Citrus Sinensis ID: 047275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVSQ
Secondary Structure (PSIPRED)
cccccHHHHHHHcHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHcHHEEEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHEEEEcc
Coil and Loop (DISEMBL)
GVTSMEPFLKKFFPEVYKNMredtnvsnyckfnsqllttftsspFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVgigfsnqsvplylsemappkhrgafniGFQVCTAIGVLGAnllnygtqkikggwgwriSLSMAAAPASILTLGAlilpdtpnsiiqrsnGHEKAKKMLQRVRGTADVQAELDDLIRASIVsrtvkhpfqtiiqrkyrpQLVMAILIPFfqqltginvisfYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVSQ
Flexible Loop (DISEMBL)
gvtsmepflkKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRasivsrtvkhpfqtiiqrkyrPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVSQ
Low Complexity Region (SEG)
GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASIlvggvaflagsalggaafNVYMlilgrvllgvgigFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVSQ
Disordered region (IsUnstruct)
*******FLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPN*I******************GTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV**
Disordered Region (DISOPRED)
GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDL****************IIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVSQ
Disordered Region (DISEMBL)
GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVSQ
Disordered Region (DISPRO)
**TSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVSQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q07423	510	Hexose carrier protein HE	N/A	no	0.996	0.623	0.727	1e-134
Q8L7R8	514	Sugar transport protein 3	yes	no	0.990	0.614	0.626	1e-110
Q41144	523	Sugar carrier protein C O	N/A	no	0.993	0.606	0.608	1e-107
P23586	522	Sugar transport protein 1	no	no	0.993	0.607	0.579	1e-105
Q39228	514	Sugar transport protein 4	no	no	0.990	0.614	0.573	1e-102
Q9FMX3	514	Sugar transport protein 1	no	no	0.993	0.616	0.55	1e-98
O65413	508	Sugar transport protein 1	no	no	0.987	0.620	0.573	3e-97
Q9SX48	517	Sugar transport protein 9	no	no	0.990	0.611	0.556	5e-97
Q9LT15	514	Sugar transport protein 1	no	no	0.990	0.614	0.532	1e-95
Q94AZ2	526	Sugar transport protein 1	no	no	0.993	0.602	0.531	2e-92

>sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1

 Score =  478 bits (1230), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/319 (72%), Positives = 278/319 (87%), Gaps = 1/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM+PFLKKFFP+VY+ M+EDT +SNYCKF+SQLLT+FTSS ++AGL+AS FAS VTR
Sbjct: 45  GVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTR 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
           A GRK SIL+GG  FLA +ALGGAA NVYMLI GRVLLGVG+GF+NQ+VPLYLSEMAPP+
Sbjct: 105 AFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPR 164

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA N GFQ    IG L ANL+NYGT+KI+GGWGWRISL+MAA PA+ILT GAL LP+T
Sbjct: 165 YRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPET 224

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+IQRSN HE+AK MLQRVRGT DVQAELDDLI+ASI+SRT++HPF+ I++RKYRPQL
Sbjct: 225 PNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQL 284

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMA+ IPFFQQ+TGINVI+FYAP+LFRTI L ES SLL S++VTG V + +T  SM++ D
Sbjct: 285 VMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVD 343

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           KLGR+ LF+ GG+ MFV+Q
Sbjct: 344 KLGRRALFIFGGVQMFVAQ 362

Active uptake of hexoses. Probable glucose/hydrogen symport.
Ricinus communis (taxid: 3988)

>sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/324 (62%), Positives = 254/324 (78%), Gaps = 8/324 (2%)

Query: 1   GVTSMEPFLKKFFPEVYKNMRED-----TNVSNYCKFNSQLLTTFTSSPFIAGLIASLFA 55
           GV SM PFLK+FFP+VYK   ED      + ++YC FNSQLLT+FTSS +++GLIA+L A
Sbjct: 47  GVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLA 106

Query: 56  SKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSE 115
           S VTR+ GRK SI +GGV+FLAG+ALGG+A NV MLI+ R+LLGVG+GF+NQSVPLYLSE
Sbjct: 107 SSVTRSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSE 166

Query: 116 MAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGAL 175
           MAP K+RGA + GFQ+C  IG L AN++NY TQ IK   GWRISL+ AA PASILTLG+L
Sbjct: 167 MAPAKYRGAISNGFQLCIGIGFLSANVINYETQNIKH--GWRISLATAAIPASILTLGSL 224

Query: 176 ILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRK 235
            LP+TPNSIIQ +    K + ML+RVRGT DVQ EL DL+ AS  S T  + F  ++QRK
Sbjct: 225 FLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRK 284

Query: 236 YRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITS 295
           YRP+LVMA++IPFFQQ+TGINV++FYAPVL+RT+   ES S LMS +VTG V T +T+ S
Sbjct: 285 YRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGS-LMSTLVTGIVGTSSTLLS 343

Query: 296 MILTDKLGRKVLFLVGGILMFVSQ 319
           M++ D++GRK LFL+GG+ M VSQ
Sbjct: 344 MLVVDRIGRKTLFLIGGLQMLVSQ 367

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 240/319 (75%), Gaps = 2/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM+ FLKKFFP VY+  + D + + YC+++SQ LT FTSS ++A LIASL AS +TR
Sbjct: 48  GVTSMDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITR 107

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GRK S+L GGV F AG+ + GAA  V+MLILGR+LLG GIGF+NQSVPLYLSEMAP K
Sbjct: 108 KFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYK 167

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA NIGFQ+   IG+L AN+LNY   KIKGGWGWR+SL  A  PA I+T+G+L+LPDT
Sbjct: 168 YRGALNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDT 227

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+I+R   HE+A+  L+RVRG  DV  E  DL+ AS  S+ V+HP++ ++QRKYRP L
Sbjct: 228 PNSMIERGQ-HEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHL 286

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
            MAI IPFFQQLTGINVI FYAPVLF TI    S + LMSAV+TG V+  AT+ S+   D
Sbjct: 287 SMAIAIPFFQQLTGINVIMFYAPVLFDTIGFG-SDAALMSAVITGLVNVFATMVSIYGVD 345

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           K GR+ LFL GG+ M + Q
Sbjct: 346 KWGRRFLFLEGGVQMLICQ 364

Ricinus communis (taxid: 3988)

>sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/319 (57%), Positives = 240/319 (75%), Gaps = 2/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM  FLK+FFP VY+  +ED + + YC+++S  LT FTSS ++A LI+SL AS VTR
Sbjct: 46  GVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTR 105

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GR+ S+L GG+ F AG+ + G A +V+MLI+GR+LLG GIGF+NQ+VPLYLSEMAP K
Sbjct: 106 KFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYK 165

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA NIGFQ+   IG+L A +LNY   KIKGGWGWR+SL  A  PA I+T+G+L+LPDT
Sbjct: 166 YRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDT 225

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+I+R   HE+AK  L+R+RG  DV  E DDL+ AS  S++++HP++ +++RKYRP L
Sbjct: 226 PNSMIERGQ-HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHL 284

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
            MA++IPFFQQLTGINVI FYAPVLF TI  +   S LMSAVVTG V+  AT+ S+   D
Sbjct: 285 TMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDAS-LMSAVVTGSVNVAATLVSIYGVD 343

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           + GR+ LFL GG  M + Q
Sbjct: 344 RWGRRFLFLEGGTQMLICQ 362

Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/319 (57%), Positives = 236/319 (73%), Gaps = 3/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSMEPFL++FFP VYK M+   + + YC+F+SQLLT FTSS ++A L++SLFAS +TR
Sbjct: 46  GVTSMEPFLEEFFPYVYKKMK-SAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITR 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GRK S+ +GG  F  GSA  G A N+ ML++GR+LLG G+GF+NQSVP+YLSEMAPP 
Sbjct: 105 VFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPN 164

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
            RGAFN GFQV    G++ A ++NY T ++KG  GWRISL +A  PA ++ +GALILPDT
Sbjct: 165 LRGAFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDT 224

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+I+R    E+AK+MLQ +RGT +V  E  DLI AS  S+ VKHP++ I+  +YRPQL
Sbjct: 225 PNSLIERGY-TEEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQL 283

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           +M   IPFFQQLTGINVI+FYAPVLF+T+      SLL SA+VTG +  + T  S+   D
Sbjct: 284 IMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVD 342

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           + GR++LFL GGI M VSQ
Sbjct: 343 RFGRRILFLQGGIQMLVSQ 361

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1

 Score =  360 bits (923), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/320 (55%), Positives = 232/320 (72%), Gaps = 3/320 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTN-VSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVT 59
           GV SME FL KFFP+V + M+      + YCK++++LLT FTSS ++A L AS  AS +T
Sbjct: 47  GVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTIT 106

Query: 60  RALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPP 119
           R  GRK S+++G +AFL+G+ L G A N+ MLI+GR+ LGVG+GF+NQSVPLYLSEMAP 
Sbjct: 107 RLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPA 166

Query: 120 KHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD 179
           K RGA NIGFQ+   IG+L AN++NY T K++ G GWR+SL +A  PA ++ +G   LPD
Sbjct: 167 KIRGALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPD 226

Query: 180 TPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQ 239
           TPNSI++R N  EKAK+MLQ++RGT +V+ E ++L  A   ++ VKHP+  I+Q +YRPQ
Sbjct: 227 TPNSILERGN-KEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQ 285

Query: 240 LVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILT 299
           L     IPFFQQLTGINVI FYAPVLF+TI      SL+ SAV+TG V+ ++TI S+   
Sbjct: 286 LTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLSTIVSIYSV 344

Query: 300 DKLGRKVLFLVGGILMFVSQ 319
           DK GR+ LFL GG  M V+Q
Sbjct: 345 DKFGRRALFLQGGFQMIVTQ 364

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose.

Arabidopsis thaliana (taxid: 3702)

>sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1

 Score =  355 bits (910), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/319 (57%), Positives = 235/319 (73%), Gaps = 4/319 (1%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVT+M+ F +KFFP VY+  ++D + + YC+F+S  LT FTSS ++A L +SL AS VTR
Sbjct: 46  GVTTMDSFQQKFFPSVYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTR 105

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GRK S+L+GGV F AG+ L G A  V+MLI+GR+LLG GIGF+NQSVPLYLSEMAP K
Sbjct: 106 QFGRKISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYK 165

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA NIGFQ+   IG+L AN+LN+   KI   WGWR+SL  A  PA I+T+G+LILPDT
Sbjct: 166 YRGALNIGFQLSITIGILVANVLNFFFSKIS--WGWRLSLGGAVVPALIITVGSLILPDT 223

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+I+R      A+  L+++RG  D+  E++DLI AS  S+ V+HP++ ++QRKYRP L
Sbjct: 224 PNSMIERGQ-FRLAEAKLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHL 282

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
            MAILIP FQQLTGINVI FYAPVLF+TI    S + L+SAVVTG V+  AT+ S+   D
Sbjct: 283 TMAILIPAFQQLTGINVIMFYAPVLFQTIGFG-SDAALISAVVTGLVNVGATVVSIYGVD 341

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           K GR+ LFL GG  M +SQ
Sbjct: 342 KWGRRFLFLEGGFQMLISQ 360

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1

 Score =  354 bits (908), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 178/320 (55%), Positives = 232/320 (72%), Gaps = 4/320 (1%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSME FL KFFPEV K M E    + YCKF++QLL  FTSS ++A L +S  AS VTR
Sbjct: 48  GVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTR 107

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GRK S+ VGGVAFL GS     A NV MLI+GR+LLGVG+GF+NQS P+YLSEMAP K
Sbjct: 108 KYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAK 167

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
            RGA NIGFQ+   IG+L ANL+NYGT ++    GWR+SL +AA PA I+ +G+ +LPDT
Sbjct: 168 IRGALNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDT 226

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQR-KYRPQ 239
           PNS+++R   +E+A++MLQ++RG  +V  E  DL  A   ++ V +P++ I Q+ KYRP 
Sbjct: 227 PNSMLERGK-YEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPA 285

Query: 240 LVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILT 299
           LV    IPFFQQ+TGINVI FYAPVLF+T+  ++  SL+ SAV+TG V+ ++T+ S+   
Sbjct: 286 LVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLVSIYAV 344

Query: 300 DKLGRKVLFLVGGILMFVSQ 319
           D+ GR++LFL GGI M VSQ
Sbjct: 345 DRYGRRILFLEGGIQMIVSQ 364

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1

 Score =  350 bits (897), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 170/319 (53%), Positives = 234/319 (73%), Gaps = 3/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSME FL KFFP+V   M++  + + YCKF++Q+L  FTSS ++A L+AS  AS +TR
Sbjct: 48  GVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITR 107

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GRK S+ +GG+AFL G+     A NV MLI+GR+LLGVG+GF+NQS P+YLSEMAP K
Sbjct: 108 KHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAK 167

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
            RGA NIGFQ+   IG+L ANL+NYGT K+    GWR+SL +AA PA ++ +G+ ILPDT
Sbjct: 168 IRGALNIGFQMAITIGILVANLINYGTSKMAQH-GWRVSLGLAAVPAVVMVIGSFILPDT 226

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+++R   +E+AK+ML+++RG  +V  E  DLI A   ++ V++P++ I++ KYRP L
Sbjct: 227 PNSMLERGK-NEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPAL 285

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           +    IPFFQQ+TGINVI FYAPVLF+T+   +  + LMSAV+TG V+ ++T  S+   D
Sbjct: 286 IFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAA-LMSAVITGVVNMLSTFVSIYAVD 344

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           + GR++LFL GGI MF+ Q
Sbjct: 345 RYGRRLLFLEGGIQMFICQ 363

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2

 Score =  339 bits (869), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/320 (53%), Positives = 232/320 (72%), Gaps = 3/320 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNV-SNYCKFNSQLLTTFTSSPFIAGLIASLFASKVT 59
           GVTSM  FL+KFFP VY+ +    +  SNYCK+++Q L  FTSS ++AGL A+ FAS  T
Sbjct: 46  GVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTT 105

Query: 60  RALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPP 119
           R LGR+ ++L+ GV F+ G AL   A ++ MLI GR+LLG G+GF+NQ+VPL+LSE+AP 
Sbjct: 106 RTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPT 165

Query: 120 KHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD 179
           + RG  NI FQ+   IG+L ANL+NYGT KIKGGWGWR+SL +A  PA +LT+GAL++ +
Sbjct: 166 RIRGGLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTE 225

Query: 180 TPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQ 239
           TPNS+++R    E  K +L+R+RGT +V+ E  DL+ AS +++ VKHPF+ ++QR+ RPQ
Sbjct: 226 TPNSLVERGRLDE-GKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQ 284

Query: 240 LVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILT 299
           LV+A+ +  FQQ TGIN I FYAPVLF T+      S L SAVVTG V+ ++T+ S+   
Sbjct: 285 LVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDAS-LYSAVVTGAVNVLSTLVSIYSV 343

Query: 300 DKLGRKVLFLVGGILMFVSQ 319
           DK+GR+VL L  G+ MF SQ
Sbjct: 344 DKVGRRVLLLEAGVQMFFSQ 363

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
356517750	501	PREDICTED: hexose carrier protein HEX6-l	1.0	0.636	0.727	1e-135
357455795	509	Hexose carrier [Medicago truncatula] gi|	0.996	0.624	0.727	1e-133
224129904	516	predicted protein [Populus trichocarpa]	1.0	0.618	0.690	1e-133
255539853	510	sugar transporter, putative [Ricinus com	0.996	0.623	0.730	1e-133
1708191	510	RecName: Full=Hexose carrier protein HEX	0.996	0.623	0.727	1e-132
47078687	508	putative hexose transporter [Vitis vinif	0.996	0.625	0.717	1e-131
225466031	508	PREDICTED: hexose carrier protein HEX6 [	0.996	0.625	0.717	1e-131
147816021	508	hypothetical protein VITISV_025873 [Viti	0.996	0.625	0.714	1e-130
224139190	509	predicted protein [Populus trichocarpa]	0.996	0.624	0.727	1e-124
356515367	510	PREDICTED: hexose carrier protein HEX6-l	0.996	0.623	0.688	1e-122

>gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/319 (72%), Positives = 268/319 (84%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM PFL+KFFP+VY  M++DT VSNYCKF+SQLLT FTSS +IAGLIAS FAS VTR
Sbjct: 45  GVTSMVPFLEKFFPDVYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTR 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
           A GRK SIL+GG AFL G+ALGGAA N+YMLILGRV+LGVGIGF+NQS PLYLSEMAPP+
Sbjct: 105 AFGRKPSILIGGAAFLIGAALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPR 164

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA N GFQ+C  IGVL ANL+N+GT+KIK GWGWRISL MAA PAS+LT G+L LP+T
Sbjct: 165 YRGAINTGFQLCVGIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPET 224

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNSIIQ    H+KAK MLQR+RGT DVQ EL+DLI AS +S ++KHPF+ I+ RKYRPQL
Sbjct: 225 PNSIIQHDKNHQKAKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQL 284

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMAI IPFFQQ TGINVISFYAP+LF TI L ES SLL+SAVVTG V T +T  SM++ D
Sbjct: 285 VMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLLLSAVVTGFVGTASTFISMLMVD 344

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           +LGR+VLF+ GGI MF SQ
Sbjct: 345 RLGRRVLFISGGIQMFFSQ 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/319 (72%), Positives = 269/319 (84%), Gaps = 1/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM PFL+KFFP+VY  M++D  +SNYCKF+SQLLTTFTSS +IAGL+AS FAS +TR
Sbjct: 46  GVTSMVPFLEKFFPDVYTKMKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITR 105

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
           A GRK SILVGG AFL G+ALGGAA N+YMLILGRVLLGVGIGF+NQ+VPLYLSEMA P+
Sbjct: 106 AFGRKPSILVGGAAFLIGAALGGAALNIYMLILGRVLLGVGIGFANQAVPLYLSEMALPR 165

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA NIGFQ+C  IGVL ANL+N+GT+KIK GWGWRISL+MAA PA+ILTLGA  LP+T
Sbjct: 166 YRGAINIGFQLCVGIGVLSANLINFGTEKIKDGWGWRISLAMAAVPATILTLGAFFLPET 225

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNSIIQ S  H+KAK MLQ +RGT DVQ E +DLI ASI+S ++KHPF+ I+QRKYRPQL
Sbjct: 226 PNSIIQNSKNHQKAKLMLQSIRGTHDVQQEFEDLIEASIMSNSIKHPFKNILQRKYRPQL 285

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMAI IPFFQQ TGINVISFYAP+LF TI L ES SLL SAV+ G V T +T  SM++ D
Sbjct: 286 VMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLL-SAVMVGIVGTTSTFISMLIVD 344

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           KLGR+VLF+ GGI MF SQ
Sbjct: 345 KLGRRVLFISGGIQMFFSQ 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/326 (69%), Positives = 275/326 (84%), Gaps = 7/326 (2%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSMEPFLKKFFPEVY  M+EDT +SNYCKF+SQLLT+FTSS ++AGL+AS FAS +TR
Sbjct: 45  GVTSMEPFLKKFFPEVYARMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITR 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQS-------VPLYL 113
             GRK SIL GG AFL+GSAL GAA N+YMLI GRVLLGVG+GF+NQ+       VPLYL
Sbjct: 105 YFGRKPSILAGGAAFLSGSALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRRAVPLYL 164

Query: 114 SEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG 173
           SEMAPP++RGA N GFQ+C AIGVL AN +N+GT+KI+GGWGWRISL+M A PA+ LT+G
Sbjct: 165 SEMAPPRYRGAINNGFQLCIAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTIG 224

Query: 174 ALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQ 233
           +L LP+TPNS+IQR N  +KAK MLQR+RGT DV+AE +DLI+AS+VS++++HP + IIQ
Sbjct: 225 SLFLPETPNSLIQRFNDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSIEHPIKKIIQ 284

Query: 234 RKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATI 293
           +KYRPQLVMAI IPFFQQ+TGINVISFYAP+LFRTI LSES SL+MSA++ G V T +T 
Sbjct: 285 KKYRPQLVMAIAIPFFQQVTGINVISFYAPILFRTIGLSESVSLIMSALIAGVVGTASTF 344

Query: 294 TSMILTDKLGRKVLFLVGGILMFVSQ 319
            SM++ DKLGR+V+ + GG+ MFVSQ
Sbjct: 345 LSMLVVDKLGRRVMLICGGVQMFVSQ 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis]

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/319 (73%), Positives = 279/319 (87%), Gaps = 1/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM+PFLKKFFP+VY+ M+EDT +SNYCKF+SQLLT+FTSS ++AGL+AS FAS VTR
Sbjct: 45  GVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTR 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
           A GRK SIL+GG  FLAG+ALGGAA NVYMLI GRVLLGVG+GF+NQ+VPLYLSEMAPP+
Sbjct: 105 AFGRKPSILLGGAVFLAGAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPR 164

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA N GFQ    IG L ANL+NYGT+KI+GGWGWRISL+MAA PA+ILT GAL LP+T
Sbjct: 165 YRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPET 224

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+IQRSN HE+AK MLQRVRGT DVQAELDDLI+ASI+SRT++HPF+ I++RKYRPQL
Sbjct: 225 PNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQL 284

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMA+ IPFFQQ+TGINVI+FYAP+LFRTI L ES SLL S++VTG V + +T  SM++ D
Sbjct: 285 VMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVD 343

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           KLGR+ LF+ GG+ MFV+Q
Sbjct: 344 KLGRRALFIFGGVQMFVAQ 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/319 (72%), Positives = 278/319 (87%), Gaps = 1/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM+PFLKKFFP+VY+ M+EDT +SNYCKF+SQLLT+FTSS ++AGL+AS FAS VTR
Sbjct: 45  GVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTR 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
           A GRK SIL+GG  FLA +ALGGAA NVYMLI GRVLLGVG+GF+NQ+VPLYLSEMAPP+
Sbjct: 105 AFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPR 164

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA N GFQ    IG L ANL+NYGT+KI+GGWGWRISL+MAA PA+ILT GAL LP+T
Sbjct: 165 YRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPET 224

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+IQRSN HE+AK MLQRVRGT DVQAELDDLI+ASI+SRT++HPF+ I++RKYRPQL
Sbjct: 225 PNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQL 284

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMA+ IPFFQQ+TGINVI+FYAP+LFRTI L ES SLL S++VTG V + +T  SM++ D
Sbjct: 285 VMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVD 343

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           KLGR+ LF+ GG+ MFV+Q
Sbjct: 344 KLGRRALFIFGGVQMFVAQ 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/319 (71%), Positives = 271/319 (84%), Gaps = 1/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM+ FLKKFFPEVYK M+EDT +SNYCKF+SQLLT+FTSS +IAGL+AS  AS +T+
Sbjct: 45  GVTSMDSFLKKFFPEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITK 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GRK +IL GG AFL GSALGGAAFNVYM+ILGR+LLGVG+GF+NQ+VPLYLSEMAPP+
Sbjct: 105 KFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPR 164

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA N GFQ    +G L ANL+N+GT+KIKGGWGWR+SL++AA PASILTLGAL LP+T
Sbjct: 165 YRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPET 224

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+IQRS  + KA+ MLQRVRGT DVQAELDDL++AS +++T+  PF+ I+QRKYRPQL
Sbjct: 225 PNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQL 284

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMAI IPFFQQ+TGINVI+FYAPVLFR I L  S SLL SAVVTG V   +T  SM++ D
Sbjct: 285 VMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVD 343

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           KLGR+VLFLVGGI M VSQ
Sbjct: 344 KLGRRVLFLVGGIQMLVSQ 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/319 (71%), Positives = 271/319 (84%), Gaps = 1/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM+ FLKKFFPEVYK M+EDT +SNYCKF+SQLLT+FTSS +IAGL+AS  AS +T+
Sbjct: 45  GVTSMDSFLKKFFPEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITK 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GRK +IL GG AFL GSALGGAAFNVYM+ILGR+LLGVG+GF+NQ+VPLYLSEMAPP+
Sbjct: 105 KFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPR 164

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA N GFQ    +G L ANL+N+GT+KIKGGWGWR+SL++AA PASILTLGAL LP+T
Sbjct: 165 YRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPET 224

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+IQRS  + KA+ MLQRVRGT DVQAELDDL++AS +++T+  PF+ I+QRKYRPQL
Sbjct: 225 PNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQL 284

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMAI IPFFQQ+TGINVI+FYAPVLFR I L  S SLL SAVVTG V   +T  SM++ D
Sbjct: 285 VMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVD 343

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           KLGR+VLFLVGGI M VSQ
Sbjct: 344 KLGRRVLFLVGGIQMLVSQ 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/319 (71%), Positives = 270/319 (84%), Gaps = 1/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSM+ FLKKFFP VYK M+EDT +SNYCKF+SQLLT+FTSS +IAGL+AS  AS +T+
Sbjct: 45  GVTSMDSFLKKFFPXVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITK 104

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
             GRK +IL GG AFL GSALGGAAFNVYM+ILGR+LLGVG+GF+NQ+VPLYLSEMAPP+
Sbjct: 105 KFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPR 164

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA N GFQ    +G L ANL+N+GT+KIKGGWGWR+SL++AA PASILTLGAL LP+T
Sbjct: 165 YRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPET 224

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+IQRS  + KA+ MLQRVRGT DVQAELDDL++AS +++T+  PF+ I+QRKYRPQL
Sbjct: 225 PNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQL 284

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMAI IPFFQQ+TGINVI+FYAPVLFR I L  S SLL SAVVTG V   +T  SM++ D
Sbjct: 285 VMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVD 343

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           KLGR+VLFLVGGI M VSQ
Sbjct: 344 KLGRRVLFLVGGIQMLVSQ 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/319 (72%), Positives = 277/319 (86%), Gaps = 1/319 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
           GVTSMEPFL+KFFP+VY+ M+EDT +SNYCKF+SQLLT+FTSS ++AG IAS FAS +T+
Sbjct: 46  GVTSMEPFLEKFFPKVYRKMKEDTEISNYCKFDSQLLTSFTSSMYVAGFIASFFASSITK 105

Query: 61  ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK 120
           A GRK SIL+GG AFLAG+ALGGAAFNVYMLI GRVLLGVG+GF+NQ+VPLYLSEMAPP+
Sbjct: 106 AFGRKPSILLGGAAFLAGAALGGAAFNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPR 165

Query: 121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
           +RGA N GFQ    IG L ANL+NYGT+KIKGGWGWRISL++AA PA+ILTLGA+ LP+T
Sbjct: 166 YRGAINNGFQFSIGIGALSANLINYGTEKIKGGWGWRISLALAAVPATILTLGAVFLPET 225

Query: 181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
           PNS+IQ ++  E+AK MLQRVRGT DVQAELDDLI+AS +S+TV+HPF+ II+RKYRPQL
Sbjct: 226 PNSLIQLTDDTERAKLMLQRVRGTEDVQAELDDLIKASSISKTVEHPFKKIIKRKYRPQL 285

Query: 241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
           VMAI IPFFQQ+TGINVI+FYAP+LFRTI L ES S LMS+VVTG V T +T  SM++ D
Sbjct: 286 VMAIAIPFFQQVTGINVIAFYAPILFRTIGLGESAS-LMSSVVTGIVGTGSTFISMLVVD 344

Query: 301 KLGRKVLFLVGGILMFVSQ 319
           KLGR+ LF+ GG+ M VSQ
Sbjct: 345 KLGRRALFIFGGVQMLVSQ 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/321 (68%), Positives = 266/321 (82%), Gaps = 3/321 (0%)

Query: 1   GVTSMEPFLKKFFPEVYKNMR-EDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVT 59
           GVTSMEPFLKKFF +VY  M+  D  VSNYC F+SQLLT+FTSS ++AGL+ S FAS +T
Sbjct: 45  GVTSMEPFLKKFFHKVYLKMKLADDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYIT 104

Query: 60  RALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPP 119
           +A GRK SI+VGG AFLAG+ LGGAAFNVYMLI+GR+LLGVG+GF+NQ+VPLYLSEMA P
Sbjct: 105 KAFGRKPSIVVGGAAFLAGTGLGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALP 164

Query: 120 KHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD 179
           + RGA N GFQ+   IG L ANL+NYGT+KI+GGWGWR+SL+MAA PAS+LTLGAL LP+
Sbjct: 165 RLRGAINNGFQLSIGIGALSANLINYGTEKIEGGWGWRMSLAMAAVPASVLTLGALFLPE 224

Query: 180 TPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRT-VKHPFQTIIQRKYRP 238
           TPNS+IQRS+  +KAK MLQR+RG  DVQAELDDLI+AS  S+T  K   + I++ +YRP
Sbjct: 225 TPNSVIQRSHDKQKAKLMLQRIRGMEDVQAELDDLIKASSPSKTNNKQSLKLILKGRYRP 284

Query: 239 QLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMIL 298
           QLVMA+ IPFFQQ+TGINVI+FYAP+LFRTI L ES SLL SAV+TG V T +T  SM +
Sbjct: 285 QLVMALAIPFFQQVTGINVIAFYAPLLFRTIGLGESASLL-SAVMTGVVGTGSTFISMFV 343

Query: 299 TDKLGRKVLFLVGGILMFVSQ 319
            DKLGR+ LF++GGI MFVSQ
Sbjct: 344 VDKLGRRTLFMIGGIQMFVSQ 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2151596	514	AT5G61520 [Arabidopsis thalian	0.990	0.614	0.567	2.6e-86
TAIR|locus:2202044	522	STP1 "AT1G11260" [Arabidopsis	0.993	0.607	0.523	3.1e-83
TAIR|locus:2092286	514	STP4 "sugar transporter 4" [Ar	0.987	0.612	0.525	1.5e-81
TAIR|locus:2166781	514	STP11 "sugar transporter 11" [	0.993	0.616	0.496	1e-77
TAIR|locus:2011957	517	STP9 "sugar transporter 9" [Ar	0.990	0.611	0.493	8.1e-76
TAIR|locus:2092221	514	AT3G19940 [Arabidopsis thalian	0.990	0.614	0.479	4.5e-75
TAIR|locus:2151074	526	MSS1 "AT5G26340" [Arabidopsis	0.993	0.602	0.478	3.1e-74
TAIR|locus:2132213	513	STP7 "sugar transporter protei	0.987	0.614	0.463	9.6e-73
TAIR|locus:2195995	504	STP14 "sugar transport protein	0.981	0.621	0.463	8.9e-70
TAIR|locus:2009323	506	AT1G34580 [Arabidopsis thalian	0.981	0.618	0.446	1.9e-67

TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 184/324 (56%), Positives = 226/324 (69%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDT----NVSN-YCKFNSQLLTTFTSSPFIAGLIASLFA 55
             GV SM PFLK+FFP+VYK   ED     N +N YC FNSQLLT+FTSS +++GLIA+L A
Sbjct:    47 GVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLA 106

Query:    56 SKVTRALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSE 115
             S VTR+ GRK SI                  NV M             F+NQSVPLYLSE
Sbjct:   107 SSVTRSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSE 166

