G N W  IA  +PGRT  Q +  W   L
Sbjct: 2   GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLL 47

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 56.0 bits (136), Expect = 4e-11
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 64  EFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL 107
            +TEEE+ L++      G N W  IA  +PGRT  Q +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 9  KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSP 58
          KG WT+EED +L+E ++ +G+  W +I K     R  + CR RW N L P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEE 70
          WT+EED  LL+ +  +G   W +I +   L R   +CR RW   L P    G +T+EE+
Sbjct: 1  WTEEEDEKLLKLVEKYGN-DWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEED 56

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL 56
          WT+EED +LLE ++ +G+  W +I K     R  K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 65  FTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
           +TEEE+  +++L    GN W  IA  + GRT +  ++ W   L  K 
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 58  PNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWN 104
           P++K  E+T EE+  ++ L  LL  +W  IA  V GRT  Q    +N
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTAQQCLERYN 46

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHK 37
          WT EED  L+E +  +G G W +I K
Sbjct: 3  WTDEEDEALVEGVEKYGVGNWAKILK 28

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.82
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.73
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.64
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.63
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.58
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.53
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.5
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.38
PLN03212	249	Transcription repressor MYB5; Provisional	99.33
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.32
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.24
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.21
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.17
PLN03091	459	hypothetical protein; Provisional	99.16
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.11
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.99
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.55
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.3
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.28
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.94
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.89
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.72
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.69
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.68
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.5
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.46
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.37
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.34
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.32
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.91
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.87
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.79
PRK13923	170	putative spore coat protein regulator protein YlbO	96.79
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.72
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.7
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.45
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.3
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.27
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.98
PRK13923	170	putative spore coat protein regulator protein YlbO	95.71
KOG2656	445	consensus DNA methyltransferase 1-associated prote	94.42
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.25
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.51
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	93.25
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.15
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.22
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	90.82
KOG1194	534	consensus Predicted DNA-binding protein, contains	90.27
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	86.31
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	86.11
smart00595	89	MADF subfamily of SANT domain.	84.94
KOG4167	907	consensus Predicted DNA-binding protein, contains	84.43
KOG4282	345	consensus Transcription factor GT-2 and related pr	84.39
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	81.57

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=2.5e-35  Score=249.68  Aligned_cols=110  Identities=63%  Similarity=1.156  Sum_probs=104.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR   83 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~   83 (217)
                      ++++++++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||.|||++|++++..||++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            35789999999999999999999998899999998866899999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           84 WSLIAGRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        84 W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      |+.||+.|||||+++|||||+.++++++..
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r  129 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLR  129 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence            999999999999999999999999887654

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=1.9e-34  Score=247.38  Aligned_cols=110  Identities=63%  Similarity=1.091  Sum_probs=105.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWS   85 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~   85 (217)
                      .+.||+||+|||++|+++|++||.++|..||+.+|++|++++||.||.|||+|.+++|.||+|||.+|++++..+|++|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHHhhHHhcCcc
Q 047269           86 LIAGRVPGRTDNQVKNHWNTHLCKKLGINK  115 (217)
Q Consensus        86 ~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~~~  115 (217)
                      .||++|||||++.|||+|+..|+|++....
T Consensus        86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999886544

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-33  Score=253.01  Aligned_cols=109  Identities=58%  Similarity=1.093  Sum_probs=104.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 047269            5 NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRW   84 (217)
Q Consensus         5 ~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W   84 (217)
                      .+++||+||+|||++|+++|++||.++|..||+.++.+|+++|||+||.++|+|.+++++||.|||++|++++.+||++|
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKW   89 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRW   89 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcch
Confidence            56899999999999999999999999999999988778999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           85 SLIAGRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        85 ~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      +.||++|||||+++||+||+.++++++..
T Consensus        90 skIAk~LPGRTDnqIKNRWnslLKKklr~  118 (459)
T PLN03091         90 SQIAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (459)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987653

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.82  E-value=1.6e-20  Score=175.53  Aligned_cols=98  Identities=24%  Similarity=0.501  Sum_probs=93.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-C
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLG-N   82 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G-~   82 (217)
                      +|++++|+||++||.+|+.+|.+||..+|.+|-..+| +|+..|||+||.+.|+...+++.||-.||+.|+.+|.+|| +
T Consensus       355 dPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g  433 (939)
T KOG0049|consen  355 DPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKG  433 (939)
T ss_pred             CccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccc
Confidence            5789999999999999999999999999999999999 9999999999999999999999999999999999999999 8


Q ss_pred             chhhhhccCCCCCHHHHHHH
Q 047269           83 RWSLIAGRVPGRTDNQVKNH  102 (217)
Q Consensus        83 ~W~~Ia~~lpgRT~~q~k~R  102 (217)
                      +|.+||..||+||..|...|
T Consensus       434 ~WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  434 NWAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             hHHHHHHHccccchhHHHHH
Confidence            99999999999999554443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=4.2e-18  Score=159.57  Aligned_cols=105  Identities=25%  Similarity=0.528  Sum_probs=97.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---CCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-C
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGR---GQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLG-N   82 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G-~   82 (217)
                      ++...||+|||.+|+.+|+....   .+|.+|-..|+ ||+..|...||...|+|.+++|+||.+||.+|+.+|.+|| .
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k  381 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK  381 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence            45678999999999999998754   38999999999 9999999999999999999999999999999999999999 5


Q ss_pred             chhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269           83 RWSLIAGRVPGRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        83 ~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~  112 (217)
                      .|.+|-..+|||++.|||.||.+.|....+
T Consensus       382 dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  382 DWAKVRQAVPNRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             chhhHHHhcCCccHHHHHHHHHHHHHHhhc
Confidence            699999999999999999999999876554

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.73  E-value=3e-18  Score=116.69  Aligned_cols=60  Identities=42%  Similarity=0.882  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHH
Q 047269           12 WTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLI   73 (217)
Q Consensus        12 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L   73 (217)
                      ||+|||++|+.+|..||. +|..||+.|| .|++.+|+.||.++|.|.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999997 9999999998 99999999999999999999999999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=8.3e-17  Score=147.70  Aligned_cols=105  Identities=30%  Similarity=0.635  Sum_probs=100.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSL   86 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~   86 (217)
                      ++.|.|+.-||+.|..+|.+||.+.|.+||+.++ ..+++||+.||..+|+|.+++..|+.+||++|+.+.......|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5788999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           87 IAGRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        87 Ia~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      ||..| ||+++||-.||..++-...+.
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            99999 999999999999998765543

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.63  E-value=4.1e-16  Score=145.32  Aligned_cols=106  Identities=29%  Similarity=0.510  Sum_probs=101.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWS   85 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~   85 (217)
                      ..+.|.|+..||+.|..+|+.||..+|..||..++ .|+++||+.||.++++|.++++.|+.+||..|+.+..++|..|+
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ws   95 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS   95 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhh
Confidence            46889999999999999999999999999999998 79999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269           86 LIAGRVPGRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        86 ~Ia~~lpgRT~~q~k~Rw~~~l~k~~~  112 (217)
                      .||..+++||..+|.+||...+....+
T Consensus        96 tia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          96 TIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999988877655

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.58  E-value=2.1e-15  Score=141.93  Aligned_cols=104  Identities=28%  Similarity=0.524  Sum_probs=93.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCC--CCCCCCCHHHHHHHHHHHH-------
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN--VKHGEFTEEEENLIIRLHN-------   78 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~--~~~~~WT~eED~~L~~lv~-------   78 (217)
                      ++|.||+||++.|..+|..+|. +|..|++.||  |.+..|++||+++....  .+++.||.||.++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            7999999999999999999997 9999999998  99999999999999887  5899999999999999995       


Q ss_pred             Hh-------------------CCchhhhhccCCCCCHHHHHHHHHHHhhHHhcCc
Q 047269           79 LL-------------------GNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGIN  114 (217)
Q Consensus        79 ~~-------------------G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~~  114 (217)
                      ++                   +-+|+.|++.+.+|+..|||-+|+.++......+
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~  514 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK  514 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence            33                   1259999999999999999999999997765443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.53  E-value=2.8e-15  Score=97.86  Aligned_cols=48  Identities=42%  Similarity=0.754  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      |++||+|||++|+++|.+||.++|..||..||.+||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999679999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.50  E-value=2.2e-14  Score=93.56  Aligned_cols=46  Identities=35%  Similarity=0.679  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-hhhhhccCC-CCCHHHHHHHHHHHh
Q 047269           62 HGEFTEEEENLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL  107 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~~-W~~Ia~~lp-gRT~~q~k~Rw~~~l  107 (217)
                      +++||++||++|+++|.+||.. |..||..|| +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.38  E-value=4.8e-13  Score=90.91  Aligned_cols=46  Identities=39%  Similarity=0.728  Sum_probs=39.8

Q ss_pred             CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           65 FTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        65 WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      ||.+||++|+.+|.+||.+|..||+.|+.||+.+|++||+..|++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~   46 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPK   46 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTT
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCccc
Confidence            9999999999999999999999999997799999999999966543

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.33  E-value=1.9e-12  Score=110.38  Aligned_cols=68  Identities=21%  Similarity=0.412  Sum_probs=57.7

Q ss_pred             ccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC-CCCCHHHHHHHHHHHhhHHhcCc
Q 047269           39 TGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRV-PGRTDNQVKNHWNTHLCKKLGIN  114 (217)
Q Consensus        39 ~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~l-pgRT~~q~k~Rw~~~l~k~~~~~  114 (217)
                      ++ +|++.-|.       ++.+++++||+|||++|+++|++|| .+|..||+.+ ++||+.|||.||.++|++.+.+.
T Consensus        10 ~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg   79 (249)
T PLN03212         10 VS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG   79 (249)
T ss_pred             CC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC
Confidence            45 56555442       3578899999999999999999999 6899999998 69999999999999998877654

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.32  E-value=3.3e-12  Score=81.69  Aligned_cols=47  Identities=47%  Similarity=0.854  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhh
Q 047269           62 HGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~  108 (217)
                      +++||++||.+|+.++..|| .+|..||..||+||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.24  E-value=5.8e-12  Score=80.53  Aligned_cols=48  Identities=42%  Similarity=0.866  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccC
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      +++||++||.+|+.++..||..+|..||..++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            57899999999999999999559999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.21  E-value=3e-11  Score=76.02  Aligned_cols=44  Identities=39%  Similarity=0.769  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           64 EFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        64 ~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      +||.+|+..|+.++..|| .+|..||..|++||+.+|++||..++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.17  E-value=2.2e-11  Score=104.66  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=51.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHHhhHHhcCc
Q 047269           59 NVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP-GRTDNQVKNHWNTHLCKKLGIN  114 (217)
Q Consensus        59 ~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRT~~q~k~Rw~~~l~k~~~~~  114 (217)
                      .+.+|+||.|||.+|+++|++|| ++|..||+.++ +|++.+||-||.++|++.+.+.
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg   63 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRG   63 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCC
Confidence            34579999999999999999999 57999999998 9999999999999999887654

>PLN03091 hypothetical protein; Provisional

Probab=99.16  E-value=2.9e-11  Score=110.32  Aligned_cols=57  Identities=19%  Similarity=0.380  Sum_probs=51.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC-CCCCHHHHHHHHHHHhhHHhcC
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRV-PGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~l-pgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      +..+++++||+|||++|+++|.+|| .+|..||+.+ ++|++.|||.||.++|++.+.+
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkK   67 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR   67 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccC
Confidence            3578899999999999999999999 5799999988 5999999999999999877654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.11  E-value=4.8e-11  Score=75.07  Aligned_cols=45  Identities=44%  Similarity=0.852  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269           11 LWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus        11 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      +||++||..|+.++..||.++|..||..++ +|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999669999999999 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.99  E-value=6e-10  Score=105.45  Aligned_cols=109  Identities=23%  Similarity=0.289  Sum_probs=89.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-----------------------CCcchhhccccccccccccchhhhhccCCCC-CC
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGR-----------------------GQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV-KH   62 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~-----------------------~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~-~~   62 (217)
                      ++-+.|+++||+.|...|..|-.                       +-|+.|...|| .|+...++.+-++...|-- .+
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccccc
Confidence            44589999999999999976611                       12788889999 6999998875555555533 99


Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHHhcCcccc
Q 047269           63 GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQ  117 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~~~~~  117 (217)
                      |.||++|++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+++..-.+++..
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~  438 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGA  438 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCc
Confidence            99999999999999999999999999999 9999999999999987655444333

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.55  E-value=6.6e-09  Score=97.43  Aligned_cols=98  Identities=30%  Similarity=0.634  Sum_probs=87.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCC--CCCCCCCCHHHHHHHHHHHHHhC----
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSP--NVKHGEFTEEEENLIIRLHNLLG----   81 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p--~~~~~~WT~eED~~L~~lv~~~G----   81 (217)
                      .+|.||++|+..|..++..+|. .|..|.+.++  |-+..|++||++|...  .+++++|+.+|+.+|...|...-    
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhccCccccccccccccccccc-hhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            4789999999999999999997 9999999887  9999999999999988  68889999999999999887432    


Q ss_pred             ----CchhhhhccCCCCCHHHHHHHHHHHhh
Q 047269           82 ----NRWSLIAGRVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        82 ----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~  108 (217)
                          -.|..|+..+++|...+|+..+..+..
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  397 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLIS  397 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence                359999999999999999988876553

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.30  E-value=5.8e-07  Score=60.77  Aligned_cols=49  Identities=16%  Similarity=0.351  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCc---chhhccccccc-cccccchhhhhcc
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQW---NRIHKVTGLKR-CGKSCRLRWLNYL   56 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W---~~Ia~~~~~~R-t~~qcr~Rw~~~l   56 (217)
                      ++-.||+||..+++++|+.+|.|+|   +.|++.|+..| |..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999999   99999887556 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.28  E-value=4.6e-07  Score=82.78  Aligned_cols=50  Identities=26%  Similarity=0.551  Sum_probs=46.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      .+-...||++|+-+|+++++.||-|||..||.+|| .|+..+|+++|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            45677899999999999999999999999999999 999999999998865