Query:   116 MAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGAL 175
             MAP K+RGA + GFQ+C  IG L AN++NY TQ IK GW  RISL+ AA PASILTLG+L
Sbjct:   167 MAPAKYRGAISNGFQLCIGIGFLSANVINYETQNIKHGW--RISLATAAIPASILTLGSL 224

Query:   176 ILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRK 235
              LP+TPNSIIQ +    K + ML+RVRGT DVQ EL DL+ AS  S T  + F  ++QRK
Sbjct:   225 FLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRK 284

Query:   236 YRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITS 295
             YRP+LVMA++IPFFQQ+TGINV++FYAPVL+RT+   ES SL MS +VTG V T +T+ S
Sbjct:   285 YRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSL-MSTLVTGIVGTSSTLLS 343

Query:   296 MILTDKLGRKVLFLVGGILMFVSQ 319
             M++ D++GRK LFL+GG+ M VSQ
Sbjct:   344 MLVVDRIGRKTLFLIGGLQMLVSQ 367

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 167/319 (52%), Positives = 217/319 (68%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
             GVTSM  FLK+FFP VY+  +ED + + YC+++S  LT FTSS ++A LI+SL AS VTR
Sbjct:    46 GVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTR 105

Query:    61 ALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPPK 120
               GR+ S+                  +V+M             F+NQ+VPLYLSEMAP K
Sbjct:   106 KFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYK 165

Query:   121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
             +RGA NIGFQ+   IG+L A +LNY   KIKGGWGWR+SL  A  PA I+T+G+L+LPDT
Sbjct:   166 YRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDT 225

Query:   181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
             PNS+I+R   HE+AK  L+R+RG  DV  E DDL+ AS  S++++HP++ +++RKYRP L
Sbjct:   226 PNSMIERGQ-HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHL 284

Query:   241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
              MA++IPFFQQLTGINVI FYAPVLF TI  +   SL MSAVVTG V+  AT+ S+   D
Sbjct:   285 TMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASL-MSAVVTGSVNVAATLVSIYGVD 343

Query:   301 KLGRKVLFLVGGILMFVSQ 319
             + GR+ LFL GG  M + Q
Sbjct:   344 RWGRRFLFLEGGTQMLICQ 362

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 168/320 (52%), Positives = 217/320 (67%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
             GVTSMEPFL++FFP VYK M+   + + YC+F+SQLLT FTSS ++A L++SLFAS +TR
Sbjct:    46 GVTSMEPFLEEFFPYVYKKMKS-AHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITR 104

Query:    61 ALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPPK 120
               GRK S+                  N+ M             F+NQSVP+YLSEMAPP 
Sbjct:   105 VFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPN 164

Query:   121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
              RGAFN GFQV    G++ A ++NY T ++KG  GWRISL +A  PA ++ +GALILPDT
Sbjct:   165 LRGAFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDT 224

Query:   181 PNSIIQRSNGH-EKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQ 239
             PNS+I+R  G+ E+AK+MLQ +RGT +V  E  DLI AS  S+ VKHP++ I+  +YRPQ
Sbjct:   225 PNSLIER--GYTEEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQ 282

Query:   240 LVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILT 299
             L+M   IPFFQQLTGINVI+FYAPVLF+T+      SLL SA+VTG +  + T  S+   
Sbjct:   283 LIMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTV 341

Query:   300 DKLGRKVLFLVGGILMFVSQ 319
             D+ GR++LFL GGI M VSQ
Sbjct:   342 DRFGRRILFLQGGIQMLVSQ 361

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015770 "sucrose transport" evidence=TAS

TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 159/320 (49%), Positives = 207/320 (64%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDTN-VSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVT 59
             GV SME FL KFFP+V + M+      + YCK++++LLT FTSS ++A L AS  AS +T
Sbjct:    47 GVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTIT 106

Query:    60 RALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPP 119
             R  GRK S+                  N+ M             F+NQSVPLYLSEMAP 
Sbjct:   107 RLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPA 166

Query:   120 KHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD 179
             K RGA NIGFQ+   IG+L AN++NY T K++ G GWR+SL +A  PA ++ +G   LPD
Sbjct:   167 KIRGALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPD 226

Query:   180 TPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQ 239
             TPNSI++R N  EKAK+MLQ++RGT +V+ E ++L  A   ++ VKHP+  I+Q +YRPQ
Sbjct:   227 TPNSILERGN-KEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQ 285

Query:   240 LVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILT 299
             L     IPFFQQLTGINVI FYAPVLF+TI      SL+ SAV+TG V+ ++TI S+   
Sbjct:   286 LTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLSTIVSIYSV 344

Query:   300 DKLGRKVLFLVGGILMFVSQ 319
             DK GR+ LFL GG  M V+Q
Sbjct:   345 DKFGRRALFLQGGFQMIVTQ 364

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 158/320 (49%), Positives = 209/320 (65%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
             GVTSME FL KFFPEV K M E    + YCKF++QLL  FTSS ++A L +S  AS VTR
Sbjct:    48 GVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTR 107

Query:    61 ALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPPK 120
               GRK S+                  NV M             F+NQS P+YLSEMAP K
Sbjct:   108 KYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAK 167

Query:   121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
              RGA NIGFQ+   IG+L ANL+NYGT ++    GWR+SL +AA PA I+ +G+ +LPDT
Sbjct:   168 IRGALNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDT 226

Query:   181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQR-KYRPQ 239
             PNS+++R   +E+A++MLQ++RG  +V  E  DL  A   ++ V +P++ I Q+ KYRP 
Sbjct:   227 PNSMLERGK-YEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPA 285

Query:   240 LVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILT 299
             LV    IPFFQQ+TGINVI FYAPVLF+T+  ++  SL+ SAV+TG V+ ++T+ S+   
Sbjct:   286 LVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLVSIYAV 344

Query:   300 DKLGRKVLFLVGGILMFVSQ 319
             D+ GR++LFL GGI M VSQ
Sbjct:   345 DRYGRRILFLEGGIQMIVSQ 364

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 153/319 (47%), Positives = 211/319 (66%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
             GVTSME FL KFFP+V   M++  + + YCKF++Q+L  FTSS ++A L+AS  AS +TR
Sbjct:    48 GVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITR 107

Query:    61 ALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPPK 120
               GRK S+                  NV M             F+NQS P+YLSEMAP K
Sbjct:   108 KHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAK 167

Query:   121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
              RGA NIGFQ+   IG+L ANL+NYGT K+    GWR+SL +AA PA ++ +G+ ILPDT
Sbjct:   168 IRGALNIGFQMAITIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDT 226

Query:   181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
             PNS+++R   +E+AK+ML+++RG  +V  E  DLI A   ++ V++P++ I++ KYRP L
Sbjct:   227 PNSMLERGK-NEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPAL 285

Query:   241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
             +    IPFFQQ+TGINVI FYAPVLF+T+   +  +L MSAV+TG V+ ++T  S+   D
Sbjct:   286 IFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAAL-MSAVITGVVNMLSTFVSIYAVD 344

Query:   301 KLGRKVLFLVGGILMFVSQ 319
             + GR++LFL GGI MF+ Q
Sbjct:   345 RYGRRLLFLEGGIQMFICQ 363

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 153/320 (47%), Positives = 211/320 (65%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDTNV-SNYCKFNSQLLTTFTSSPFIAGLIASLFASKVT 59
             GVTSM  FL+KFFP VY+ +    +  SNYCK+++Q L  FTSS ++AGL A+ FAS  T
Sbjct:    46 GVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTT 105

Query:    60 RALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPP 119
             R LGR+ ++                  ++ M             F+NQ+VPL+LSE+AP 
Sbjct:   106 RTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPT 165

Query:   120 KHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD 179
             + RG  NI FQ+   IG+L ANL+NYGT KIKGGWGWR+SL +A  PA +LT+GAL++ +
Sbjct:   166 RIRGGLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTE 225

Query:   180 TPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQ 239
             TPNS+++R    E  K +L+R+RGT +V+ E  DL+ AS +++ VKHPF+ ++QR+ RPQ
Sbjct:   226 TPNSLVERGRLDE-GKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQ 284

Query:   240 LVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILT 299
             LV+A+ +  FQQ TGIN I FYAPVLF T+      SL  SAVVTG V+ ++T+ S+   
Sbjct:   285 LVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLY-SAVVTGAVNVLSTLVSIYSV 343

Query:   300 DKLGRKVLFLVGGILMFVSQ 319
             DK+GR+VL L  G+ MF SQ
Sbjct:   344 DKVGRRVLLLEAGVQMFFSQ 363

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005358 "high-affinity hydrogen:glucose symporter activity" evidence=IDA

GO:0009679 "hexose:hydrogen symporter activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 148/319 (46%), Positives = 213/319 (66%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
             GVTSM+ FL++FF  VY+  ++  + SNYCK+++Q L  FTSS ++AGL+++L AS +TR
Sbjct:    50 GVTSMDEFLEEFFHTVYEKKKQ-AHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITR 108

Query:    61 ALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPPK 120
               GR+ASI                  N+ M             F NQ+VPLYLSE+AP  
Sbjct:   109 NYGRRASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTH 168

Query:   121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
              RG  N+ FQ+ T IG+  AN++NYGTQ++K  WGWR+SL +AA PA ++TLG   LP+T
Sbjct:   169 LRGGLNMMFQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPET 227

Query:   181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
             PNS+++R    E+ +++L ++RGT +V AEL D++ AS ++ ++KHPF+ I+Q+++RPQL
Sbjct:   228 PNSLVERGLT-ERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQL 286

Query:   241 VMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD 300
             VMAI +P FQ LTGIN I FYAPVLF+T+    + SL  SA+ TG V  ++T  S+ L D
Sbjct:   287 VMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSAL-TGAVLVLSTFISIGLVD 345

Query:   301 KLGRKVLFLVGGILMFVSQ 319
             +LGR+ L + GGI M + Q
Sbjct:   346 RLGRRALLITGGIQMIICQ 364

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 147/317 (46%), Positives = 203/317 (64%)

Query:     1 GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
             GVTSM+ FLK+FFP +YK  +   N ++YCK+++Q+LT FTSS + AGLI++  AS VTR
Sbjct:    49 GVTSMDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTR 108

Query:    61 ALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPPK 120
               GR+ SI                  N+ M             F NQ+VPLYLSEMAP K
Sbjct:   109 IYGRRGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAK 168

Query:   121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT 180
              RG  N  FQ+ T IG+L ANL+NY T++I   WGWR+SL +A  PA ++ LG L+LP+T
Sbjct:   169 IRGTVNQLFQLTTCIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPET 227

Query:   181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQL 240
             PNS++++    EKAK +L +VRGT +++AE  DL+ AS  +R VK+PF+ ++ R+ RPQL
Sbjct:   228 PNSLVEQGK-LEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQL 286

Query:   241 VM-AILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILT 299
             V+ AI +P FQQLTG+N I FYAPV+F+++    S SL+ S+ +T     +A I SM   
Sbjct:   287 VIGAIGLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLI-SSTITNAALVVAAIMSMYSA 345

Query:   300 DKLGRKVLFLVGGILMF 316
             DK GR+ L L   + MF
Sbjct:   346 DKFGRRFLLLEASVEMF 362

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IGI

TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 145/325 (44%), Positives = 211/325 (64%)

Query:     1 GVTSMEPFLKKFFPEVYKNMRE-DTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVT 59
             GVT+M+PFL+KFFP V K   E  TNV  YC ++SQLLT FTSS ++AGL+ASL AS++T
Sbjct:    47 GVTTMKPFLEKFFPSVLKKASEAKTNV--YCVYDSQLLTAFTSSLYVAGLVASLVASRLT 104

Query:    60 RALGRKASIXXXXXXXXXXXXXXXXXXNVYMXXXXXXXXXXXXXFSNQSVPLYLSEMAPP 119
              A GR+ ++                  N+ M             F+NQ+ P+YLSE+APP
Sbjct:   105 AAYGRRTTMILGGFTFLFGALINGLAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPP 164

Query:   120 KHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD 179
             + RGAFNIGF    ++GV+ ANL+NYGT   + GW  RISL +AA PA+I+T+G L + D
Sbjct:   165 RWRGAFNIGFSCFISMGVVAANLINYGTDSHRNGW--RISLGLAAVPAAIMTVGCLFISD 222

Query:   180 TPNSIIQRSNGHEKAKKMLQRVRGT---ADVQAELDDLIRASIVSRTVKHPF--QTIIQR 234
             TP+S++ R   H++A   L ++RG    ADV+ EL +L+R+S ++   +     +TI+QR
Sbjct:   223 TPSSLLARGK-HDEAHTSLLKLRGVENIADVETELAELVRSSQLAIEARAELFMKTILQR 281

Query:   235 KYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATIT 294
             +YRP LV+A++IP FQQLTGI V +FYAPVLFR++      +L+ + ++ G V+  + + 
Sbjct:   282 RYRPHLVVAVVIPCFQQLTGITVNAFYAPVLFRSVGFGSGPALIATFIL-GFVNLGSLLL 340

Query:   295 SMILTDKLGRKVLFLVGGILMFVSQ 319
             S ++ D+ GR+ LF+ GGILM + Q
Sbjct:   341 STMVIDRFGRRFLFIAGGILMLLCQ 365

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7R8	STP3_ARATH	No assigned EC number	0.6265	0.9905	0.6147	yes	no
Q07423	HEX6_RICCO	No assigned EC number	0.7272	0.9968	0.6235	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HT4	SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002307001	SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa)							•		0.481
	VvSUC11	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	8e-65
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	8e-51
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-28
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-14
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-12
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-11
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-09
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-06
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	2e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	8e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-05
PRK15075	434	PRK15075, PRK15075, citrate-proton symporter; Prov	4e-04
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	8e-04
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	0.001
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  210 bits (537), Expect = 8e-65
 Identities = 105/322 (32%), Positives = 171/322 (53%), Gaps = 19/322 (5%)

Query: 1   GVTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTR 60
              ++  F K+F           + V         L     S   +  LI SLFA K+  
Sbjct: 21  AFLTLIKFFKRFGALTSIGACAASTV---------LSGLIVSIFSVGCLIGSLFAGKLGD 71

Query: 61  ALGRKASILVGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAP 118
             GRK S+L+G V F+ G+ L G A   + YMLI+GRV++G+G+G  +  VP+Y+SE+AP
Sbjct: 72  RFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAP 131

Query: 119 PKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILP 178
            K RGA    +Q+    G+L A ++  G  K     GWRI L +   PA +L +G L LP
Sbjct: 132 KKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLP 191

Query: 179 DTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASI---VSRTVKHPFQTIIQRK 235
           ++P  ++ +    E+A+ +L ++RG +DV  E+ +  + S+   V        +    + 
Sbjct: 192 ESPRWLVLKGK-LEEARAVLAKLRGVSDVDQEIQE-EKDSLERSVEAEKASWLELFRGKT 249

Query: 236 YRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITS 295
            R +L+M +++  FQQLTGIN I +Y+P +F T+ LS+S    +  ++ G V+ + T  +
Sbjct: 250 VRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL---LVTIIVGVVNFVFTFIA 306

Query: 296 MILTDKLGRKVLFLVGGILMFV 317
           + L D+ GR+ L L+G   M +
Sbjct: 307 IFLVDRFGRRPLLLLGAAGMAI 328

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  174 bits (443), Expect = 8e-51
 Identities = 98/286 (34%), Positives = 155/286 (54%), Gaps = 12/286 (4%)

Query: 40  FTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA---AFNVYMLILGRV 96
             S   + G I +LFA  ++   GRK S+L+  + F+ G+ L G    A +V MLI+GRV
Sbjct: 76  VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRV 135

Query: 97  LLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGW 156
           LLG+G+G ++  VP+YLSE+AP   RGA    +Q+    G+L A     G   +    GW
Sbjct: 136 LLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195

Query: 157 RISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIR 216
           RI L +   PA +L LG   LP++P  ++ +    E+A+K L R+RGT+    EL D + 
Sbjct: 196 RIPLGLQLIPAGLLFLGLFFLPESPRWLVGK-GRVEEARKSLARLRGTSGEDKELLDELE 254

Query: 217 ASIVSRTVKHPFQTI-------IQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTI 269
              + R+++               R+ R +L + +++ +FQQ TGIN I +Y+P +F   
Sbjct: 255 LIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA 314

Query: 270 KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM 315
            +S   + L+S +V G V+   T  ++ L D+ GR+ L L+G   M
Sbjct: 315 GVSTDHAFLVSIIV-GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGM 359

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  114 bits (287), Expect = 1e-28
 Identities = 78/310 (25%), Positives = 138/310 (44%), Gaps = 55/310 (17%)

Query: 42  SSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA----------------- 84
           +S  I  +I        +   GR+ S+ +  V F   SALG A                 
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI-SALGSAWPEFGFTSIGPDNTGYV 120

Query: 85  -AFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRG---AFNIGFQVCTAIGVLGA 140
             F +Y     R++ G+G+G ++   P+Y++E+AP   RG   +FN   Q     G L  
Sbjct: 121 PEFVIY-----RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFN---QFAIIFGQLVV 172

Query: 141 NLLNYGTQKIKGG----W----GWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHE 192
             +NY    I       W    GWR   +  A PA +  +    +P+TP  ++ R    E
Sbjct: 173 YFVNYF---IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSR-GKQE 228

Query: 193 KAKKMLQRVRGTADVQAELDDLIRASIVSRTVKH----PFQTIIQRKYRPQLVMAILIPF 248
           +A+ +L+++ G       L + I+ S+            F   +       +V+ +++  
Sbjct: 229 QAEGILRKIMGNTLATQALQE-IKHSLDHGRKTGGKLLMFGVGV-------IVIGVMLSV 280

Query: 249 FQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLF 308
           FQQ  GINV+ +YAP +F+T+  S   + L+  ++ G ++   T+ +++  DK GRK L 
Sbjct: 281 FQQFVGINVVLYYAPEIFKTLGASTDIA-LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 339

Query: 309 LVGGILMFVS 318
           ++G + M + 
Sbjct: 340 IIGALGMAIG 349

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 32  FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYML 91
            ++       S+  +   + SL A  ++   GR+  +L+G + F  GS L   A ++++L
Sbjct: 31  LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90

Query: 92  ILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIK 151
           ++GR LLG+G G    +    ++E  PPK RG     F     +G L   LL     +  
Sbjct: 91  LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES- 149

Query: 152 GGWGWRISLSMAAAPASILTLGALILP 178
              GWR    + A    +L L  L L 
Sbjct: 150 --LGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 62/299 (20%), Positives = 122/299 (40%), Gaps = 32/299 (10%)

Query: 33  NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLI 92
           ++  +    S  F+  L+ S     ++   GRK  +L+  +       L   + N  + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184

Query: 93  LGRVLLGVGI-GFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIK 151
           + R+L+G+GI G   Q+V L   E  P K R       QV  ++G++   L+ Y      
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--- 240

Query: 152 GGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQ--- 208
               WR      + P  +  L +  +P++P  +I +    E+A K+LQR+      +   
Sbjct: 241 ---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRI-EEALKILQRIAKINGKKLPA 296

Query: 209 ----AELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPV 264
                 L+  + +S    +    F+T      R   +  +++ F          S+Y  V
Sbjct: 297 EVLSLSLEKDLSSSKKQYSFLDLFRT---PNLRKTTLCLMMLWF------TTAFSYYGLV 347

Query: 265 LFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRK----VLFLVGGILMFVSQ 319
           L     L    ++ +   ++G V   A + +++L D+LGR+       L+ G+ + +  
Sbjct: 348 LD-LGNLG--GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL 403

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 52/278 (18%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 41  TSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGV 100
            ++  +   +A   A +++   GR+  +L+G + F  G  L   A ++++L++ RVL G+
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 101 GIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISL 160
           G G    +    +++  PP+ RG           +G     LL      +   +GWR + 
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL---LASLFGWRAAF 154

Query: 161 SMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIV 220
            + A  A +  + A +L   P    +R    E+A   L                      
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPL---------------------- 192

Query: 221 SRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMS 280
                        +      V+ +L+           +  Y P+    + LS   + L+ 
Sbjct: 193 ---------VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLL 243

Query: 281 AVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVS 318
             + G +  I  +    L+D+LGR+   L+  +L+ ++
Sbjct: 244 G-LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILA 280

Length = 346

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 26/287 (9%)

Query: 42  SSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVG 101
           S+  I     +LF   +   +GR+  +L   + F   + L   A NV  L++ R L G+G
Sbjct: 59  SAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLG 118

Query: 102 IGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGW-----GW 156
           +G    ++   +SE AP + RG           IG      L         GW     GW
Sbjct: 119 LGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL--------AGWLIPVFGW 170

Query: 157 RISLSMAA-APASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTAD-VQAELDDL 214
           R    +   AP  +L L    LP++ + ++ +     + + + + V   A  +QAE    
Sbjct: 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-----RPETVRRIVNAIAPQMQAEAQSA 225

Query: 215 IRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSES 274
           +     ++  K      + +    ++ + + + +F  L G+  ++ + P L   +  S S
Sbjct: 226 LPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLS 285

Query: 275 TSLLMSAVV-TGGVSTIATITSMILTDKLGRKV---LFLVGGILMFV 317
            +    A+   GGV  I +I    L D+LG +V   L L+G +   +
Sbjct: 286 LAATGGALFNFGGV--IGSIIFGWLADRLGPRVTALLLLLGAVFAVL 330

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 36  LLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGR 95
           LL  +     I   ++ L   +     GRK  +LVG   F+  +A+   + N+ +LI+ R
Sbjct: 3   LLAGYALGQLIYSPLSGLLTDRF----GRKPVLLVGLFIFVLSTAMFALSSNITVLIIAR 58

Query: 96  VLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWG 155
            L G G  F+  +    ++++ PP+ RG          A+G L    L      +    G
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL---GGVLAQFLG 115

Query: 156 WRISLSMAAAPASI-LTLGALILPDT 180
           WR      A  A     L A +LP+T
Sbjct: 116 WRAPFLFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 63/299 (21%), Positives = 120/299 (40%), Gaps = 48/299 (16%)

Query: 34  SQLLTTFT--SSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG-------- 83
             LL TF   ++ F+A  + ++        +GRK ++++  +    G+ L G        
Sbjct: 32  VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATI 91

Query: 84  AAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL 143
             +   +L+L R++ G  +G       LYL+E APP  RG +    QV   +G+L A L 
Sbjct: 92  GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALT 151

Query: 144 NYGTQKIKGG-----WGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKML 198
                 + G      WGWRI   ++A    +L L  L L         R N  E      
Sbjct: 152 VLLLSYLLGDDALLEWGWRIPFLVSA----VLVLIGLYL---------RRNLEETPVFEK 198

Query: 199 QRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVI 258
            + +                   +  + P    +  K+R   ++ + +      T   + 
Sbjct: 199 AQEKH------------------KKKRGPIAETL-TKHRKPFLLGLGLVIATTTTFYLIT 239

Query: 259 SFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV 317
           ++    L +T+ LS +++LL+  +    +  I    S  L+D++GR+ + ++  +L  +
Sbjct: 240 TYLPTYLTQTLGLSANSALLVLMLS-LILFFITIPLSGALSDRIGRRPVLIIFTVLAAL 297

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 46  IAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFS 105
           +   + +   + +T  L R+  +L     F+  + L   A +  +L+L R L G+  G  
Sbjct: 59  LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118

Query: 106 NQSVPLYLSEMAPPKHRGA----FNIGFQVCTAIGV-LGANLLNYGTQKIKGGWGWRISL 160
                   + + PP  RG        G  + T +GV LG  L           +GWR + 
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL--------FGWRATF 170

Query: 161 SMAAAPASILTLGALIL 177
              A  A +  L    L
Sbjct: 171 LAIAVLALLALLLLWKL 187

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 32  FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLA-GSALGGAAFNVYM 90
            ++       S   + G++ +L    ++  LGR+  +L+ G+   A G  L   A ++ +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267

Query: 91  LILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKI 150
           L++  +LLG G+GF+  ++    SE+APP+ RG  +  F    ++G     LL      +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLL 324

Query: 151 KGGWGWRISLSMAAAPASILTLGALILP 178
               G+     + AA A +  L  L+LP
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 73  VAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVC 132
           +AF+ G A  G A  + +L+ GR+L G   G     V +YL+E+A P  +G F   +Q  
Sbjct: 103 IAFVPGYATIGLAAPLLVLL-GRLLQGFSAGVELGGVSVYLAEIATPGRKG-FYTSWQSA 160

Query: 133 T-AIGVLGANLLNYG-----TQKIKGGWGWRI 158
           +  + V+ A LL Y      +      WGWRI
Sbjct: 161 SQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192

Length = 434

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 52/272 (19%), Positives = 87/272 (31%), Gaps = 28/272 (10%)

Query: 45  FIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGF 104
           F  G +   F ++ T A+     I++ GV     + L   A     L + RVLLG     
Sbjct: 47  FPGGWLLDRFGARKTLAV----FIVIWGVF----TGLQAFAGAYVSLYILRVLLGAAEAP 98

Query: 105 SNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAA 164
               + L ++   P   R      F     +G +    L      I   W W   +    
Sbjct: 99  FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-IHFSWQWAFIIEG-- 155

Query: 165 APASILTLGALI-LPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRT 223
               I  +  L  +PD P          +KAK +      T + +  +   + A    + 
Sbjct: 156 VLGIIWGVLWLKFIPDPP----------QKAKWL------TEEEKYIVVGGLLAEQQGKG 199

Query: 224 VKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVV 283
              P +  I+   + + V  + +  F    G+     + P      +          A +
Sbjct: 200 PSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASL 259

Query: 284 TGGVSTIATITSMILTDKLGRKVLFLVGGILM 315
            G V  I  I    L+D L R+   LV     
Sbjct: 260 PGIVGFIGMILGGRLSDLLLRRGKSLVFARKT 291

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 34  SQLLTTFTSSPFIAGLIAS-LFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLI 92
           +QL   F  S ++AG+ A+ LFA K+    GRK   + G   F+  S L   A    + +
Sbjct: 38  AQLHIAF--SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFL 95

Query: 93  LGRVLLGVGIGF 104
            GR L G+G G 
Sbjct: 96  AGRFLQGIGAGC 107

Length = 392

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 16/80 (20%), Positives = 37/80 (46%)

Query: 238 PQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMI 297
            +L++ + + FF    G   +  Y P+  + +    +    +   + G    +  +   +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233

Query: 298 LTDKLGRKVLFLVGGILMFV 317
           L+D+LGR+ L L+ G+L+  
Sbjct: 234 LSDRLGRRRLLLLIGLLLAA 253

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.96
TIGR00898	505	2A0119 cation transport protein.	99.96
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.96
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.95
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.95
PRK09952	438	shikimate transporter; Provisional	99.95
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.94
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.94
TIGR00891	405	2A0112 putative sialic acid transporter.	99.93
PRK15075	434	citrate-proton symporter; Provisional	99.93
PRK12307	426	putative sialic acid transporter; Provisional	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.9
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.9
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.9
PRK03545	390	putative arabinose transporter; Provisional	99.9
PRK09705	393	cynX putative cyanate transporter; Provisional	99.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
TIGR00893	399	2A0114 d-galactonate transporter.	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
PRK11663	434	regulatory protein UhpC; Provisional	99.89
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.89
PRK03893	496	putative sialic acid transporter; Provisional	99.89
PRK03699	394	putative transporter; Provisional	99.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.88
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
TIGR00900	365	2A0121 H+ Antiporter protein.	99.88
KOG2533	495	consensus Permease of the major facilitator superf	99.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.87
PLN00028	476	nitrate transmembrane transporter; Provisional	99.87
KOG2532	466	consensus Permease of the major facilitator superf	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.86
PRK10504	471	putative transporter; Provisional	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.85
PRK11043	401	putative transporter; Provisional	99.85
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.85
TIGR00805	633	oat sodium-independent organic anion transporter.	99.85
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.85
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.84
PRK05122	399	major facilitator superfamily transporter; Provisi	99.84
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.83
PRK12382	392	putative transporter; Provisional	99.83
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.83
TIGR00901	356	2A0125 AmpG-related permease.	99.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.83
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.83
PRK03633	381	putative MFS family transporter protein; Provision	99.83
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.82
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.82
PRK11010	491	ampG muropeptide transporter; Validated	99.81
PRK09874	408	drug efflux system protein MdtG; Provisional	99.8
PRK11902	402	ampG muropeptide transporter; Reviewed	99.79
PRK10489	417	enterobactin exporter EntS; Provisional	99.79
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.78
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.78
PRK15011	393	sugar efflux transporter B; Provisional	99.76
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.76
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.76
PRK10054	395	putative transporter; Provisional	99.74
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.74
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.74
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.71
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.71
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.7
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.69
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.69
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.69
KOG2615	451	consensus Permease of the major facilitator superf	99.68
PRK09528	420	lacY galactoside permease; Reviewed	99.63
PRK10642	490	proline/glycine betaine transporter; Provisional	99.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.62
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.59
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.59
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.5
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.49
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.47
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.47
PTZ00207	591	hypothetical protein; Provisional	99.45
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.45
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.45
PRK10429	473	melibiose:sodium symporter; Provisional	99.38
PF13347	428	MFS_2: MFS/sugar transport protein	99.37
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.34
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.32
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.31
PRK09669	444	putative symporter YagG; Provisional	99.31
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.24
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.2
PRK15011	393	sugar efflux transporter B; Provisional	99.19
PRK09528	420	lacY galactoside permease; Reviewed	99.19
PRK09848	448	glucuronide transporter; Provisional	99.18
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.18
PRK05122	399	major facilitator superfamily transporter; Provisi	99.13
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.12
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.1
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.09
PRK11462	460	putative transporter; Provisional	99.08
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.07
PRK09874	408	drug efflux system protein MdtG; Provisional	99.03
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.03
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.02
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.99
COG2211	467	MelB Na+/melibiose symporter and related transport	98.98
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.97
PRK12382	392	putative transporter; Provisional	98.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.92
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.91
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.88
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.88
PRK09952	438	shikimate transporter; Provisional	98.86
PRK03633	381	putative MFS family transporter protein; Provision	98.84
KOG2563	480	consensus Permease of the major facilitator superf	98.81
PRK03893	496	putative sialic acid transporter; Provisional	98.8
PRK03545	390	putative arabinose transporter; Provisional	98.8
PRK10489	417	enterobactin exporter EntS; Provisional	98.79
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.77
TIGR00898	505	2A0119 cation transport protein.	98.77
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.76
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.74
TIGR00893	399	2A0114 d-galactonate transporter.	98.74
COG0477	338	ProP Permeases of the major facilitator superfamil	98.73
KOG3626	735	consensus Organic anion transporter [Secondary met	98.72
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.72
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.7
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.7
TIGR00891	405	2A0112 putative sialic acid transporter.	98.7
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.69
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.66
PRK15075	434	citrate-proton symporter; Provisional	98.66
TIGR00900	365	2A0121 H+ Antiporter protein.	98.64
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.63
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.62
KOG0569	485	consensus Permease of the major facilitator superf	98.62
PRK10504	471	putative transporter; Provisional	98.62
PRK03699	394	putative transporter; Provisional	98.59
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.59
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.59
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.58
PRK09705	393	cynX putative cyanate transporter; Provisional	98.58
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.56
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.56
PRK12307	426	putative sialic acid transporter; Provisional	98.54
TIGR00895	398	2A0115 benzoate transport.	98.54
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.53
PLN00028	476	nitrate transmembrane transporter; Provisional	98.52
TIGR00901	356	2A0125 AmpG-related permease.	98.51
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.5
PRK11010	491	ampG muropeptide transporter; Validated	98.49
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.47
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.46
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.44
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.43
PRK09848	448	glucuronide transporter; Provisional	98.42
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.41
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.4
PRK11663	434	regulatory protein UhpC; Provisional	98.37
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.36
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.35
PRK10054	395	putative transporter; Provisional	98.34
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.33
PRK11902	402	ampG muropeptide transporter; Reviewed	98.32
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.32
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.31
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.31
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.28
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.27
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.27
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.26
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.24
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.23
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.22
PRK09669	444	putative symporter YagG; Provisional	98.22
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.22
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.18
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.17
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.13
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.13
PRK10091	382	MFS transport protein AraJ; Provisional	98.12
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.11
PRK10429	473	melibiose:sodium symporter; Provisional	98.1
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.1
PRK10133	438	L-fucose transporter; Provisional	98.09
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.08
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.05
PF13347	428	MFS_2: MFS/sugar transport protein	98.03
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.99
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.96
KOG0254	513	consensus Predicted transporter (major facilitator	97.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.8
COG2211	467	MelB Na+/melibiose symporter and related transport	97.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.79
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.73
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.72
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.64
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.63
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.62
PRK11043	401	putative transporter; Provisional	97.61
PRK11462	460	putative transporter; Provisional	97.56
PF12832	77	MFS_1_like: MFS_1 like family	97.54
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.52
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.5
KOG3762	618	consensus Predicted transporter [General function	97.49
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.43
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.42
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.39
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.3
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.25
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.22
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.21
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.08
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.07
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.97
KOG3810	433	consensus Micronutrient transporters (folate trans	96.82
KOG2532	466	consensus Permease of the major facilitator superf	96.46
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.35
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.33
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.31
PF12832	77	MFS_1_like: MFS_1 like family	96.22
KOG2533	495	consensus Permease of the major facilitator superf	96.11
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.07
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.78
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.68
KOG0637	498	consensus Sucrose transporter and related proteins	95.66
PTZ00207	591	hypothetical protein; Provisional	95.52
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	95.17
KOG2563	480	consensus Permease of the major facilitator superf	94.8
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.59
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.55
COG3202	509	ATP/ADP translocase [Energy production and convers	94.48
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	93.77
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.67
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	93.27
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.77
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.72
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	92.5
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	91.68
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.22
KOG2615	451	consensus Permease of the major facilitator superf	90.7
TIGR00805	633	oat sodium-independent organic anion transporter.	90.57
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.29
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	89.92
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	88.99
KOG3762	618	consensus Predicted transporter [General function	86.3
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	85.45
KOG1330	493	consensus Sugar transporter/spinster transmembrane	85.28
PRK03612	521	spermidine synthase; Provisional	85.22
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	81.9
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	80.6