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.94  E-value=1.3e-05  Score=73.41  Aligned_cols=49  Identities=24%  Similarity=0.495  Sum_probs=45.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           59 NVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        59 ~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      .+-...||.+|+-+|++++..|| ++|..||.++..||..+|+.+|.++.
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            44567899999999999999999 99999999999999999999998765

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.89  E-value=3.5e-05  Score=52.09  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ch---hhhhccCC-CC-CHHHHHHHHHHHh
Q 047269           62 HGEFTEEEENLIIRLHNLLGN-RW---SLIAGRVP-GR-TDNQVKNHWNTHL  107 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~-~W---~~Ia~~lp-gR-T~~q~k~Rw~~~l  107 (217)
                      +-.||+||..++++++..+|. +|   ..|++.|. .| |..||+.+...+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            447999999999999999995 99   99999883 45 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.72  E-value=2.1e-05  Score=73.43  Aligned_cols=54  Identities=26%  Similarity=0.439  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           60 VKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        60 ~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      ++.|.|+..||+.|.-+|.+|| +.|+.|++.++-.|+.||++||...+.+.+++
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~   59 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKK   59 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhh
Confidence            4678999999999999999999 67999999999999999999999998876654

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.69  E-value=0.00012  Score=61.30  Aligned_cols=96  Identities=21%  Similarity=0.393  Sum_probs=70.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhccccc--cccccccchhhhhccC-CCC--------------------CCCCCCH
Q 047269           11 LWTQEEDRILLEYIRVHGRGQWNRIHKVTGL--KRCGKSCRLRWLNYLS-PNV--------------------KHGEFTE   67 (217)
Q Consensus        11 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~--~Rt~~qcr~Rw~~~l~-p~~--------------------~~~~WT~   67 (217)
                      +|++++|-.|+.+|..-.  +-..|+..+..  .-|...+.+||+..|- |.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998765  56777765442  4556677889987652 222                    3568999


Q ss_pred             HHHHHHHHHHHHhCC---chhhh----hccC-CCCCHHHHHHHHHHHhh
Q 047269           68 EEENLIIRLHNLLGN---RWSLI----AGRV-PGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        68 eED~~L~~lv~~~G~---~W~~I----a~~l-pgRT~~q~k~Rw~~~l~  108 (217)
                      +|+++|.........   .+.+|    +..| ++||+.++.++|+.+.+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq  127 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ  127 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence            999999997655442   46666    2234 88999999999995543

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.68  E-value=1.8e-05  Score=73.08  Aligned_cols=47  Identities=26%  Similarity=0.634  Sum_probs=43.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY   55 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   55 (217)
                      .....||.+|..+|+++|+.||. +|.+||.++| +|+..||..|+.+.
T Consensus       277 ~~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         277 IRDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             cccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            36679999999999999999998 9999999999 99999999999764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.50  E-value=5.9e-05  Score=71.19  Aligned_cols=48  Identities=31%  Similarity=0.689  Sum_probs=44.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY   55 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   55 (217)
                      .--++.||.+|.-+|+++|+.||. +|.+||.++| +|+..||..++.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            345788999999999999999998 9999999999 99999999998763

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.46  E-value=0.00014  Score=58.71  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CC----chhhhhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           61 KHGEFTEEEENLIIRLHNLL---GN----RWSLIAGRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~---G~----~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      ....||.|||.+|.+.|..|   |+    -...++..| +||+.+|.-||+..+|+.+..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45789999999999999887   32    388999999 999999999999999987754

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.37  E-value=0.00019  Score=51.82  Aligned_cols=53  Identities=30%  Similarity=0.474  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHHH------hC--C------chhhhhccC----CCCCHHHHHHHHHHHhhHHhcCcc
Q 047269           63 GEFTEEEENLIIRLHNL------LG--N------RWSLIAGRV----PGRTDNQVKNHWNTHLCKKLGINK  115 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~------~G--~------~W~~Ia~~l----pgRT~~q~k~Rw~~~l~k~~~~~~  115 (217)
                      ..||.+|...|+.++..      ++  +      -|..||..|    ..||+.||+++|.++.+.....+.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~   72 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD   72 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999999877      21  1      399999987    479999999999998766654443

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.34  E-value=0.00019  Score=66.39  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 047269           63 GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTH  106 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~  106 (217)
                      ..||.+|..+|++.++.||..|.+||.++.+||..||--||..+
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            48999999999999999999999999999999999999999765

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.32  E-value=0.00031  Score=66.41  Aligned_cols=47  Identities=19%  Similarity=0.360  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           61 KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      .++.||.+|..+|+++|..||..|.+||.++.+||..||-.+|..+-
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LP  298 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLP  298 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcC
Confidence            35689999999999999999999999999999999999999998653

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.91  E-value=0.0016  Score=45.18  Aligned_cols=50  Identities=18%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-------C--chhhhhccCC-CCCHHHHHHHHHHHhhHHh
Q 047269           62 HGEFTEEEENLIIRLHNLLG-------N--RWSLIAGRVP-GRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G-------~--~W~~Ia~~lp-gRT~~q~k~Rw~~~l~k~~  111 (217)
                      +.+||.+||..|+..|.++.       +  -|..+++.-| .+|-...|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45899999999999997653       1  1999999887 8999999999988876543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.87  E-value=0.00042  Score=61.56  Aligned_cols=49  Identities=22%  Similarity=0.531  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccC
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      ---.|+..|+-+|+++.+..|-|+|..||..+| .|+...|+.+|..++.
T Consensus        62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            345699999999999999999999999999999 9999999999987654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.79  E-value=0.00093  Score=46.31  Aligned_cols=52  Identities=27%  Similarity=0.501  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------C--CcchhhccccccccccccchhhhhccCCCC
Q 047269            9 KGLWTQEEDRILLEYIRVHGR------G--QWNRIHKVTGLKRCGKSCRLRWLNYLSPNV   60 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~------~--~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~   60 (217)
                      +-+||+|||+.|++.|..+..      |  =|..+++.-++.+|..+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            458999999999999976532      2  299999876667888889999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.79  E-value=0.0014  Score=53.64  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-------chhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269           60 VKHGEFTEEEENLIIRLHNLLGN-------RWSLIAGRVPGRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        60 ~~~~~WT~eED~~L~~lv~~~G~-------~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~  112 (217)
                      ..+..||.|+|.+|.+.|..|+.       -...++..| +||..+|..||+..+++.+.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            34678999999999999988873       266677788 99999999999999997653

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.72  E-value=0.00066  Score=48.93  Aligned_cols=47  Identities=30%  Similarity=0.663  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C--C-----CCcchhhccc---cccccccccchhhhhc
Q 047269            9 KGLWTQEEDRILLEYIRV--H----G--R-----GQWNRIHKVT---GLKRCGKSCRLRWLNY   55 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~--~----g--~-----~~W~~Ia~~~---~~~Rt~~qcr~Rw~~~   55 (217)
                      +..||.+|...|+.++..  +    +  .     .-|..||..|   |..|++.||+.+|.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            357999999999999876  1    1  1     1499999765   4579999999999873

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.70  E-value=0.00075  Score=54.56  Aligned_cols=49  Identities=31%  Similarity=0.674  Sum_probs=42.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-C-----CcchhhccccccccccccchhhhhccC
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGR-G-----QWNRIHKVTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~-~-----~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      .+...||.|||.+|.+.|-+|=. |     ...+|++.++  ||+..|.-||..++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VR   56 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHH
Confidence            46778999999999999998822 2     5899999987  999999999998775

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.45  E-value=0.0098  Score=60.94  Aligned_cols=99  Identities=15%  Similarity=0.272  Sum_probs=76.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccch-------hhhhc----------------------------
Q 047269           11 LWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRL-------RWLNY----------------------------   55 (217)
Q Consensus        11 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~-------Rw~~~----------------------------   55 (217)
                      .||.-+=..++.+..+||..+-..||..|+ +++...++.       ||...                            
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588888888899999999999999999997 788877652       11110                            


Q ss_pred             --------------c-CCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhc------------cCCCCCHHHHHHHHHHHh
Q 047269           56 --------------L-SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAG------------RVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        56 --------------l-~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~------------~lpgRT~~q~k~Rw~~~l  107 (217)
                                    + .+..++..+|.+||..|+-++.+|| ++|..|-.            ++..||+..+..|...++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                          0 1222344699999999999999999 78999833            235799999999999988


Q ss_pred             hHH
Q 047269          108 CKK  110 (217)
Q Consensus       108 ~k~  110 (217)
                      +-.
T Consensus       985 ~~~  987 (1033)
T PLN03142        985 RLI  987 (1033)
T ss_pred             HHH
Confidence            543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.30  E-value=0.0038  Score=55.60  Aligned_cols=47  Identities=26%  Similarity=0.451  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhh
Q 047269           62 HGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~  108 (217)
                      -..|+..|+.+|+++....| ++|..||.++..|+...||.+|..+.-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34699999999999999999 999999999999999999999987653

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.27  E-value=0.0077  Score=42.46  Aligned_cols=48  Identities=29%  Similarity=0.513  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----C-------------chhhhhccC-----CCCCHHHHHHHHHHHhhH
Q 047269           62 HGEFTEEEENLIIRLHNLLG----N-------------RWSLIAGRV-----PGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G----~-------------~W~~Ia~~l-----pgRT~~q~k~Rw~~~l~k  109 (217)
                      ...||.+|...|+++|.+|.    +             -|..|+..|     +.||..+|+.+|..+...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999873    1             299998866     369999999999987643

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.98  E-value=0.003  Score=44.61  Aligned_cols=49  Identities=29%  Similarity=0.480  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------------CCcchhhcccc----ccccccccchhhhhcc
Q 047269            8 KKGLWTQEEDRILLEYIRVHGR----------------GQWNRIHKVTG----LKRCGKSCRLRWLNYL   56 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~----------------~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l   56 (217)
                      ++..||++|.+.|+++|.+|..                .-|..|+..+.    ..|+..||+..|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999988831                14999997552    2699999999998753

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.71  E-value=0.0035  Score=51.27  Aligned_cols=49  Identities=27%  Similarity=0.548  Sum_probs=40.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC------CcchhhccccccccccccchhhhhccC
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRG------QWNRIHKVTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~------~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      .+...||.|+|.+|.+.|-.|+..      -...++..+.  |++.+|..||..++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            467899999999999999988652      3666677776  999999999966554

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=94.42  E-value=0.051  Score=49.72  Aligned_cols=82  Identities=18%  Similarity=0.309  Sum_probs=61.4

Q ss_pred             CcchhhccccccccccccchhhhhccCCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCchh
Q 047269           31 QWNRIHKVTGLKRCGKSCRLRWLNYLSPN-------------------------VKHGEFTEEEENLIIRLHNLLGNRWS   85 (217)
Q Consensus        31 ~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~-------------------------~~~~~WT~eED~~L~~lv~~~G~~W~   85 (217)
                      .|.-+.-..+ .|...-...||.+..++.                         ++-..||.+|-+.|..+.+.|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4666654444 566666666666553221                         22356999999999999999999999


Q ss_pred             hhhcc-----CCC-CCHHHHHHHHHHHhhHHhcC
Q 047269           86 LIAGR-----VPG-RTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        86 ~Ia~~-----lpg-RT~~q~k~Rw~~~l~k~~~~  113 (217)
                      .||.+     ++. ||-..+|.||+...++.+..
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA  187 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA  187 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence            99987     655 99999999999888776653

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.25  E-value=0.08  Score=40.92  Aligned_cols=52  Identities=23%  Similarity=0.377  Sum_probs=40.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----chhhhhcc------------CCCCCHHHHHHHHHHHhhHH
Q 047269           59 NVKHGEFTEEEENLIIRLHNLLGN----RWSLIAGR------------VPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        59 ~~~~~~WT~eED~~L~~lv~~~G~----~W~~Ia~~------------lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      +.++..||++||.-|+-++.+||-    .|..|-..            +..||+..+..|...+++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            556778999999999999999995    79888543            24699999999999998653

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.51  E-value=0.15  Score=46.04  Aligned_cols=52  Identities=21%  Similarity=0.267  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCchhhhhccC----CCCCHHHHHHHHHHHhhHHhcC
Q 047269           62 HGEFTEEEENLIIRLHNLL----------GNRWSLIAGRV----PGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~----------G~~W~~Ia~~l----pgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      ...|+.+|-..||++..+.          +..|..||+.+    .-||+.+|+++|.++.++....
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~  119 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKE  119 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3689999999999998653          24599999955    4599999999999987665443

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=93.25  E-value=0.14  Score=46.90  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           63 GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      .+||.+|-++..++...+|..++.||..+|.|...||+.+|.+--
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Ee  410 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEE  410 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHh
Confidence            479999999999999999999999999999999999999997543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.15  E-value=0.38  Score=34.76  Aligned_cols=46  Identities=30%  Similarity=0.459  Sum_probs=34.9

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------chhhhhccC---C--CCCHHHHHHHHHHHhhH
Q 047269           64 EFTEEEENLIIRLHNLL---GN----------RWSLIAGRV---P--GRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        64 ~WT~eED~~L~~lv~~~---G~----------~W~~Ia~~l---p--gRT~~q~k~Rw~~~l~k  109 (217)
                      .||++++..|++++.+.   |+          .|..|+..|   +  ..|..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998653   21          299998876   2  34789999999876544

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.22  E-value=0.2  Score=38.68  Aligned_cols=47  Identities=30%  Similarity=0.495  Sum_probs=35.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCcchhhcccc-----------ccccccccchhh
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGR---GQWNRIHKVTG-----------LKRCGKSCRLRW   52 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~-----------~~Rt~~qcr~Rw   52 (217)
                      ..++..||.+||.-|+-++.+||-   |.|..|...+-           ..||+..+..|-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~  106 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRC  106 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHH
Confidence            667889999999999999999999   89999987553           146666555554