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.4e-38  Score=287.67  Aligned_cols=311  Identities=28%  Similarity=0.472  Sum_probs=254.8

Q ss_pred             CCCchhHHHhhhhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q 047275            2 VTSMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL   81 (319)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~   81 (319)
                      +|+..+..+++.++.+..... ...++  +.-...-+.+++++++|+++|+++.++++||+|||..++++.++..+++++
T Consensus        30 iNap~~~i~~f~n~t~~~r~g-~~~s~--~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~  106 (485)
T KOG0569|consen   30 VNAPQELIKSFINETLIERYG-LPLSD--STLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALL  106 (485)
T ss_pred             cCchHHHHHHHHHHHHHHhcC-CCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            466778888888887755432 11111  001233456788899999999999999999999999999999999988877


Q ss_pred             hhh---chhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccC-CCcchH
Q 047275           82 GGA---AFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIK-GGWGWR  157 (319)
Q Consensus        82 ~~~---a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~gWr  157 (319)
                      ..+   ++++++++++|++.|+..|......+.|+.|.+|++.||..+...+++..+|.+++...+.  ..+. ..-.|+
T Consensus       107 ~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l--~~ilGt~~~W~  184 (485)
T KOG0569|consen  107 MGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL--PSLLGTEDLWP  184 (485)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc--HHhcCCCcchH
Confidence            655   4889999999999999999999999999999999999999999999999999888865543  1222 234699


Q ss_pred             HHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhc---cccccchhhhhcc
Q 047275          158 ISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVS---RTVKHPFQTIIQR  234 (319)
Q Consensus       158 ~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~  234 (319)
                      +.+.+..+|+++.++...++||||+|+..+++|++||++.+++.++.++.+++.++..++.+++   ++.+.+++++++.
T Consensus       185 ~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~  264 (485)
T KOG0569|consen  185 YLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKN  264 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcC
Confidence            9999999999998899999999999999977779999999999999877666554443332222   2245578888875


Q ss_pred             -cchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          235 -KYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                       ..|+.....+.+.+.+++++++.+.+|...++++.|++.+... ..+...+.+.+++++++.+++||.|||++++.+..
T Consensus       265 ~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~-~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~  343 (485)
T KOG0569|consen  265 PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ-YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS  343 (485)
T ss_pred             cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence             4566677788899999999999999999999999999887666 67888899999999999999999999999999998


Q ss_pred             Hhhhc
Q 047275          314 LMFVS  318 (319)
Q Consensus       314 ~~~~~  318 (319)
                      +|.++
T Consensus       344 ~~~~~  348 (485)
T KOG0569|consen  344 LMAVA  348 (485)
T ss_pred             HHHHH
Confidence            88764

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=3.3e-35  Score=279.06  Aligned_cols=278  Identities=36%  Similarity=0.617  Sum_probs=240.8

Q ss_pred             hhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHh
Q 047275           36 LLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSE  115 (319)
Q Consensus        36 ~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e  115 (319)
                      ..++++++..+|.++|+++.|+++|++|||++++.+.+++.++++++++++|+++++++|+++|+|.|+.....+.|++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHH
Q 047275          116 MAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAK  195 (319)
Q Consensus       116 ~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~  195 (319)
                      .+|++.||...+..++...+|.+.+.+.++...+. + ++||.++.+..+|+++..+..+++||||+|+..+++ .++++
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a~  246 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEAK  246 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHHH
Confidence            99999999999999999999999888887766544 2 789999999999998877778889999999998766 78899


Q ss_pred             HHHHHHcC--ChhHHHHHHHHHHHHhh---ccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcC
Q 047275          196 KMLQRVRG--TADVQAELDDLIRASIV---SRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIK  270 (319)
Q Consensus       196 ~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (319)
                      +.++++.+  +.+.+.+.++.......   ..+.+..+.+++++..+++.........+++.++++.+.+|.+.+++..+
T Consensus       247 ~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g  326 (513)
T KOG0254|consen  247 RSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG  326 (513)
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC
Confidence            99999988  34444444444311111   11222347788887788888889999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhhc
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVS  318 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~~  318 (319)
                      ...+.  ...+.+.+++.++++.++.++.||+|||++++.+...|.++
T Consensus       327 ~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~  372 (513)
T KOG0254|consen  327 LKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSIC  372 (513)
T ss_pred             CCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence            88664  45677888999999999999999999999999999888765

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.6e-32  Score=257.87  Aligned_cols=281  Identities=19%  Similarity=0.249  Sum_probs=199.8

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchh------hhHHHHHHHHHhhhhhhcc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFN------VYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~------~~~li~~R~l~Gig~g~~~  106 (319)
                      ++.+.+++.+...+|..+|+++.|+++||+|||+++.++.+++.+++++++++++      ++.++++|+++|++.|+..
T Consensus        54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence            4566778999999999999999999999999999999999999999999888765      7899999999999999999


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccc-c-------------------CCCcchHHHHHhhHHH
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQK-I-------------------KGGWGWRISLSMAAAP  166 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-~-------------------~~~~gWr~~f~~~~~~  166 (319)
                      +..+.+++|++|+++||+..+..+.+..+|.+.+..+...+.. .                   ...++||++|.+..+|
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip  213 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP  213 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence            9999999999999999999988888888887666555432210 0                   1136899999999999


Q ss_pred             HHHHHHhcccccCChhhHHhccCChHHHHHHHHHHcCChhH--HHHHHHHHHHHhhccccccchhhhhcccchh---HHH
Q 047275          167 ASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADV--QAELDDLIRASIVSRTVKHPFQTIIQRKYRP---QLV  241 (319)
Q Consensus       167 ~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~  241 (319)
                      +++..+.++++||||+|+..++++++++++.+++..+.+..  .++.++.++   +.++.+.++++++++.+.+   +..
T Consensus       214 ~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~  290 (502)
T TIGR00887       214 ALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDFFTHFFKWRHGKHL  290 (502)
T ss_pred             HHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhc---cccchhhhHHHHHHHHhhhHHHHHH
Confidence            88877778899999999998877655666666665432111  111111110   1111123577777543222   222


Q ss_pred             HHHHHHHHHhhhhhhHhHhhhHHHHHhcCCCchhh-----------HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 047275          242 MAILIPFFQQLTGINVISFYAPVLFRTIKLSESTS-----------LLMSAVVTGGVSTIATITSMILTDKLGRKVLFLV  310 (319)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  310 (319)
                      .......+.+...++....|.|.++++.+.+....           ......+..+..+++.++.++++||+|||+++++
T Consensus       291 ~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~  370 (502)
T TIGR00887       291 LGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLM  370 (502)
T ss_pred             HHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence            22222233333345566678899888877654311           1112233344567788999999999999998877


Q ss_pred             hhHHhh
Q 047275          311 GGILMF  316 (319)
Q Consensus       311 g~~~~~  316 (319)
                      +..++.
T Consensus       371 ~~~~~~  376 (502)
T TIGR00887       371 GFFILT  376 (502)
T ss_pred             HHHHHH
Confidence            665443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.98  E-value=1.1e-36  Score=285.04  Aligned_cols=280  Identities=33%  Similarity=0.637  Sum_probs=229.6

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhch---hhhHHHHHHHHHhhhhhhccchhhH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAF---NVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~---~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+.++..++.++|..+|++++|+++||+|||++++.+.++..+++++.++++   |++.++++|+++|++.|+..+...+
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567889999999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCCh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~  191 (319)
                      |+.|..|+++||+.....+.++.+|.+.+.++.+......+.+.||+.+.+..+++++..+...++||||+|+..+++ .
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~-~  204 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR-D  204 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc-c
Confidence            999999999999999999999999988887777655444445789999999999987777778899999999988877 5


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccc-hhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcC
Q 047275          192 EKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKY-RPQLVMAILIPFFQQLTGINVISFYAPVLFRTIK  270 (319)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (319)
                      +||++.+++.++.+..+++.++..++.+..++.+..++++++.+. ++++...+...++++.++++...+|.|.++++.+
T Consensus       205 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~  284 (451)
T PF00083_consen  205 EEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAG  284 (451)
T ss_pred             cccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence            589998888766544444443333322222222356777877643 5667777777777778888888899999988877


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhhc
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVS  318 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~~  318 (319)
                      .+.+   ...+.+.++..+++++.+.+++||+|||++++.+...+.++
T Consensus       285 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  285 ISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence            7665   24455666778888999999999999999988887766554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=1.5e-29  Score=238.57  Aligned_cols=280  Identities=24%  Similarity=0.431  Sum_probs=203.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc------------hhhhHHHHHHHHHh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA------------FNVYMLILGRVLLG   99 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a------------~~~~~li~~R~l~G   99 (319)
                      .++.+.++..+++++|.+++++++|+++||+|||++++.+.+++.++.++++++            ++++.++++|+++|
T Consensus        52 ~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G  131 (479)
T PRK10077         52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGG  131 (479)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHh
Confidence            346778899999999999999999999999999999999999999998877753            33567899999999


Q ss_pred             hhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcc-----ccCCCcchHHHHHhhHHHHHHHHHhc
Q 047275          100 VGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQ-----KIKGGWGWRISLSMAAAPASILTLGA  174 (319)
Q Consensus       100 ig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-----~~~~~~gWr~~f~~~~~~~~~~~~~~  174 (319)
                      ++.|+..+....+++|++|+++||++.+..+.+..+|.+.+.+.+....     ...+.++||+.|.+.+++.++..+..
T Consensus       132 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        132 IGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             hhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888888776665544321     12235799999998888777766667


Q ss_pred             ccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhh
Q 047275          175 LILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTG  254 (319)
Q Consensus       175 ~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  254 (319)
                      +++||+|+++..+++ .+++++..++..+..+.+...++.......+.+  + .+..+. ..............+++..+
T Consensus       212 ~~l~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  286 (479)
T PRK10077        212 YFVPETPRYLMSRGK-QEQAEGILRKIMGNTLATQALQEIKHSLDHGRK--T-GGKLLM-FGVGVIVIGVMLSVFQQFVG  286 (479)
T ss_pred             HcCCCCcHHHHHcCC-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhh--h-hhhhcc-hhHHHHHHHHHHHHHHHHhC
Confidence            789999999876655 566666667665544333222222111110000  0 011111 11112222333445556666


Q ss_pred             hhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          255 INVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      ++...+|.|.+.++.+.+..... ......++..+++.++.++++||+|||++++.+..++.+
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v  348 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  348 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence            77778899999888887654433 445567778889999999999999999998877766554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=6.1e-30  Score=248.61  Aligned_cols=234  Identities=16%  Similarity=0.185  Sum_probs=178.9

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +....+++.++.++|.++|++++|+++||+|||++++++++++.+++++++++++++.++++|+++|++.|+..+....+
T Consensus       200 s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~  279 (742)
T TIGR01299       200 PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSY  279 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccc----------cCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQK----------IKGGWGWRISLSMAAAPASILTLGALILPDTPN  182 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~----------~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~  182 (319)
                      ++|++|+++||...+....++.+|.+++..+++.+..          .....+||+++.+.++++++.++..+++||||+
T Consensus       280 isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPr  359 (742)
T TIGR01299       280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPR  359 (742)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            9999999999998888888888887666554432211          011257999999998888877777888999999


Q ss_pred             hHHhccCChHHHHHHHHHHcCChhH-----HHH--HHHHHHHHh-------hcccc-----------------ccchhhh
Q 047275          183 SIIQRSNGHEKAKKMLQRVRGTADV-----QAE--LDDLIRASI-------VSRTV-----------------KHPFQTI  231 (319)
Q Consensus       183 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~--~~~~~~~~~-------~~~~~-----------------~~~~~~l  231 (319)
                      |+..+++ .+++.+.++++.+.+..     ...  .+..+....       .+.+.                 ...++++
T Consensus       360 wL~~~gr-~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  438 (742)
T TIGR01299       360 FFLENGK-HDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRC  438 (742)
T ss_pred             HHHHCCC-HHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHH
Confidence            9988876 78888888888654311     111  001100000       00000                 0135668


Q ss_pred             hcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHh
Q 047275          232 IQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRT  268 (319)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (319)
                      |...+++++++.+.+. +....+++.+..|.|.++++
T Consensus       439 f~~~~~~~tl~l~~~w-f~~~~~yygl~~w~P~~~~~  474 (742)
T TIGR01299       439 FNPEVREITIKLMGVW-FTLSFGYYGLSVWFPDMIKH  474 (742)
T ss_pred             cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            8888888877766654 44556788889999987543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.96  E-value=3.3e-28  Score=230.10  Aligned_cols=248  Identities=17%  Similarity=0.238  Sum_probs=175.1

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhH--------HHHHHHHHhhhhhhccchhhHH
Q 047275           41 TSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYM--------LILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        41 ~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~--------li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      .+..+++..+|++++|+++||+|||+++..+++++.++++++++++|++.        ++++|+++|++.|+..+....+
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            46678899999999999999999999999999999999999999999875        8999999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcc-----ccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhc
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQ-----KIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQR  187 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-----~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~  187 (319)
                      ++|++|+++||++.+....+..+|.+.+..+...+.     .....+|||++|++.++++++..+.+..+||+|++...+
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~  222 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV  222 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence            999999999999888888777777665543332211     112358999999998776665555667899999875322


Q ss_pred             cCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH
Q 047275          188 SNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR  267 (319)
Q Consensus       188 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
                      ++ .++.       .. +       .      ..++.+.++++++++ +++.+....... +.....++.+..|.|.+++
T Consensus       223 ~~-~~~~-------~~-~-------~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~  278 (490)
T PRK10642        223 DK-LEQG-------DR-E-------G------LQDGPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLS  278 (490)
T ss_pred             Hh-hhhh-------cc-c-------c------ccccccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            11 0000       00 0       0      000123356666654 333333333222 2233445666678888875


Q ss_pred             h-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          268 T-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      + .+.+..... .......+..+++.++.|+++||+|||+.++.+.+
T Consensus       279 ~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  324 (490)
T PRK10642        279 HNLHYSEDHGV-LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSV  324 (490)
T ss_pred             HhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4 566544333 34445556677888999999999999998766654

>TIGR00898 2A0119 cation transport protein

Probab=99.96  E-value=3.5e-28  Score=230.75  Aligned_cols=267  Identities=20%  Similarity=0.296  Sum_probs=192.2

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      +...+...+.+++|.++|+++.|+++||+|||++++++.++..++.+++++++|++.++++|+++|++.|+..+....++
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  205 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLN  205 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHh
Confidence            56678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHH
Q 047275          114 SEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEK  193 (319)
Q Consensus       114 ~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~  193 (319)
                      .|++|+++|+...+....+..+|.+.+.++++...      +||+.+.+.+++.++..+..+++||+|+|+..+++ .++
T Consensus       206 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-~~~  278 (505)
T TIGR00898       206 TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEE  278 (505)
T ss_pred             heecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-HHH
Confidence            99999999999888888888889887777766542      39999998888877766666789999999988766 566


Q ss_pred             HHHHHHHHcCChhH--HHHHHHHH-HHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcC
Q 047275          194 AKKMLQRVRGTADV--QAELDDLI-RASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIK  270 (319)
Q Consensus       194 a~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (319)
                      +++.+++..+.+..  ..+..+.. +.+..+++.+.+++++++.+..+.........++.....++..    +......+
T Consensus       279 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  354 (505)
T TIGR00898       279 ALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGL----VLDLGNLG  354 (505)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----hccccccC
Confidence            66666655432111  11110100 0111111123467777765544433333322222222112222    22222222


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      .+    ......+.++..+++.++.+++.||+|||+.++++..++
T Consensus       355 ~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~  395 (505)
T TIGR00898       355 GN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLA  395 (505)
T ss_pred             CC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            22    234455677888999999999999999999876665544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.96  E-value=1e-26  Score=216.68  Aligned_cols=235  Identities=20%  Similarity=0.204  Sum_probs=163.3

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhh--------HHHHHHHHHhhhhhhccchhhHH
Q 047275           41 TSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVY--------MLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        41 ~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~--------~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      .+..+++..+|++++|+++||+|||+++..+.+.+.++++++++++++.        .+++.|+++|++.|+..+....+
T Consensus        69 ~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~  148 (432)
T PRK10406         69 FAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATY  148 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHH
Confidence            3455667779999999999999999999999999999999999998875        59999999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcccc-----CCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhc
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKI-----KGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQR  187 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~  187 (319)
                      ++|++|+++||++.+..+.+...|.+.+.++...+...     .+.+|||++|.+.++++++..+.+..+||+|++..  
T Consensus       149 i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--  226 (432)
T PRK10406        149 MSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--  226 (432)
T ss_pred             HHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--
Confidence            99999999999988887777777766555443322211     12479999999988887766556666788764310  


Q ss_pred             cCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH
Q 047275          188 SNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR  267 (319)
Q Consensus       188 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
                           +..   +                        .+.+++++++  +++ .+.......+.....++.+..|.|.+++
T Consensus       227 -----~~~---~------------------------~~~~~~~l~~--~~~-~~~~~~~~~~~~~~~~~~~~~~lp~~l~  271 (432)
T PRK10406        227 -----RAL---K------------------------EAGSLKGLWR--NRR-AFIMVLGFTAAGSLCFYTFTTYMQKYLV  271 (432)
T ss_pred             -----hhh---c------------------------ccccHHHHHh--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 000   0                        0113344442  122 2222222222223345556667777765


Q ss_pred             -hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          268 -TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                       +.+.+..+.. ....+......++..+.|+++||+|||+..+++..
T Consensus       272 ~~~g~s~~~~~-~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~  317 (432)
T PRK10406        272 NTAGMHANVAS-GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGS  317 (432)
T ss_pred             HhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence             4566544333 33334445556777888999999999987665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=220.79  Aligned_cols=267  Identities=19%  Similarity=0.205  Sum_probs=192.5

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +........+.+++|.++|++++|+++||+|||+++++++++..++++++++++|++.+++.|+++|++.++.......+
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~  195 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGL  195 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhh
Confidence            44556667788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChH
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHE  192 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~  192 (319)
                      ++|+.++++|+...+.....+..|.+.....+++.+      +||+.+++..++..+.++.+++.||||+|+..+++ .+
T Consensus       196 ~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~------~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~-~~  268 (521)
T KOG0255|consen  196 VAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR------DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR-ID  268 (521)
T ss_pred             heeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc-hH
Confidence            999999999999887766666777777777777654      69999999898887766666667799999999887 57


Q ss_pred             HHHHHHHHHcCC----hhHHHHHHHH---HHHHhhccccccchhhhhcccc-hhHHHHHHHHHHHHhhhhhhHhHhhhHH
Q 047275          193 KAKKMLQRVRGT----ADVQAELDDL---IRASIVSRTVKHPFQTIIQRKY-RPQLVMAILIPFFQQLTGINVISFYAPV  264 (319)
Q Consensus       193 ~a~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (319)
                      ++.+.+++....    .+.+...+..   ........+.+..+.++++..+ ++++....... +.....++..    +.
T Consensus       269 ~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~-~~~~~~y~gl----~~  343 (521)
T KOG0255|consen  269 EAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIW-FVFSLVYYGL----SL  343 (521)
T ss_pred             HHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHH-HHHhHHHHhh----hh
Confidence            788888877432    1121111111   1111111122345777777653 33333333222 1111111221    11


Q ss_pred             HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          265 LFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      ..+..+    .+.+....+.+....++....+...|+.|||...+.+..+.
T Consensus       344 ~~~~lg----~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~  390 (521)
T KOG0255|consen  344 NVSGLG----GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLA  390 (521)
T ss_pred             hhhhcC----chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            122222    23445556666789999999999999999998876665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.95  E-value=6.3e-26  Score=212.48  Aligned_cols=282  Identities=35%  Similarity=0.631  Sum_probs=199.7

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc---hhhhHHHHHHHHHhhhhhhccchh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA---FNVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a---~~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      ++.+.+++.+.++++..+++++.|+++||+|||++++.+.+++.++.+++.++   .+++.++++|+++|++.|...+..
T Consensus        69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  148 (481)
T TIGR00879        69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV  148 (481)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence            46778889999999999999999999999999999999999999999888554   445689999999999999999999


Q ss_pred             hHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccC
Q 047275          110 PLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSN  189 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~  189 (319)
                      ..++.|++|+++|++..+....+..+|.+++.++........+..+||+.|.+.++..++..+..+++||+|++...+++
T Consensus       149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  228 (481)
T TIGR00879       149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR  228 (481)
T ss_pred             HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC
Confidence            99999999999999999998888889888777765111112234689999998777766666667788999988765544


Q ss_pred             ChHHHHHHHHHHcCChhHHHHH----HHHHH-HHhhccccccchhhhhccc--chhHHHHHHHHHHHHhhhhhhHhHhhh
Q 047275          190 GHEKAKKMLQRVRGTADVQAEL----DDLIR-ASIVSRTVKHPFQTIIQRK--YRPQLVMAILIPFFQQLTGINVISFYA  262 (319)
Q Consensus       190 ~~~~a~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (319)
                       .+++++..++..+..+.+.+.    +.... .....+..+....++++..  ..++........++.+....+...++.
T Consensus       229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (481)
T TIGR00879       229 -VEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYS  307 (481)
T ss_pred             -hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHH
Confidence             344444444443222111111    00000 0001111122233444322  234444455555555555566778889


Q ss_pred             HHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          263 PVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      |+++++.+.+... ......+..+..+++.++.+++.||+|||++.+.+.+++.
T Consensus       308 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  360 (481)
T TIGR00879       308 PTIFENAGVSTDH-AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMA  360 (481)
T ss_pred             HHHHHHcCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999888877643 3355666677788999999999999999998776655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.95  E-value=3.7e-26  Score=213.15  Aligned_cols=239  Identities=19%  Similarity=0.263  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhh--------HHHHHHHHHhhhhhhccchhhHHHH
Q 047275           43 SPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVY--------MLILGRVLLGVGIGFSNQSVPLYLS  114 (319)
Q Consensus        43 ~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~--------~li~~R~l~Gig~g~~~~~~~~~i~  114 (319)
                      ..+++..+|+++.|+++||+|||+++..+.+.+.++++++++++++.        .++++|+++|++.|+.++....+++
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            45667789999999999999999999999999999999999999987        5899999999999999999999999


Q ss_pred             hcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcccc-----CCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccC
Q 047275          115 EMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKI-----KGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSN  189 (319)
Q Consensus       115 e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~  189 (319)
                      |++|+++||++.+..+.+..+|.+++..+...+...     ...+|||++|.+.+++.++....+...||+|++...+++
T Consensus       152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~  231 (438)
T PRK09952        152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE  231 (438)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh
Confidence            999999999998888888888876664432222111     124899999999888766655556678898876432211


Q ss_pred             ChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH-h
Q 047275          190 GHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR-T  268 (319)
Q Consensus       190 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  268 (319)
                      . ++.          +                  .+.+..+.+.+ +++.... .....+......+....|.|.+++ .
T Consensus       232 ~-~~~----------~------------------~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~  280 (438)
T PRK09952        232 Q-AAA----------K------------------KRIPVIEALLR-HPGAFLK-IIALRLCELLTMYIVTAFALNYSTQN  280 (438)
T ss_pred             c-ccc----------c------------------ccCCHHHHHHH-chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0 000          0                  00011111111 1222222 222222233334555566776664 4


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          269 IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      .+.+... ......+.+...+++.++.|+++||+|||+..+.+.+
T Consensus       281 ~g~s~~~-~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~  324 (438)
T PRK09952        281 LGLPREL-FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGAL  324 (438)
T ss_pred             cCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            5555432 2233445566778888999999999999988766543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=5.8e-26  Score=196.89  Aligned_cols=275  Identities=19%  Similarity=0.203  Sum_probs=205.6

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      ......++...+.|+++|+..+|..+|++|||+.+..+.+...+...+.+.++|+..+++.|.+.|+|.|+ .|...++=
T Consensus       112 ~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~y  190 (528)
T KOG0253|consen  112 EGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIY  190 (528)
T ss_pred             hhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHH
Confidence            34566889999999999999999999999999999999999999999999999999999999999999999 77777788


Q ss_pred             HhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHH
Q 047275          114 SEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEK  193 (319)
Q Consensus       114 ~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~  193 (319)
                      .|..|..+|+..+... ..+.+|.+....+.|....   ..||||.....+.|..+++...+|+|||||+...+++ ++|
T Consensus       191 le~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~---~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~-~~k  265 (528)
T KOG0253|consen  191 LEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS---NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD-DYK  265 (528)
T ss_pred             HHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC-hHH
Confidence            9999999999876666 8899999999888886532   3689998888888888888888999999999998887 677


Q ss_pred             HHHHHHHHcCChhH----------------HHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhH
Q 047275          194 AKKMLQRVRGTADV----------------QAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINV  257 (319)
Q Consensus       194 a~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (319)
                      |.+.++++...+..                +++.+..+..+...++......+++..+.++.++....+.+...+ .++.
T Consensus       266 AletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnaf-syyg  344 (528)
T KOG0253|consen  266 ALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAF-SYYG  344 (528)
T ss_pred             HHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHH-HHHH
Confidence            88888877432211                001111111122223445567788888877777765555443333 3344


Q ss_pred             hHhhhHHHHHhcC-------------------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          258 ISFYAPVLFRTIK-------------------LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       258 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      .......+++.-.                   -.+....+...++..+.+++|.++.++++||+|||+.+....+++
T Consensus       345 ~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f  421 (528)
T KOG0253|consen  345 SVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILF  421 (528)
T ss_pred             HHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHH
Confidence            3333334433211                   111223345677888899999999999999999999876555444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.94  E-value=2.5e-25  Score=206.04  Aligned_cols=267  Identities=15%  Similarity=0.175  Sum_probs=181.1

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+++.+.++++..+++++.|+++||+|||+++..+.+++.++++++++++|++.+++.|+++|++.|+..+....
T Consensus        40 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  119 (412)
T TIGR02332        40 LSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILL  119 (412)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccc---cCCCcchHHHHHhhHHHHHHH-HHhcccccCChhhHHhc
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQK---IKGGWGWRISLSMAAAPASIL-TLGALILPDTPNSIIQR  187 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~~~gWr~~f~~~~~~~~~~-~~~~~~l~es~~~~~~~  187 (319)
                      +++|++|+++|++..+..+.+..+|..++..++..+..   ..+.+|||+.|.+.+++.++. .+.++++||+|+..  +
T Consensus       120 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~  197 (412)
T TIGR02332       120 YLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--K  197 (412)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--C
Confidence            99999999999999999988888887766555432211   123479999999887776553 34566789988531  0


Q ss_pred             cCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH
Q 047275          188 SNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR  267 (319)
Q Consensus       188 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
                      ...+++.+...++........++.++..  +....+.+..+++++    .+.. +.....+++.....+.+..|.|.+++
T Consensus       198 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~p~~l~  270 (412)
T TIGR02332       198 WLDEEDKKALKEMIDNDQLTLEQPEGAF--AHAAMPQRSMLREIF----TPAI-MLYTLAYFCLTNTLSAINIWTPQILQ  270 (412)
T ss_pred             CCCHHHHHHHHHHHHhcccccccccccc--ccccccHHHHHHHhc----ChHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0001111111111110000000000000  000000011122222    2232 33444445555566777789999988


Q ss_pred             hcCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q 047275          268 TIKL-SESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVL  307 (319)
Q Consensus       268 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  307 (319)
                      +.+. .+.........+..+..+++.+..++++||++||+.
T Consensus       271 ~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       271 SFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             hcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            7432 222333345667777888999999999999998774

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=4.2e-27  Score=209.54  Aligned_cols=307  Identities=20%  Similarity=0.262  Sum_probs=201.1

Q ss_pred             CchhHHHhhhhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh
Q 047275            4 SMEPFLKKFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG   83 (319)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~   83 (319)
                      ++|.|....+.++.-...-+-. .+..+.++...+.+..+..+|..+|++++|+++|++|||++|...++..++++++++
T Consensus        54 sYDlF~I~lVt~il~~lY~~~~-~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~  132 (538)
T KOG0252|consen   54 SYDLFSISLVTKILGYLYYHGD-ESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSG  132 (538)
T ss_pred             chhhhhHHHHHHHHHHHhcCCC-CCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhc
Confidence            4566666555554333211111 011345678888999999999999999999999999999999999999999999888


Q ss_pred             hchh-------hhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH----hhccccCC
Q 047275           84 AAFN-------VYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN----YGTQKIKG  152 (319)
Q Consensus        84 ~a~~-------~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~  152 (319)
                      +...       ..+|++.|++.|+|+|+.+|...++.+|.+.++.||...+..-..+..|++.+.++.    ..+....+
T Consensus       133 ~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~  212 (538)
T KOG0252|consen  133 LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN  212 (538)
T ss_pred             cCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence            7632       368999999999999999999999999999999999865555444555544443333    22222211


Q ss_pred             C--------cchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhcccc
Q 047275          153 G--------WGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTV  224 (319)
Q Consensus       153 ~--------~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (319)
                      .        .=||..|.++.+|++++++.++.+|||+++.....++.+.|.+..+|....     +.++....+......
T Consensus       213 ~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~-----~~~~~~~~~~~~~~~  287 (538)
T KOG0252|consen  213 GPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV-----DIEAESTAESDVPPP  287 (538)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc-----ccchhhccccCCCCc
Confidence            1        249999999999999999999999999999876666555554333333221     000000001111111


Q ss_pred             ccc---hhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCCCchhhHH--------HHHHHHHHHHHHHHH
Q 047275          225 KHP---FQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLL--------MSAVVTGGVSTIATI  293 (319)
Q Consensus       225 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  293 (319)
                      +..   +..+|.+++.++++.+....+..- ...+....+...+++..+........        ...++.....++|+.
T Consensus       288 ~~~~~~F~~~f~~~hg~~Llgt~~~WFllD-iafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw  366 (538)
T KOG0252|consen  288 SNSFGLFSRLFLRWHGKHLLGTAGTWFLLD-IAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYW  366 (538)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHhhh-hhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCcee
Confidence            122   333443445555554444433322 23344455566667766654432221        223333344556888


Q ss_pred             HHHHHHHhcCCchHHHHhhHHhhh
Q 047275          294 TSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       294 ~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      ++..++|++|||+..+.|..++.+
T Consensus       367 ~tv~~id~iGRk~iq~~GF~~~~i  390 (538)
T KOG0252|consen  367 FTVYFIDIIGRKYIQLMGFFIMTI  390 (538)
T ss_pred             EEEEEeehhhhHHHHHhhHHHHHH
Confidence            999999999999999999888765

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2e-25  Score=199.76  Aligned_cols=252  Identities=19%  Similarity=0.232  Sum_probs=194.4

Q ss_pred             hhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHH
Q 047275           16 VYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGR   95 (319)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R   95 (319)
                      ..+++.+|++++      ....++..+.+-++..+++++...+.||+.||++++..+.+|.++++++++++||+.++++|
T Consensus        35 LLp~iA~dl~vs------~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR  108 (394)
T COG2814          35 LLPPIAADLGVS------EGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLAR  108 (394)
T ss_pred             chHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            556667777654      47788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hc
Q 047275           96 VLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GA  174 (319)
Q Consensus        96 ~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~  174 (319)
                      ++.|++.|...+....+.++.+||++|++..+....+..++.+.+..++-+++   +.+|||..|.+....+++..+ .+
T Consensus       109 ~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig---~~~GWR~~F~~ia~l~ll~~~~~~  185 (394)
T COG2814         109 ALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG---QLFGWRATFLAIAVLALLALLLLW  185 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888888888777765555443   348999999987777666444 46


Q ss_pred             ccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhh
Q 047275          175 LILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTG  254 (319)
Q Consensus       175 ~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  254 (319)
                      ..+|  |+....+.                                    +.+.++.++-.++++....+..+.+.....
T Consensus       186 ~~lP--~~~~~~~~------------------------------------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~  227 (394)
T COG2814         186 KLLP--PSEISGSL------------------------------------PGPLRTLLRLLRRPGVLLGLLATFLFMTGH  227 (394)
T ss_pred             HhCC--CccCCCCC------------------------------------CcchhHHHHHhcCchHHHHHHHHHHHHcch
Confidence            6678  22110000                                    011111122223455556666666666666


Q ss_pred             hhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          255 INVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      +..++|..|++.+..+++.+. .....+..|+..++|++++|++.|| +.|+.+.....++.
T Consensus       228 F~~ftYi~P~L~~v~g~s~~~-vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a  287 (394)
T COG2814         228 FALYTYIRPFLESVAGFSVSA-VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA  287 (394)
T ss_pred             hhhHHhHHHHHHHccCCCHhH-HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence            677788888888888877554 4466778899999999999999999 77776655544443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.93  E-value=6.2e-24  Score=195.33  Aligned_cols=269  Identities=18%  Similarity=0.214  Sum_probs=174.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+++.+...++..+++++.|+++||+|||++++.+.++..++.++++++++++.+++.|+++|++.++..+....
T Consensus        44 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  123 (405)
T TIGR00891        44 LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAA  123 (405)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCCh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~  191 (319)
                      ++.|++|+++|++..+....+..+|...+..+........ ..+||+.|.+..++.++..+....+||++++...+++ +
T Consensus       124 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  201 (405)
T TIGR00891       124 YVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW-GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG-K  201 (405)
T ss_pred             HHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh-h
Confidence            9999999999999988888888888766655543322111 1359999988777666555556678888765432211 1


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHH-HhcC
Q 047275          192 EKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLF-RTIK  270 (319)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  270 (319)
                      ++..+..++..+.+....+.         .++...+.+... +++.+..........+... .......+.|.++ ++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  270 (405)
T TIGR00891       202 ALVRTMVDILYGGEHRIANI---------VMTLAAAMVQSA-GKRWPTFVYLVVLVLFANL-YSHPIQDLLPTYLKADLG  270 (405)
T ss_pred             hhhhhHHHHHhccchhhhhh---------hhhhhHHhhhhh-hhhhHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHhC
Confidence            11111111111110000000         000000011100 0111111111111111111 1223334556555 4456


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHH
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGIL  314 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~  314 (319)
                      .+..+. .......++..+++.++.+++.||+|||+.+..+..+
T Consensus       271 ~s~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~  313 (405)
T TIGR00891       271 LSPHTV-ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA  313 (405)
T ss_pred             CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH
Confidence            554433 3445566777889999999999999999887655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.93  E-value=4.2e-24  Score=199.15  Aligned_cols=231  Identities=21%  Similarity=0.355  Sum_probs=153.2

Q ss_pred             HHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhh--------HHHHHHHHHhhhhhhccchhhHHHHhcCC
Q 047275           47 AGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVY--------MLILGRVLLGVGIGFSNQSVPLYLSEMAP  118 (319)
Q Consensus        47 g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~--------~li~~R~l~Gig~g~~~~~~~~~i~e~~p  118 (319)
                      +..+|+++.|+++||+|||+.++.+...+.+++.+++++++++        .++++|+++|++.|...+....+++|++|
T Consensus        68 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  147 (434)
T PRK15075         68 MRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT  147 (434)
T ss_pred             HhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence            3357899999999999999999999999999999999999987        46999999999999999999999999999


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhcc-----ccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHH
Q 047275          119 PKHRGAFNIGFQVCTAIGVLGANLLNYGTQ-----KIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEK  193 (319)
Q Consensus       119 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-----~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~  193 (319)
                      +++|++..+....+..+|...+..++....     ...+.+|||++|.+..+...+..+.....||++.+...++     
T Consensus       148 ~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----  222 (434)
T PRK15075        148 PGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-----  222 (434)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-----
Confidence            999999888777666555444333332211     1123579999998765543333332333444432110000     


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHh-cCCC
Q 047275          194 AKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRT-IKLS  272 (319)
Q Consensus       194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  272 (319)
                            +    .+                 .++.+++..  ++++....... ..+.+...++.+.+|.|.++++ .+.+
T Consensus       223 ------~----~~-----------------~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~~  272 (434)
T PRK15075        223 ------R----PS-----------------MREIFRSLA--ANWRIVLAGML-MVAMTTVSFYLITVYTPTFGKTVLHLS  272 (434)
T ss_pred             ------c----cc-----------------cccHHHHHH--HhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                  0    00                 000011110  11122222222 2222344466777888988876 5766


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          273 ESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      ..+. .+...+.++..+++.++.|+++||+|||+..+.+..
T Consensus       273 ~~~~-~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~  312 (434)
T PRK15075        273 AADS-LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTV  312 (434)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            5443 345566677788999999999999999998766543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.92  E-value=1.1e-23  Score=195.71  Aligned_cols=256  Identities=16%  Similarity=0.206  Sum_probs=175.1

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      ++.+.+...+...++..+++++.|+++||+|||+++..+.+...++..+++++++++.++++|+++|++.|...+....+
T Consensus        51 s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~  130 (426)
T PRK12307         51 TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTY  130 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChH
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHE  192 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~  192 (319)
                      +.|++|+++|++..+....+..+|.+++..+....   .+..+||+.|.+..++.++........||++++...+.++++
T Consensus       131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l---~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  207 (426)
T PRK12307        131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF---AEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKG  207 (426)
T ss_pred             HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH---cccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccc
Confidence            99999999999999888888888876665443222   234689999988665544443333345666543211100000


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCCC
Q 047275          193 KAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLS  272 (319)
Q Consensus       193 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (319)
                               ...++.             .+..+.+++++++++..+......... +......+.+..+.|.++++.+.+
T Consensus       208 ---------~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~  264 (426)
T PRK12307        208 ---------KHSQSA-------------WSVFSLSMKGLFNRAQFPLTLCVFIVL-FSIFGANWPIFGLLPTYLAGEGFD  264 (426)
T ss_pred             ---------cccccc-------------hhhhhHHHHHHHhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence                     000000             000112344455443333222222222 222222233455777777776665


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          273 ESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      .... .....+.++..+++.++.+++.||+|||+....+.+++
T Consensus       265 ~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~  306 (426)
T PRK12307        265 TGVV-SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMS  306 (426)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4333 34445666778899999999999999998876665433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=3.6e-23  Score=188.50  Aligned_cols=244  Identities=15%  Similarity=0.107  Sum_probs=164.3

Q ss_pred             hhhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHH
Q 047275           12 FFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYML   91 (319)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~l   91 (319)
                      .+++..+.+.+|.+.      ++.+.+++.+.++++..+++++.|+++||+|||+++..+......+......+++++.+
T Consensus         9 ~~~~~lp~i~~~~~~------s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         9 TFSPVLSLVAEDIDV------SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             HHHhhHHHHHHHhCc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            345566666666653      45788899999999999999999999999999998776666555544333334799999


Q ss_pred             HHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH-H
Q 047275           92 ILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI-L  170 (319)
Q Consensus        92 i~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~-~  170 (319)
                      +++|+++|+|.|. .......++|++|+++|++..+....+..+|.+.+.+++..+.   +++|||+.|.+.++++++ .
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~---~~~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY---TAGGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHHHHHHHHHHHHHHH
Confidence            9999999999996 4556667799999999999999999999999877766655443   247999999886665544 4


Q ss_pred             HHhcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHH
Q 047275          171 TLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQ  250 (319)
Q Consensus       171 ~~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  250 (319)
                      .+.++++||+|++..   +..+ .             ++..              ++++++++.   +.. +......++
T Consensus       159 ~~~~~~lp~~p~~~~---~~~~-~-------------~~~~--------------~~~~~ll~~---~~~-~~~~~~~~~  203 (368)
T TIGR00903       159 ILVLAALPALPFQAA---EGFG-F-------------KDAV--------------KEFGALAGR---KDL-WIIGAILGF  203 (368)
T ss_pred             HHHHHHcCCCCCCCC---CCcc-h-------------HHHH--------------HHHHHHHcC---hhH-HHHHHHHHH
Confidence            445667899986521   1000 0             0000              012334332   222 334344555


Q ss_pred             hhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047275          251 QLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRK  305 (319)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  305 (319)
                      .....+.+..|.|.++++.+.+..  ......+.   ...+.+..+++.||..||
T Consensus       204 ~~~~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~---~~~g~~g~~~~~d~~~r~  253 (368)
T TIGR00903       204 GVALFDNLAIWLEAALRPAGLEDI--AGDAVALA---ILAGLIGVAVIPDRVARA  253 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCChH--HHHHHHHH---HHHHHHHHHHhhHHhhhh
Confidence            556667778899999987765532  22222222   234445567888887654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.91  E-value=2.8e-23  Score=196.75  Aligned_cols=286  Identities=12%  Similarity=0.042  Sum_probs=183.9

Q ss_pred             hhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHH
Q 047275           16 VYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGR   95 (319)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R   95 (319)
                      ..+.+.+|.|      .+.++.+++.+.+.++..++.++.|+++||+|||++++.+..++.++++++++++|++.++++|
T Consensus        28 a~p~i~~~l~------~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r  101 (495)
T PRK14995         28 AAPTLSMTLG------ASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATR  101 (495)
T ss_pred             HHHHHHHHhC------CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444444544      3457788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhccchhhHHHHhcC-CCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHH-HHh
Q 047275           96 VLLGVGIGFSNQSVPLYLSEMA-PPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASIL-TLG  173 (319)
Q Consensus        96 ~l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~  173 (319)
                      +++|+|.++..+.....+.+.+ |+++|++..+.......+|...+..++..+.   ++.+||+.|++....+++. .+.
T Consensus       102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~---~~~gwr~~f~i~~~~~~~~~~l~  178 (495)
T PRK14995        102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL---EHFYWGSVFLINVPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCChHHHHHHHHHHHHHHHHHH
Confidence            9999999999888877776665 7789999988888888888777666554332   3468999998876554443 334


Q ss_pred             cccccCChhhHHhccCChHHHHH----------HHHHHc-CChhH-HHHH------HHHHHHHhhccccccchhh--hhc
Q 047275          174 ALILPDTPNSIIQRSNGHEKAKK----------MLQRVR-GTADV-QAEL------DDLIRASIVSRTVKHPFQT--IIQ  233 (319)
Q Consensus       174 ~~~l~es~~~~~~~~~~~~~a~~----------~~~~~~-~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~--l~~  233 (319)
                      .+++||++... .++.|..+...          .+++.. +..+. ....      .........+.+.++|..+  +|+
T Consensus       179 ~~~l~~~~~~~-~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~  257 (495)
T PRK14995        179 ARYVPRQAGRR-DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFT  257 (495)
T ss_pred             HHhCCCCCCCC-CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhC
Confidence            55678765321 11111111100          000000 00000 0000      0000000111122334332  333


Q ss_pred             ccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          234 RKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      .   |.........++ .....+...++.|.+++.....+.........+.++...++.++.|++.||+|||+....+..
T Consensus       258 ~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~  333 (495)
T PRK14995        258 H---RIILSGVVMAMT-AMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMA  333 (495)
T ss_pred             C---cccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            2   222222222222 223344556778888776544444445566667778888999999999999999988776665


Q ss_pred             Hh
Q 047275          314 LM  315 (319)
Q Consensus       314 ~~  315 (319)
                      ++
T Consensus       334 ~~  335 (495)
T PRK14995        334 LS  335 (495)
T ss_pred             HH
Confidence            44

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.91  E-value=1e-22  Score=188.00  Aligned_cols=246  Identities=17%  Similarity=0.209  Sum_probs=175.3

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++++.+.+.+...++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+....
T Consensus        47 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  126 (406)
T PRK11551         47 LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIA  126 (406)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCChhhHHhccCC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDTPNSIIQRSNG  190 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~~~~~~~~~~  190 (319)
                      ++.|++|+++|++..+....+..+|...+..+....   .+..+||+.|.+.++..++ ..+...++||+|++...+++ 
T Consensus       127 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-  202 (406)
T PRK11551        127 LTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA---AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA-  202 (406)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-
Confidence            999999999999998888888888877666655332   2346899999876654443 33445568998765322111 


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcC
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIK  270 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (319)
                      +++.              ++.                .+.+++....++... ....++......+....|.|.++++.+
T Consensus       203 ~~~~--------------~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g  251 (406)
T PRK11551        203 GKQR--------------APV----------------LRALFGEGRATATLL-LWISYFFTLIVLYFLLNWLPSLLVGQG  251 (406)
T ss_pred             chhh--------------hhh----------------HHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            0000              000                000111111111111 112222223334555667888888777


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      .+..... ......++..+++.++.+++.||+|||+.+..+.+
T Consensus       252 ~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (406)
T PRK11551        252 LSRSQAG-LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYA  293 (406)
T ss_pred             CChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            6654433 44556667788999999999999999987665443

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=1.6e-22  Score=185.29  Aligned_cols=269  Identities=22%  Similarity=0.284  Sum_probs=181.1

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+.+.+...++..+++++.|+++||+|||+.+..+..+..++.++..++++++.+++.|++.|++.+...+....
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  128 (398)
T TIGR00895        49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA  128 (398)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHH
Confidence            34577788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHH-HHHHHHHhcccccCChhhHHhccCC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAA-PASILTLGALILPDTPNSIIQRSNG  190 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~-~~~~~~~~~~~l~es~~~~~~~~~~  190 (319)
                      ++.|++|+++|++..+....+..+|...+..+....   .+.++||..+.+.+. ..+...+...++||++++...+ + 
T Consensus       129 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  203 (398)
T TIGR00895       129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL---IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-R-  203 (398)
T ss_pred             HHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH---hhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-C-
Confidence            999999999999988888888888876665544222   224689998887753 3333444566789988765433 2 


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcC
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIK  270 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (319)
                      +++.++..++.......+.+ ++..+.....++.++..+.+++.+..++..... ...+......+....+.|++.++.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g  281 (398)
T TIGR00895       204 PETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKTARITVLLW-LLYFMLLVGVYFLTNWLPKLMVELG  281 (398)
T ss_pred             HHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            23333322222111000000 000000000000111223333333333333322 2233334445666778887777777


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLF  308 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  308 (319)
                      .+..... .......+..+++.++.+++.||+|||+..
T Consensus       282 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  318 (398)
T TIGR00895       282 FSLSLAA-TGGALFNFGGVIGSIIFGWLADRLGPRVTA  318 (398)
T ss_pred             CCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            7654433 445566777889999999999999999543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.90  E-value=6.6e-23  Score=192.91  Aligned_cols=271  Identities=11%  Similarity=0.033  Sum_probs=171.4

Q ss_pred             hhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh-----hchhh
Q 047275           14 PEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG-----AAFNV   88 (319)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~-----~a~~~   88 (319)
                      +...+.+.+|.+      .++.+.+++.+.++++..++.++.|+++||+|||+++..+.+...++.++.+     .++++
T Consensus        49 ~~~~~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~  122 (467)
T PRK09556         49 KAAQNDMISTYG------LSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSL  122 (467)
T ss_pred             hhhhHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchH
Confidence            333444455544      4568889999999999999999999999999999998887777666655544     46899


Q ss_pred             hHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHh-hccccCCCcchHHHHHhhHHHH
Q 047275           89 YMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNY-GTQKIKGGWGWRISLSMAAAPA  167 (319)
Q Consensus        89 ~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~gWr~~f~~~~~~~  167 (319)
                      +.+++.|+++|++.|...+....+++|++|+++||+..+....+..+|..++..+.. ...... ..+||..|.+.++..
T Consensus       123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~-~~~~~~~f~~~g~~~  201 (467)
T PRK09556        123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF-DGHVIGMFIFPSIIA  201 (467)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc-cCcchhHHHHHHHHH
Confidence            999999999999999999999999999999999999888888777777665544432 222111 125898888766665


Q ss_pred             HHHHH-hcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcc--cchhHHHHHH
Q 047275          168 SILTL-GALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQR--KYRPQLVMAI  244 (319)
Q Consensus       168 ~~~~~-~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~  244 (319)
                      ++..+ .+++.+|+|.....  .++++   ..+   +....+++         ..++.+.+..+.+.+  .+++..+. .
T Consensus       202 ~~~~i~~~~~~~~~p~~~~~--~~~~~---~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~-~  263 (467)
T PRK09556        202 LIIGFIGLRYGSDSPEELGW--GKAEE---IFG---EPISEEDK---------ETESTDMTKWQIFVEYVLKNPVIWL-L  263 (467)
T ss_pred             HHHHHHHHHhCCCChhhcCC--CChhh---ccc---Cccchhhh---------ccccccCcHHHHHHHHHHcChHHHH-H
Confidence            54433 34455666643110  00111   000   00000000         000001111121111  11233333 3


Q ss_pred             HHHHHHhhhhhhHhHhhhHHHHH-hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 047275          245 LIPFFQQLTGINVISFYAPVLFR-TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLV  310 (319)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~  310 (319)
                      ....+......+...+|.|.+++ +.+.+..+.. .......+...++.++.|+++||+|||+..+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~  329 (467)
T PRK09556        264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAI-NTFTLFEIGALVGSLLWGWLSDLANGRRALVA  329 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            33333333344556788887775 4566654443 44455566788999999999999999876544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.90  E-value=5.9e-23  Score=193.81  Aligned_cols=275  Identities=17%  Similarity=0.170  Sum_probs=178.9

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      ++++.+++.+.+.++..++.++.|+++||+|||+.++.+.+++.++..+++.++|++.++++|+++|++.|...+....+
T Consensus        35 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~  114 (485)
T TIGR00711        35 SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFST  114 (485)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH-HhcccccCChhhHHhccCCh
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es~~~~~~~~~~~  191 (319)
                      +.|++|+++|++..+....+..+|...+..++...   .++++||+.|.+....+++.. +..+++||+++.. .++.|.
T Consensus       115 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~  190 (485)
T TIGR00711       115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI---IENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA-SENFDF  190 (485)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHh---ccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc-cCCCcH
Confidence            99999999999998888888888876665544322   235789999988766655433 3344566654311 111111


Q ss_pred             HHHHH----------HHHHHcCChh-HHHHHHHH--------HHHHhhccccccchh--hhhcccchhHHHHHHHHHHHH
Q 047275          192 EKAKK----------MLQRVRGTAD-VQAELDDL--------IRASIVSRTVKHPFQ--TIIQRKYRPQLVMAILIPFFQ  250 (319)
Q Consensus       192 ~~a~~----------~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~  250 (319)
                      .....          ...+...... ...+....        ......+.+.+++..  ++++.+   +........++ 
T Consensus       191 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-  266 (485)
T TIGR00711       191 LGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYR---NFTIGCVYMSL-  266 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCC---ChHHHHHHHHH-
Confidence            11000          0000000000 00000000        000000111222322  233222   22222222222 


Q ss_pred             hhhhhhHhHhhhHHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          251 QLTGINVISFYAPVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      .....+...++.|.++++ .+.+..+ ......+.++..+++.++.+++.||+|||++...+..++.
T Consensus       267 ~~~~~~~~~~~~p~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~  332 (485)
T TIGR00711       267 LGLGLYGSFYLLPLYLQQVLGYTALQ-AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYA  332 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            223345556678888765 4555433 4455666777888999999999999999998777665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.90  E-value=3.2e-22  Score=182.86  Aligned_cols=235  Identities=23%  Similarity=0.340  Sum_probs=160.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhh--------HHHHHHHHHhhhhhhccchhhHHHHh
Q 047275           44 PFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVY--------MLILGRVLLGVGIGFSNQSVPLYLSE  115 (319)
Q Consensus        44 ~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~--------~li~~R~l~Gig~g~~~~~~~~~i~e  115 (319)
                      .+++..+++++.|+++||+|||++++.+.++..++.+++++++++.        .+++.|+++|++.+...+....+++|
T Consensus        44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~  123 (394)
T TIGR00883        44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE  123 (394)
T ss_pred             HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence            3445567999999999999999999999999999999999998875        58999999999999999999999999


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccc-----cCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCC
Q 047275          116 MAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQK-----IKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNG  190 (319)
Q Consensus       116 ~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-----~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~  190 (319)
                      +.|+++|++..+....+..+|.+.+..+......     ..+.++||++|.+..+..++..+.....||++++...+++ 
T Consensus       124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (394)
T TIGR00883       124 YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-  202 (394)
T ss_pred             cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-
Confidence            9999999999888888888887766554432211     1134799999988776655544444556776543211000 


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH-hc
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR-TI  269 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  269 (319)
                                                    .++.+.+.++.++++ +++........ +......+....+.|.+++ +.
T Consensus       203 ------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  250 (394)
T TIGR00883       203 ------------------------------HKKKRGPIRETLTKH-RKPFLLGLGLV-IATTTTFYLITTYLPTYLTQTL  250 (394)
T ss_pred             ------------------------------cccccCCHHHHHHhc-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence                                          000112233333222 12233333332 2333334555667777774 45


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhh
Q 047275          270 KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGG  312 (319)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~  312 (319)
                      +.+... ......+..+...++.++.+++.||+|||+..+.+.
T Consensus       251 g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~  292 (394)
T TIGR00883       251 GLSANS-ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFT  292 (394)
T ss_pred             CCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            555443 334455666778889999999999999998765433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.90  E-value=3.4e-22  Score=183.77  Aligned_cols=242  Identities=17%  Similarity=0.193  Sum_probs=167.1

Q ss_pred             hcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHH
Q 047275           17 YKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRV   96 (319)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~   96 (319)
                      .+.+.+|.+      .++.+.++..+.+.++..+++++.|++.||+|||+++..+..++.++.+++++++|++.++++|+
T Consensus        32 ~~~l~~~~~------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  105 (390)
T PRK03545         32 LSDIAQSFH------MQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRI  105 (390)
T ss_pred             hHHHHhHcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            344444554      45688889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcc
Q 047275           97 LLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GAL  175 (319)
Q Consensus        97 l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~  175 (319)
                      ++|++.+...+....++.|++|+++|++..+....+..+|...+..+.....   +..|||+.|.+.++..++..+ ...
T Consensus       106 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~---~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        106 GIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG---QYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH---HHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888888888766655443321   236899999887776555433 334


Q ss_pred             cccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhh
Q 047275          176 ILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGI  255 (319)
Q Consensus       176 ~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  255 (319)
                      .+||+|+.     + +++.    +          +                 .++.+++   ++........++......
T Consensus       183 ~~~~~~~~-----~-~~~~----~----------~-----------------~~~~~~~---~~~~~~~~~~~~~~~~~~  222 (390)
T PRK03545        183 LLPLLPSE-----H-SGSL----K----------S-----------------LPLLFRR---PALVSLYLLTVVVVTAHF  222 (390)
T ss_pred             hCCCCCCC-----C-cchH----H----------H-----------------HHHHHhC---cHHHHHHHHHHHHHHHHH
Confidence            45665321     0 0000    0          0                 0111111   111112222222222222


Q ss_pred             hHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Q 047275          256 NVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLF  308 (319)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  308 (319)
                      ....+..|++.++.+.+..... ......++..+++.+..+++.||+|||.+.
T Consensus       223 ~~~~~~~~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  274 (390)
T PRK03545        223 TAYSYIEPFVQQVAGLSENFAT-LLLLLFGGAGIIGSVLFSRLGNRHPSGFLL  274 (390)
T ss_pred             HHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            2233334444444566554433 444556677899999999999999988653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.90  E-value=3.3e-22  Score=184.11  Aligned_cols=250  Identities=14%  Similarity=0.130  Sum_probs=172.9

Q ss_pred             hhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHH
Q 047275           14 PEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLIL   93 (319)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~   93 (319)
                      ++..+.+.+|.+.      +..+.++..+.+.++..+++++.|++.||+|||+++..+..++.++.+++++++|++.+++
T Consensus        29 ~~~lp~i~~~~~~------s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~  102 (393)
T PRK09705         29 GPLLPQLRQASGM------SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS  102 (393)
T ss_pred             chhHHHHHHHhCC------CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence            5566677666653      4578899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH-hhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275           94 GRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN-YGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus        94 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      +|+++|++.|...+....++.|++| ++|++..+....+...|...+..+. +..+.   ..+||..+.+.+++.++..+
T Consensus       103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~---~~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH---SETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987 7899988888777766655544433 22221   13799887665555443333


Q ss_pred             hcccc-cCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHh
Q 047275          173 GALIL-PDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQ  251 (319)
Q Consensus       173 ~~~~l-~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  251 (319)
                      .++.. ++.|+        +++.                            +...+ ++.+   ++++.+... ..++..
T Consensus       179 ~~~~~~~~~~~--------~~~~----------------------------~~~~~-~~~l---~~~~~~~l~-~~~~~~  217 (393)
T PRK09705        179 AWWWQSAREVA--------SSHK----------------------------TTTTP-VRVV---FTPRAWTLG-VYFGLI  217 (393)
T ss_pred             HHHHHhcCCCc--------cccC----------------------------CCcCC-cccc---cCHhHHHHH-HHHHHH
Confidence            22222 11111        0000                            00000 1111   112222222 222223


Q ss_pred             hhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          252 LTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      ...+.....|.|.++++.+.+.... .....+.++..+++.+..+++.||+|||+..+.+..++
T Consensus       218 ~~~~~~~~~~lp~~l~~~g~s~~~a-g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        218 NGGYASLIAWLPAFYIEIGASAQYS-GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhhh-hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            3445566677787777766665433 34555677888999999999999999998876665443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=3.1e-22  Score=181.87  Aligned_cols=244  Identities=14%  Similarity=0.108  Sum_probs=163.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+..+.++..+...++..+++++.|+++||+|||+++..+.++..++.+++++++|++.++++|+++|++.|...+....
T Consensus        35 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  114 (377)
T TIGR00890        35 VGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALN  114 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHH-HHHHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChhhHHhccC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLG-ANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPNSIIQRSN  189 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~~~~~~~~  189 (319)
                      ++.|++| ++|++..+....+..+|.+. +.+.....    +.++||+.|.+.++..++..+. .++++|.|+.. .+++
T Consensus       115 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  188 (377)
T TIGR00890       115 TAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI----NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTN  188 (377)
T ss_pred             HHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccC
Confidence            8899987 57999888888888887553 34444332    2368999998877766554433 34455443210 0000