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=90.82  E-value=0.17  Score=46.25  Aligned_cols=62  Identities=16%  Similarity=0.330  Sum_probs=49.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc--cCCC------CCCCCCCHHHHHHH
Q 047269           10 GLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY--LSPN------VKHGEFTEEEENLI   73 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~--l~p~------~~~~~WT~eED~~L   73 (217)
                      -+||.+|-++..+++...|. ++..||..+| +|..+|++..|.+-  .+|.      ..+-|+..+|...|
T Consensus       366 ~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~  435 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKL  435 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhH
Confidence            47999999999999999998 9999999999 99999999988753  2231      12446777775443

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=90.27  E-value=1.2  Score=41.68  Aligned_cols=48  Identities=17%  Similarity=0.220  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhh
Q 047269           61 KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~  108 (217)
                      -...||.||-.++-+++..||.+..+|-+.||.|+-..+...|+..-+
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK  233 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence            346799999999999999999999999999999999999999886543

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=86.31  E-value=0.88  Score=32.97  Aligned_cols=24  Identities=38%  Similarity=0.815  Sum_probs=14.3

Q ss_pred             CCCCCCCCHHHHHHH--------HHHHHHhCC
Q 047269            6 EYKKGLWTQEEDRIL--------LEYIRVHGR   29 (217)
Q Consensus         6 ~~kkg~WT~eED~~L--------~~~v~~~g~   29 (217)
                      .--.|.||+|+|+.|        .+++++||.
T Consensus        44 ~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG~   75 (87)
T PF11626_consen   44 DNMPGIWTPEDDEMLRSGDKDDIERLIKKHGE   75 (87)
T ss_dssp             TT-TT---HHHHHHHTS--HHHHHHHHHHH-H
T ss_pred             CCCCCCcCHHHHHHHHcCCHHHHHHHHHHhCH
Confidence            345889999999999        356677774

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=86.11  E-value=1.6  Score=28.02  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           68 EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        68 eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      +++..++.++-..|-.|.+||..+ |.|...|+.+....+++
T Consensus        13 ~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   13 ERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            566778888888889999999999 99999999998776543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>smart00595 MADF subfamily of SANT domain

Probab=84.94  E-value=1.1  Score=31.81  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=22.2

Q ss_pred             hhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           84 WSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        84 W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      |..||..| |-|..+|+.+|+++-...
T Consensus        30 W~~Ia~~l-~~~~~~~~~kw~~LR~~y   55 (89)
T smart00595       30 WEEIAEEL-GLSVEECKKRWKNLRDRY   55 (89)
T ss_pred             HHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence            99999999 559999999999875443

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=84.43  E-value=0.61  Score=46.05  Aligned_cols=44  Identities=11%  Similarity=0.269  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhh
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLN   54 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~   54 (217)
                      ...||+.|-.+..+++-.|.+ ++-.|+++++ ++|..||-+-|+.
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~K-DF~~v~km~~-~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYSK-DFIFVQKMVK-SKTVAQCVEYYYT  662 (907)
T ss_pred             cccccHHHHHHHHHHHHHhcc-cHHHHHHHhc-cccHHHHHHHHHH
Confidence            347999999999999999998 9999999999 9999999887754

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=84.39  E-value=0.72  Score=41.52  Aligned_cols=46  Identities=28%  Similarity=0.543  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHHHHHHHHh----CCC-----Ccchhhcc---ccccccccccchhhhhc
Q 047269           10 GLWTQEEDRILLEYIRVH----GRG-----QWNRIHKV---TGLKRCGKSCRLRWLNY   55 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~----g~~-----~W~~Ia~~---~~~~Rt~~qcr~Rw~~~   55 (217)
                      ..|+.+|-..|+++....    ..+     -|..||+.   .|..|++.||+.+|.+.
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl  112 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL  112 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            689999999999987432    112     59999973   34469999999999874

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=81.57  E-value=0.96  Score=28.35  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhh
Q 047269           15 EEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLN   54 (217)
Q Consensus        15 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~   54 (217)
                      +=|.+|+.+++.-|...|..||+.+|  =+...|..|+.+
T Consensus         3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r   40 (42)
T PF13404_consen    3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR   40 (42)
T ss_dssp             HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence            34889999999999989999999998  788888888754

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-22
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		9e-22
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-20
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-20
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		2e-20
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		9e-18
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-14
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-09
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-08
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-04
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		3e-04
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		4e-04
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		5e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 69/100 (69%), Gaps = 3/100 (3%)
Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           KG WT+EED+ ++E ++ +G  QW  I K + G  R GK CR RW N+L+P VK   +TE
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
           EE+ +I   H +LGNRW+ IA  +PGRTDN VKNHWN+ +
Sbjct: 65  EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTI 104

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 6   EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNYLSPNVKHGE 64
           E  KG WT+EED+ ++E+++ +G  +W+ I K + G  R GK CR RW N+L+P VK   
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 81
Query: 65  FTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
           +TEEE+ +I + H  LGNRW+ IA  +PGRTDN VKNHWN+ +
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTM 124

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           KG WT+EED+ +++ ++ +G  +W+ I K + G  R GK CR RW N+L+P VK   +TE
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
           EE+ +I + H  LGNRW+ IA  +PGRTDN +KNHWN+ +
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 155

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           KG WT+EED+ +++ ++ +G  +W+ I K + G  R GK CR RW N+L+P VK   +TE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
           EE+ +I + H  LGNRW+ IA  +PGRTDN +KNHWN+ +
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           KG WT+EED+ +++ ++ +G  +W+ I K + G  R GK CR RW N+L+P VK   +TE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
           EE+ +I + H  LGNRW+ IA  +PGRTDN +KNHWN+ +
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
           KG +T+ ED ++ EY++ +G   W RI       R  K CR RW N+L P V    +T E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 69  EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLC 108
           E+  I R +  LG++WS+IA  +PGRTDN +KN WN+ + 
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSIS 100

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           KK  +T EED +L   +  HG   W  I   T   R  + CR RW NYL+P++ H  +T 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHG-SDWKMI-AATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNT 105
           EE+ L+++     G +W++IA   PGRTD  +KN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 60  VKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
           VK   +TEEE+ +I + H  LGNRW+ IA  +PGRTDN +KNHWN+ +
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 48

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 60  VKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
           VK   +TEEE+ ++ + H  LGNRW+ IA  +PGRTDN +KNHWN+ +
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 50

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 13  TQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENL 72
           T+EED  L + +  +G   W RI ++  + R  + CR RW NY++P ++   ++ EE+ L
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 73  IIRLHNLLGNRWSLIAGRVPGRTDNQVKNHW 103
           + + +   G +W+ I+  +  R+DN ++N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 9  KGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNYLSP 58
          KG WT+EED+ ++E ++ +G  +W+ I K + G  R GK CR RW N+L+P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 9  KGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNYLSP 58
          KG WT+EED+ L++ ++ +G  +W+ I K + G  R GK CR RW N+L+P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 11 LWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFT 66
          +W   ED IL   +  +G+ QW+RI  +   ++  K C+ RW  +L P++K  E++
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 9  KGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNYLSP 58
          KG WT+EED+ +++ ++ +G  +W+ I K + G  R GK CR RW N+L+P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-57
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	3e-56
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	4e-55
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-15
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-50
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-06
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	7e-49
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-48
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-28
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-04
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-24
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-07
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-20
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-16
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	3e-14
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	3e-08
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	6e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	4e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	7e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	8e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	4e-04
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	7e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	7e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-04
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	7e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	5e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  176 bits (449), Expect = 3e-57
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
           KG +T+ ED ++ EY++ +G   W RI       R  K CR RW N+L P V    +T E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 69  EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKKKFVSSSKTQ 128
           E+  I R +  LG++WS+IA  +PGRTDN +KN WN+ + K++  N   K+  +     +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 129 AQTQS 133
            +   
Sbjct: 121 RKAAD 125

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  173 bits (440), Expect = 3e-56
 Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 6   EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEF 65
           E  KG WT+EED+ +++ ++ +G  +W+ I K     R GK CR RW N+L+P VK   +
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 66  TEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
           TEEE+ +I + H  LGNRW+ IA  +PGRTDN +KNHWN+ + +K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  170 bits (434), Expect = 4e-55
 Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
            KG WT+EED+ ++E+++ +G  +W+ I K     R GK CR RW N+L+P VK   +TE
Sbjct: 26  NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 84

Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
           EE+ +I + H  LGNRW+ IA  +PGRTDN VKNHWN+ + +K+
Sbjct: 85  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 69.5 bits (171), Expect = 1e-15
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 43  RCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR-WSLIAGRVPGRTDNQVKN 101
           R    C+ RW   L+P +  G +T+EE+  +I      G + WS IA  + GR   Q + 
Sbjct: 8   RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67

Query: 102 HWNTHL 107
            W+ HL
Sbjct: 68  RWHNHL 73

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  158 bits (403), Expect = 2e-50
 Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
           KK  +T EED +L   +  HG   W  I       R  + CR RW NYL+P++ H  +T 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67

Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKK 119
           EE+ L+++     G +W++IA   PGRTD  +KN W T    KLGI + Q+ 
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTIS-NKLGIPQTQQM 118

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 58  PNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLC 108
              K  +FT EE+ ++ R     G+ W +IA   P R   Q ++ W  +L 
Sbjct: 7   KAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  154 bits (392), Expect = 7e-49
 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 9   KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEE 68
           K  +T+EED  L + +  +G   W RI ++    R  + CR RW NY++P ++   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 69  EENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINK 115
           E+ L+ + +   G +W+ I+  +  R+DN ++N W      +    K
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  154 bits (392), Expect = 3e-48
 Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
            KG WT+EED+ +++ ++ +G  +W+ I K     R GK CR RW N+L+P VK   +TE
Sbjct: 57  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 115

Query: 68  EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
           EE+ +I + H  LGNRW+ IA  +PGRTDN +KNHWN+ + +K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  103 bits (260), Expect = 2e-28
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTE 67
            K  WT+EED  L + +  +G   W  I       R    C+ RW   L+P +  G +T+
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTK 63

Query: 68  EEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL 107
           EE+  +I+L    G  RWS+IA  + GR   Q +  W+ HL
Sbjct: 64  EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 59  NVKHGEFTEEEENLIIRLHNLLGNR-WSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
           ++    +T EE+  + +L    G   W +IA  +P RTD Q ++ W   L  +L
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPEL 56

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 90.8 bits (226), Expect = 2e-24
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 5  NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGE 64
          +  K G+W   ED IL   +  +G+ QW+RI  +   ++  K C+ RW  +L P++K  E
Sbjct: 5  SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 65 FTEEEE 70
          ++    
Sbjct: 64 WSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 57  SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL 107
             + K G +   E+ ++       G N+WS IA  +  ++  Q K  W   L
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 79.1 bits (196), Expect = 3e-20
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSP 58
           KG WT+EED+ L++ ++ +G  +W+ I K     R GK CR RW N+L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 69.1 bits (170), Expect = 2e-16
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRI-HKVTGLKRCGKSCRLRWLNYLSP 58
           K  WT+EED  L + +  +G   W  I + +    R    C+ RW   L+P
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN--RTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 60  VKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLC 108
           +    +T EE+  + +L    G + W +IA  +P RTD Q ++ W   L 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 64.2 bits (157), Expect = 3e-14
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRI-HKVTGLKRCGKSCRLRWLNYLSP 58
           K  WT EED  L   +R  G+  W  +        R  + C+ RWL  LS 
Sbjct: 7  GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN--RTDQQCQYRWLRVLSG 56

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 46.8 bits (112), Expect = 6e-08
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 57  SPNVKHGEFTEEEENLIIRLHNLLGNR-WSLIAGRVPGRTDNQVKNHWNTHLCKK 110
           S +    ++T EE+  +  L    G + W  +A   P RTD Q +  W   L   
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.8 bits (119), Expect = 7e-09
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 58  PNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
            + K  E++ EEE  ++ L  L+  +W  IA  + GRT  Q   H+   L
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIA-PIIGRTAAQCLEHYEFLL 53

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGE 64
          KK  W++EE+  LL   ++    QW  I  + G  R    C   +   L    +   
Sbjct: 8  KKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDS 61

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLK-RCGKSCRLRWLN 54
          K+  W  EED+ L   +R +G G W++I        R     + RW  
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 17/144 (11%)

Query: 3   AENEYKKGLWTQEEDRILLEYIRVHGRGQ-----WNRIHKVTGLKRCGKSCRLRWLNYLS 57
           A   + K  +T EED  +L+ +R +   +     ++ I         G S R R+  YLS
Sbjct: 2   ALPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLS 60

Query: 58  PNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQ 117
             +++    ++   L+       GN                +K  ++    +   +    
Sbjct: 61  KRLEYVYEVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSAD--EDYTLAIAV 109

Query: 118 KKKFVSSSKTQAQTQSSRIIKDDN 141
           KK+F              +I D++
Sbjct: 110 KKQFYRDLFQIDPDTGRSLITDED 133

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 3  AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLS 57
          +        WT +E+  LLE +   G G W  +       +  + C   ++ Y S
Sbjct: 2  SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFS 55

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 57  SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL 107
           S +     +T +EE  ++      G   W  +A ++  +T  + + H+  + 
Sbjct: 3   SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 44.8 bits (106), Expect = 6e-07
 Identities = 14/69 (20%), Positives = 29/69 (42%)

Query: 57  SPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKK 116
             +    ++T EE+ L  +     G RW+ I+  +  RT  QVK++   +   K+     
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 117 QKKKFVSSS 125
           ++     + 
Sbjct: 64  KETPNQKTG 72

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLK-RCGKSCRLRWLN 54
          K+  W  EED+ L   +R +G G W++I        R     + RW  
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY 55
          W  +E+ +L++     G G W  I    G  R  + CR  +L  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 42.2 bits (99), Expect = 7e-06
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 49  RLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLC 108
                +    N+    +TEEE     +     G  WS IA  V  +T +Q KN +  +  
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY-K 61

Query: 109 KKLGINKKQKKKFVSSSKTQAQTQSSR 135
           K+  +++  ++  +   K +   +  +
Sbjct: 62  KRQNLDEILQQHKLKMEKERNARRKKK 88

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 42.8 bits (100), Expect = 8e-06
 Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKV---TGLKRCGKSCRLRWLNYL------SP 58
            +  +T  E  +L+E +   G G+W  +          R     + +W   +        
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 59  NVKHGEFTEEEENLIIRLHNLLGNRWS 85
             +     +E  + ++          S
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSS 116

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLK-RCGKSCRLRWLN 54
          KK  WT EE   +   ++ +G G W  I K      R     + RW  
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 61  KHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVP--GRTDNQVKNHWNTHLCKKLGIN 114
           K  ++T EE   +       G   W+ I+   P   RT   +K+ W T   K+LG+N
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM--KRLGMN 55

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKV---TGLKRCGKSCRLRWLNYL------SP 58
           +  ++  E   L++ +   G G+W  +          R     + +W   +        
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 59 NVKHGEFTEEEENLIIRLHNLLGNRWS 85
            +     +E  N ++  H     +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLK-RCGKSCRLRWLN 54
          KK  WT EE   +   ++ +G G W  I K      R     + RW  
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 61  KHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVP--GRTDNQVKNHWNTHLCKKLGIN 114
           K  ++T EE   +       G   W+ I+   P   RT   +K+ W T   K+LG+N
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM--KRLGMN 64

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHKV---TGLKRCGKSCRLRWLNY-----LSPNVKHG 63
          ++  E   L+E +   G G+W  +          R     + +W        ++P  + G
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 64 EFTEEEENLIIR-LHNLLGNR 83
          E   ++    +   H     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 8   KKGLWTQEEDRILLEYIRVHGRGQWNRIHKV---TGLKRCGKSCRLRWLNYL------SP 58
            +  ++  E   L+E +   G G+W  +          R     + +W   +        
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 59  NVKHGEFTEEEENLIIRLHNLLGNRWS 85
             +     ++  + ++  H     +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 64  EFTEEE----ENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWN 104
            +T+ +    E  + +      + W  IA  VP ++       + 
Sbjct: 20  PWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 64

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 2  KAENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY 55
          K++       WT++E  +LLE + ++    WN++ +  G  R    C L +L  
Sbjct: 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 66  TEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHW 103
           TE+E  L++    +  + W+ ++  V  RT ++   H+
Sbjct: 22  TEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRW 52
            G +T EE   L E    HG   W  I    G  R   S + R 
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.88
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.86
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.82
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.77
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.77
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.76
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.75
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.74
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.74
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.74
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.74
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.72
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.71
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.7
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.69
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.68
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.68
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.66
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.66
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.65
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.64
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.64
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.64
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.63
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.63
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.61
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.6
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.6
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.36
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.54
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.52
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.51
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.51
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.5
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.49
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.47
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.46
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.45
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.17
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.43
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.43
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.41
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.4
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.37
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.36
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.36
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.32
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.29
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.19
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.13
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	99.1
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.02
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.98
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.98
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.89
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.87
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.86
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.78
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.74
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.67
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.62
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.51
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.45
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.39
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.34
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.31
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.28
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.16
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.45
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.15
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.95
2crg_A	70	Metastasis associated protein MTA3; transcription	97.93
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.91
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.82
2crg_A	70	Metastasis associated protein MTA3; transcription	97.76
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.75
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.5
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.48
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.45
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.39
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.14
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.21
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.91
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.31
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.96
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.78
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	94.17
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.92
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	83.67

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=7.9e-37  Score=229.97  Aligned_cols=105  Identities=47%  Similarity=0.859  Sum_probs=99.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWS   85 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~   85 (217)
                      ++++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269           86 LIAGRVPGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        86 ~Ia~~lpgRT~~q~k~Rw~~~l~k~~  111 (217)
                      .||+.|||||+++|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=1.4e-36  Score=229.66  Aligned_cols=104  Identities=28%  Similarity=0.519  Sum_probs=100.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIA   88 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia   88 (217)
                      ||+||+|||++|+++|..||.++|..||..|| +|++.||++||.++|+|.+++|+||+|||.+|+.+|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           89 GRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        89 ~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      +.|||||+++|++||+.++++....
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999886554

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=1e-35  Score=232.57  Aligned_cols=107  Identities=41%  Similarity=0.786  Sum_probs=102.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIA   88 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia   88 (217)
                      ||+||+|||++|+++|..||.++|..||..|| +|++.||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhhHHhcCccc
Q 047269           89 GRVPGRTDNQVKNHWNTHLCKKLGINKK  116 (217)
Q Consensus        89 ~~lpgRT~~q~k~Rw~~~l~k~~~~~~~  116 (217)
                      ++|||||+++|++||+.+|++.+.....
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~  108 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSN  108 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999998765443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1.2e-35  Score=231.13  Aligned_cols=106  Identities=48%  Similarity=0.862  Sum_probs=102.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR   83 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~   83 (217)
                      +|.+++|+||+|||++|+++|+.||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++
T Consensus        22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~  100 (128)
T 1h8a_C           22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  100 (128)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            5788999999999999999999999888999999999 999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           84 WSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        84 W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      |+.||+.|||||+++|++||+.+++++
T Consensus       101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C          101 WAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999998775

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=2.9e-35  Score=228.59  Aligned_cols=104  Identities=38%  Similarity=0.681  Sum_probs=100.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 047269            5 NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRW   84 (217)
Q Consensus         5 ~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W   84 (217)
                      +..++|+||+|||++|+++|..||. +|..||+.|+ +|++.||++||.++|+|.+++|+||.|||++|+++|.+||++|
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            4689999999999999999999998 9999999999 9999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           85 SLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        85 ~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      +.||+.|||||+++|++||+.++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988663

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=3.6e-33  Score=224.51  Aligned_cols=107  Identities=46%  Similarity=0.843  Sum_probs=102.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR   83 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~   83 (217)
                      +|.+++|+||+|||++|+++|..||.++|..||..|+ +|++.||+.||.++|+|.+++++||++||.+|++++.+||++
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~  131 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  131 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence            5778999999999999999999999878999999999 999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269           84 WSLIAGRVPGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        84 W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~  111 (217)
                      |+.||++|||||+++|++||+.++++++
T Consensus       132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999987753

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=2.3e-32  Score=219.73  Aligned_cols=104  Identities=33%  Similarity=0.676  Sum_probs=61.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGN-RW   84 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~-~W   84 (217)
                      .+++|+||+|||++|+++|++||.++|..||+.|| +|++.||++||.++|+|.+++++||+|||++|+.+|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            47899999999999999999999889999999999 99999999999999999999999999999999999999995 79


Q ss_pred             hhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           85 SLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        85 ~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      ..||..|||||+.||++||.++|.+.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence            99999999999999999999988654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=7.2e-24  Score=148.33  Aligned_cols=67  Identities=30%  Similarity=0.696  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHH
Q 047269            3 AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEE   70 (217)
Q Consensus         3 ~~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED   70 (217)
                      ..+.+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            35679999999999999999999999779999999999 99999999999999999999999999987

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.86  E-value=1.2e-22  Score=157.61  Aligned_cols=75  Identities=32%  Similarity=0.665  Sum_probs=51.3

Q ss_pred             hhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           35 IHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        35 Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      ||+.|+ +|++.||+.||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|||||+.||++||.++|.+.
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   76 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE   76 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence            789998 99999999999999999999999999999999999999995 7999999999999999999999988653

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.82  E-value=1.3e-20  Score=158.62  Aligned_cols=106  Identities=20%  Similarity=0.319  Sum_probs=92.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----cchhhccccccccccccchhhhhccCCCCC-----------------
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQ-----WNRIHKVTGLKRCGKSCRLRWLNYLSPNVK-----------------   61 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~-----------------   61 (217)
                      .+.+++++||+|||+.|+++|+++|..+     |..||+.|+ |||+.||+.||..+|.+.++                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3568899999999999999999998742     999999999 99999999999999999886                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 047269           62 ------------HGEFTEEEENLIIRLHNL-L--------------------------------GN--------------   82 (217)
Q Consensus        62 ------------~~~WT~eED~~L~~lv~~-~--------------------------------G~--------------   82 (217)
                                  +..||.+||..|...+.+ |                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999999987 2                                11              


Q ss_pred             -----------chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           83 -----------RWSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        83 -----------~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                                 .|..||+.+|+||.+++|+||+..|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       6999999999999999999999999775

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.77  E-value=2.3e-19  Score=126.30  Aligned_cols=59  Identities=24%  Similarity=0.347  Sum_probs=47.3

Q ss_pred             cchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           48 CRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        48 cr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      .--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            44689999999999999999999999999999999999999999 999999999998653

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=2.4e-19  Score=121.51  Aligned_cols=58  Identities=29%  Similarity=0.540  Sum_probs=54.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCC
Q 047269            3 AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK   61 (217)
Q Consensus         3 ~~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~   61 (217)
                      .+|.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|.++
T Consensus         2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            46789999999999999999999999779999999999 99999999999999999875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.76  E-value=1.9e-19  Score=138.00  Aligned_cols=82  Identities=13%  Similarity=0.300  Sum_probs=76.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccc----cccccccccchhhhhccC-----CCCCCC-CCCHHHHHHH
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVT----GLKRCGKSCRLRWLNYLS-----PNVKHG-EFTEEEENLI   73 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l~-----p~~~~~-~WT~eED~~L   73 (217)
                      .+..++++||+|||+.|+++|++||.|+|..|++.+    + +||..+|++||++++.     |.+++| +|+++|+.+|
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            456889999999999999999999999999999875    6 8999999999999997     999999 9999999999


Q ss_pred             HHHHHHhCCchhh
Q 047269           74 IRLHNLLGNRWSL   86 (217)
Q Consensus        74 ~~lv~~~G~~W~~   86 (217)
                      +.++..+|++|+.
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999977

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.75  E-value=3.9e-19  Score=117.14  Aligned_cols=52  Identities=42%  Similarity=0.785  Sum_probs=49.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCC
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN   59 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~   59 (217)
                      +++|+||+|||++|+++|.+||.++|..||..|+ +|++.||+.||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999878999999999 999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.74  E-value=5.1e-19  Score=116.51  Aligned_cols=52  Identities=31%  Similarity=0.635  Sum_probs=48.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCC
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN   59 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~   59 (217)
                      +++|+||+|||++|+++|..||.++|..||+.|+ +|++.||+.||.++|+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999989999999999 999999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.74  E-value=3.4e-18  Score=120.06  Aligned_cols=58  Identities=24%  Similarity=0.216  Sum_probs=55.2

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           56 LSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        56 l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      .+|.+++++||+|||++|+++|.+||.+|..||.+|||||++|||+||+.++++....
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999987665

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=2.1e-18  Score=119.03  Aligned_cols=60  Identities=28%  Similarity=0.413  Sum_probs=56.6

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHHhcCcc
Q 047269           55 YLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINK  115 (217)
Q Consensus        55 ~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~~~  115 (217)
                      +|+|.+++++||.|||++|+++|..||.+|..||+ ++|||+.|||+||+.+|++.+.+..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999876543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.74  E-value=1.9e-18  Score=132.61  Aligned_cols=78  Identities=15%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccc----cccccccccchhhhhcc-----CCCCCCCCCCHHH-HHHHH
Q 047269            5 NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVT----GLKRCGKSCRLRWLNYL-----SPNVKHGEFTEEE-ENLII   74 (217)
Q Consensus         5 ~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l-----~p~~~~~~WT~eE-D~~L~   74 (217)
                      ...++++||+|||+.|+++|++||.|+|..|++..    + +||..+|++||++++     +|.+++|.|+++| +.+|+
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            35789999999999999999999999999999864    5 899999999999999     8999999999999 89999


Q ss_pred             HHHHHhCCc
Q 047269           75 RLHNLLGNR   83 (217)
Q Consensus        75 ~lv~~~G~~   83 (217)
                      .++..||++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999974

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.72  E-value=2e-18  Score=120.19  Aligned_cols=64  Identities=22%  Similarity=0.355  Sum_probs=58.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccc-cccccccchhhhhccCCCCCCCCCC
Q 047269            3 AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGL-KRCGKSCRLRWLNYLSPNVKHGEFT   66 (217)
Q Consensus         3 ~~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT   66 (217)
                      ..+..++++||+|||++|+++|++||.++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            456789999999999999999999998899999999976 8999999999999999999987653

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=8.6e-18  Score=113.81  Aligned_cols=55  Identities=27%  Similarity=0.480  Sum_probs=51.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~  111 (217)
                      +|.+++++||+|||++|+++|.+|| ++|..||..|||||+.||++||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5788999999999999999999999 699999999999999999999999987654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.70  E-value=6.4e-18  Score=114.61  Aligned_cols=56  Identities=21%  Similarity=0.458  Sum_probs=52.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCC
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV   60 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~   60 (217)
                      .+.+++++||+|||++|+++|++||.++|..||+.|+ +||+.||+.||.++|.+..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence            5679999999999999999999999779999999999 9999999999999998653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.69  E-value=2.6e-17  Score=108.30  Aligned_cols=50  Identities=30%  Similarity=0.571  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           60 VKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        60 ~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      +++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 999999999999999999999999864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.68  E-value=8e-18  Score=115.67  Aligned_cols=56  Identities=25%  Similarity=0.373  Sum_probs=49.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhcccc-ccccccccchhhhhccCCCCC
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTG-LKRCGKSCRLRWLNYLSPNVK   61 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qcr~Rw~~~l~p~~~   61 (217)
                      ..+|++||+|||++|+++|++||.++|..||+.++ .+||+.||++||.+++.|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            36899999999999999999999889999998754 289999999999999988764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.68  E-value=5e-17  Score=106.97  Aligned_cols=50  Identities=36%  Similarity=0.733  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           60 VKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        60 ~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      +++++||+|||++|+++|.+||. +|..||..|||||+.||++||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999996 699999999999999999999998864