Q ss_pred             ChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhc
Q 047275          190 GHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTI  269 (319)
Q Consensus       190 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (319)
                        ++.          .+.                 +...++.+++   ++........+..... ......+.+.+.++.
T Consensus       189 --~~~----------~~~-----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  235 (377)
T TIGR00890       189 --IEV----------SVK-----------------DYTVWEMLRT---PQFWVLYLSFFLNAVS-GLLLIGLYKPYGQSL  235 (377)
T ss_pred             --ccc----------chh-----------------hhhHHHHHcC---ccHHHHHHHHHHHhHH-HHHHHHHHHHHHHHc
Confidence              000          000                 0001112211   1111112111211122 222223344455666


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          270 KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      +.+... ......+.++...++.+..+++.||+|||+.+..+..++
T Consensus       236 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  280 (377)
T TIGR00890       236 GLSDGF-LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGIS  280 (377)
T ss_pred             CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            655433 334455667778899999999999999998876655444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.90  E-value=2.2e-22  Score=183.71  Aligned_cols=255  Identities=16%  Similarity=0.097  Sum_probs=172.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+++.+...++..+++++.|+++||+|||+++..+.++..++..+.+++++++.++++|+++|++.+...+....
T Consensus        26 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  105 (399)
T TIGR00893        26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIIL  105 (399)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccCChhhHHhccCC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPDTPNSIIQRSNG  190 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es~~~~~~~~~~  190 (319)
                      ++.|++|+++|++..+.......+|.+.+..+.....   +..+||+.|.+.++..++..+ .....||+|+..  +..+
T Consensus       106 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  180 (399)
T TIGR00893       106 IVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL---IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLT  180 (399)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH---HhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCC
Confidence            9999999999999988888888888776655543321   235799999887766555433 344566665321  1111


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHh-c
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRT-I  269 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  269 (319)
                      +++.....++...+         . +.....++.....++.++   +++... .....+......+....+.|.++++ .
T Consensus       181 ~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (399)
T TIGR00893       181 EEEKYIVVGGLLAE---------Q-QGKGPSTPKKYQIKELLK---DRRVWG-LALGQFLVNIGLGFFLTWFPTYLVQER  246 (399)
T ss_pred             HHHHhhcchhhccc---------c-ccccccCCCccchHHHhc---CHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            11110000000000         0 000001111222333332   233333 3333333344455666677777654 4


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 047275          270 KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKV  306 (319)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~  306 (319)
                      +.+.. ..........+..+++.++.+++.||+|||+
T Consensus       247 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       247 GLSIL-EAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             cccHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            54433 3334455667778899999999999999996

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=8e-22  Score=180.84  Aligned_cols=249  Identities=15%  Similarity=0.180  Sum_probs=169.5

Q ss_pred             hhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHH
Q 047275           16 VYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGR   95 (319)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R   95 (319)
                      ..+.+.+|.+      .+..+.++..+...++..+++++.|++.||+|||+++..+..+..++.+++++++|++.+++.|
T Consensus        25 ~l~~~~~~~g------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r   98 (382)
T PRK10091         25 VLTELAHDVG------ISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGR   98 (382)
T ss_pred             ChHHHHHHcC------CCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            3444444544      3457788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH-Hhc
Q 047275           96 VLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGA  174 (319)
Q Consensus        96 ~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~  174 (319)
                      +++|++.|...+....++.|+.|+++|++..+....+..+|...+..++..+   .+.++||+.|.+.++...+.. ...
T Consensus        99 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l---~~~~gwr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091         99 LVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL---SQEFSWRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH---hhhccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888889999999999999888777777777766554443322   224689999988776554433 334


Q ss_pred             ccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhh
Q 047275          175 LILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTG  254 (319)
Q Consensus       175 ~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  254 (319)
                      .++||.++.    .+ .+ .             ++.                 + +.++   +++.+.......+.. .+
T Consensus       176 ~~lp~~~~~----~~-~~-~-------------~~~-----------------~-~~~~---~~~~~~~~~~~~~~~-~~  214 (382)
T PRK10091        176 FWVPDIRDE----AK-GG-L-------------REQ-----------------F-HFLR---SPAPWLIFAATMFGN-AG  214 (382)
T ss_pred             HhCCCCCcc----cc-cC-H-------------HHH-----------------H-HHhc---ChHHHHHHHHHHHHH-HH
Confidence            557775321    00 00 0             000                 0 0010   111111111111111 12


Q ss_pred             hhH-hHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          255 INV-ISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       255 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      .+. ..+..|++.+..+.+... ......+.++..+++.++.+++.||+|+|++...+..++
T Consensus       215 ~~~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~  275 (382)
T PRK10091        215 VFAWFSYIKPYMMFISGFSETS-MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFII  275 (382)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHH
Confidence            222 233345554556665544 334555667788899999999999999998876655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=3.7e-22  Score=179.98  Aligned_cols=251  Identities=23%  Similarity=0.366  Sum_probs=169.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+++.+...++..+++++.|+++||+|||++++.+.++..++.++..+++|++.++++|+++|++.+...+....
T Consensus        29 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  108 (352)
T PF07690_consen   29 LSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNA  108 (352)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccc
Confidence            35678889999999999999999999999999999999999999999776667788889999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccCChhhHHhccCC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPDTPNSIIQRSNG  190 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es~~~~~~~~~~  190 (319)
                      ++.|++|+++|++..+....+..+|.+.+..++....   +.++||+.|.+.++..++..+ ...+++++++....+.++
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~  185 (352)
T PF07690_consen  109 LIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI---SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPK  185 (352)
T ss_dssp             HHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SST
T ss_pred             cccccchhhhhhhccccccchhhhhhhcccchhhhhh---hccccccccccccchhhhhhhhHhhhhhhccccccccccc
Confidence            9999999999999999999999999877766654432   346899999888877666544 234555554432211111


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhcccccc-chhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHH-HHh
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKH-PFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVL-FRT  268 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  268 (319)
                      +++              ++           .++... .++.+++++.    .+......+...........+.|.+ .+.
T Consensus       186 ~~~--------------~~-----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  236 (352)
T PF07690_consen  186 ESE--------------SK-----------KPKPLKPGFKSLFKNPV----LWILLIAFFLFFFVFSGFSFFLPLYLQEV  236 (352)
T ss_dssp             TTT---------------------------HHHCCCH-CTHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             ccc--------------cc-----------cccccccccccccccch----hhhhhhhhhHHHHHHHHhhcccchhhhhc
Confidence            110              00           000000 1222221111    1122222333333345566778877 455


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHH
Q 047275          269 IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGIL  314 (319)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~  314 (319)
                      .+.+..........+.+....++.++.+++.||+|+|+........
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (352)
T PF07690_consen  237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILL  282 (352)
T ss_dssp             HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            6666122333445566677778899999999999987665444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.89  E-value=1e-21  Score=183.06  Aligned_cols=248  Identities=14%  Similarity=0.111  Sum_probs=167.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      +++.+.+.+.+.+.++..+++++.|++.||+|||+++..+.++..++.++.+++++++.+++.|++.|++.|...+....
T Consensus        55 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~  134 (434)
T PRK11663         55 LSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAK  134 (434)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHH-HHhcccccCChhhHHhccCC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASIL-TLGALILPDTPNSIIQRSNG  190 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~l~es~~~~~~~~~~  190 (319)
                      ++.|++|+++|++..+..+.+..+|...+..+...+   .+.++||+.|.+.++..++. .+..++++|+|.+......+
T Consensus       135 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l---~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~  211 (434)
T PRK11663        135 LLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI---ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVG  211 (434)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcc
Confidence            999999999999998888888888876655433222   12478999998877665443 33445678877542111000


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcc--cchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH-
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQR--KYRPQLVMAILIPFFQQLTGINVISFYAPVLFR-  267 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  267 (319)
                      ++ .++. +      +..+          +.+..+.+.++.++.  .+.++.+ .....++......+.+..|.|.+++ 
T Consensus       212 ~~-~~~~-~------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~l~~  272 (434)
T PRK11663        212 EW-RHDA-L------ELAQ----------QQEGAGLSRKEILTKYVLLNPYIW-LLSFSYVLVYVVRAAINDWGNLYMSE  272 (434)
T ss_pred             cc-cccc-c------ccch----------hccccCCChhhhHHHHHhcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            00 0000 0      0000          000001112222211  1112222 2333333333334556667787774 


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047275          268 TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKL  302 (319)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  302 (319)
                      +.+.+..... ....+..+...++.++.|++.||+
T Consensus       273 ~~g~s~~~a~-~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        273 TLGVDLVTAN-SAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             ccCCCHHHHH-HHHHHHHHHHHHHHHHHhhhHHHh
Confidence            4566554433 445566677889999999999999

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.89  E-value=2e-21  Score=177.48  Aligned_cols=257  Identities=15%  Similarity=0.146  Sum_probs=175.1

Q ss_pred             hhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHH
Q 047275           14 PEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLIL   93 (319)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~   93 (319)
                      .|..+.+.+|.+      .++.+.+...+...++..++.++.|+++||+|||+++..+.++..++..++.++++++.+++
T Consensus        11 ~p~~~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102         11 LPALPVIAADFG------VSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             hccHHHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            344455444544      34678888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH-H
Q 047275           94 GRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT-L  172 (319)
Q Consensus        94 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~  172 (319)
                      .|+++|++.+...+....++.|++|+++|++..+.......+|...+..++....   +.++||+.|.+.+...++.. +
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~  161 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL---VWFSWHAIFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888888877887666655443222   23689999987666655433 3


Q ss_pred             hcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhh
Q 047275          173 GALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQL  252 (319)
Q Consensus       173 ~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  252 (319)
                      ..+++||+++..   ++++.             +.+.+              .++++++++.   ++....... .....
T Consensus       162 ~~~~~~~~~~~~---~~~~~-------------~~~~~--------------~~~~~~~~~~---~~~~~~~~~-~~~~~  207 (377)
T PRK11102        162 VFFFIPETLPKE---RRQPF-------------HLRTT--------------IRNFASLFRH---KRVLGYMLA-SGFSF  207 (377)
T ss_pred             HHHhCCccCccc---ccCCC-------------ChHHH--------------HHHHHHHHcC---hHHHHHHHH-HHHHH
Confidence            345667764310   00000             00000              0011222221   222222222 22222


Q ss_pred             hhhhHhHhhhHHHH-HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHH
Q 047275          253 TGINVISFYAPVLF-RTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGIL  314 (319)
Q Consensus       253 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~  314 (319)
                      .+.+....+.|.++ +..+.+..+ ........++..+++.+..+++.||+|||+....+..+
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  269 (377)
T PRK11102        208 AGMFSFLTAGPFVYIELNGVSPQN-FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWI  269 (377)
T ss_pred             HHHHHHHHcCHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            33344444555544 455666443 33455566777889999999999999999877665543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.89  E-value=2.2e-21  Score=177.46  Aligned_cols=244  Identities=15%  Similarity=0.123  Sum_probs=168.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.++..+...++..+++++.|++.||+|||+++..+.++..++.++.+.+++++.+++.|+++|++.+...+....
T Consensus        37 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  116 (385)
T TIGR00710        37 TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQA  116 (385)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH-HhcccccCChhhHHhccCC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGALILPDTPNSIIQRSNG  190 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es~~~~~~~~~~  190 (319)
                      ++.|++|+++|++..+..+....+|...+..+.....   +.++||+.+.+.++..++.. +..+..||+++..    + 
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  188 (385)
T TIGR00710       117 LVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL---VWLSWHAIFAFLSLAGILLSALIFFILPETLPYE----A-  188 (385)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----c-
Confidence            9999999999999888888888877665554433221   23689999887666554433 3344567764321    0 


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH-hc
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR-TI  269 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  269 (319)
                      +++.             ++..              +.+++.++.   ++..... ..........+....+.|.+++ +.
T Consensus       189 ~~~~-------------~~~~--------------~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  237 (385)
T TIGR00710       189 RIQI-------------STYF--------------ETFLLLLKS---KMFWGYA-LIYGASFGGFFAFFSGAPFVYIDIM  237 (385)
T ss_pred             cCCH-------------HHHH--------------HHHHHHHcC---chhHHHH-HHHHHHHHHHHHHHHcChHHHHHHc
Confidence            0000             0000              001112211   1111111 1111122233444556677665 45


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          270 KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      +.+... ........++..+++.++.+++.||+|||+....+..++
T Consensus       238 g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~  282 (385)
T TIGR00710       238 GVSPSV-FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILF  282 (385)
T ss_pred             CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            555443 334455666778899999999999999998766554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=8.4e-21  Score=179.78  Aligned_cols=277  Identities=15%  Similarity=0.185  Sum_probs=174.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+..+.+++.+..+++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+++.|++.|++.++..+....
T Consensus        52 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  131 (496)
T PRK03893         52 LTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSAT  131 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCCh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~  191 (319)
                      ++.|++|+++|++..+....+..+|...+..+...+   .+.++||+.|.+..++.++..+....+||++++...+++ .
T Consensus       132 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~  207 (496)
T PRK03893        132 YVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV---VPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAG-K  207 (496)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccc-c
Confidence            999999999999988888888888876665544322   235789999987666655554455667887665322111 1


Q ss_pred             HHHHHHHHHHcCChhHHHHHHH-HHH----HHhhccccccch-------------hhhh-c-ccchhHHHHHHHHHHHHh
Q 047275          192 EKAKKMLQRVRGTADVQAELDD-LIR----ASIVSRTVKHPF-------------QTII-Q-RKYRPQLVMAILIPFFQQ  251 (319)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~-------------~~l~-~-~~~~~~~~~~~~~~~~~~  251 (319)
                      ++.++..+.....+........ ...    ............             .... + ...+...........+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (496)
T PRK03893        208 APVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFA  287 (496)
T ss_pred             ccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            1111111111000000000000 000    000000000000             0000 0 011111122222222222


Q ss_pred             hhhhhHhHhhhHHHHH-hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          252 LTGINVISFYAPVLFR-TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       252 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      ....+....+.|.+++ ..+.+... .........+...++.++.+++.||+|||+.++.+..
T Consensus       288 ~~~~~~~~~~lp~~l~~~~g~~~~~-~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~  349 (496)
T PRK03893        288 FLYSWPIQALLPTYLKTDLGYDPHT-VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLL  349 (496)
T ss_pred             HhccchHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            2222234567788875 55665543 3345556677788999999999999999988665543

>PRK03699 putative transporter; Provisional

Probab=99.89  E-value=2.7e-21  Score=178.08  Aligned_cols=251  Identities=11%  Similarity=0.038  Sum_probs=167.8

Q ss_pred             hhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHH
Q 047275           14 PEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLIL   93 (319)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~   93 (319)
                      +...+.+.++.+      .++.+.+.+.+...++..+++++.|++.||+|||+++..+..+..++..+++++++++.+++
T Consensus        27 g~~~~~i~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~  100 (394)
T PRK03699         27 GMVMGPIAEYFN------LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSI  100 (394)
T ss_pred             hhhhHHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence            444444444443      45677888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275           94 GRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus        94 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      .|+++|++.|...+....++.|++|+++|+...+.......+|...+. +.++...   ..++||+.|.+.+++.++..+
T Consensus       101 ~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        101 AMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA---RSIEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHH
Confidence            999999999999998999999999999999877666666666544333 3333322   236899999876666544333


Q ss_pred             hcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhh
Q 047275          173 GALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQL  252 (319)
Q Consensus       173 ~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  252 (319)
                      ..++ .+.|+.  .+++  ++         +  +              .+..+        ...+++.. ......+...
T Consensus       178 ~~~~-~~~p~~--~~~~--~~---------~--~--------------~~~~~--------~~~~~~~~-~~~~~~~~~~  218 (394)
T PRK03699        178 LTLF-SEFPAL--GKHA--PK---------A--D--------------KPVAK--------EKWGIGVL-FLAIAALLYI  218 (394)
T ss_pred             HHHh-cCCccc--cccC--cc---------c--c--------------Ccccc--------ccCChHHH-HHHHHHHHHH
Confidence            2222 222210  0000  00         0  0              00000        01122222 2223333333


Q ss_pred             hhhhHhHhhhHHHHH-hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          253 TGINVISFYAPVLFR-TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       253 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      ...+.+..|.|.+++ +.+.+..+.. ...........++.++.++++||++||+.+.....
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~  279 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLEDAG-NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG  279 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence            344556678888875 4566654433 33445556678999999999999999987665443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.88  E-value=1.1e-21  Score=184.46  Aligned_cols=252  Identities=17%  Similarity=0.149  Sum_probs=174.6

Q ss_pred             cccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--hhhhHHHHHHHHHhhhhhhccc
Q 047275           30 CKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        30 ~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      .+.++.+.+.+.+.++++..+++++.|+++||+|||+++..+.++..++.+++..+  .+++.+++.|+++|++.++..+
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~  150 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSP  150 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchh
Confidence            34567788899999999999999999999999999999999999999988876544  5688999999999999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCc-chHHHHHhhHHHHHHHHHhc-ccccCChhhHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGW-GWRISLSMAAAPASILTLGA-LILPDTPNSII  185 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~-~~l~es~~~~~  185 (319)
                      ....+++|++|+++|+++.+....+..+|.+++..+...+.   +.+ +||+.|.+.++++++..+.+ .+.+|+|+...
T Consensus       151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~---~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~  227 (465)
T TIGR00894       151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC---ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP  227 (465)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC
Confidence            99999999999999999999988888888766655543322   233 89999998887766654443 44567664311


Q ss_pred             hccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHH
Q 047275          186 QRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVL  265 (319)
Q Consensus       186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (319)
                        ..++++. +..++.             .+.+....+.+.+++++++.   + ..+......+......+.+..|.|.+
T Consensus       228 --~~~~~~~-~~i~~~-------------~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~lp~~  287 (465)
T TIGR00894       228 --CISKFEK-KYINSS-------------LQGQKGSTRQSLPIKAIPKS---L-PVWAIWFAIFGHFWLYTILPTYLPTF  287 (465)
T ss_pred             --CCCHHHH-HHHHhh-------------cccccCCCCCCCCHHHHhcC---H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0101111 111100             00000001112345554432   2 23344444555555667777888888


Q ss_pred             HHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047275          266 FRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRK  305 (319)
Q Consensus       266 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  305 (319)
                      +++ .+.+..... ....+..+...++.+++|+++||.++|
T Consensus       288 l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       288 ISWVLRVSGKENG-LLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHhCcChHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            754 566554433 445556677889999999999998754

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.88  E-value=1e-21  Score=178.58  Aligned_cols=254  Identities=15%  Similarity=0.142  Sum_probs=157.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhch-hhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAF-NVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~-~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      .++.+.+++.+...++..+++++.|+++||+|||+.++.+.++..++.+++++++ +++.+++.|+++|++.+. .+...
T Consensus        34 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~  112 (366)
T TIGR00886        34 LSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCM  112 (366)
T ss_pred             CCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHH
Confidence            4567888999999999999999999999999999999999999999999999999 999999999999999654 56678


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-----Hhhccc--cCCCcchHHHH-HhhHHH-HHHHHHhcccccCCh
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-----NYGTQK--IKGGWGWRISL-SMAAAP-ASILTLGALILPDTP  181 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-----~~~~~~--~~~~~gWr~~f-~~~~~~-~~~~~~~~~~l~es~  181 (319)
                      .+++|++|+++|++..+.......+|...+..+     ......  ..+..+||+.| ...++. .+...+.....+|+|
T Consensus       113 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       113 PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             HHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence            899999999999998777764444543333222     211111  01235799888 333333 233333445567765


Q ss_pred             hhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhh
Q 047275          182 NSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFY  261 (319)
Q Consensus       182 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (319)
                      +..    + +++ +...++  .....+.             +..+...+.++.   ++.+. ....++......+.+..+
T Consensus       193 ~~~----~-~~~-~~~~~~--~~~~~~~-------------~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~  247 (366)
T TIGR00886       193 PGK----P-ATG-KLSFKG--ARWSVGT-------------GALGDQLKVFRD---RHTWI-LALLYSVTFGSFLGVSSI  247 (366)
T ss_pred             ccc----c-cch-hccccc--ccccccc-------------hhHHHHHHHHhc---cchhh-HHHHHHHHHHHHHHHHHH
Confidence            421    0 000 000000  0000000             000011222221   22222 222223233334455566


Q ss_pred             hHHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhh
Q 047275          262 APVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGG  312 (319)
Q Consensus       262 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~  312 (319)
                      .|.++++ .+.+..+. .....+..+..+++.++.+++.||+|||+....+.
T Consensus       248 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~  298 (366)
T TIGR00886       248 FAMFFKDQFGLSKVTA-GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSF  298 (366)
T ss_pred             HHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHH
Confidence            6777654 46554433 34445566777889999999999999987654444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.88  E-value=3.9e-21  Score=177.02  Aligned_cols=231  Identities=18%  Similarity=0.213  Sum_probs=162.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+...+...++..+++++.|++.||+|||++++.+.+++.++.++++++++++.+++.|+++|++.|...+....
T Consensus        52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  131 (394)
T PRK10213         52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSAS  131 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            35677888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChhhHHhccCC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPNSIIQRSNG  190 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~~~~~~~~~  190 (319)
                      ++.|++|+++|++..+....+..+|.+.+..++..+.   +.++||+.|.+.++.+++..+. ....||+|++     + 
T Consensus       132 ~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~---~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-  202 (394)
T PRK10213        132 LTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG---ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-  202 (394)
T ss_pred             HHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-
Confidence            9999999999999888888878888766655544332   3478999998876655443332 3346665421     0 


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhH-hHhhhHHHHHhc
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINV-ISFYAPVLFRTI  269 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  269 (319)
                       ++..             +                 ..++.+   ++++.+..... .+........ ..+..|.+.++.
T Consensus       203 -~~~~-------------~-----------------~~~~~l---~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~  247 (394)
T PRK10213        203 -SHQK-------------Q-----------------NTFRLL---QRPGVMAGMIA-IFMSFAGQFAFFTYIRPVYMNLA  247 (394)
T ss_pred             -ccch-------------h-----------------HHHHHh---cCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence             0000             0                 001111   12222222222 2222222223 344568787777


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q 047275          270 KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVL  307 (319)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  307 (319)
                      +.+... ........++..+++.++.+++.||.+|+.+
T Consensus       248 g~s~~~-~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l  284 (394)
T PRK10213        248 GFGVDG-LTLVLLSFGIASFVGTSLSSFILKRSVKLAL  284 (394)
T ss_pred             CCChhH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence            766544 3344556667788999999999999655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=1.1e-21  Score=178.51  Aligned_cols=251  Identities=14%  Similarity=0.093  Sum_probs=163.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+..+.+.+.+...++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+++.|++.|++.|...+....
T Consensus        27 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  106 (379)
T TIGR00881        27 LSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGR  106 (379)
T ss_pred             CCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCChhhHHhccC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDTPNSIIQRSN  189 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~~~~~~~~~  189 (319)
                      ++.|++|+++|++..+....+..+|...+. +......   +.++||+.|.+.++..++ ..+...+.||+|+....+..
T Consensus       107 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (379)
T TIGR00881       107 TVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA---ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA  183 (379)
T ss_pred             HHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc
Confidence            999999999999988777777777766555 3333222   236899998876655444 33445567777643211110


Q ss_pred             ChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH-h
Q 047275          190 GHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR-T  268 (319)
Q Consensus       190 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  268 (319)
                      ++++.+       +.++.+    +  +.++..+..+...+.+++.   +..+ ......+......+....+.|.+++ .
T Consensus       184 ~~~~~~-------~~~~~~----~--~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (379)
T TIGR00881       184 EEMPNE-------EPDGDA----E--KKEEELTKKQIFLQYVLLN---KVLW-YISLGYVFVYVVRTGILDWSPLYLTQE  246 (379)
T ss_pred             ccCccc-------cccccc----c--cccccccchHHHHHHHHhc---chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000       000000    0  0000000000111222221   2222 2222222233334455566777765 4


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047275          269 IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLG  303 (319)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G  303 (319)
                      .+.+.... ........+..+++.++.+++.||.+
T Consensus       247 ~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       247 KGFSKEKA-SWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             hCCCHHHH-HHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            56554433 34455666778899999999999864

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.88  E-value=1e-20  Score=171.24  Aligned_cols=247  Identities=12%  Similarity=0.084  Sum_probs=166.4

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhch-----hhhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAF-----NVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~-----~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++.+.+.+.+...++..+++++.|+++||+|||++++.+.++..++..+..++.     +++.+++.|+++|++.+...+
T Consensus        32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  111 (365)
T TIGR00900        32 SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP  111 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            457788899999999999999999999999999999999999988888887777     999999999999999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhccc--ccCChhhHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALI--LPDTPNSII  185 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~--l~es~~~~~  185 (319)
                      ...+++.|++|+++|++..+....+..+|.+.+..++....   +.++||+.|.+.++..++..+..+.  .||+++.  
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  186 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY---ATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS--  186 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc--
Confidence            99999999999999999988888888888776665543322   2368999988776655443333222  2333210  


Q ss_pred             hccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHH
Q 047275          186 QRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVL  265 (319)
Q Consensus       186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (319)
                        ++ ++..++.          ..   +.          ++.++.+++.+   .........+............+.|++
T Consensus       187 --~~-~~~~~~~----------~~---~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (365)
T TIGR00900       187 --EI-QALSNAV----------LR---DT----------REGIKFVLKNP---LLRTLLLLALLFNLVFAPAIVALFPYV  237 (365)
T ss_pred             --cc-cccchhH----------HH---HH----------HhHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence              00 0000000          00   00          01122222222   222222222222222222223567777


Q ss_pred             HHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHH
Q 047275          266 FRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGIL  314 (319)
Q Consensus       266 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~  314 (319)
                      .++ .+.+... ........++..+++.++.+++.||.|||++...+..+
T Consensus       238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  286 (365)
T TIGR00900       238 QSKYLGRGSTH-YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFV  286 (365)
T ss_pred             HHHHhCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence            765 5555443 33455566777889999999999999999887665443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.2e-21  Score=179.61  Aligned_cols=266  Identities=18%  Similarity=0.190  Sum_probs=193.6

Q ss_pred             cccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchh
Q 047275           30 CKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        30 ~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      .+++.++.+...+++.++..+|.++++.+.||++-.+.+....+++.+..+++....|++.+++.|++.|+..++.+|..
T Consensus        76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~  155 (495)
T KOG2533|consen   76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGV  155 (495)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHH
Confidence            33567889999999999999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             hHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcccc---CCCcchHHHHHhhHHHHHHHH-HhcccccCChhhHH
Q 047275          110 PLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKI---KGGWGWRISLSMAAAPASILT-LGALILPDTPNSII  185 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es~~~~~  185 (319)
                      ..+++.|+.+++||...+++.....+|.+.++++++.+..+   ....||||+|++.++..++.. +..+++|++|....
T Consensus       156 ~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~  235 (495)
T KOG2533|consen  156 VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW  235 (495)
T ss_pred             HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcc
Confidence            99999999999999999999999999999888888774322   233699999999888777654 45778999997321


Q ss_pred             hccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHH
Q 047275          186 QRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVL  265 (319)
Q Consensus       186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (319)
                      -  .+++|.+-..++....             +....+.+.+..++.+..+.++++ ...++.++.....+.+.+|+|.+
T Consensus       236 f--l~~~ek~~~~~~~~~~-------------~~~~~~~~~~~~~~~~a~~dp~vw-~~~l~~~~~~lv~~~~~~~lpl~  299 (495)
T KOG2533|consen  236 F--LTDEEKELVVERLRES-------------PSGGIENKFKWKGFKEALKDPGVW-PFSLCYFFLKLVNYGFSYWLPLY  299 (495)
T ss_pred             c--cchHHHHHHHHHHHhc-------------cCCCcccccCHHHHHHHHhchhHH-HHHHHHHHHhhccccHHHHHHHH
Confidence            1  1112211111111110             000000111222222222233333 44555555556667889999999


Q ss_pred             HHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----cCCchHHHHhh
Q 047275          266 FRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDK----LGRKVLFLVGG  312 (319)
Q Consensus       266 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~g~  312 (319)
                      +++ .+.+..+ ....+.+..+..+++.+++|+++||    ..+|.+.....
T Consensus       300 l~~~~~~s~~~-a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~  350 (495)
T KOG2533|consen  300 LKSNGGYSELQ-ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFL  350 (495)
T ss_pred             HHcCCCcChHH-hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            988 3344433 3356778888999999999999999    55665543333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.87  E-value=1.1e-20  Score=174.95  Aligned_cols=148  Identities=14%  Similarity=0.176  Sum_probs=121.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+....++..+.++++..++.++.|+++||+|||++++.+.+++.++++++++++|++.++++|+++|++.+...+....
T Consensus        48 ~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~  127 (413)
T PRK15403         48 ADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYV  127 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778889999999999999999999999999999999999999999999999999999999999999877777788


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPN  182 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~  182 (319)
                      ++.|++|+++|++..+.......+|...+..++....   +.+|||+.|.+.++..++..+. .+.+||+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~---~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        128 TVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM---HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            8999999999998777777777777666655544332   2368999998877765554433 456788753

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.87  E-value=8e-21  Score=179.05  Aligned_cols=243  Identities=14%  Similarity=0.058  Sum_probs=153.3

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      +++.+.+.+.+..+++..++.++.|+++||+|||+++..+.+...++.++++++++++.+++.|+++|++.+... ....
T Consensus        68 ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~  146 (476)
T PLN00028         68 LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQY  146 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHH
Confidence            345677778888889999999999999999999999999999999999999999999999999999999988754 4566


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHH----HHHHhhccc--cCCCcchHHHHHhhHHHHHHHHHhcccccC-ChhhH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGA----NLLNYGTQK--IKGGWGWRISLSMAAAPASILTLGALILPD-TPNSI  184 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~----~~~~~~~~~--~~~~~gWr~~f~~~~~~~~~~~~~~~~l~e-s~~~~  184 (319)
                      +++|++|+++||+..+.......+|..++    ..+...+..  ..+..|||+.|.+.+++.++..+..+++++ .|.. 
T Consensus       147 ~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-  225 (476)
T PLN00028        147 WMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-  225 (476)
T ss_pred             HHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-
Confidence            88999999999998777654444443222    222111111  112358999999887776655444444443 3321 


Q ss_pred             HhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHH
Q 047275          185 IQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPV  264 (319)
Q Consensus       185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (319)
                          + .++.+   ++  +..+ +...             .+.+++.+   +.++++... ..++........+..+.|.
T Consensus       226 ----~-~~~~~---~~--~~~~-~~~~-------------~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~p~  277 (476)
T PLN00028        226 ----N-YRELK---KS--GTMP-KDSF-------------SKVLRYGV---TNYRTWILA-LTYGYSFGVELTMDNIIAE  277 (476)
T ss_pred             ----c-hhhHH---hc--Cccc-cccH-------------HHHHHHHH---cCchhHHHH-HHHHHHHHHHHHHHhHHHH
Confidence                0 00000   00  0000 0000             00111111   122222222 2222222222334456666