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=7.1e-17  Score=112.57  Aligned_cols=56  Identities=23%  Similarity=0.400  Sum_probs=52.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~  112 (217)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|||||+.||++||+++|++.++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~   60 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK   60 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence            4678999999999999999999999 7999999999999999999999999987654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.66  E-value=9.7e-17  Score=106.06  Aligned_cols=49  Identities=24%  Similarity=0.279  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhhH
Q 047269           61 KHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP--GRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~k~Rw~~~l~k  109 (217)
                      ++++||+|||++|+++|.+|| ++|..||..||  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999999864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.66  E-value=1.5e-16  Score=110.68  Aligned_cols=59  Identities=24%  Similarity=0.191  Sum_probs=53.7

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhhHHhcC
Q 047269           55 YLSPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP--GRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        55 ~l~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      ...+..++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++|++.+..
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            346678899999999999999999999 79999999999  999999999999999887543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.65  E-value=1.2e-16  Score=108.25  Aligned_cols=53  Identities=17%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      ++.+.+++||+|||++|+++|.+|| ++|..||++||+||+.||++||.++|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678899999999999999999999 8999999999999999999999998753

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.6e-17  Score=114.57  Aligned_cols=57  Identities=23%  Similarity=0.366  Sum_probs=52.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCC
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHG   63 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~   63 (217)
                      +|.+++++||+|||++|+++|+.||. +|..||+ ++ |||+.||+.||.++|+|.++++
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            68899999999999999999999998 9999999 76 7999999999999998876654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.64  E-value=8.6e-17  Score=108.35  Aligned_cols=52  Identities=23%  Similarity=0.470  Sum_probs=47.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269            5 NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         5 ~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      ..+.+++||+|||++|+++|++||.++|..||+.||.+||+.||+.||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3577899999999999999999998899999999986899999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.64  E-value=6.3e-17  Score=106.94  Aligned_cols=50  Identities=28%  Similarity=0.476  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcchhhccccc-cccccccchhhhhccC
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGL-KRCGKSCRLRWLNYLS   57 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~l~   57 (217)
                      ++|+||+|||++|+++|++||.++|..||..++. +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            6899999999999999999998899999999975 6999999999999874

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=4.9e-17  Score=114.83  Aligned_cols=61  Identities=23%  Similarity=0.349  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcchhhccccccccccccchhhhhccCCCCCCCC
Q 047269            3 AENEYKKGLWTQEEDRILLEYIRVHGR-----GQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGE   64 (217)
Q Consensus         3 ~~~~~kkg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~   64 (217)
                      .+|.+++++||+|||++|+++|..||.     ++|..||+.|+ +||..||+.||.++|.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            367899999999999999999999995     68999999999 99999999999999988776654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.63  E-value=3.4e-16  Score=107.45  Aligned_cols=52  Identities=25%  Similarity=0.417  Sum_probs=47.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhhHHh
Q 047269           60 VKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP--GRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        60 ~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~k~Rw~~~l~k~~  111 (217)
                      .++++||+|||++|+++|.+|| ++|..||+.+|  |||+.||++||+++++..+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4689999999999999999999 69999999865  9999999999999987654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.61  E-value=1.2e-16  Score=112.01  Aligned_cols=58  Identities=24%  Similarity=0.380  Sum_probs=53.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCC
Q 047269            3 AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKH   62 (217)
Q Consensus         3 ~~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~   62 (217)
                      .+|.+++++||+|||++|+++|+.||. +|..||+.|+ +||..||+.||.++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            467899999999999999999999999 9999999999 999999999999998765554

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=5.4e-16  Score=109.43  Aligned_cols=56  Identities=25%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLG------NRWSLIAGRVPGRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G------~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~  112 (217)
                      +|.+.+++||.|||++|+++|.+||      ++|..||.+|+|||+.||++||+.+|.+...
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999      7899999999999999999999999977553

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.60  E-value=1.1e-15  Score=102.96  Aligned_cols=50  Identities=26%  Similarity=0.427  Sum_probs=46.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHHh
Q 047269           58 PNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP-GRTDNQVKNHWNTHL  107 (217)
Q Consensus        58 p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRT~~q~k~Rw~~~l  107 (217)
                      ..+.+++||++||.+|+++|.+|| ++|..||++|| +||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456688999999999999999999 89999999999 999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.36  E-value=1.4e-16  Score=116.20  Aligned_cols=56  Identities=27%  Similarity=0.205  Sum_probs=52.9

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           55 YLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        55 ~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      .++|.+++|+||.|||++|+++|.+||.+|..||.+|||||++||++||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56789999999999999999999999999999999999999999999999998764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.54  E-value=3.3e-15  Score=105.02  Aligned_cols=55  Identities=24%  Similarity=0.282  Sum_probs=48.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCC
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKH   62 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~   62 (217)
                      +|.+++|+||+|||++|+++|++||. +|..||+.|  |||+.||+.||.. |....+.
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            57899999999999999999999998 799999999  6999999999975 5544443

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.52  E-value=7.9e-15  Score=109.84  Aligned_cols=77  Identities=17%  Similarity=0.324  Sum_probs=65.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccc----cccccccccchhhhhcc-----CCCCCCCCCCHHHHHH-H
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVT----GLKRCGKSCRLRWLNYL-----SPNVKHGEFTEEEENL-I   73 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l-----~p~~~~~~WT~eED~~-L   73 (217)
                      ....++++||+|||+.|+++|++||.|+|..|++.+    + +||..+|++||++++     +|.+++|.-++.|--. +
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            356889999999999999999999999999999865    5 899999999999998     7899998877776554 7


Q ss_pred             HHHHHHhC
Q 047269           74 IRLHNLLG   81 (217)
Q Consensus        74 ~~lv~~~G   81 (217)
                      ++|...+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766554

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.51  E-value=1.2e-14  Score=104.52  Aligned_cols=69  Identities=16%  Similarity=0.374  Sum_probs=59.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhcc----ccccccccccchhhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 047269           10 GLWTQEEDRILLEYIRVHGRGQWNRIHKV----TGLKRCGKSCRLRWLNYL-----SPNVKHG-EFTEEEENLIIRLHNL   79 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qcr~Rw~~~l-----~p~~~~~-~WT~eED~~L~~lv~~   79 (217)
                      ++||+|||+.|+++|++||.|+|..|++.    ++ +||..+|++||++++     +|.+++| +...+...+++.+...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999985    77 999999999999987     6766655 6777777888887653

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.51  E-value=1.9e-14  Score=101.12  Aligned_cols=52  Identities=13%  Similarity=0.270  Sum_probs=47.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           58 PNVKHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        58 p~~~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      +...+++||.+||.+|+.++..||    .+|..||++|||||+.||++||..++..
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456789999999999999999999    6899999999999999999999988753

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.50  E-value=5.3e-15  Score=114.91  Aligned_cols=82  Identities=18%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR   83 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~   83 (217)
                      +|.+++|+||+|||++|+++|..||. +|..||+.|+ |||..||+.||.++|.+.+..++|+.+--    ......+.+
T Consensus        49 ~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~  122 (131)
T 3zqc_A           49 DPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRK  122 (131)
T ss_dssp             STTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC----
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhh
Confidence            57889999999999999999999997 8999999999 99999999999999999999988875521    001112345


Q ss_pred             hhhhhccC
Q 047269           84 WSLIAGRV   91 (217)
Q Consensus        84 W~~Ia~~l   91 (217)
                      |..|++.|
T Consensus       123 ~~~i~k~~  130 (131)
T 3zqc_A          123 AADVPKKL  130 (131)
T ss_dssp             --------
T ss_pred             hhhcchhc
Confidence            77776655

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.49  E-value=1.2e-14  Score=103.71  Aligned_cols=48  Identities=27%  Similarity=0.584  Sum_probs=45.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY   55 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   55 (217)
                      ...+++||+|||++|+++|++|| ++|..||++|| +||+.||+.||.++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            45689999999999999999999 69999999999 99999999999997

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.47  E-value=5.8e-14  Score=108.37  Aligned_cols=56  Identities=27%  Similarity=0.567  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~  112 (217)
                      .+..++|+||+|||++|+++|.+||.+|..||..|||||+.||+.||.++|.+.+.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~   61 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSIS   61 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccc
Confidence            45678999999999999999999999999999999999999999999999865543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.46  E-value=6.9e-14  Score=104.39  Aligned_cols=51  Identities=35%  Similarity=0.728  Sum_probs=47.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           60 VKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        60 ~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      +++|+||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|.+.
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   53 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   53 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCc
Confidence            67899999999999999999996 7999999999999999999999988543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.45  E-value=3.8e-14  Score=101.11  Aligned_cols=48  Identities=21%  Similarity=0.372  Sum_probs=45.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 047269           59 NVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTH  106 (217)
Q Consensus        59 ~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~  106 (217)
                      ...+++||++||.+|+++|.+||++|..||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999865

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.17  E-value=7.7e-15  Score=107.00  Aligned_cols=53  Identities=25%  Similarity=0.465  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCC
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSP   58 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p   58 (217)
                      ++.+++|+||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|..
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            56789999999999999999999998 8999999999 99999999999998763

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.43  E-value=3e-14  Score=100.16  Aligned_cols=53  Identities=19%  Similarity=0.409  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC---CCcchhhccccccccccccchhhhhccC
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGR---GQWNRIHKVTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      .+...+++||+|||++|+.+|+.||.   .+|..||++|| |||..||+.||..++.
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34578899999999999999999993   48999999999 9999999999998664

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.43  E-value=3e-13  Score=91.44  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHHhhH
Q 047269           60 VKHGEFTEEEENLIIRLHNLLGNRWSLIA---GRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        60 ~~~~~WT~eED~~L~~lv~~~G~~W~~Ia---~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      .++.+||+||++.|+++|++||.+|+.|+   .++++||..++++||++++++
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            46789999999999999999999999999   678999999999999998865

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.41  E-value=5e-13  Score=96.09  Aligned_cols=49  Identities=24%  Similarity=0.415  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhHHh
Q 047269           63 GEFTEEEENLIIRLHNLLGN-RWSLIAGR----VPGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~k~Rw~~~l~k~~  111 (217)
                      .+||.|||+.|+++|.+||. +|+.|++.    |+|||+++||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999996 99999995    899999999999999997654

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.40  E-value=2.2e-13  Score=102.23  Aligned_cols=49  Identities=27%  Similarity=0.412  Sum_probs=45.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           62 HGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      +|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~   50 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA   50 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence            589999999999999999995 8999999999999999999999988654

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.37  E-value=1.4e-12  Score=97.60  Aligned_cols=55  Identities=20%  Similarity=0.311  Sum_probs=48.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccC----CCCCHHHHHHHHHHHhhHHh
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRV----PGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~l----pgRT~~q~k~Rw~~~l~k~~  111 (217)
                      .+..++++||.|||+.|+.+|.+||. +|+.|++.+    ++||+.+||+||+++++...
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34567899999999999999999996 999999965    89999999999999997643

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.36  E-value=3.7e-13  Score=113.36  Aligned_cols=55  Identities=27%  Similarity=0.507  Sum_probs=48.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269           58 PNVKHGEFTEEEENLIIRLHNLLGNR------WSLIAGRVPGRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        58 p~~~~~~WT~eED~~L~~lv~~~G~~------W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~  112 (217)
                      +.+++++||+|||++|+++|++||++      |..||++|||||++|||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            45778999999999999999999875      99999999999999999999999998765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.36  E-value=7e-13  Score=101.52  Aligned_cols=55  Identities=25%  Similarity=0.400  Sum_probs=50.3

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhHH
Q 047269           56 LSPNVKHGEFTEEEENLIIRLHNLLGN-RWSLIAGR----VPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        56 l~p~~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |++||+.+||+||+++++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            566788999999999999999999996 99999997    49999999999999999753

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.32  E-value=1.9e-12  Score=94.97  Aligned_cols=51  Identities=24%  Similarity=0.405  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269           61 KHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~  111 (217)
                      .+++||.|||.+|++++..||    ++|..||+.|||||+.+|++||..++....
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~   61 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK   61 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            467999999999999999996    689999999999999999999999886643

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.29  E-value=3.8e-12  Score=97.56  Aligned_cols=54  Identities=28%  Similarity=0.417  Sum_probs=48.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhHH
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLGN-RWSLIAGR----VPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      ....++++||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++..
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34567899999999999999999995 99999986    48999999999999999764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.19  E-value=4.1e-12  Score=93.14  Aligned_cols=49  Identities=10%  Similarity=0.278  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CCCcchhhccccccccccccchhhhhcc
Q 047269            7 YKKGLWTQEEDRILLEYIRVHG---RGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      -.+++||+|||++|.+++.+||   ..+|..||+.|| |||..||+.||..++
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3478999999999999999997   347999999999 999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=6.3e-11  Score=80.23  Aligned_cols=47  Identities=11%  Similarity=0.058  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           61 KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      ..++||++|+.++++++..||.+|..||..||+||..+|..+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999998654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=99.10  E-value=1.4e-10  Score=84.66  Aligned_cols=66  Identities=17%  Similarity=0.248  Sum_probs=59.0

Q ss_pred             cccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHHhhHHhcC
Q 047269           44 CGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRV-----PGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        44 t~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~l-----pgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      .+.=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+.++     ++||..++|+||..+.++.+..
T Consensus        16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~   86 (93)
T 3hm5_A           16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            345678999999976    89999999999999999999999999999     5899999999999998876543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.02  E-value=1.5e-10  Score=78.18  Aligned_cols=50  Identities=20%  Similarity=0.311  Sum_probs=45.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcchhh---ccccccccccccchhhhhccC
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIH---KVTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia---~~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      ...+++||+|||+.|+++|++||. +|..|+   ..++ +||...+++||++...
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            457899999999999999999998 999999   5666 9999999999998654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=2.4e-10  Score=77.29  Aligned_cols=48  Identities=17%  Similarity=0.283  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      ...++||+||++++.+++..||. +|..||..|| +|+..||..+|....
T Consensus        10 ~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           10 QFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             SCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            45689999999999999999997 9999999999 999999999997643