Q ss_pred             HHH-hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047275          265 LFR-TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRK  305 (319)
Q Consensus       265 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  305 (319)
                      ++. +.+.+.... .....+.++...++.+++|+++||+|||
T Consensus       278 ~l~~~~g~s~~~a-~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        278 YFYDRFGLSLETA-GAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHhcCCCHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            654 456665443 3556677788899999999999999876

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=4.4e-21  Score=178.21  Aligned_cols=253  Identities=17%  Similarity=0.245  Sum_probs=189.5

Q ss_pred             ccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--hhhhHHHHHHHHHhhhhhhcc
Q 047275           29 YCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~  106 (319)
                      ....++++++.+.++++.|.+++.+..|++.||+|-|+++.++.++.++++++...+  .+++.+++.|++||++.|...
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            345678899999999999999999999999999999999999999999999998766  455688999999999999999


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChhhH
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPNSI  184 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~~~  184 (319)
                      +....+.+.|+|++||+++.++...+..+|.+... +.+++.+.   .+||+.+|++.+..+++..+. .++..|+|...
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s---~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h  223 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES---SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH  223 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc---CCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence            99999999999999999998888888888876655 44444432   379999999988877765444 45567777642


Q ss_pred             HhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHH
Q 047275          185 IQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPV  264 (319)
Q Consensus       185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (319)
                      ...  .++|.+ .+++-.+             .+..+++.+.|++.+++    .+.++...++.+....+.+.+..|.|.
T Consensus       224 ~~i--s~~El~-~I~~~k~-------------~~~~~~~~~vP~~~i~t----s~~vwai~~~~f~~~~~~~~l~~y~Pt  283 (466)
T KOG2532|consen  224 PNI--SEKELK-YIEKGKS-------------EAHVKKKPPVPYKAILT----SPPVWAIWISAFGGNWGFYLLLTYLPT  283 (466)
T ss_pred             CCC--CHHHHH-HHHhccc-------------ccccCCCCCCCHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            111  111111 1111100             00011113557777763    334566777777788888888899999


Q ss_pred             HHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047275          265 LFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRK  305 (319)
Q Consensus       265 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  305 (319)
                      ++++ .+++..+ .++.+.+..+...+..+++|.++||.-+|
T Consensus       284 Y~~~VL~f~v~~-~G~~salP~l~~~~~k~~~g~lsD~l~~~  324 (466)
T KOG2532|consen  284 YLKEVLGFDVRE-TGFLSALPFLAMAIVKFVAGQLSDRLTFR  324 (466)
T ss_pred             HHHHHhCCChhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9875 4555544 44566677788889999999999998664

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=2.8e-20  Score=171.03  Aligned_cols=242  Identities=20%  Similarity=0.220  Sum_probs=163.8

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +..+.++..+...++..++.++.|+++||+|||+.++.+.+.+.++..+...+++++.+++.|+++|++.+...+....+
T Consensus        36 s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  115 (392)
T PRK10473         36 SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAI  115 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            45677788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH-HhcccccCChhhHHhccCCh
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es~~~~~~~~~~~  191 (319)
                      +.|++|+++|++..+.......+|...+..++....   +..+||+.|.+.++..++.. +..+.+||+++..   ++  
T Consensus       116 i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~---~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~--  187 (392)
T PRK10473        116 LRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM---LKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR---AP--  187 (392)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc---cC--
Confidence            999999999999887777776666555555443322   23689999887766554433 3345567764211   00  


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHH-HhcC
Q 047275          192 EKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLF-RTIK  270 (319)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  270 (319)
                      ++.           ...++.                 ++.++   +++.+.......+. .........+.|+++ ++.+
T Consensus       188 ~~~-----------~~~~~~-----------------~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g  235 (392)
T PRK10473        188 AAS-----------SKPREN-----------------SESLL---NRFFLSRLVITTLS-VTVILTFVNTSPVLLMEQMG  235 (392)
T ss_pred             Ccc-----------chHHHH-----------------HHHHh---CHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHcC
Confidence            000           000000                 00111   11111111111111 111223334456555 4456


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      .+... ........+...+++.++.+++.||+|||+..+.+..+.
T Consensus       236 ~~~~~-~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~  279 (392)
T PRK10473        236 FSRGE-YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF  279 (392)
T ss_pred             CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            65443 334455667778899999999999999999877666544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.87  E-value=1.9e-20  Score=175.42  Aligned_cols=252  Identities=16%  Similarity=0.078  Sum_probs=163.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc----hhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA----FNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a----~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      .++++.+...++..++..+++++.|+++||+|||++++.+.+++.++.++.+++    .+++.+++.|+++|++.|...+
T Consensus        60 ~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~  139 (452)
T PRK11273         60 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP  139 (452)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccch
Confidence            456888899999999999999999999999999999999999999998887765    3788899999999999999988


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHH-HHHHHHHhhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCChhhHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGV-LGANLLNYGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDTPNSII  185 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~~~~~  185 (319)
                      .....+.|++|+++|++..+....+..+|. +.+.+.......   ..+||+.|++.+++.++ ..+..+++||+|+...
T Consensus       140 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~  216 (452)
T PRK11273        140 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCG  216 (452)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC
Confidence            888889999999999998888877777763 334333221111   13799999887665554 3445667788876421


Q ss_pred             hccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcc-c-chhHHHHHHHHHHHHhhhhhhHhHhhhH
Q 047275          186 QRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQR-K-YRPQLVMAILIPFFQQLTGINVISFYAP  263 (319)
Q Consensus       186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (319)
                      .+ + +++.++   +..+      +.       ...++.+.+.++.+.. . +.+..+ ......+......+....|.|
T Consensus       217 ~~-~-~~~~~~---~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~P  277 (452)
T PRK11273        217 LP-P-IEEYKN---DYPD------DY-------NEKHEQELTAKQIFMQYVLPNKLLW-YIAIANVFVYLLRYGILDWSP  277 (452)
T ss_pred             CC-C-hhhhhh---cccc------cc-------ccccCCCccHHHHHHHHHHcChHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            11 0 111100   0000      00       0000011122222211 1 122222 232332222233455667888


Q ss_pred             HHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCch
Q 047275          264 VLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKL--GRKV  306 (319)
Q Consensus       264 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~  306 (319)
                      .++++ .+.+..... ....+.....+++.+++|+++||+  |||.
T Consensus       278 ~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        278 TYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             HHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            88876 456544433 334456677788999999999999  5554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.86  E-value=6.9e-20  Score=169.30  Aligned_cols=245  Identities=16%  Similarity=0.146  Sum_probs=159.3

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+...+.+.++..++.++.|+++||+|||++++.+.....++.++...+++++.+++.|+++|++.+...+....
T Consensus        45 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  124 (406)
T PRK15402         45 AGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYA  124 (406)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHH
Confidence            34577788888999999999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccCChhhHHhccCC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPDTPNSIIQRSNG  190 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es~~~~~~~~~~  190 (319)
                      ++.|.+|+++|++..+.......+|...+..+.....   +..+||+.|.+.++..++..+ .....||+++..   ++ 
T Consensus       125 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-  197 (406)
T PRK15402        125 AIQESFEEADAIKITALMANVALLAPLLGPLVGAALI---HVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-  197 (406)
T ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-
Confidence            9999999999887666655555555444443332221   235899998876666554333 334567764321   00 


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHH-Hhc
Q 047275          191 HEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLF-RTI  269 (319)
Q Consensus       191 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  269 (319)
                      +++.              .+.             .+.++.+++.   ++.+.......+.. ........+.|.++ +..
T Consensus       198 ~~~~--------------~~~-------------~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~  246 (406)
T PRK15402        198 KLSL--------------KEL-------------GRDYKLVLKN---RRFVAGALALGLVS-LPLLAWIALSPVILISGE  246 (406)
T ss_pred             cccH--------------HHH-------------HHHHHHHHcC---cHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHh
Confidence            0000              000             0011122211   22222222211111 11223334556665 445


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          270 KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      +.+..+ ............+++.++.+++.||+|+|+....+..++
T Consensus       247 g~~~~~-~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~  291 (406)
T PRK15402        247 QLSSYE-YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM  291 (406)
T ss_pred             CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            555433 223333444567788999999999999998876665443

>PRK10504 putative transporter; Provisional

Probab=99.86  E-value=6.7e-20  Score=172.59  Aligned_cols=274  Identities=13%  Similarity=0.116  Sum_probs=170.3

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      ++.+.++..+.+.++..++.++.|+++||+|||++++.+..++.++.++++++++++.++++|+++|++.|+..+....+
T Consensus        43 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~  122 (471)
T PRK10504         43 SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLT  122 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45677788888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChhhHHhccCCh
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~~~~~~~~~~  191 (319)
                      +.|++|+++|+...+.......+|...+..+...+   .+.++||+.|.+......+..+. ....|+.+..  .++.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l---~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~r~~~  197 (471)
T PRK10504        123 VMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL---VEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQ--TRRFDL  197 (471)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHHhCCCcccc--CCCCCh
Confidence            99999999999887777777777765554443222   12468999998866554443333 3344544321  011111


Q ss_pred             HHHHHHHH-------HHcCChh---HHHHHHH--------HHHHHhhccccccchh--hhhcccchhHHHHHHHHHHHHh
Q 047275          192 EKAKKMLQ-------RVRGTAD---VQAELDD--------LIRASIVSRTVKHPFQ--TIIQRKYRPQLVMAILIPFFQQ  251 (319)
Q Consensus       192 ~~a~~~~~-------~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~  251 (319)
                      ........       -..+...   .......        .......+++.+++..  ++++   +++........++ .
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~~-~  273 (471)
T PRK10504        198 SGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFR---TRTFSLGLAGSFA-G  273 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhc---ccchHHHHHHHHH-H
Confidence            11100000       0000000   0000000        0000000111112211  1222   2233333333333 2


Q ss_pred             hhhhhHhHhhhHHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          252 LTGINVISFYAPVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       252 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      ........++.|++++. .+.+.. ...+......+...++.++.+++.||+|||+++..+..++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~  338 (471)
T PRK10504        274 RIGSGMLPFMTPVFLQIGLGFSPF-HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLA  338 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            33345556778888875 555443 33344555666667777889999999999998876665443

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=1e-19  Score=169.72  Aligned_cols=112  Identities=17%  Similarity=0.239  Sum_probs=97.0

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh---hhchhhhHHHHHHHHHhhhhhhccch
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG---GAAFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~---~~a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      .++.+.+...+.++++..+++++.|++.||+|||+++..+.+++.++.+++   ..+++++.++++|+++|+|.|...+.
T Consensus        58 ~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~  137 (438)
T PRK10133         58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA  137 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh
Confidence            456888899999999999999999999999999999999999999999875   56899999999999999999999999


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL  143 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~  143 (319)
                      ...++.|+.|+++|+...+..+..+.+|...+.+.
T Consensus       138 ~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~  172 (438)
T PRK10133        138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_pred             HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998777777655666677777776555544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.85  E-value=8.6e-20  Score=168.74  Aligned_cols=241  Identities=17%  Similarity=0.083  Sum_probs=162.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHHHHHhhhhhhcc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-----FNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-----~~~~~li~~R~l~Gig~g~~~  106 (319)
                      +++.+.+++.+...+++.++.++.|++.||+|.|+++..+.++..+..+..+++     ++++.+++.|++.|++ |+..
T Consensus        67 ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f  145 (462)
T PRK15034         67 FTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANF  145 (462)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhH
Confidence            567889999999999999999999999999999999999999999999998876     8999999999999998 7788


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHHHH----HHHHH-HHh-hccc---------cCCCcchHHHHHhhHHHHHHHH
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAIGV----LGANL-LNY-GTQK---------IKGGWGWRISLSMAAAPASILT  171 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~----~~~~~-~~~-~~~~---------~~~~~gWr~~f~~~~~~~~~~~  171 (319)
                      +.....+++|+|+++||++.++......+|.    ++... +.. ..+.         ..+..+||....+..++.++..
T Consensus       146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~  225 (462)
T PRK15034        146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIAT  225 (462)
T ss_pred             HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999998877743333442    22221 111 0010         1123568887766665554444


Q ss_pred             Hh-cccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHH
Q 047275          172 LG-ALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQ  250 (319)
Q Consensus       172 ~~-~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  250 (319)
                      +. ++..+|.|.    ++.+.                                     ++...-.++++++ .+...+++
T Consensus       226 i~~~~~~~~~~~----~~~~~-------------------------------------~~~~~vlk~~~~W-llslly~~  263 (462)
T PRK15034        226 IAAWSGMNDIAS----SRASI-------------------------------------ADQLPVLQRLHLW-LLSLLYLA  263 (462)
T ss_pred             HHHHHhCCCccc----cccCH-------------------------------------HHHHHHhCCCchh-HHHHHHHH
Confidence            33 333444321    00000                                     0000011123333 34444566


Q ss_pred             hhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          251 QLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      .+.++...+++.|++.++.- + .........+..+...+..+++|+++||+|+|+.++++.+.+.+
T Consensus       264 tFG~fvg~s~~lp~~~~~~~-~-~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i  328 (462)
T PRK15034        264 TFGSFIGFSAGFAMLAKTQF-P-DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAI  328 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-C-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHH
Confidence            67777778888988876522 2 12222223344566778888999999999999988777765443

>PRK11043 putative transporter; Provisional

Probab=99.85  E-value=1.3e-19  Score=167.20  Aligned_cols=234  Identities=15%  Similarity=0.113  Sum_probs=155.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+...+...++..+++++.|+++||+|||+.+..+..+..++.+++.++++++.+++.|+++|++.+...+....
T Consensus        38 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  117 (401)
T PRK11043         38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQA  117 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCCh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~  191 (319)
                      ++.|++|+++|+...+.......+|...+..+....   .+.++||+.|.+.++..++..+..++++|+++.    ++ +
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~  189 (401)
T PRK11043        118 LVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWL---LNHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RK-Q  189 (401)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cc-c
Confidence            999999998887665555444445444443332221   123689999987776665554444455555421    00 0


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCC
Q 047275          192 EKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKL  271 (319)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (319)
                      ++.+                              ..++++++.   ++.......... .......+..+.|.++++.+.
T Consensus       190 ~~~~------------------------------~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~g~  235 (401)
T PRK11043        190 SQDA------------------------------LTFKQLLKS---KTYLGNVLIFAA-CSAAFFAWLTGSPFILEQMGY  235 (401)
T ss_pred             chHH------------------------------HHHHHHHcC---hhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHcCC
Confidence            0000                              001111111   111111111111 112233444567777777666


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Q 047275          272 SESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLF  308 (319)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  308 (319)
                      +... .............++.+..+++.||+|+|+..
T Consensus       236 s~~~-~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~  271 (401)
T PRK11043        236 SPAD-IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL  271 (401)
T ss_pred             CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            5443 33444455566778888999999999998754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.85  E-value=4.3e-20  Score=172.44  Aligned_cols=253  Identities=15%  Similarity=0.064  Sum_probs=162.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc----hhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA----FNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a----~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      +++++.++..+...++..+++++.|+++||+|||+.+..+.++..++.++.+..    .+++.+.+.|++.|++.|...+
T Consensus        58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~  137 (438)
T TIGR00712        58 FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWP  137 (438)
T ss_pred             CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchH
Confidence            456788899999999999999999999999999999999999999988876654    5677889999999999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHH-HHhcccccCChhhHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASIL-TLGALILPDTPNSII  185 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~l~es~~~~~  185 (319)
                      ....++.|++|+++||+..+....+..+|...+. +......   ...+||..|.+.++..++. .+..+++||+|+...
T Consensus       138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~---~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~  214 (438)
T TIGR00712       138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA---WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG  214 (438)
T ss_pred             HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence            8999999999999999998888877777654433 3333222   1258999998877765553 344566788775421


Q ss_pred             hccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHH
Q 047275          186 QRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVL  265 (319)
Q Consensus       186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (319)
                      .+ + .++.+.   +..+  +..++       ++.+.+.++.+.+..  .+.+..+..... .+......+....|.|.+
T Consensus       215 ~~-~-~~~~~~---~~~~--~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~  277 (438)
T TIGR00712       215 LP-P-IEEYRN---DYPD--DYNEK-------AEQELTAKEIFMQYV--LPNKLLWYIAIA-NVFVYLLRYGVLDWSPTY  277 (438)
T ss_pred             CC-C-chhccc---cccc--ccccc-------cccccchHHHHHHHH--ccCchHHHHHHH-HHHHHHHHHHHHHhHHHH
Confidence            00 0 000000   0000  00000       000000001111111  111222222222 222223345566788888


Q ss_pred             HHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047275          266 FRTI-KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRK  305 (319)
Q Consensus       266 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  305 (319)
                      +++. +.+.... .....+.++..+++.++.+++.||++++
T Consensus       278 l~~~~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       278 LKEVKHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHccCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            7764 5554433 3445566777889999999999999654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.85  E-value=1.2e-20  Score=182.62  Aligned_cols=263  Identities=14%  Similarity=0.176  Sum_probs=166.4

Q ss_pred             cccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhch-----------------------
Q 047275           30 CKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAF-----------------------   86 (319)
Q Consensus        30 ~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~-----------------------   86 (319)
                      +++++.+.+++.+++.++.+++.++.++++||+|||+.+.++.+++++++++.++.+                       
T Consensus        63 F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~  142 (633)
T TIGR00805        63 FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANS  142 (633)
T ss_pred             hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccc
Confidence            335678899999999999999999999999999999999999999999999887653                       


Q ss_pred             ----------------------------hhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHH
Q 047275           87 ----------------------------NVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVL  138 (319)
Q Consensus        87 ----------------------------~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~  138 (319)
                                                  .+..++++|+++|+|.++..+....++.|++|+++|+++.++...+..+|..
T Consensus       143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~  222 (633)
T TIGR00805       143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPA  222 (633)
T ss_pred             ccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhH
Confidence                                        2567889999999999999999999999999999999998888888888876


Q ss_pred             HHHHHHhhcccc-----------------CCCc--chHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHHHHHH
Q 047275          139 GANLLNYGTQKI-----------------KGGW--GWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQ  199 (319)
Q Consensus       139 ~~~~~~~~~~~~-----------------~~~~--gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~~  199 (319)
                      ++.+++..+...                 ++.|  .||..|++.++..++..+..+++|++.+....+.+  .+.++..+
T Consensus       223 lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~--~~~~~~~~  300 (633)
T TIGR00805       223 FGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN--VDVHETEK  300 (633)
T ss_pred             HHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc--hhhhhhhc
Confidence            665544322111                 0112  37888888777666655545566665321100000  00000000


Q ss_pred             HHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH-hcCCCchhhHH
Q 047275          200 RVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR-TIKLSESTSLL  278 (319)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  278 (319)
                      ...+..+...+...      ..++..+.++.+++   ++ ..+......+......+.+..|+|.+++ +.+.+..... 
T Consensus       301 ~~~~~~~~~~~~~~------~~~~~~~~~~~Ll~---n~-~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag-  369 (633)
T TIGR00805       301 LEKSEDKSRKKNSD------ITKDFPKIIKRLLC---NP-IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEAN-  369 (633)
T ss_pred             ccccccccchhhhh------hHHHHHHHHHHHHc---Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-
Confidence            00000000000000      00000112223332   22 3333434444444556677778888876 4666654433 


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhcCCc
Q 047275          279 MSAVVTGG-VSTIATITSMILTDKLGRK  305 (319)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~g~l~dr~Grr  305 (319)
                      +...+..+ ..+++.+++|+++||++++
T Consensus       370 ~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       370 FLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            32222232 4568999999999999864

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.85  E-value=8e-20  Score=162.35  Aligned_cols=259  Identities=15%  Similarity=0.096  Sum_probs=184.2

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ++..+.+.+.+.+.+...++-++.|.++||.+.|..+-.++++..+.+++.+++++.+.+.+.=++.|..=|+-.|+...
T Consensus        61 lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~  140 (448)
T COG2271          61 LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCAR  140 (448)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHH-HHHHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChhhHHhccC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLG-ANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPNSIIQRSN  189 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~~~~~~~~  189 (319)
                      .+..|+|+++||++.++++.+..+|..+ +.+...  .....+.+||..|++.++.++++.+. .+..+|+|+..-..  
T Consensus       141 ~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l--a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP--  216 (448)
T COG2271         141 TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL--AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP--  216 (448)
T ss_pred             HHHHHcCccccCceEEEehhhhhcccchHHHHHHH--HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC--
Confidence            9999999999999988888888887433 333311  11223468999999999887775554 55678888643211  


Q ss_pred             ChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhccc-chhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHh
Q 047275          190 GHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRK-YRPQLVMAILIPFFQQLTGINVISFYAPVLFRT  268 (319)
Q Consensus       190 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (319)
                         ..++    ..++..      +.+  .++++...-+.++++.+. .+++.++.+.++.......=+.+.-|.|.++.+
T Consensus       217 ---~ie~----~~~d~~------e~~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e  281 (448)
T COG2271         217 ---PIEE----YRGDPL------EIY--EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSE  281 (448)
T ss_pred             ---CHHH----hhcCch------hhh--hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence               1111    111000      000  000001112334443322 234455555555554444446677899999866


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHH
Q 047275          269 IKLSESTSLLMSAVVTGGVSTIATITSMILTDKL--GRKVLFL  309 (319)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~  309 (319)
                      .+.-+.........+.=...++|++++|+++||.  |||.++.
T Consensus       282 ~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~  324 (448)
T COG2271         282 VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA  324 (448)
T ss_pred             hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence            5544433333444455577889999999999995  7886653

>TIGR00896 CynX cyanate transporter

Probab=99.84  E-value=3e-19  Score=162.05  Aligned_cols=251  Identities=16%  Similarity=0.170  Sum_probs=163.9

Q ss_pred             hhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHH
Q 047275           14 PEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLIL   93 (319)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~   93 (319)
                      ++..+.+.+|.+      .++.+.++..+..+++..+++++.|++.||+|||+++..+.++..++...+ .+++.+.+++
T Consensus        20 ~~~lp~l~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~   92 (355)
T TIGR00896        20 GPLLPQIRSALG------MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA   92 (355)
T ss_pred             cccHHHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence            455556655554      456888999999999999999999999999999999999999888888777 7889999999


Q ss_pred             HHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHh
Q 047275           94 GRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG  173 (319)
Q Consensus        94 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~  173 (319)
                      .|++.|++.+...+....++.|++| ++|++..+....+..+|..++..+........ ..+||+.|...++..++..  
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-~~~w~~~f~~~~~~~~~~~--  168 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS-GGHWQQALAWWALPALLAL--  168 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHH--
Confidence            9999999999988888888999886 68998888888777777655544332221111 1249998876554433322  


Q ss_pred             cccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhh
Q 047275          174 ALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLT  253 (319)
Q Consensus       174 ~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  253 (319)
                      ..++||.++.     + +++         . .                 ..+.+.++.++.   ++.+. ..........
T Consensus       169 ~~~~~~~~~~-----~-~~~---------~-~-----------------~~~~~~~~~~~~---~~~~~-~~~~~~~~~~  211 (355)
T TIGR00896       169 LAWIPQVRRR-----V-AAN---------Q-T-----------------TTRLTPVRIWRS---PLAWQ-VTVFFGLQSG  211 (355)
T ss_pred             HHHhhhhccc-----c-CCC---------C-C-----------------CCCCCCchhhcC---HhHHH-HHHHHHHHHH
Confidence            2234443210     0 000         0 0                 000111222221   22222 2222222223


Q ss_pred             hhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHhhH
Q 047275          254 GINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLG-RKVLFLVGGI  313 (319)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~g~~  313 (319)
                      .++....|.|.++++.+.+... ........++..+++.+..+++.||++ ||+...++..
T Consensus       212 ~~~~~~~~lp~~~~~~g~~~~~-~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~  271 (355)
T TIGR00896       212 LYYSLIGWLPAILISHGASAAT-AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAV  271 (355)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Confidence            3445556788888776665443 334555667788899999999999994 5555444433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.84  E-value=6.2e-19  Score=162.48  Aligned_cols=135  Identities=20%  Similarity=0.158  Sum_probs=108.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--------hhhhHHHHHHHHHhhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--------FNVYMLILGRVLLGVGIG  103 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--------~~~~~li~~R~l~Gig~g  103 (319)
                      .+..+.+++.+..+++..+++++.|+++||+|||++++.+.+...+++..+.++        .+++.+++.|+++|++.+
T Consensus        48 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  127 (399)
T PRK05122         48 FSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGES  127 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHH
Confidence            346788899999999999999999999999999999999999888877665443        257789999999999999


Q ss_pred             hccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          104 FSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       104 ~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      ...+....++.|+.|+++|++..+....+..+|...+..++..+-   +.+|||..+.+..+..++
T Consensus       128 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        128 LAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY---HWGGLAGLGLLIMLLALL  190 (399)
T ss_pred             hhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHH
Confidence            999999999999999999999887777777777655544432221   236899988765555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.83  E-value=4.4e-19  Score=163.31  Aligned_cols=240  Identities=13%  Similarity=0.046  Sum_probs=156.8

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      ....+++.+.++++..++.++.|+++||+|||++++++.+++.+++++++++.+.   ++.|+++|++.+...|...+++
T Consensus        37 ~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i  113 (393)
T PRK11195         37 DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGIL  113 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888899999999999999999999999999999999999998887776664   7899999999999999999999


Q ss_pred             HhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHH
Q 047275          114 SEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEK  193 (319)
Q Consensus       114 ~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~  193 (319)
                      .|++|+++|+++++..+....+|.+.+..++..+..    +.|+..+.+.....++..+....+||++++...++.   +
T Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~---~  186 (393)
T PRK11195        114 TELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----PHAEAALAVCALIYLLAALFNLFIPRLGARRPGQSW---N  186 (393)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCC---C
Confidence            999999999999888888887776666555433221    247777766554433444445678887643111100   0


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHh-cCCC
Q 047275          194 AKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRT-IKLS  272 (319)
Q Consensus       194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  272 (319)
                      .....+             +..          +..+.+++.+..+.......   +.... .....+..|.++++ .+.+
T Consensus       187 ~~~~~~-------------~~~----------~~~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~lg~s  239 (393)
T PRK11195        187 PIALLR-------------DFF----------HACRVLWRDKLGRFSLAGTT---LFWGA-GATLRFLVLAWAPVALGIT  239 (393)
T ss_pred             HHHHHH-------------HHH----------HHHHHHHhCchhHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHcCCC
Confidence            000000             000          00122232222222221111   11111 12223344444443 4544


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHh
Q 047275          273 ESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVG  311 (319)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g  311 (319)
                      .. ..+......++..+++++..+++.||.++|+....+
T Consensus       240 ~~-~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g  277 (393)
T PRK11195        240 LN-QPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAG  277 (393)
T ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence            43 344566677778889999999999999988766554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.83  E-value=5.9e-19  Score=163.23  Aligned_cols=154  Identities=15%  Similarity=0.126  Sum_probs=119.9

Q ss_pred             hhhhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh---chh
Q 047275           11 KFFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA---AFN   87 (319)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~---a~~   87 (319)
                      .+.++..+.++++.+      .+..+.+.+.+..+++..+++++.|++.||+|||+++..+.+++.++.++...   .++
T Consensus        20 ~~~~~l~~~~~~~~~------~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~   93 (410)
T TIGR00885        20 DITNPMVPQFQQAFT------LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMN   93 (410)
T ss_pred             HhHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            344455555555554      34678889999999999999999999999999999999999999999887533   468


Q ss_pred             hhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHh-hcccc----------------
Q 047275           88 VYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNY-GTQKI----------------  150 (319)
Q Consensus        88 ~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~-~~~~~----------------  150 (319)
                      ++.+++.|++.|+|.|...+....++.|..|+++|++..+..+....+|...+..+.. .....                
T Consensus        94 ~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~  173 (410)
T TIGR00885        94 YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEE  173 (410)
T ss_pred             HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHH
Confidence            9999999999999999999999999999999999998877777777777655544432 21110                


Q ss_pred             ------CCCcchHHHHHhhHHHHHHH
Q 047275          151 ------KGGWGWRISLSMAAAPASIL  170 (319)
Q Consensus       151 ------~~~~gWr~~f~~~~~~~~~~  170 (319)
                            .+..+||++|.+.++..++.
T Consensus       174 ~~~~~~~~~~~w~~~fl~~a~~~~~~  199 (410)
T TIGR00885       174 LSAIKHSDLASVQTPYMIIGAVVLAV  199 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  01247999998776655443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12382 putative transporter; Provisional

Probab=99.83  E-value=9.2e-19  Score=161.00  Aligned_cols=234  Identities=15%  Similarity=0.199  Sum_probs=150.3

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHH---hh-----hchhhhHHHHHHHHHhhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL---GG-----AAFNVYMLILGRVLLGVGIG  103 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~---~~-----~a~~~~~li~~R~l~Gig~g  103 (319)
                      .+..+.+...+..+++..+++++.|+++||+|||++++.+.+...++.+.   ++     ...+++.++++|+++|++.+
T Consensus        48 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  127 (392)
T PRK12382         48 FGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGES  127 (392)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999988877765442   22     13688999999999999999


Q ss_pred             hccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhh
Q 047275          104 FSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNS  183 (319)
Q Consensus       104 ~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~  183 (319)
                      ...+....++.|+.|+++|++..+..+.+...|...+..++..+.   +.+|||+.+.+..+..++........||+++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (392)
T PRK12382        128 QLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH---SHFGFAALALTTMVLPLLAWAFNGTVRKVPAH  204 (392)
T ss_pred             HHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH---hccChHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            999888899999999999999888888777777666555443221   23689987765544333322222223333210


Q ss_pred             HHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhH
Q 047275          184 IIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAP  263 (319)
Q Consensus       184 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (319)
                          +++++             +                     .++..+...++. ....     ........+..+.|
T Consensus       205 ----~~~~~-------------~---------------------~~~~~~~~~~~~-~~~~-----l~~~~~~~~~~~~~  240 (392)
T PRK12382        205 ----AGERP-------------S---------------------LWSVVGLIWKPG-LGLA-----LQGVGFAVIGTFVS  240 (392)
T ss_pred             ----cccCc-------------h---------------------HHHHHHHHHHhH-HHHH-----HHHHHHhHHHHHHH
Confidence                00000             0                     000000000111 1111     11122333445566


Q ss_pred             HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          264 VLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      .++++.+.+..   .......+...+++.+..+++.||+|||+....+..+.
T Consensus       241 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~  289 (392)
T PRK12382        241 LYFASKGWAMA---GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVE  289 (392)
T ss_pred             HHHHhcCCchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHH
Confidence            66666554321   22333455566788899999999999998776655443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.83  E-value=8.1e-19  Score=159.97  Aligned_cols=238  Identities=14%  Similarity=0.160  Sum_probs=148.6

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHH-HHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILV-GGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~-~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ++.+.+.+.+...++..+.+++.|+++||+|||+.++. +.....++..+++++++++.+++.|+++|.+.+...+....
T Consensus        31 s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~  110 (375)
T TIGR00899        31 RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFA  110 (375)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            46778888888888889999999999999999887654 55556667778889999999999999999988888888888


Q ss_pred             HHHhcCCCCCCcch--hhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccCChhhHHhcc
Q 047275          112 YLSEMAPPKHRGAF--NIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPDTPNSIIQRS  188 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es~~~~~~~~  188 (319)
                      ++.|+.|+++|+..  .+....+..+|...+..+....   .+.++||+.|.+.+++.++..+ ..+++||+|+...   
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---  184 (375)
T TIGR00899       111 LAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWL---ALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP---  184 (375)
T ss_pred             HHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc---
Confidence            89999888877642  3444444555655444333222   1236899999988776555443 3455788764210   


Q ss_pred             CChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHH-H
Q 047275          189 NGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLF-R  267 (319)
Q Consensus       189 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  267 (319)
                      + +++          ..                     +.++.+++++.+...   ...+.. .........+.|.++ +
T Consensus       185 ~-~~~----------~~---------------------~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~  228 (375)
T TIGR00899       185 G-ALT----------RL---------------------EVRGLLASRDTRLLF---VACTLM-WGCNILYIINMPLLIIH  228 (375)
T ss_pred             c-ccC----------cc---------------------hhhhhhcCcchHHHH---HHHHHH-HHHHHHHHhhhHHHHHH
Confidence            0 000          00                     000111111111111   111111 111222334455554 4


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          268 TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      +.+.+..... ...........++.++.+++.||+|||+.+..+..
T Consensus       229 ~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~  273 (375)
T TIGR00899       229 ELGLPDKLAG-LMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAAL  273 (375)
T ss_pred             HcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHH
Confidence            5565544332 33334445567788899999999999987665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.83  E-value=1.2e-18  Score=158.03  Aligned_cols=249  Identities=14%  Similarity=0.099  Sum_probs=153.3

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhh-----chhHHH-HHHHHHHHHHHHHhhhc---hhhhHHHHHHHHHhhhhh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRAL-----GRKASI-LVGGVAFLAGSALGGAA---FNVYMLILGRVLLGVGIG  103 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~-----GRr~~~-~~~~~~~~~~~~~~~~a---~~~~~li~~R~l~Gig~g  103 (319)
                      +.++.+.+... .+...+ .+++|++.||+     ||||.+ +.+.+...+...+.++.   .+.+.+....++.|++.+
T Consensus        21 s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~   98 (356)
T TIGR00901        21 SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSA   98 (356)
T ss_pred             CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHH
Confidence            34566666433 333333 88999999998     899974 56677777766666666   466678888889999999


Q ss_pred             hccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccC-----CCcchHHHHHhhHHHHHHHHHhcc-cc
Q 047275          104 FSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIK-----GGWGWRISLSMAAAPASILTLGAL-IL  177 (319)
Q Consensus       104 ~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~gWr~~f~~~~~~~~~~~~~~~-~l  177 (319)
                      ...++..+++.|++|+++|++.++....+..+|.+.+..+........     ..|+||..|.+.++..++..+..+ ..
T Consensus        99 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~  178 (356)
T TIGR00901        99 TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLA  178 (356)
T ss_pred             HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999998888888888776655443222111     135599999888876655444433 34


Q ss_pred             cCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhH
Q 047275          178 PDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINV  257 (319)
Q Consensus       178 ~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (319)
                      ||+++.    .+++++.             +.+.             +++++++++++..++........++.. ...+.
T Consensus       179 ~e~~~~----~~~~~~~-------------~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  227 (356)
T TIGR00901       179 KEPQED----ASVPKPL-------------TQAV-------------LKPIREFFQRKNMIQALLLLLLIVLYK-LGDSA  227 (356)
T ss_pred             cCCCcc----cccchhH-------------HHHH-------------HHHHHHHHHhcCchHHHHHHHHHHHHH-HHHHH
Confidence            664221    0000000             0000             112233333332223333333333333 23344


Q ss_pred             hHhhhHHHHHhcCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          258 ISFYAPVLFRTIKLSESTSLLMSAVVTG-GVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      ...+.|.++++.+.+..+.. ......+ ...+++.++++++.||+|||+.++.+.++.
T Consensus       228 ~~~~~~~~l~~~g~~~~~~g-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  285 (356)
T TIGR00901       228 ATVLTTLFLLDMGFSKEEIA-LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQ  285 (356)
T ss_pred             HHHHHHHHHHHcCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44566666666665554332 3333333 456789999999999999988776665544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.83  E-value=9.6e-19  Score=157.20  Aligned_cols=221  Identities=26%  Similarity=0.367  Sum_probs=169.0

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+...+...++..+++++.|+++||+|||+.+..+.....++..+..+.++++.+++.|++.|++.+...+....
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  110 (352)
T cd06174          31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAA  110 (352)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCCh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~  191 (319)
                      ++.|+.|+++|++..+.......+|...+..+.....   +..+||+.+.+.++..++..+...+++             
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  174 (352)
T cd06174         111 LIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA---ESLGWRWLFLILAILGLLLALLLLFLL-------------  174 (352)
T ss_pred             HHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            9999999999999988888888888776665544332   224699998887766555444333332             


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhc-C
Q 047275          192 EKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTI-K  270 (319)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  270 (319)
                                                                    |+.. ......+......+....+.|.+.++. +
T Consensus       175 ----------------------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (352)
T cd06174         175 ----------------------------------------------RLLL-LLALAFFLLSFGYYGLLTYLPLYLQEVLG  207 (352)
T ss_pred             ----------------------------------------------HHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence                                                          0011 122222233334556666777777665 5


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-HHHHhhHHhh
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKV-LFLVGGILMF  316 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~g~~~~~  316 (319)
                      .+.. .........+....++.+..+++.||+|||+ .+..+..+..
T Consensus       208 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (352)
T cd06174         208 LSAA-EAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAA  253 (352)
T ss_pred             CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            5443 3445566777888999999999999999999 7766655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.9e-21  Score=174.12  Aligned_cols=153  Identities=17%  Similarity=0.195  Sum_probs=132.1

Q ss_pred             cccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccc
Q 047275           28 NYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++.+.++.+.+.+++.+.+..++.++++|+++||+.||+++.++.+++.++.++++++..||++.++|.+.|+|++...+
T Consensus        61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~  140 (493)
T KOG1330|consen   61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSP  140 (493)
T ss_pred             HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcc
Confidence            34445678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChh
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPN  182 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~  182 (319)
                      .++.+++|.+|.++|+++.++++.+..+|..++.+.+..+.....  .|||.|...++.++++.+. .++.+|.++
T Consensus       141 ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  141 IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            999999999999999999999999999987777666554444332  3999999888877765544 555666543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.83  E-value=1.1e-18  Score=160.01  Aligned_cols=249  Identities=15%  Similarity=0.189  Sum_probs=159.7

Q ss_pred             hhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHH
Q 047275           14 PEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLIL   93 (319)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~   93 (319)
                      ++..+.+.+|.+      .+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++..++++++|++.+++
T Consensus        26 ~~~lp~~~~~~~------~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (381)
T PRK03633         26 NTLVPLWLAQEH------LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLA   99 (381)
T ss_pred             HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            344444444444      34578899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhc-cccCCCcchHHHHHhhHHHHHHHHH
Q 047275           94 GRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGT-QKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus        94 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      +|+++|++.+...+.....+.|..|+++|++..+....+..+|...+..+.... +.......|+..+..    ..+..+
T Consensus       100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~  175 (381)
T PRK03633        100 WRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVL----AAILPL  175 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH----HHHHHH
Confidence            999999999999888888888999999999988888888888876666554332 211111234332211    111111


Q ss_pred             hcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhh
Q 047275          173 GALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQL  252 (319)
Q Consensus       173 ~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  252 (319)
                      .....+|++.      + ++          .                     .+++.+.++.+.   ..... ...+...
T Consensus       176 ~~~~~~~~~~------~-~~----------~---------------------~~~~~~~~~~~~---~~~~~-~~~~~~~  213 (381)
T PRK03633        176 LFTRILNQQA------E-NH----------D---------------------STSIWPMLKLRQ---ARLGV-NGCIISG  213 (381)
T ss_pred             HHhcccCCCC------C-CC----------C---------------------CCCHHHHHHhcc---hHHHH-HHHHHHH
Confidence            1112222110      0 00          0                     001111111111   11111 1111111


Q ss_pred             hhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          253 TGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      ........+.|.++++.+.+... ......+..+...++.+..+++.||+|||+.+..+..++
T Consensus       214 ~~~~~~~~~lp~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~  275 (381)
T PRK03633        214 IVLGSLYGLMPLYLNHQGMSDAS-IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVV  275 (381)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHH
Confidence            22233345678887776665443 334444666777889999999999999998776554443

>TIGR00897 2A0118 polyol permease family

Probab=99.82  E-value=3.4e-18  Score=157.91  Aligned_cols=239  Identities=15%  Similarity=0.117  Sum_probs=153.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh---h-chhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG---A-AFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~---~-a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      .+..+.+...+.+.++..+++++.|++.||+|||+++..+..++.++.+++.   . ..+++.+++.|+++|++.+...+
T Consensus        45 ~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~  124 (402)
T TIGR00897        45 LSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAY  124 (402)
T ss_pred             CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHh
Confidence            4567888899999999999999999999999999999999999988876542   3 35788999999999999998888


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHH-HHHHHHH-hhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCChhhH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGV-LGANLLN-YGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDTPNSI  184 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~~-~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~~~~  184 (319)
                      ....++.|++|+++|++.++....+..+|. +.+..++ +..    +.+||+..++.......+ ..+..+..+|.++..
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (402)
T TIGR00897       125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI----PAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ  200 (402)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence            888889999999999999999888888875 4444443 332    234543322221111111 112223334332110


Q ss_pred             HhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHH
Q 047275          185 IQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPV  264 (319)
Q Consensus       185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (319)
                        +.+++++.             +    +.          ++.++++++   .|+.+..... .+.+....+....|.|.
T Consensus       201 --~~~~~~~~-------------~----~~----------~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~p~  247 (402)
T TIGR00897       201 --HMQTREKF-------------S----EL----------GKAATILFT---NPNVLLGGMV-RIINTIGLFGFAVFLPM  247 (402)
T ss_pred             --cccCCcch-------------h----hH----------HHHHHHHHc---ChhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence              00000000             0    00          001112222   2223322322 33333445566678888


Q ss_pred             HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Q 047275          265 LFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLF  308 (319)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  308 (319)
                      +.++.+.+..+.. ....+..+...++.+..|+++||+|||+..
T Consensus       248 ~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       248 FVAELGFSTSEWL-QIWGTFFFTNIVFNVIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            8888777655433 333455677889999999999999988764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.82  E-value=4.1e-18  Score=156.77  Aligned_cols=161  Identities=18%  Similarity=0.228  Sum_probs=125.9

Q ss_pred             hhhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHH
Q 047275           12 FFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYML   91 (319)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~l   91 (319)
                      .+.+..+.+.+|.+      .++.+.++..+...++..+++++.|+++||+|||+.++.+..+..++.++..++++++.+
T Consensus        26 ~~~p~~~~i~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   99 (394)
T PRK11652         26 IYVPAIADMARDLN------VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVL   99 (394)
T ss_pred             HHhccHHHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            33344444444443      456788889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHH-
Q 047275           92 ILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASIL-  170 (319)
Q Consensus        92 i~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-  170 (319)
                      ++.|+++|++.+...+....+..|..++++|+...+....+..++...+..+.....   +.+|||+.|.+.++..++. 
T Consensus       100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT---TLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccChHHHHHHHHHHHHHHH
Confidence            999999999999888888888999999999998877777777777655554433221   2368999998876655443 


Q ss_pred             HHhcccccCCh
Q 047275          171 TLGALILPDTP  181 (319)
Q Consensus       171 ~~~~~~l~es~  181 (319)
                      .+..++.||++
T Consensus       177 ~~~~~~~~~~~  187 (394)
T PRK11652        177 FSMARWMPETR  187 (394)
T ss_pred             HHHHHhCCccC
Confidence            33345677765

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.81  E-value=5e-18  Score=160.57  Aligned_cols=228  Identities=15%  Similarity=0.172  Sum_probs=147.0

Q ss_pred             HHHhhhhhhhhhh-----chhHH-HHHHHHHHHHHHHHhhhc---hhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCC
Q 047275           50 IASLFASKVTRAL-----GRKAS-ILVGGVAFLAGSALGGAA---FNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK  120 (319)
Q Consensus        50 ig~~~~g~l~dr~-----GRr~~-~~~~~~~~~~~~~~~~~a---~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~  120 (319)
                      ++.+++|+++||+     |||+. ++.+.+...++....++.   .+++.+.+.|++.|++.+...+...+++.|++|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            7899999999999     99986 556666666666666564   47888999999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHHHHHHH
Q 047275          121 HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQR  200 (319)
Q Consensus       121 ~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~~~  200 (319)
                      +|++..+....+..+|.+.+..+...+..  ..+|||..|.+.+...++..+..++.||+++..    +++++.      
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~--~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~~~------  207 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLAD--RYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI----PVPKTL------  207 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc----ccccch------
Confidence            99999999998888887766544333221  136899999887766655555555578765320    000000      


Q ss_pred             HcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCCCchhhHHHH
Q 047275          201 VRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMS  280 (319)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (319)
                             +++             ..+++++.+++++..   ......+..............|++.++.+.+..+.. ..
T Consensus       208 -------~~~-------------~~~~l~~~~~~~~~~---~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g-~~  263 (491)
T PRK11010        208 -------EQA-------------VVAPLRDFFGRNNAW---LILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVG-LV  263 (491)
T ss_pred             -------hhh-------------HHHHHHHHHcCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HH
Confidence                   000             011233344322211   112122222222222233445555566676655433 33


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          281 A-VVTGGVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       281 ~-~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      . .......+++.+++|+++||+|||+.++++..
T Consensus       264 ~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~  297 (491)
T PRK11010        264 NKTLGLLATIVGALYGGILMQRLSLFRALMIFGI  297 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3 34445778999999999999999887655544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.80  E-value=9.9e-18  Score=154.66  Aligned_cols=141  Identities=20%  Similarity=0.160  Sum_probs=110.9

Q ss_pred             hhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhc
Q 047275           37 LTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEM  116 (319)
Q Consensus        37 ~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~  116 (319)
                      .+.+.+...++..+++++.|+++||+|||+.++.+.+...++.++...+++++.+++.|++.|++.+ ..+....++.|.
T Consensus        56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~  134 (408)
T PRK09874         56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQ  134 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHh
Confidence            4677788888999999999999999999999999999999998888889999999999999999855 556777888999


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccCCh
Q 047275          117 APPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPDTP  181 (319)
Q Consensus       117 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es~  181 (319)
                      .|+++|++..+.......+|...+..+...+.   +.++||+.|.+.++..++..+ ..+.++|.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (408)
T PRK09874        135 VPRNKSGWALGTLSTGGVSGALLGPLAGGLLA---DSYGLRPVFFITASVLFLCFLVTLFCIRENF  197 (408)
T ss_pred             cCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            99999999888887777777655544433221   236899998877765544333 344556653

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.79  E-value=1.9e-17  Score=152.83  Aligned_cols=244  Identities=16%  Similarity=0.144  Sum_probs=152.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh-----chhH-HHHHHHHHHHHHHHHhhhc---hhhhHHHHHHHHHhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL-----GRKA-SILVGGVAFLAGSALGGAA---FNVYMLILGRVLLGVGI  102 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~-----GRr~-~~~~~~~~~~~~~~~~~~a---~~~~~li~~R~l~Gig~  102 (319)
                      ++.++.+.+......  .+..+++|+++||+     |||| .+..+.+...++....++.   .+++.+.+..++.|+..
T Consensus        31 ~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~  108 (402)
T PRK11902         31 LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLS  108 (402)
T ss_pred             CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            356777777555544  68999999999999     8876 6778788777777666665   45778888888899999


Q ss_pred             hhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 047275          103 GFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPN  182 (319)
Q Consensus       103 g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~  182 (319)
                      +...++..+++.|++|+++|+++++....+..+|.+.+..+...+..  ..+|||..|.+.++..++..+...++||+++
T Consensus       109 ~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~--~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        109 ASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD--RVLGWGNTYLLMAGLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             HHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh--cccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999888888887666544332211  1258999998877665554444556677643


Q ss_pred             hHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhh
Q 047275          183 SIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYA  262 (319)
Q Consensus       183 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (319)
                      ..   ++ +++..+         +.                 ++.++++++++..+...   ...++..........+..
T Consensus       187 ~~---~~-~~~~~~---------~~-----------------~~~~~~l~~~~~~~~~l---~~~~l~~~~~~~~~~~~~  233 (402)
T PRK11902        187 PA---RP-PRSLGE---------AV-----------------VGPLRDFFSRRGAWALL---LLIVLYKLGDAFAGSLST  233 (402)
T ss_pred             cc---cc-cchhHH---------HH-----------------HHHHHHHHhCcCHHHHH---HHHHHHHhHHHHHHHHHH
Confidence            21   00 000000         00                 01122333222222222   211221111111222344


Q ss_pred             HHHHHhcCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchHHHHhhH
Q 047275          263 PVLFRTIKLSESTSLLMSAVVTG-GVSTIATITSMILTDKLGRKVLFLVGGI  313 (319)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~g~~  313 (319)
                      |++.++.+.+..... ......+ ...+++.++++++.||+|||+.+..+..
T Consensus       234 ~~l~~~~G~~~~~~g-~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~  284 (402)
T PRK11902        234 TFLIRGAGFSAGEVG-IVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGV  284 (402)
T ss_pred             HHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            555565666644332 3332223 3478899999999999999887654443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.79  E-value=5.5e-18  Score=157.17  Aligned_cols=243  Identities=13%  Similarity=0.036  Sum_probs=158.0

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh-----hchhhhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG-----AAFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~-----~a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++.+.+.+.+...++..+++++.|+++||+|||+++..+..+..++....+     ..++++.+++.|+++|++.+...+
T Consensus        50 s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  129 (417)
T PRK10489         50 STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVT  129 (417)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999888877776655433     256789999999999999998888


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhc
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQR  187 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~  187 (319)
                      ....++.|+.|+++|++..+.......+|...+..++..+.   +..+||+.|.+.++..++..+..+.+||+++..   
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  203 (417)
T PRK10489        130 ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI---AAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP---  203 (417)
T ss_pred             HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC---
Confidence            88899999999999999888877777777665554433221   124788888877666555555556677764321   


Q ss_pred             cCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH
Q 047275          188 SNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR  267 (319)
Q Consensus       188 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
                      .+++++.              ++   .          ++.++.+++.   +.........++...  .+.+..+.|.+.+
T Consensus       204 ~~~~~~~--------------~~---~----------~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~p~~~~  251 (417)
T PRK10489        204 QPREHPL--------------RS---L----------LAGFRFLLAS---PVVGGIALLGGLLTM--ASAVRVLYPALAD  251 (417)
T ss_pred             cccccch--------------HH---H----------HHHHHHHHcC---hHHHHHHHHHHHHHH--HHhHHHhhHHHHH
Confidence            0000000              00   0          0011112211   111111212222111  2334456677776


Q ss_pred             h-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHH
Q 047275          268 T-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGIL  314 (319)
Q Consensus       268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~  314 (319)
                      + .+.+... ........++..+++.++.+++.||.++++.+..+.++
T Consensus       252 ~~~g~~~~~-~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~  298 (417)
T PRK10489        252 EVWQMGAAQ-IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLG  298 (417)
T ss_pred             hccCCChhH-hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHH
Confidence            6 5655433 33444556677889999999999997777665555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.78  E-value=1.1e-17  Score=173.42  Aligned_cols=252  Identities=13%  Similarity=0.018  Sum_probs=156.4

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHH---hhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL---GGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~---~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ...+++.+.++++.+++++++|+++||+|||++++++.++..++.++   +..+.+++.++++|+++|++.|...+...+
T Consensus        47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            44677788899999999999999999999999999988766655544   334578999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcccc------CCCcchHHHHHhhH-HHHHHHHHhcccccCChhhH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKI------KGGWGWRISLSMAA-APASILTLGALILPDTPNSI  184 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~------~~~~gWr~~f~~~~-~~~~~~~~~~~~l~es~~~~  184 (319)
                      ++.|++|+++|+++++....+..+|.+++.+++..+...      ....+|++.+.+.. ...++.++..+.+||+|...
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAA  206 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCC
Confidence            999999999999999998888888877666554433211      00123444433333 33333334455678876532


Q ss_pred             HhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHH
Q 047275          185 IQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPV  264 (319)
Q Consensus       185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (319)
                      ..+.+  ++.         ... ..+.             .+.++.+++.+   ..........+... .......+.|.
T Consensus       207 ~~~~~--~~~---------~~~-~~~~-------------~~~~~~l~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~  257 (1146)
T PRK08633        207 PEVFD--KKK---------YLF-PKLL-------------WRNLKLLRSDR---VLWLAIIGLSYFWF-ISQLAQANFPA  257 (1146)
T ss_pred             ccccc--ccc---------ccc-HHHH-------------HHHHHHHhcCc---HHHHHHHHHHHHHH-HHHHHHHhhHH
Confidence            11100  000         000 0000             01122222221   12222221122112 22333344555


Q ss_pred             HH-HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          265 LF-RTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       265 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      ++ +..+.+......+.....++..+++.++.+++.||+++|+.+.++.+++
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~  309 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGL  309 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHH
Confidence            54 4556655413334555666777899999999999999987766555444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.7e-17  Score=147.64  Aligned_cols=243  Identities=17%  Similarity=0.158  Sum_probs=166.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhh---HHHHHHHHHhhhhhhccch
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVY---MLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~---~li~~R~l~Gig~g~~~~~  108 (319)
                      +++.+..++++...+.+.+.-++.|.+.||||-|++...+.++..+-.+..+++.+++   .+++.+.+.|++ |+..+.
T Consensus        46 LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav  124 (417)
T COG2223          46 LSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAV  124 (417)
T ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehc
Confidence            5679999999999999999999999999999999999999999999998888885555   999999999999 677788


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHH-HHHHhhccccCCCcc---hHHHHHhhHHHHHH-HHHhcccccCChhh
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGA-NLLNYGTQKIKGGWG---WRISLSMAAAPASI-LTLGALILPDTPNS  183 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~g---Wr~~f~~~~~~~~~-~~~~~~~l~es~~~  183 (319)
                      .+.++++|+||+++|.+.+++. .-.+|.... ........    ..+   ||..-.+..++.++ ....++...|.|..
T Consensus       125 ~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~----~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~  199 (417)
T COG2223         125 GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV----AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH  199 (417)
T ss_pred             ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence            8899999999999999888887 444443222 22222221    134   88776665555445 33445556666543


Q ss_pred             HHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhH
Q 047275          184 IIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAP  263 (319)
Q Consensus       184 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (319)
                      ....+.  .+.                               .+++.++   .+++++ .+...++.++.++-.++.+.|
T Consensus       200 r~~~~~--~~~-------------------------------~~~~~v~---~~~~~W-~lsllY~~tFG~Fvgfs~~l~  242 (417)
T COG2223         200 RASVKP--QLP-------------------------------AQLKAVF---SNKDTW-LLSLLYFATFGGFVGFSAYLP  242 (417)
T ss_pred             hccccc--cch-------------------------------hHHHHHh---cCcchH-HHHHHHHHHHHHHHHHHHHHH
Confidence            111100  000                               0011111   123333 455556667777788888889


Q ss_pred             HHHH-hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhhc
Q 047275          264 VLFR-TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVS  318 (319)
Q Consensus       264 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~~  318 (319)
                      .+++ +++.+.. .....+..........=.++|+++||+|.++.+++..+.|.++
T Consensus       243 ~~~~~~fg~~~~-~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~  297 (417)
T COG2223         243 MYLVTQFGLSPV-TAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA  297 (417)
T ss_pred             HHHHHhcCCChh-hHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence            8875 5565544 3334444444555555668999999999998877766666543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.76  E-value=1e-16  Score=147.52  Aligned_cols=235  Identities=15%  Similarity=0.191  Sum_probs=138.0

Q ss_pred             CcchhhHHhHHHHH-HHHHHHhhhhhhhhhhchhHHH-HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           33 NSQLLTTFTSSPFI-AGLIASLFASKVTRALGRKASI-LVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        33 ~~~~~~~~~~~~~~-g~~ig~~~~g~l~dr~GRr~~~-~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      +..+.+.+.++.++ +..++.+..++ .||+|||+.+ +.+.+...++..+.+++++++.+++.+.+.|...+...+...
T Consensus        49 s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  127 (393)
T PRK15011         49 RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMF  127 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            45677777665544 55666666666 9999999875 455566667777778889999887666555555556777778


Q ss_pred             HHHHhcCCCCCCc--chhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH-HhcccccCChhhHHhc
Q 047275          111 LYLSEMAPPKHRG--AFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGALILPDTPNSIIQR  187 (319)
Q Consensus       111 ~~i~e~~p~~~Rg--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es~~~~~~~  187 (319)
                      .++.|+.|+++|.  .+++....+..+|.+.+..++..+.   +++|||..|.+.++..++.. +.+.++||+++..   
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~---~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---  201 (393)
T PRK15011        128 ALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA---MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKEL---  201 (393)
T ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH---HhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCC---
Confidence            8888888777663  3445666666677665555443322   23689999988776655443 3355678765310   


Q ss_pred             cCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH
Q 047275          188 SNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR  267 (319)
Q Consensus       188 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
                       + ++ .        ++.+      .                  .++ +++..+.......... .....+..+.|.+++
T Consensus       202 -~-~~-~--------~~~~------~------------------~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~l~  244 (393)
T PRK15011        202 -P-LA-T--------GTLE------A------------------PRR-NRRDTLLLFVICTLMW-GTNSLYIINMPLFII  244 (393)
T ss_pred             -c-cc-c--------cccc------c------------------ccc-ccccHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence             0 00 0        0000      0                  000 0111111222222221 223334456776664


Q ss_pred             -hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhh
Q 047275          268 -TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGG  312 (319)
Q Consensus       268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~  312 (319)
                       +.+.+..... ..........+++.++.|+++||+|||+....+.
T Consensus       245 ~~~~~~~~~~g-~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~  289 (393)
T PRK15011        245 NELHLPEKLAG-VMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAA  289 (393)
T ss_pred             HHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence             4555543332 3333444566788999999999999998766544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.76  E-value=1.6e-16  Score=146.74  Aligned_cols=144  Identities=18%  Similarity=0.237  Sum_probs=117.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++...+...+...+...+.+++.|+++||+|||+++..+.....++.+.+..+++++.+++.|+++|++.+...+....
T Consensus        43 ~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~  122 (400)
T PRK11646         43 WAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTA  122 (400)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788888888888888999999999999999999999999999999999999999999999999999988888899


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH-HhcccccC
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGALILPD  179 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~e  179 (319)
                      ++.|++|+++|++..+.......+|...+..++....    .++||+.|.+.++..++.. +..+++||
T Consensus       123 ~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        123 LVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999888888888888666655443322    2689999988766554433 22344554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.76  E-value=1.5e-17  Score=155.98  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=109.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHH-HHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLIL-GRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~-~R~l~Gig~g~~~~~~~  110 (319)
                      .+..+.++..+.++++..++.++.|+++||+|||++++.+.+++.++.++++++++++.+++ .|+++|++.|...++..
T Consensus        51 ~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~  130 (455)
T TIGR00892        51 ATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSL  130 (455)
T ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHH
Confidence            35577888888888888999999999999999999999999999999999999999998875 57999999998777777


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      .++.|++| ++|++..+....+..+|...+..+ +...    +.+|||+.|.+.++..++..+
T Consensus       131 ~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~----~~~gwr~~f~~~~~~~~~~~v  188 (455)
T TIGR00892       131 TMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF----ESFGWRGSFLILGGLLLHCCV  188 (455)
T ss_pred             HHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH----HHhChHHHHHHHHHHHHHHHH
Confidence            88899986 789998888888888775544433 3322    246899999887766554333

>PRK10054 putative transporter; Provisional

Probab=99.74  E-value=8.4e-17  Score=148.26  Aligned_cols=146  Identities=12%  Similarity=0.055  Sum_probs=116.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+..+.++..+...+++.+++++.|+++||+|||++++.+.+...++.++.+++++++.++++|.+.|.+.+...+....
T Consensus        40 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  119 (395)
T PRK10054         40 LSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKA  119 (395)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678888888889999999999999999999999999999999998888889999999999999999988888888899


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccCCh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPDTP  181 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es~  181 (319)
                      +..|..|+++|++..+.......+|...+..++....    ..+||..|.+.++..++..+ ..+++||++
T Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~----~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        120 WFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV----MQSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999998877777777777665554443332    14799998876665554333 334455553

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.74  E-value=5.8e-16  Score=146.51  Aligned_cols=132  Identities=24%  Similarity=0.297  Sum_probs=101.2

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      ++...|+...+.++..++.++.|+++|.||||.+++.+.++..+|+++++-++|...++.+-.+.|+|.|.... ....+
T Consensus        77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~i  155 (599)
T PF06609_consen   77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAI  155 (599)
T ss_pred             CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHH
Confidence            45666888889999999999999999999999999999999999999999999999999999999999877764 55668


Q ss_pred             HhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          114 SEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       114 ~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      +|..|.|.|+................+...+..+   ..+.+|||.|++.++...+
T Consensus       156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~---~~~~~WRw~~~~~~i~~~i  208 (599)
T PF06609_consen  156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLF---AAHSGWRWIFYIFIIWSGI  208 (599)
T ss_pred             HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh---ccCCCcchHHHHHHHHHHH
Confidence            9999999998654433332222221222222211   2235799998876665444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.74  E-value=2.1e-16  Score=163.90  Aligned_cols=240  Identities=12%  Similarity=0.040  Sum_probs=151.7

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHH---HHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILV---GGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~---~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ...+...+.+++...+.+++.|+++||+|||+++..   ..+........+....+++.++++|+++|++.+...++..+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            345666777888999999999999999999997543   22233333333444589999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCCh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~  191 (319)
                      ++.|++|+++|+.+++..+.+..+|.+++.+++.++..   ..+|++.|....+..++..+..+++|+++...  .+. .
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  205 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI---SGNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDL-K  205 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCC-e
Confidence            99999999999999999999999988777665544322   35899988555555445555556677664310  000 0


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHh-cC
Q 047275          192 EKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRT-IK  270 (319)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  270 (319)
                      .+.           ....+.             ...++.+.+   .+.++. .....+........+..+.|.++++ .+
T Consensus       206 ~~~-----------~~~~~~-------------~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~g  257 (1140)
T PRK06814        206 IDR-----------NIIRST-------------ITLLKYAKA---DKRIWL-AILGISWFWLVGAVVLSQLPLLAKETLG  257 (1140)
T ss_pred             ecc-----------chHHHH-------------HHHHHHHhc---CchHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence            000           000000             001112221   122222 2222222222233444567777654 45