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.98  E-value=6.1e-10  Score=77.85  Aligned_cols=50  Identities=24%  Similarity=0.286  Sum_probs=45.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           59 NVKHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        59 ~~~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      ....+.||.||+++|.+++..|+    .+|..||.+| |||..+|++||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45578999999999999999997    6799999998 99999999999988655

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.89  E-value=1.9e-09  Score=75.35  Aligned_cols=52  Identities=19%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269           61 KHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~  112 (217)
                      ....||.+|+.+|.+++..|+    .+|..||..|||||..+|+.||..+++..-+
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s   62 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGS   62 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcccc
Confidence            346899999999999999998    4799999999999999999999988654433

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.87  E-value=2.2e-09  Score=89.69  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           61 KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      ..++||++|+.++++++.+||++|..||+.|++||..||+++|+...++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999977654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.86  E-value=8.3e-10  Score=77.15  Aligned_cols=50  Identities=18%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CCcchhhccccccccccccchhhhhcc
Q 047269            5 NEYKKGLWTQEEDRILLEYIRVHGR---GQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         5 ~~~kkg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      ...+.+.||.|||++|.+++.+|+.   +.|..||+.+|  ||..+|+.||..+.
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~   56 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence            4567889999999999999999984   47999999975  99999999998754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.78  E-value=3.6e-09  Score=97.50  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           63 GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      ..||.+|-.++++++.+||.+|..||..+++||..|||++|....
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999997543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.74  E-value=3.6e-09  Score=73.97  Aligned_cols=50  Identities=16%  Similarity=0.376  Sum_probs=44.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCcchhhccccccccccccchhhhhccCC
Q 047269            8 KKGLWTQEEDRILLEYIRVHGR---GQWNRIHKVTGLKRCGKSCRLRWLNYLSP   58 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p   58 (217)
                      ....||.+|+++|..++..|+.   ++|..||..|| +||..+|+.||...+..
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            3468999999999999999986   47999999999 99999999999887543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.67  E-value=7.7e-09  Score=69.49  Aligned_cols=48  Identities=23%  Similarity=0.455  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCcchhhc-cccccccccccchhhhhccC
Q 047269            9 KGLWTQEEDRILLEYIRVH--------GRGQWNRIHK-VTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      +.+||+|||+.|+++|..|        |..-|+.+|+ .++ ++|..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5789999999999999999        4446999999 788 9999999999999875

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.62  E-value=1.3e-08  Score=84.99  Aligned_cols=49  Identities=27%  Similarity=0.436  Sum_probs=45.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccC
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      ...++||+||++++++++.+||. +|..||+.|| +||..||+.+|.++..
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34679999999999999999998 9999999999 9999999999988764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.51  E-value=1.2e-07  Score=63.53  Aligned_cols=47  Identities=19%  Similarity=0.341  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CC-chhhhhc-cCCCCCHHHHHHHHHHHhh
Q 047269           62 HGEFTEEEENLIIRLHNLL--------GN-RWSLIAG-RVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~--------G~-~W~~Ia~-~lpgRT~~q~k~Rw~~~l~  108 (217)
                      +.+||.|||..|++.|.+|        |+ -|..+|+ .+|++|-.+||+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        43 3999999 8999999999999988764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.45  E-value=4.8e-07  Score=79.10  Aligned_cols=99  Identities=19%  Similarity=0.250  Sum_probs=79.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccch-------hhhh----------------------------
Q 047269           10 GLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRL-------RWLN----------------------------   54 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~-------Rw~~----------------------------   54 (217)
                      +.||..+...++.++.+||..+|..||..|+ ++|...++.       ||..                            
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999998 888877652       2210                            


Q ss_pred             ---------------ccCCCCCCCCCCHHHHHHHHHHHHHhC----Cchhhhhc------------cCCCCCHHHHHHHH
Q 047269           55 ---------------YLSPNVKHGEFTEEEENLIIRLHNLLG----NRWSLIAG------------RVPGRTDNQVKNHW  103 (217)
Q Consensus        55 ---------------~l~p~~~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~------------~lpgRT~~q~k~Rw  103 (217)
                                     +..+..+...||++||..|+-++.+||    +.|..|..            ++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                           001222446899999999999999999    57999962            44679999999999


Q ss_pred             HHHhhH
Q 047269          104 NTHLCK  109 (217)
Q Consensus       104 ~~~l~k  109 (217)
                      ..+++-
T Consensus       270 ~tLi~~  275 (304)
T 1ofc_X          270 NTLITL  275 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.39  E-value=4.8e-08  Score=67.87  Aligned_cols=45  Identities=9%  Similarity=0.271  Sum_probs=39.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---Ccchhhccccccccccccchhhh
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRG---QWNRIHKVTGLKRCGKSCRLRWL   53 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~Rw~   53 (217)
                      ..+.||.+|+++|..++..|+.+   .|.+||..|| |||..+|+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            35689999999999999999864   7999999999 999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=1.2e-06  Score=59.41  Aligned_cols=49  Identities=12%  Similarity=0.173  Sum_probs=44.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHHH
Q 047269           58 PNVKHGEFTEEEENLIIRLHNLLGNRWSLIAG-RVPGRTDNQVKNHWNTH  106 (217)
Q Consensus        58 p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~-~lpgRT~~q~k~Rw~~~  106 (217)
                      |.+...+||++|-.+..+++.+||.+|..|++ .||+||..+|...|+..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            56777899999999999999999999999999 58999999999988743

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.31  E-value=1.1e-07  Score=66.16  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHH
Q 047269           62 HGEFTEEEENLIIRLHNLLGN----RWSLIAGRVPGRTDNQVKNHWN  104 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~----~W~~Ia~~lpgRT~~q~k~Rw~  104 (217)
                      .++||.+|+++|..++..|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999885

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.28  E-value=9e-07  Score=63.70  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           64 EFTEEEENLIIRLHNLLGN---RWSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        64 ~WT~eED~~L~~lv~~~G~---~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      -||.|||..|+...++-|.   .|..||+.|.+|+++||++||+.+++-.
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            5999999999999999986   8999999999999999999999998654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.16  E-value=4.4e-06  Score=60.67  Aligned_cols=59  Identities=19%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCC-----CCCHHHHHHHHHHHhhHHhc
Q 047269           50 LRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVP-----GRTDNQVKNHWNTHLCKKLG  112 (217)
Q Consensus        50 ~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lp-----gRT~~q~k~Rw~~~l~k~~~  112 (217)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||..++|.||+.+.++.+.
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45666665    3689999999999999999999999998873     79999999999999887654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.45  E-value=2.6e-07  Score=63.09  Aligned_cols=45  Identities=16%  Similarity=0.326  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           64 EFTEEEENLIIRLHNLLGN---RWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        64 ~WT~eED~~L~~lv~~~G~---~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      -||.|||..|+..+++-|.   .|..||..| +||++||.+||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            5999999999999999996   899999999 99999999999988753

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=1.5e-06  Score=58.87  Aligned_cols=50  Identities=16%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhc-cccccccccccchhhhhc
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNY   55 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~   55 (217)
                      .|......||+||-++..+++.+||. +|..|++ .|+ +|+..+|...|...
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence            46677889999999999999999999 9999998 688 99999999877543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.95  E-value=1.3e-05  Score=58.57  Aligned_cols=45  Identities=13%  Similarity=0.093  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 047269           62 HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTH  106 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~  106 (217)
                      ...||++|..+..+++..||.+|..||..||+||..+|-..|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            458999999999999999999999999999999999999998743

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.93  E-value=1.9e-05  Score=54.46  Aligned_cols=44  Identities=14%  Similarity=0.168  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 047269           62 HGEFTEEEENLIIRLHNLLGNRWSLIAG-RVPGRTDNQVKNHWNT  105 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~~W~~Ia~-~lpgRT~~q~k~Rw~~  105 (217)
                      ..+||++|-.+..+++.+||.+|..|++ .||+||..+|...|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5999999999999983

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.91  E-value=4.2e-06  Score=77.15  Aligned_cols=47  Identities=28%  Similarity=0.471  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      ...+||.||-+++++++.+||. +|..||++|| +|+..||+.+|.++.
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4679999999999999999998 9999999999 999999999987653

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.82  E-value=8.3e-06  Score=59.37  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=42.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhcccc----ccccccccchhhhhcc
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTG----LKRCGKSCRLRWLNYL   56 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l   56 (217)
                      ++.++||.||+..|++++++|+. .|..|+....    .+||..+++.||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998 9999999882    2799999999997643

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.76  E-value=1.3e-05  Score=55.33  Aligned_cols=45  Identities=16%  Similarity=0.187  Sum_probs=40.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcchhhc-cccccccccccchhhhh
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLN   54 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~   54 (217)
                      ....||+||-++..+++.+||. +|..|++ .|+ +|+..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            4568999999999999999999 9999999 699 9999999987764

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.75  E-value=1.2e-05  Score=58.68  Aligned_cols=44  Identities=16%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhh
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLN   54 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~   54 (217)
                      ...||+||.++..+++..||. +|..||..++ +|+..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence            457999999999999999998 9999999999 9999999988754

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.50  E-value=7.5e-05  Score=53.16  Aligned_cols=52  Identities=13%  Similarity=0.342  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CchhhhhccCC----CCCHHHHHHHHHHHhhHHhcC
Q 047269           62 HGEFTEEEENLIIRLHNLLG----------NRWSLIAGRVP----GRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G----------~~W~~Ia~~lp----gRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      ...||.+|-..||.++..+.          ..|..||..|.    .||+.||+.+|.++.+.....
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~   69 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKA   69 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46799999999999997632          25999999873    799999999999988765443

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.48  E-value=7.9e-05  Score=53.60  Aligned_cols=44  Identities=25%  Similarity=0.472  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCcchhhccccccccccccchhhhh
Q 047269           10 GLWTQEEDRILLEYIRVHGR--GQWNRIHKVTGLKRCGKSCRLRWLN   54 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~   54 (217)
                      -.||.|||..|+...++.|.  ..|..||+.++ +|++.|+.+|++.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~   79 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            36999999999999999975  36999999998 9999999999986

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.45  E-value=0.00021  Score=63.87  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=77.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc----------------------------------
Q 047269           10 GLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY----------------------------------   55 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~----------------------------------   55 (217)
                      +.||.-+=..++.++.+||..+-..||..|+.+++...++ +|..+                                  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999985457765554 11110                                  


Q ss_pred             --------------c----CCC-CCCCCCCHHHHHHHHHHHHHhC----Cchhhhhcc------------CCCCCHHHHH
Q 047269           56 --------------L----SPN-VKHGEFTEEEENLIIRLHNLLG----NRWSLIAGR------------VPGRTDNQVK  100 (217)
Q Consensus        56 --------------l----~p~-~~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~------------lpgRT~~q~k  100 (217)
                                    |    .++ .+...||.+||..|+-++.+||    +.|..|-..            +..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                          0    011 1345799999999999999999    579999332            3579999999


Q ss_pred             HHHHHHhhHHhc
Q 047269          101 NHWNTHLCKKLG  112 (217)
Q Consensus       101 ~Rw~~~l~k~~~  112 (217)
                      .|...|++-...
T Consensus       283 rRc~tLi~~IeK  294 (374)
T 2y9y_A          283 RRGNTLLQCLEK  294 (374)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999865443

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.39  E-value=0.00051  Score=56.36  Aligned_cols=100  Identities=11%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC--CCCcchhhcc--ccccccccccch-------hhhhcc--------------------
Q 047269            8 KKGLWTQEEDRILLEYIRVHG--RGQWNRIHKV--TGLKRCGKSCRL-------RWLNYL--------------------   56 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--~~~~Rt~~qcr~-------Rw~~~l--------------------   56 (217)
                      ....||..|-..|++++.+||  .+.|..|+..  +. +++...+..       ++...+                    
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~   84 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP   84 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence            456899999999999999999  5689999853  43 455433321       000000                    


Q ss_pred             ---------------------------------------C-----CCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhc--
Q 047269           57 ---------------------------------------S-----PNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAG--   89 (217)
Q Consensus        57 ---------------------------------------~-----p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~--   89 (217)
                                                             -     +..-...||.+||..|+..+.+|| ++|..|..  
T Consensus        85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~  164 (211)
T 4b4c_A           85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP  164 (211)
T ss_dssp             EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred             hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence                                                   0     001123599999999999999999 99999954  


Q ss_pred             cC------------CCCCHHHHHHHHHHHhh
Q 047269           90 RV------------PGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        90 ~l------------pgRT~~q~k~Rw~~~l~  108 (217)
                      .+            ..+++..+..|...+|+
T Consensus       165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             hcCccccccccccccCCChHHHHHHHHHHHH
Confidence            21            12456789999877765

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.14  E-value=7.9e-05  Score=53.05  Aligned_cols=50  Identities=26%  Similarity=0.532  Sum_probs=39.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---------CCcchhhcccc---ccccccccchhhhhcc
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGR---------GQWNRIHKVTG---LKRCGKSCRLRWLNYL   56 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~~---~~Rt~~qcr~Rw~~~l   56 (217)
                      -+...||.+|-..|+.+......         .-|..||..|.   ..|++.||+.+|.+..
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            35688999999999999865321         15999998654   4699999999998753

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.21  E-value=6.6e-05  Score=51.17  Aligned_cols=44  Identities=18%  Similarity=0.389  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CCcchhhccccccccccccchhhhhcc
Q 047269           11 LWTQEEDRILLEYIRVHGR--GQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus        11 ~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      .||.|||..|+...++-|.  .-|..||+.++  |++.|+..||+..+
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLM   61 (70)
Confidence            6999999999999999886  36999999985  99999999998754

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.91  E-value=0.0044  Score=44.84  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=41.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhcccc----ccccccccchhhhhcc
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTG----LKRCGKSCRLRWLNYL   56 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l   56 (217)
                      ++...||.||...|.+++++|+- .|--|+....    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999998 9999997653    2689999999997653

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.31  E-value=0.049  Score=36.64  Aligned_cols=47  Identities=19%  Similarity=0.110  Sum_probs=40.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHHh
Q 047269           61 KHGEFTEEEENLIIRLHNLLGNR---WSLIAGRV--PGRTDNQVKNHWNTHL  107 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G~~---W~~Ia~~l--pgRT~~q~k~Rw~~~l  107 (217)
                      .+-.||+|..+..+++|.++|..   +..|.+.|  +|.|..+|+.|.+.+.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999954   78898876  7999999999877653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.96  E-value=0.05  Score=47.35  Aligned_cols=49  Identities=20%  Similarity=0.220  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269           62 HGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKK  110 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~  110 (217)
                      -+.||..+...++.++.+|| .+|..||..|+|+|...|+.++.....+-
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            35799999999999999999 58999999999999999988777666543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.78  E-value=0.027  Score=45.85  Aligned_cols=29  Identities=34%  Similarity=0.486  Sum_probs=26.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhc
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHK   37 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~   37 (217)
                      ...||++||..|+..|.+||.|+|..|-.
T Consensus       134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             SSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            44699999999999999999999999975

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=94.17  E-value=0.027  Score=48.25  Aligned_cols=28  Identities=39%  Similarity=0.667  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhc
Q 047269           10 GLWTQEEDRILLEYIRVHGRGQWNRIHK   37 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~   37 (217)
                      ..|+.+||..|+..|-+||.|+|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999999999974

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.92  E-value=0.051  Score=36.54  Aligned_cols=51  Identities=16%  Similarity=0.214  Sum_probs=38.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC--Ccchhhccccc-cccccccchhhhhc
Q 047269            5 NEYKKGLWTQEEDRILLEYIRVHGRG--QWNRIHKVTGL-KRCGKSCRLRWLNY   55 (217)
Q Consensus         5 ~~~kkg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~-~Rt~~qcr~Rw~~~   55 (217)
                      +...+-.||+|.-++.+.+|+..|..  -++.|.+.|+. +.|..+++-|.+.|
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            44567899999999999999999942  26788887763 56777777665443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=83.67  E-value=2.5  Score=36.02  Aligned_cols=47  Identities=11%  Similarity=0.168  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC---Cchhhhhc--cCCCCCHHHHHHHHHHHhh
Q 047269           62 HGEFTEEEENLIIRLHNLLG---NRWSLIAG--RVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G---~~W~~Ia~--~lpgRT~~q~k~Rw~~~l~  108 (217)
                      +++||..|-..|+.++.+||   .+|..|+.  .|+.++...++.-+..++.
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~   54 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME   54 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            57899999999999999999   58999965  5789999999998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-15
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-15
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-15
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-09
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	9e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	3e-12
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-11
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	8e-05
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-11
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-04
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	4e-06
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (160), Expect = 2e-15
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSP 58
           KG WT+EED+ L++ ++ +G  +W+ I K     R GK CR RW N+L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 60  VKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL 107
           +  G +T+EE+  +I+L    G  RWS+IA  + GR   Q +  W+ HL
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.7 bits (160), Expect = 5e-15
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 9  KGLWTQEEDRILLEYIRVHGRGQ-----WNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHG 63
          K  +T EED  +L+ +R +   +     ++ I         G S R R+  YLS  +++ 
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 64 EFTEEEENLIIRLHN 78
             ++   L+     
Sbjct: 60 YEVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (133), Expect = 4e-11
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 63  GEFTEEEENLIIRLHNLLGNR------WSLIAGRVPGRTDNQVKNHWNTHLCKKL 111
             FT+EE+  I+ +      R      +  I+  VP  T N +++ +  +L K+L
Sbjct: 2   ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (156), Expect = 8e-15
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 9  KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSP 58
          K  WT+EED  L + +  +G   W  I       R    C+ RW   L+P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (118), Expect = 2e-09
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 63  GEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL 107
             +T EE+  + +L    G + W +IA  +P RTD Q ++ W   L
Sbjct: 2   TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (141), Expect = 1e-12
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 63  GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107
             +TEEE+ +I + H  LGNRW+ IA  +PGRTDN +KNHWN+ +
Sbjct: 2   TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (114), Expect = 9e-09
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9  KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL 56
          K  WT+EEDRI+ +  +  G  +W  I K+    R   + +  W + +
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTM 46

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 58.1 bits (140), Expect = 3e-12
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHKV---TGLKRCGKSCRLRWLNYL-----SPNVKHG 63
          ++  E   L+E +   G G+W  +          R     + +W   +     +P  + G
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 64 EFTEEEE-NLIIRLHNLLGNR 83
          E   ++  + ++  H     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 1e-11
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLK-RCGKSCRLRWLNYL 56
          K+  W  EED+ L   +R +G G W++I        R     + RW    
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 8e-05
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 61  KHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVP--GRTDNQVKNHWNTHL 107
           K   +  EE+  +       G   WS I        RT   +K+ W T  
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 2e-11
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLK-RCGKSCRLRWLNYLSPNV 60
          KK  WT EE   +   ++ +G G W  I K      R     + RW       +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 4e-06
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 61  KHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP--GRTDNQVKNHWNTHLCKKLGIN 114
           K  ++T EE   +       G   W+ I+   P   RT   +K+ W T    +LG+N
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK--RLGMN 55

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 3e-11
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEE 70
          WT EE  +  + +   GR  W +I K+ G  R     +     Y    VK G   E   
Sbjct: 5  WTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 3e-10
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 65  FTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCK--KLGINKKQKKK 120
           +T EE+ L  +     G RW+ I+  +  RT  QVK++   +     K G++K+   +
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQ 62

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 1e-10
 Identities = 6/46 (13%), Positives = 16/46 (34%)

Query: 61  KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTH 106
               ++E+E+             + LIA  +  +T  +   ++   
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 61

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 1  MKAENEYKKG-LWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY 55
          MK   + +   +W+++E     E    H +  +  I      ++    C L +   
Sbjct: 8  MKVYKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLT 61

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 1e-10
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 63  GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINKKQKK 119
             +T EE+ L ++     G  +  I+  +  ++  QVKN +  +  ++  I++  ++
Sbjct: 6   ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR-RRFNIDEVLQE 61

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 4e-06
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY---LSPNVKHGE 64
              WT EE  + ++ IR +GR  +  I  V G  +     +  ++NY    + +    E
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVLQE 61

Query: 65 FTEE 68
          +  E
Sbjct: 62 WEAE 65

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 1e-09
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY 55
          WT +E+  LLE +   G G W  +       +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 1e-05
 Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 64  EFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTH 106
            +T +EE  ++      G   W  +A ++  +T  + + H+  +
Sbjct: 3   SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 4e-09
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8  KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGL--KRCGKSCRLRW 52
           +  WTQ + ++L   ++ + RG  +   K+      +  + C  R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 5e-08
 Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 57  SPNVKHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHW 103
                   +T+ ++ L+            + W  IA  VP ++       +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 46.5 bits (110), Expect = 4e-08
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 12 WTQEEDRILLEYIRVHGRGQWNRIHKVTGL--KRCGKSCRLRWLNYLSPNVKHGE 64
          W+ +E++     + V+ +   +R   V      R  +  +  +   L  ++K+ E
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKYIE 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 43.8 bits (103), Expect = 4e-07
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 65  FTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHL 107
           ++ +E     R   +      +RW+ +A  V GRT  +VK H+   +
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 50

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 51  RWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR---WSLIAGRVPGRTDNQVKNHWNT 105
                 S   K   +T E + +I+ +    G +   +S+I+ ++  +T  +V + +  
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 8  KKGLWTQEEDRILLEYIRVHG--RGQWNRIHKVTGLKRCGKSCRLRWL 53
          K  LWT+E DR++L   +  G     ++ I +  G  +       R+ 
Sbjct: 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFR 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.79
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.78
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.76
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.75
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.72
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.67
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.65
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.6
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.59
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.59
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.57
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.56
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.54
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.5
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.49
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.48
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.44
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.41
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.4
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.36
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.36
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.3
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.27
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.18
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.14
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.92
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.42
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.4
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.37
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.22
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.8
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.18
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	97.1
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.04
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.84
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.99
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	93.92
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	93.62
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	92.58
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.86

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.6e-20  Score=122.52  Aligned_cols=52  Identities=42%  Similarity=0.785  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCC
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN   59 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~   59 (217)
                      ++||+||+|||++|+++|++||.++|..||+.|| +||+.||+.||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.9e-21  Score=139.42  Aligned_cols=68  Identities=24%  Similarity=0.311  Sum_probs=63.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHH
Q 047269            9 KGLWTQEEDRILLEYIRVHGRG-----QWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLH   77 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~-----~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv   77 (217)
                      |++||+|||++|+++|.+||..     +|..||+.|| |||++||+.||.++|+|.+++++||.+||.+|+.+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~   73 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDD   73 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHh
Confidence            6899999999999999999874     3999999999 999999999999999999999999999999887654

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.1e-19  Score=117.49  Aligned_cols=50  Identities=32%  Similarity=0.668  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCC
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN   59 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~   59 (217)
                      |++||+|||++|+++|.+||.++|..||..|+ +||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999999 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=6.8e-19  Score=112.29  Aligned_cols=47  Identities=51%  Similarity=0.941  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhh
Q 047269           62 HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~  108 (217)
                      +++||+|||++|+++|.+||++|+.||.+|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.9e-18  Score=111.57  Aligned_cols=50  Identities=36%  Similarity=0.744  Sum_probs=47.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           60 VKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        60 ~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      +.+|+||++||++|+++|.+|| ++|..||+.||+||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4689999999999999999999 6899999999999999999999998864

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.67  E-value=8.8e-18  Score=119.44  Aligned_cols=73  Identities=18%  Similarity=0.364  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhcc----ccccccccccchhhhhcc-----CCCCCCCCCCHHHHHHHHHHHHHh
Q 047269           10 GLWTQEEDRILLEYIRVHGRGQWNRIHKV----TGLKRCGKSCRLRWLNYL-----SPNVKHGEFTEEEENLIIRLHNLL   80 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qcr~Rw~~~l-----~p~~~~~~WT~eED~~L~~lv~~~   80 (217)
                      .+||+|||++|+.+|++||.++|..|++.    ++ +||+.||++||+++|     .+..+++.|+++|   |+..|.++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~-~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~   76 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAA   76 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhcc-CCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHH
Confidence            48999999999999999999999999975    34 899999999999988     4677889999776   45555555


Q ss_pred             CCchhh
Q 047269           81 GNRWSL   86 (217)
Q Consensus        81 G~~W~~   86 (217)
                      +..|++
T Consensus        77 ~~~wsq   82 (83)
T d2ckxa1          77 HAYWSQ   82 (83)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            667764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.7e-17  Score=104.50  Aligned_cols=48  Identities=31%  Similarity=0.601  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           62 HGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      +++||.+||++|+++|.+|| ++|..||..|||||+.||++||.++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999998864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-17  Score=109.30  Aligned_cols=53  Identities=26%  Similarity=0.399  Sum_probs=48.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcchhhcc--ccccccccccchhhhhccCCCCC
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKV--TGLKRCGKSCRLRWLNYLSPNVK   61 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~--~~~~Rt~~qcr~Rw~~~l~p~~~   61 (217)
                      |+++||+|||++|+.+|++||.++|..||+.  ++ +|++.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            6889999999999999999998899999986  55 89999999999999988764

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.7e-16  Score=100.99  Aligned_cols=46  Identities=30%  Similarity=0.604  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      |++||+|||++|+++|++||. +|..||..|| |||..||+.||.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHc
Confidence            689999999999999999998 8999999999 999999999999876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-16  Score=103.32  Aligned_cols=49  Identities=29%  Similarity=0.451  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcchhhcccc-ccccccccchhhhhcc
Q 047269            8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTG-LKRCGKSCRLRWLNYL   56 (217)
Q Consensus         8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qcr~Rw~~~l   56 (217)
                      ++++||+|||+.|+++|.+||.++|..||+.++ .+|++.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999999999998643 2899999999999864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-16  Score=101.44  Aligned_cols=44  Identities=25%  Similarity=0.601  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc
Q 047269           11 LWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY   55 (217)
Q Consensus        11 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   55 (217)
                      .||+|||++|+++|++||.++|..||+.|| +||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999989999999999 99999999999876

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.1e-16  Score=100.66  Aligned_cols=51  Identities=24%  Similarity=0.371  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-Cchhhhhcc--CCCCCHHHHHHHHHHHhhHHh
Q 047269           61 KHGEFTEEEENLIIRLHNLLG-NRWSLIAGR--VPGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~--lpgRT~~q~k~Rw~~~l~k~~  111 (217)
                      ++++||+|||++|+++|.+|| ++|+.||+.  |++||+.||++||+++++..+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            467999999999999999999 689999987  569999999999999987654

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-15  Score=98.56  Aligned_cols=48  Identities=25%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhhhccC--CCCCHHHHHHHHHHHhh
Q 047269           61 KHGEFTEEEENLIIRLHNLLG-NRWSLIAGRV--PGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~l--pgRT~~q~k~Rw~~~l~  108 (217)
                      ++++||+|||++|+++|.+|| ++|+.||..+  ++||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 5999999875  59999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=9.7e-16  Score=109.32  Aligned_cols=52  Identities=27%  Similarity=0.485  Sum_probs=48.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           62 HGEFTEEEENLIIRLHNLLGNR------WSLIAGRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~~------W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      +++||+|||++|+++|.+||..      |..||+.|||||+.|||+||+++|.+.++.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~   58 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY   58 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccC
Confidence            5799999999999999999964      999999999999999999999999988753

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.6e-15  Score=100.21  Aligned_cols=51  Identities=27%  Similarity=0.284  Sum_probs=47.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269           63 GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      ..||+|||.+|+++|..||.+|..||.+||+||+.||++||+.++++....
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999999999999999999999998876543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.9e-15  Score=92.85  Aligned_cols=43  Identities=19%  Similarity=0.354  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHH
Q 047269           64 EFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTH  106 (217)
Q Consensus        64 ~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~  106 (217)
                      .||.+||.+|+++|.+|| ++|..||++|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6899999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.9e-15  Score=97.69  Aligned_cols=50  Identities=20%  Similarity=0.450  Sum_probs=45.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCC---Ccchhhccccccccccccchhhhh
Q 047269            4 ENEYKKGLWTQEEDRILLEYIRVHGRG---QWNRIHKVTGLKRCGKSCRLRWLN   54 (217)
Q Consensus         4 ~~~~kkg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~Rw~~   54 (217)
                      .+...+++||+|||++|+++|..||.+   +|..||+.|| +||+.||+.||..
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            456788999999999999999999986   4999999999 9999999999974

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.8e-14  Score=94.96  Aligned_cols=50  Identities=14%  Similarity=0.262  Sum_probs=45.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHHHH
Q 047269           57 SPNVKHGEFTEEEENLIIRLHNLLGN----RWSLIAGRVPGRTDNQVKNHWNTH  106 (217)
Q Consensus        57 ~p~~~~~~WT~eED~~L~~lv~~~G~----~W~~Ia~~lpgRT~~q~k~Rw~~~  106 (217)
                      .+...+++||.+||.+|+++|.+||.    +|..||..|||||+.||+.||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667789999999999999999995    599999999999999999999764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.3e-15  Score=99.21  Aligned_cols=56  Identities=27%  Similarity=0.418  Sum_probs=50.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCC
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFT   66 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT   66 (217)
                      ...||+|||++|+++|..||. +|..||+.|| +||+.||+.||.+++.+..+.+.+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~   57 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDK   57 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            367999999999999999996 9999999999 9999999999999887766666554

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.5e-13  Score=98.62  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=64.7

Q ss_pred             cccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc---hhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269           38 VTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR---WSLIAGRVPGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        38 ~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~---W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~  111 (217)
                      .++ ..+..+++.++.+..++......||.|||..|++.++++|.+   |..||+.|+|||++||++||..+++..-
T Consensus        10 ~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_          10 ALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            445 677778888888888888888899999999999999999977   9999999999999999999999987653

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.40  E-value=1.5e-13  Score=92.17  Aligned_cols=47  Identities=26%  Similarity=0.468  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269           63 GEFTEEEENLIIRLHNLLGN----RWSLIAGRVPGRTDNQVKNHWNTHLCK  109 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~----~W~~Ia~~lpgRT~~q~k~Rw~~~l~k  109 (217)
                      .+||.|||.+|+++|..||.    +|..||.+|||||+.||++||+.++..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999995    599999999999999999999876643

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.36  E-value=7.9e-14  Score=93.61  Aligned_cols=44  Identities=11%  Similarity=0.349  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---cchhhccccccccccccchhhhh
Q 047269           10 GLWTQEEDRILLEYIRVHGRGQ---WNRIHKVTGLKRCGKSCRLRWLN   54 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~~~Rt~~qcr~Rw~~   54 (217)
                      .+||+|||++|+++|..||.+.   |..||..|| +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5899999999999999999864   999999999 9999999999954

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.36  E-value=6.7e-13  Score=93.73  Aligned_cols=50  Identities=24%  Similarity=0.378  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHHHHHhC-Cchhhhhcc----CCCCCHHHHHHHHHHHhhHHhcC
Q 047269           64 EFTEEEENLIIRLHNLLG-NRWSLIAGR----VPGRTDNQVKNHWNTHLCKKLGI  113 (217)
Q Consensus        64 ~WT~eED~~L~~lv~~~G-~~W~~Ia~~----lpgRT~~q~k~Rw~~~l~k~~~~  113 (217)
                      +||.|||++|+.+|.+|| ++|+.|++.    +++||+.||++||+++|+.....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            799999999999999999 599999974    68999999999999999776543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.5e-13  Score=88.66  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhh
Q 047269           62 HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~  108 (217)
                      ...||++|+.+|++++..||.+|..||.+|||||..||+++|+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            35799999999999999999999999999999999999999997754

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-12  Score=89.10  Aligned_cols=46  Identities=13%  Similarity=0.079  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 047269           61 KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTH  106 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~  106 (217)
                      ...+||++|+.+|++++.+||.+|..||.+|||||..||+++|+..
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999854

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.7e-12  Score=85.69  Aligned_cols=47  Identities=28%  Similarity=0.490  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccC
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      ..+||++||++|.+++..||. +|..||.+|| +||+.||+.+|.++..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999997 8999999999 9999999999988653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.6e-12  Score=85.56  Aligned_cols=48  Identities=15%  Similarity=0.290  Sum_probs=43.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269            7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      ....+||+|||++|+.+|..||. +|..||..|| +||..||+.+|....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            34578999999999999999997 9999999999 999999999997643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.9e-10  Score=82.14  Aligned_cols=49  Identities=24%  Similarity=0.415  Sum_probs=43.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC--cchhhccccccccccccchhhhh
Q 047269            5 NEYKKGLWTQEEDRILLEYIRVHGRGQ--WNRIHKVTGLKRCGKSCRLRWLN   54 (217)
Q Consensus         5 ~~~kkg~WT~eED~~L~~~v~~~g~~~--W~~Ia~~~~~~Rt~~qcr~Rw~~   54 (217)
                      ++.+...||.|||+.|+..++++|...  |..||+.|+ +|++.||+.||..
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~   79 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            345677899999999999999999732  999999999 9999999999976

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.1e-07  Score=62.17  Aligned_cols=44  Identities=27%  Similarity=0.363  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           63 GEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      +.||.+|+.+|.+++.+|+    .+|..||..| |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999997    5799999999 999999999998654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=2.7e-07  Score=59.84  Aligned_cols=43  Identities=14%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhcc-CCCCCHHHHHHHHHH
Q 047269           63 GEFTEEEENLIIRLHNLLGNRWSLIAGR-VPGRTDNQVKNHWNT  105 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~-lpgRT~~q~k~Rw~~  105 (217)
                      ..||+||-.++.+++..||.+|..|++. +|+||..+|.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3799999999999999999999999985 699999999999974

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.3e-08  Score=63.68  Aligned_cols=45  Identities=20%  Similarity=0.304  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---Ccchhhccccccccccccchhhhhcc
Q 047269           10 GLWTQEEDRILLEYIRVHGRG---QWNRIHKVTGLKRCGKSCRLRWLNYL   56 (217)
Q Consensus        10 g~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   56 (217)
                      +.||++|+.+|.+++.+|+.|   .|..||..+|  |+..+|..||....
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            579999999999999999764   6999999996  99999999997543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=2.6e-07  Score=59.87  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhcc-ccccccccccchhhhhc
Q 047269           11 LWTQEEDRILLEYIRVHGRGQWNRIHKV-TGLKRCGKSCRLRWLNY   55 (217)
Q Consensus        11 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~-~~~~Rt~~qcr~Rw~~~   55 (217)
                      .||+||-.++.+++..||. +|..|++. +| +|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            6999999999999999999 99999975 67 99999999988653

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=4e-05  Score=46.24  Aligned_cols=45  Identities=24%  Similarity=0.430  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhc---cCCCCCHHHHHHHHHHHh
Q 047269           63 GEFTEEEENLIIRLHNLLGNRWSLIAG---RVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~---~lpgRT~~q~k~Rw~~~l  107 (217)
                      ..||.||-.-|...|+.+|+.|..|-=   +-|||+..++..+|+.++
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            479999999999999999999999943   338999999999998763

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00011  Score=47.47  Aligned_cols=47  Identities=15%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc---------hhhhhc-cCCCCCHHHHHHHHHHHhh
Q 047269           62 HGEFTEEEENLIIRLHNLLGNR---------WSLIAG-RVPGRTDNQVKNHWNTHLC  108 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~~---------W~~Ia~-~lpgRT~~q~k~Rw~~~l~  108 (217)
                      +.+||.+||+.|++.|.++...         |...++ .+|.+|-...|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999997421         999985 6799999999999988774

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00011  Score=47.40  Aligned_cols=48  Identities=23%  Similarity=0.443  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------Ccchhhc-cccccccccccchhhhhccC
Q 047269            9 KGLWTQEEDRILLEYIRVHGRG--------QWNRIHK-VTGLKRCGKSCRLRWLNYLS   57 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~--------~W~~Ia~-~~~~~Rt~~qcr~Rw~~~l~   57 (217)
                      +-+||+|||+.|++.|..+...        =|+..++ .++ .+|..+-|+||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4689999999999999998532        2999985 566 8999999999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.18  E-value=0.00038  Score=45.47  Aligned_cols=46  Identities=22%  Similarity=0.154  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCch---hhhhcc--CCCCCHHHHHHHHHHHh
Q 047269           62 HGEFTEEEENLIIRLHNLLGNRW---SLIAGR--VPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        62 ~~~WT~eED~~L~~lv~~~G~~W---~~Ia~~--lpgRT~~q~k~Rw~~~l  107 (217)
                      +-.||+|+..+.+.++..+|..|   ..|...  ++++|..||+.+...+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999877   466655  59999999999877653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00057  Score=44.94  Aligned_cols=51  Identities=20%  Similarity=0.240  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc----hhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269           61 KHGEFTEEEENLIIRLHNLLGNR----WSLIAGRVPGRTDNQVKNHWNTHLCKKL  111 (217)
Q Consensus        61 ~~~~WT~eED~~L~~lv~~~G~~----W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~  111 (217)
                      ..+.|+++|-++|-.++..+...    |..+|..+..||+..|..+|...++.+-
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~~   61 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG   61 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccccc
Confidence            45689999999999999998843    9999999999999999999987765443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.00024  Score=46.49  Aligned_cols=51  Identities=16%  Similarity=0.243  Sum_probs=38.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCc--chhhccccc-cccccccchhhhhc
Q 047269            5 NEYKKGLWTQEEDRILLEYIRVHGRGQW--NRIHKVTGL-KRCGKSCRLRWLNY   55 (217)
Q Consensus         5 ~~~kkg~WT~eED~~L~~~v~~~g~~~W--~~Ia~~~~~-~Rt~~qcr~Rw~~~   55 (217)
                      +...+-.||+||-++.+.+|..+|.+.|  +.|...|+. ++|..||+-|.+.|
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3455678999999999999999998444  467666542 77888998776554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00036  Score=45.89  Aligned_cols=51  Identities=16%  Similarity=0.333  Sum_probs=43.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CCCcchhhccccccccccccchhhhhccCC
Q 047269            7 YKKGLWTQEEDRILLEYIRVHG---RGQWNRIHKVTGLKRCGKSCRLRWLNYLSP   58 (217)
Q Consensus         7 ~kkg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p   58 (217)
                      ..-+.|+++|-++|-.++....   .|-|..||..+| .|++-.|...|+..+..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            3456899999999999998664   467999999999 99999999999876643

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.0077  Score=35.96  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=36.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcchhhcccc--ccccccccchhhhh
Q 047269            9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTG--LKRCGKSCRLRWLN   54 (217)
Q Consensus         9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~--~~Rt~~qcr~Rw~~   54 (217)
                      +..||.||-.-|...|+++|. .|+.|-=..|  .||+......+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            357999999999999999998 9999974333  37888777776654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.92  E-value=0.042  Score=40.09  Aligned_cols=69  Identities=17%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             ccccccchhhhhcc--CCCCCCCCCCHHHHHHHHHHHHHhC-Cc---hhhhhc------------cCCCCCHHHHHHHHH
Q 047269           43 RCGKSCRLRWLNYL--SPNVKHGEFTEEEENLIIRLHNLLG-NR---WSLIAG------------RVPGRTDNQVKNHWN  104 (217)
Q Consensus        43 Rt~~qcr~Rw~~~l--~p~~~~~~WT~eED~~L~~lv~~~G-~~---W~~Ia~------------~lpgRT~~q~k~Rw~  104 (217)
                      +-..+|+.-|...-  -++.++-.+|.|||.-|+-++.+|| ++   |..|-.            .+..||+..+..|..
T Consensus        28 ~Ki~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~  107 (128)
T d1ofcx2          28 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  107 (128)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHH
Confidence            33445555555432  1344455799999999999999999 55   888742            125799999999999


Q ss_pred             HHhhHHh
Q 047269          105 THLCKKL  111 (217)
Q Consensus       105 ~~l~k~~  111 (217)
                      ++++-..
T Consensus       108 tLi~~i~  114 (128)
T d1ofcx2         108 TLITLIE  114 (128)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9986543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.62  E-value=0.14  Score=31.33  Aligned_cols=44  Identities=23%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHh
Q 047269           64 EFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHL  107 (217)
Q Consensus        64 ~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l  107 (217)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+......-
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            499999999999999999 68999999999999999987655433

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.58  E-value=0.057  Score=39.38  Aligned_cols=48  Identities=19%  Similarity=0.215  Sum_probs=36.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC---cchhhcccc-----------ccccccccchhhh
Q 047269            6 EYKKGLWTQEEDRILLEYIRVHGRGQ---WNRIHKVTG-----------LKRCGKSCRLRWL   53 (217)
Q Consensus         6 ~~kkg~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~-----------~~Rt~~qcr~Rw~   53 (217)
                      ..++..+|.|||.-|+-++.+||-++   |..|-..+-           ..||+..+..|-.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~  107 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  107 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHH
Confidence            44566799999999999999999988   888865443           1466666666543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.86  E-value=0.11  Score=31.88  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccch
Q 047269           11 LWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRL   50 (217)
Q Consensus        11 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~   50 (217)
                      .|+.-|=..++.+..+||..+-..||..|. +++...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~-~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhc-CCCHHHHHH
Confidence            499999999999999999989999999997 788877653