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFL  309 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~  309 (319)
                      .+.. .........++..+++.+..+++.||.++++...
T Consensus       258 ~~~~-~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~  295 (1140)
T PRK06814        258 GDEN-VATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP  295 (1140)
T ss_pred             CchH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh
Confidence            5543 3445556667778899999999998877665433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.71  E-value=2.8e-15  Score=138.17  Aligned_cols=247  Identities=14%  Similarity=0.094  Sum_probs=137.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh---hhc-----hhhhHHHHHHHHHhhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG---GAA-----FNVYMLILGRVLLGVGIG  103 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~---~~a-----~~~~~li~~R~l~Gig~g  103 (319)
                      .++.+.+...+...++..+++++.|+++||+|||+.++.+.....++....   .+.     .....+++.|++.|++.+
T Consensus        35 ~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  114 (396)
T TIGR00882        35 LSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFS  114 (396)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            456788899999999999999999999999999999988777665543321   111     223456778999999999


Q ss_pred             hccchhhHHHHhcCCCCCC--cchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhccc-ccCC
Q 047275          104 FSNQSVPLYLSEMAPPKHR--GAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALI-LPDT  180 (319)
Q Consensus       104 ~~~~~~~~~i~e~~p~~~R--g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~-l~es  180 (319)
                      ...+....++.|..+++.+  |.......++..+|...+..+    .    .++||.+|.+.+...++..+..+. .||+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l----~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       115 AGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGIL----F----SIDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             cchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhh----h----ccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            8888888888776443321  333333334444443333222    1    258999998877665554433333 4444


Q ss_pred             hhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHh
Q 047275          181 PNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISF  260 (319)
Q Consensus       181 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (319)
                      |+.        ++.++..+ ...+                 +...++++++++.   |+.+......+. ....++....
T Consensus       187 ~~~--------~~~~~~~~-~~~~-----------------~~~~~~~~~~l~~---~~~~~~~l~~~~-~~~~~~~~~~  236 (396)
T TIGR00882       187 PSS--------ATVANALG-ANAS-----------------AFSLKLALELFRQ---RKFWMFVLYVVG-VACVYDVFDQ  236 (396)
T ss_pred             chh--------hhhhcccc-cccC-----------------CCCHHHHHHHHcC---CcHHHHHHHHHH-HHHHHHHHHH
Confidence            321        00000000 0000                 0001112233322   222222222221 1222333333


Q ss_pred             hhHHHHHhcCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          261 YAPVLFRTIKLS---ESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       261 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      +.|.+++.....   ..........+..+...++.+..+++.||+|||+.+.++..++.
T Consensus       237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~  295 (396)
T TIGR00882       237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            445554443211   11222333445556677888999999999999998877766543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.71  E-value=3.3e-16  Score=143.18  Aligned_cols=262  Identities=14%  Similarity=0.116  Sum_probs=166.7

Q ss_pred             cCcch-hhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQL-LTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~-~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      +++++ .+.+.+.++.+.++..++.|+++||+|-|+++..+.+.+++.+++.+++.++..+.+.|++.|++.|+.. ...
T Consensus        58 lT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~  136 (511)
T TIGR00806        58 FTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYS  136 (511)
T ss_pred             CCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            34566 8899999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhh---HHHHHHHHHhcccccCChhhHHhc
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMA---AAPASILTLGALILPDTPNSIIQR  187 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~---~~~~~~~~~~~~~l~es~~~~~~~  187 (319)
                      .+++.|+|+++|+++.+....+..+|.+++.++..++.    .+|||+-+.+.   .....+.++..+++|..++.+.-+
T Consensus       137 syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~  212 (511)
T TIGR00806       137 SYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN  212 (511)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence            99999999999999999999999999777665554432    36888765432   233334445567788555544333


Q ss_pred             cCChHH-H-HHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHH
Q 047275          188 SNGHEK-A-KKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVL  265 (319)
Q Consensus       188 ~~~~~~-a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (319)
                      +++..+ . ....+........+.+ +..+ . ......+.-..++ +.-+..+.+....+......++++-+..|...+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~l~~~~-~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~L  288 (511)
T TIGR00806       213 RLEDVRGALPCELDQMVPGPGGKLE-DYLG-T-CRDSFLVRMLSEL-VTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTL  288 (511)
T ss_pred             cccccccccccccccCCCCCccccc-hhhh-h-hhhHHHHHHHHHH-HHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHH
Confidence            221100 0 0000000000000000 0000 0 0000000111111 122233334445555666778888888999888


Q ss_pred             HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047275          266 FRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKL  302 (319)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  302 (319)
                      .++..-+.+.-.+..-.+..+...++.+..|++-.++
T Consensus       289 W~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       289 WGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             HHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            8776443221111222233344556677777775554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.70  E-value=3e-15  Score=137.31  Aligned_cols=241  Identities=12%  Similarity=0.111  Sum_probs=148.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHH----HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASI----LVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~----~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      .+..+.+.+.++..+...++++++|+++||+||++..    ..+..++.+  ..+..+++++.+++.|+++|.+.++..+
T Consensus        36 ~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p  113 (382)
T TIGR00902        36 LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMP  113 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchh
Confidence            4578899999999999999999999999999985433    222222222  2445678999999999999999999888


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHh
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQ  186 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~  186 (319)
                      ....++.|+  +++|++..+......++|.+.+..+ +...    +.+|||..|.+......+..+ ...++|+++.   
T Consensus       114 ~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~----~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~---  183 (382)
T TIGR00902       114 IGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI----GMFDEQNILAILTAGLAFMLI-GFLIKPTIPP---  183 (382)
T ss_pred             HHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH----HHcChhHHHHHHHHHHHHHHH-HHHcCCCCCC---
Confidence            888887775  4667766666666666776555543 3322    236899998775544322222 2233443211   


Q ss_pred             ccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHH
Q 047275          187 RSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLF  266 (319)
Q Consensus       187 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (319)
                      +++ +++.        + .                 +..+.++++++   +|+.+......++.+.. ......+.|.++
T Consensus       184 ~~~-~~~~--------~-~-----------------~~~~~~~~~l~---~~~~~~~l~~~~l~~~~-~~~~~~~~~~~l  232 (382)
T TIGR00902       184 KDA-IPED--------E-S-----------------QGDSAFIALLK---NPMNLRFLAAVCLIQGA-HAAYYGFSAIYW  232 (382)
T ss_pred             Ccc-cccc--------c-c-----------------ccchhHHHHHc---ChHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            000 0000        0 0                 00011222222   23333333333333333 344444556666


Q ss_pred             HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          267 RTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      ++.+.+..... ....+..+.++++....+++.||+|+|+++.++.+++.
T Consensus       233 ~~~g~s~~~~g-~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~  281 (382)
T TIGR00902       233 QAAGISASATG-LLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACV  281 (382)
T ss_pred             HHCCCCHhHHH-HHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence            77776654433 34445667888899999999999999998887776664

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.69  E-value=4.3e-15  Score=136.25  Aligned_cols=242  Identities=12%  Similarity=0.088  Sum_probs=141.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchh----HHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRK----ASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr----~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      .+..+.+.+.+...++..+++++.|++.||+|||    +.+.......  .......+++++.+++.|++.|++.+...+
T Consensus        36 ~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~  113 (382)
T PRK11128         36 YTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVP  113 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHccccc
Confidence            3568889999999999999999999999999984    3332222221  222344568899999999999999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhc
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQR  187 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~  187 (319)
                      ...+++.++.+  +|++..+.......+|..++..++..+   .+++|||..|.+.++..++..+.....||.++.    
T Consensus       114 ~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l---~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----  184 (382)
T PRK11128        114 LTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKL---VSWFGEQAILWILTAGVASMLLGQLLRPTIMPQ----  184 (382)
T ss_pred             HHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHH---HHHcChhHHHHHHHHHHHHHHHHHHccCCCCCc----
Confidence            88888887743  445433444444455554444433322   123689999877665443333333344543211    


Q ss_pred             cCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH
Q 047275          188 SNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR  267 (319)
Q Consensus       188 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
                      .+ +++.         .+                 +..+.++++++.   |+.+......++.+.. ......+.|.+.+
T Consensus       185 ~~-~~~~---------~~-----------------~~~~~~~~i~~~---~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~  233 (382)
T PRK11128        185 GE-SRQQ---------ES-----------------AGWPAWKALLKE---PTVWRFLLCVSLLQGS-HAAYYGFSAIYWQ  233 (382)
T ss_pred             cc-cccc---------cc-----------------cccchHHHHHcC---hhHHHHHHHHHHHHHH-hHhHHHHHHHHHH
Confidence            00 0000         00                 001122333322   2222222222222222 2333344455656


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          268 TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      +.+.+... ......+..+...+.....+++.||+|+|+.+..+..++.
T Consensus       234 ~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~  281 (382)
T PRK11128        234 AAGYSAST-IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGV  281 (382)
T ss_pred             HCCCCHhH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            66666443 3334445566778888999999999999998776665544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.69  E-value=6.3e-16  Score=144.05  Aligned_cols=250  Identities=16%  Similarity=0.167  Sum_probs=153.0

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhh----hchh-HHHHHHHHHHHHHHHHhhhchh------hhHHHHHHHHHhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA----LGRK-ASILVGGVAFLAGSALGGAAFN------VYMLILGRVLLGV  100 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr----~GRr-~~~~~~~~~~~~~~~~~~~a~~------~~~li~~R~l~Gi  100 (319)
                      .++.+.+.+.+...+...+..++.|+++||    +||| +.++.+...+.++.+++...++      ...+++.+++.++
T Consensus        32 ~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (437)
T TIGR00792        32 LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGL  111 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence            457888889999999999999999999997    7885 4677777778877777666553      4567888999999


Q ss_pred             hhhhccchhhHHHHhcC-CCCCCcchhhHHHHHHHHHHHHHHHH-Hhhccc---cCCCcchHHHHHhhHHHHHHHH-Hhc
Q 047275          101 GIGFSNQSVPLYLSEMA-PPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQK---IKGGWGWRISLSMAAAPASILT-LGA  174 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~---~~~~~gWr~~f~~~~~~~~~~~-~~~  174 (319)
                      +.+....+..++..|.+ ++++|++..+....+..+|.++...+ ......   ..+.++||+.+.+.++..++.. +..
T Consensus       112 ~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~  191 (437)
T TIGR00792       112 FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICF  191 (437)
T ss_pred             HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888889987 56889988777777777764433322 222211   1234789999887776655543 334


Q ss_pred             ccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhh
Q 047275          175 LILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTG  254 (319)
Q Consensus       175 ~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  254 (319)
                      +..+|.+...    + .++.        ...+.                 ++.++.+++   +|+........++ ....
T Consensus       192 ~~~~e~~~~~----~-~~~~--------~~~~~-----------------~~~~~~l~~---~~~~~~~~~~~~~-~~~~  237 (437)
T TIGR00792       192 FGTKERYSEI----P-KNIE--------KKLSL-----------------KQIFKALFK---NDQLLILCLAYLF-YNLA  237 (437)
T ss_pred             cCCEecCCCC----C-cccc--------cCCCH-----------------HHHHHHHhC---CHHHHHHHHHHHH-HHHH
Confidence            5667754210    0 0000        00000                 001112221   2222222222222 2222


Q ss_pred             hhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          255 INVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      .+....+.+++.+........ ......+..+..+++.++.+++.||+|||+....+..++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~  298 (437)
T TIGR00792       238 FNIKNGVQVYYFTYVLGDPEL-FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMV  298 (437)
T ss_pred             HHHHcchhheeEeeecCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            333333445544332222222 2233444567788899999999999999998777765544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.69  E-value=6.7e-15  Score=138.95  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=103.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhchhhhH-HHHHHHHHhhhhhhccchh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAAFNVYM-LILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a~~~~~-li~~R~l~Gig~g~~~~~~  109 (319)
                      .+..+..++.+.+.....+..+++|+++|| +|||++++.+.+++.+++++++++.+... +.++|+++|+|.|...+..
T Consensus        47 ~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~  126 (489)
T PRK10207         47 FSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANP  126 (489)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCH
Confidence            345666677777776777778899999999 99999999999999999999998876554 5589999999999999999


Q ss_pred             hHHHHhcCCCCC--CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHH
Q 047275          110 PLYLSEMAPPKH--RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAA  165 (319)
Q Consensus       110 ~~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~  165 (319)
                      ..+++|.+|+++  |+...+.++.+..+|...+..++..+.   ++.|||+.|.+..+
T Consensus       127 ~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~---~~~gw~~~F~i~~i  181 (489)
T PRK10207        127 ASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA---DKFGYSVTYNLCGA  181 (489)
T ss_pred             HHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH---HhhChHHHHHHHHH
Confidence            999999998874  466667777778888766554433222   23689999988654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=8.1e-16  Score=134.88  Aligned_cols=109  Identities=18%  Similarity=0.106  Sum_probs=94.4

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      .....+.+.+++.++.++.++.+|.++||+|||++++.++....+...+-+.+.|+..++.+|++.|+.-|-. ....++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence            3567788899999999999999999999999999999999999999999999999988888899999997755 566789


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHH
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANL  142 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~  142 (319)
                      ++|.+++++|+..++..++.+++|.++++.
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPm  174 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPM  174 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcch
Confidence            999999999998777777777776554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.63  E-value=2.3e-14  Score=133.13  Aligned_cols=140  Identities=14%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh---hch-----hhhHHHHHHHHHhhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG---AAF-----NVYMLILGRVLLGVGIG  103 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~---~a~-----~~~~li~~R~l~Gig~g  103 (319)
                      .+..+.+.+.+...++..+++++.|+++||+|||++++.+.....++.....   .+.     ......+++++.|.+..
T Consensus        43 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (420)
T PRK09528         43 LSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFL  122 (420)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            4678899999999999999999999999999999999887666554433211   111     11112233444443333


Q ss_pred             hccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 047275          104 FSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALIL  177 (319)
Q Consensus       104 ~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l  177 (319)
                      ...+....+..+.  +++||+..+.......+|..++..+...+.    ..+||..|.+.++..++..+..+.+
T Consensus       123 ~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~----~~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        123 AGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILF----NINPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             cchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHH----hcCchHhHHHHHHHHHHHHHHHhcc
Confidence            3333333333222  234554433333333444333322222111    1378999888776665544444443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.62  E-value=5.2e-15  Score=140.19  Aligned_cols=166  Identities=14%  Similarity=0.144  Sum_probs=119.5

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHH---hhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL---GGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~---~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ...........++..++.++.|+++||+|||+++..+.+...++...   ...+.+...++++|++.|++.++.......
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~  365 (490)
T PRK10642        286 DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMAS  365 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556677788899999999999999999988877654443332   223456778889999999988887778888


Q ss_pred             HHHhcCCCCCCcchhhH-HHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhc---
Q 047275          112 YLSEMAPPKHRGAFNIG-FQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQR---  187 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~---  187 (319)
                      ++.|.+|++.||...+. .+++...|.+...+.++..+..   .+|+.++.+..+++++..+..+++||+|+++..+   
T Consensus       366 ~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~---~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~  442 (490)
T PRK10642        366 TLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST---QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATP  442 (490)
T ss_pred             HHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccc
Confidence            89999999999986553 5665555655555655544321   3577776666666666555666789999997653   


Q ss_pred             -cCChHHHHHHHHHHcC
Q 047275          188 -SNGHEKAKKMLQRVRG  203 (319)
Q Consensus       188 -~~~~~~a~~~~~~~~~  203 (319)
                       +++.+||++.++|.++
T Consensus       443 ~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        443 AASDIQEAKEILVEHYD  459 (490)
T ss_pred             cccchhhHHHHhhcccc
Confidence             2447889999988874

>TIGR00889 2A0110 nucleoside transporter

Probab=99.62  E-value=7.6e-14  Score=129.55  Aligned_cols=243  Identities=10%  Similarity=0.042  Sum_probs=140.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhch-hHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGR-KASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GR-r~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      ++..+.+++.++..++.++++++.|+++||+|| |+++..+.+...++..+..+.++++.+.+.|++.|++.++..+...
T Consensus        35 ~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  114 (418)
T TIGR00889        35 FSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTN  114 (418)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHH
Confidence            457889999999999999999999999999965 7788888888888888888889999999999999998777766555


Q ss_pred             HHHH--------hcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 047275          111 LYLS--------EMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPN  182 (319)
Q Consensus       111 ~~i~--------e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~  182 (319)
                      +...        |......|.+..+  .+++.+|.+++..+..       ...|+. |++.++..++..+..+++||+|+
T Consensus       115 ~l~~~~~~~~g~~~~~~~~~~r~~G--~lG~~ig~~l~g~l~~-------~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~  184 (418)
T TIGR00889       115 SISYANLPQAGLDVVTDFPPIRVMG--TIGFIAAMWAVSLLDI-------ELSNIQ-LYITAGSSALLGVFALTLPDIPV  184 (418)
T ss_pred             HHHHHHHhhcCCCchhcCCCeeeeh--hHHHHHHHHHHHHhcc-------cchhHH-HHHHHHHHHHHHHHHhcCCCCCC
Confidence            4432        2233233443332  2445555444433211       124654 44444433343344567888753


Q ss_pred             hHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhh
Q 047275          183 SIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYA  262 (319)
Q Consensus       183 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (319)
                      ..    +++++            +.++..             ....+++++.+   +........++.+. .......+.
T Consensus       185 ~~----~~~~~------------~~~~~~-------------~~~~~~~~k~~---~~~~~~~~~~~~~~-~~~~~~~~~  231 (418)
T TIGR00889       185 AK----STAKM------------SIKVML-------------GLDAFILFKNK---RMAIFFFFSMLLGA-PLQITNIFG  231 (418)
T ss_pred             Cc----ccccc------------CHHHHh-------------hhhHHHHhcCC---CeeeHHHHHHHHHh-HHHHHHHhH
Confidence            10    10000            000000             00011111111   11112222222211 112222344


Q ss_pred             HHHHHhcCCCch-------hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          263 PVLFRTIKLSES-------TSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       263 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      |.++++.+.+..       ........+..+.++++.+..++++||+|||++++++.+++.+
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v  293 (418)
T TIGR00889       232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWAL  293 (418)
T ss_pred             HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            555555443321       1223445556667888899999999999999998777765543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.59  E-value=4.2e-13  Score=126.57  Aligned_cols=134  Identities=14%  Similarity=0.188  Sum_probs=111.2

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      ++..+.+.+.+.+.++..+++++.|+++|| +|||+++..+.++..++.++.+++++++.++++|++.|+|.|+..+...
T Consensus        45 ~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~  124 (475)
T TIGR00924        45 FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPS  124 (475)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHH
Confidence            456778888899999999999999999999 8999999999999999999999998999999999999999999999999


Q ss_pred             HHHHhcCCCCC---CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHH
Q 047275          111 LYLSEMAPPKH---RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPAS  168 (319)
Q Consensus       111 ~~i~e~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~  168 (319)
                      .+++|++|+++   |+...+..+.+..+|...+..+...+.   ++.|||+.|.+.++..+
T Consensus       125 ~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~---~~~g~~~~f~~~~~~~~  182 (475)
T TIGR00924       125 SMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA---ENYGYHVGFNLAAVGMV  182 (475)
T ss_pred             HHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHH
Confidence            99999998764   777777777777777666654433222   23689999987665433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=5.9e-15  Score=130.23  Aligned_cols=141  Identities=18%  Similarity=0.154  Sum_probs=117.9

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      ++...+++.++..+.+++.+++.|++.||+|+|..++.++++....+++.++..+|++++++|.+||+|.+.......++
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam  183 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM  183 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence            35677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCC-CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhccc
Q 047275          113 LSEMAPPKH-RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALI  176 (319)
Q Consensus       113 i~e~~p~~~-Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~  176 (319)
                      ++|.+|+++ ||..+++.-.+.++|.+.+...+..+-   +..|.+.+|++.++.+++-....++
T Consensus       184 lAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY---e~~Gk~aPFlVL~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  184 LADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY---EFAGKSAPFLVLAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHcccchhhhHHHHHHHHHHhccceecCCcccchH---hhcCCcCcHHHHHHHHHHHHHHHHh
Confidence            999999765 799888888888888666554433221   2257889998877776654333333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.50  E-value=1.9e-13  Score=106.15  Aligned_cols=135  Identities=27%  Similarity=0.343  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCC
Q 047275           42 SSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKH  121 (319)
Q Consensus        42 ~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~  121 (319)
                      +...++..+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+....++.|..|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            34567888999999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccC
Q 047275          122 RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPD  179 (319)
Q Consensus       122 Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~e  179 (319)
                      |++..+.......+|...+..+....   .+..+||+.+.+.+...++..+ ..+..||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVL---AQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHH---hcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99988888888888766555443322   2346799988876665554433 3344454

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3e-13  Score=127.44  Aligned_cols=262  Identities=21%  Similarity=0.236  Sum_probs=164.7

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHH-HHHHHhhhhhhccchhhHH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLIL-GRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~-~R~l~Gig~g~~~~~~~~~  112 (319)
                      +...+++.+.......+.+++.+.+.||||.|++.+.+.++..++.+++.++++++.+++ .=++.|+|.|+.+.++.+.
T Consensus        80 ~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paivi  159 (509)
T KOG2504|consen   80 SSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVI  159 (509)
T ss_pred             ccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhh
Confidence            455788888888888899999999999999999999999999999999999999987765 4589999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHH-HHHHHHhhccccCCCcchHHHHHhhHHHHHHHH-HhcccccCChhhHHh---c
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVL-GANLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGALILPDTPNSIIQ---R  187 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es~~~~~~---~  187 (319)
                      +..+++ ++|+.++++...+.++|.+ .+.+..++.+    ..|||..+.+.+...+-.. .....-|.+++....   +
T Consensus       160 v~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~----~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~  234 (509)
T KOG2504|consen  160 LGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS----KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKD  234 (509)
T ss_pred             hhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH----HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhh
Confidence            997665 7789999999988888854 4455555443    3689998776554443322 233334433321100   0


Q ss_pred             cCC----hHHHHHHHHHHcCC-hhHHH-----HHHHHHHHHhhcc--ccccch----hhhhcccchhHHHHHHHHHHHHh
Q 047275          188 SNG----HEKAKKMLQRVRGT-ADVQA-----ELDDLIRASIVSR--TVKHPF----QTIIQRKYRPQLVMAILIPFFQQ  251 (319)
Q Consensus       188 ~~~----~~~a~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~--~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~  251 (319)
                      .++    .+.+....++.... +....     +.++..+.+...+  ..++.+    .+++    +.+..+.+.......
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll----~~~~fl~~~~~~~~~  310 (509)
T KOG2504|consen  235 LRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLL----KDPKFLLLALSNLFA  310 (509)
T ss_pred             hccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHH----cCchHHHHHHHHHHH
Confidence            000    00000000000000 00000     0000000000000  001111    1222    223344444444445


Q ss_pred             hhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047275          252 LTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRK  305 (319)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  305 (319)
                      ..+++.-..++|.+.++.+....... ....+.+...+++-++.|++.|+...+
T Consensus       311 ~~g~~~p~~~l~~~~~~~g~~~~~aa-~l~Siigi~~i~gRi~~G~laD~~~~~  363 (509)
T KOG2504|consen  311 YLGFNVPFVYLPSYAKSLGLSSNDAA-FLLSIIGVSDIIGRIILGLLADKPGIR  363 (509)
T ss_pred             HHHHHHHHHHHHHHHhhcCCChhhhH-HHHHHHHHhhhhhhhhhhhhcCccccc
Confidence            55666667788888887777766555 556677889999999999999998844

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.47  E-value=9.7e-12  Score=114.35  Aligned_cols=240  Identities=12%  Similarity=0.069  Sum_probs=135.0

Q ss_pred             CcchhhHHh--HHHHHHHHHHHhhh-hhhhhhhchhHHHHHHHHHHHH--HHHHh--hhchh-hhHHHHHHHHHhhhhhh
Q 047275           33 NSQLLTTFT--SSPFIAGLIASLFA-SKVTRALGRKASILVGGVAFLA--GSALG--GAAFN-VYMLILGRVLLGVGIGF  104 (319)
Q Consensus        33 ~~~~~~~~~--~~~~~g~~ig~~~~-g~l~dr~GRr~~~~~~~~~~~~--~~~~~--~~a~~-~~~li~~R~l~Gig~g~  104 (319)
                      ++++.+.+.  +...+..++.+++. ++..||+||||.+++...+...  ...+.  ....+ ...++..-++.++..+.
T Consensus        34 ~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  113 (390)
T TIGR02718        34 PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASAT  113 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence            467777763  55577777777777 4579999999987665533222  11111  11222 33445555666677777


Q ss_pred             ccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH-hhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhh
Q 047275          105 SNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN-YGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNS  183 (319)
Q Consensus       105 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~  183 (319)
                      ..+....+..|..++++++.+++....+..+|.+.+.... +..    +.+|||..|.+.+...++..+..++++|+++.
T Consensus       114 ~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~----~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~  189 (390)
T TIGR02718       114 QDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF----GKFGQRPAFLLVACVPLASLVCVLWLKDRAVA  189 (390)
T ss_pred             HHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            7777778888999999989887777777778876665432 322    23689999988776655544444444443211


Q ss_pred             HHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhH
Q 047275          184 IIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAP  263 (319)
Q Consensus       184 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (319)
                         +.+ .++  +             +              .++++++++++..   .......++.......... +.+
T Consensus       190 ---~~~-~~~--~-------------~--------------~~~~~~~l~~~~~---~~~~~~~~l~~~~~~~~~~-~~~  232 (390)
T TIGR02718       190 ---SPE-APL--A-------------R--------------RASLFRFFRRPLA---WSLLALALLSAMTAVSGFG-LSK  232 (390)
T ss_pred             ---ccc-cch--h-------------h--------------HHHHHHHHcCcCH---HHHHHHHHHHHHHHHHHHH-Hhh
Confidence               000 000  0             0              0012223322221   1222222222222222223 445


Q ss_pred             HHHHhcCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchHHHHhhHH
Q 047275          264 VLFRTIKLSESTSLLMSAVVTG-GVSTIATITSMILTDKLGRKVLFLVGGIL  314 (319)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~g~~~  314 (319)
                      .++++.+.+.+... ......+ ...+++.+..+++.||+|+|+....+..+
T Consensus       233 ~~l~~~G~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  283 (390)
T TIGR02718       233 LYLVDAGWPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGL  283 (390)
T ss_pred             HHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            55566676655433 3333333 34567788999999999999887655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.47  E-value=6e-12  Score=117.47  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=102.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhh----hhchhHHHHHH-HHHHHHHHHHhhhchhhhHHH------------HH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTR----ALGRKASILVG-GVAFLAGSALGGAAFNVYMLI------------LG   94 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~d----r~GRr~~~~~~-~~~~~~~~~~~~~a~~~~~li------------~~   94 (319)
                      .++.+.+.+.....+.+++..++.|+++|    |+|||+.++.. .....++..+.+++++...+.            +.
T Consensus        36 ~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~  115 (477)
T TIGR01301        36 IPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAII  115 (477)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHH
Confidence            35677788888888899999999999999    59999998876 444444445566665543221            13


Q ss_pred             HHHHh-----hhhhhccchhhHHHHhcCCCCCC--cchhhHHHHHHHHHHHHHHHHHhhc------ccc----CCC--cc
Q 047275           95 RVLLG-----VGIGFSNQSVPLYLSEMAPPKHR--GAFNIGFQVCTAIGVLGANLLNYGT------QKI----KGG--WG  155 (319)
Q Consensus        95 R~l~G-----ig~g~~~~~~~~~i~e~~p~~~R--g~~~~~~~~~~~~G~~~~~~~~~~~------~~~----~~~--~g  155 (319)
                      +++.|     ++.....++..++++|.+|+++|  +...+..+....+|.+++..++...      ...    .+.  .+
T Consensus       116 ~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~  195 (477)
T TIGR01301       116 VFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCAN  195 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccch
Confidence            44444     47788888889999999998865  4667777777777777666655432      100    010  25


Q ss_pred             hHHHHHhhHHHHHH-HHHhcccccCChh
Q 047275          156 WRISLSMAAAPASI-LTLGALILPDTPN  182 (319)
Q Consensus       156 Wr~~f~~~~~~~~~-~~~~~~~l~es~~  182 (319)
                      -|..|.+.++..++ ..+..+..+|.|.
T Consensus       196 ~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       196 LKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence            68889887776555 3344566888764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PTZ00207 hypothetical protein; Provisional

Probab=99.45  E-value=6.6e-13  Score=126.49  Aligned_cols=146  Identities=17%  Similarity=0.058  Sum_probs=106.2

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc------hhhhHHHHHHHHHhhhhhhc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA------FNVYMLILGRVLLGVGIGFS  105 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a------~~~~~li~~R~l~Gig~g~~  105 (319)
                      .+..+.+.+.+... ...++.++.|++.||+|||+++.++.+++.++.++++++      .+++.+++.|+++|+|.+..
T Consensus        59 ls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~  137 (591)
T PTZ00207         59 LTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLF  137 (591)
T ss_pred             cCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHH
Confidence            34455665554422 223466678999999999999999999999999999887      68999999999999999999


Q ss_pred             cchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHH-HHHHHhhccccCCCcchHHHHHhhHHHHHH-HHHhccc--ccCCh
Q 047275          106 NQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLG-ANLLNYGTQKIKGGWGWRISLSMAAAPASI-LTLGALI--LPDTP  181 (319)
Q Consensus       106 ~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~--l~es~  181 (319)
                      .+.....+.+|+| ++||++.++...+..+|..+ +.+......     .+|+..|++.++.+++ .++...+  .|++|
T Consensus       138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~  211 (591)
T PTZ00207        138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGILAIVFMRLPPFH  211 (591)
T ss_pred             HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHhheeCCcch
Confidence            8888899999997 78999999999888888643 433333322     2476666554544333 3333333  35555


Q ss_pred             hhH
Q 047275          182 NSI  184 (319)
Q Consensus       182 ~~~  184 (319)
                      ++.
T Consensus       212 ~~~  214 (591)
T PTZ00207        212 LTG  214 (591)
T ss_pred             hhc
Confidence            544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.45  E-value=2e-11  Score=107.16  Aligned_cols=253  Identities=19%  Similarity=0.199  Sum_probs=176.2

Q ss_pred             hhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHH
Q 047275           13 FPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLI   92 (319)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li   92 (319)
                      ++|..+++.+|++.+      ....+.+++...+...+.+++..+++.|+|-++.+..++++..+|..+=... +...++
T Consensus        31 vgPLL~~Ir~~~gls------~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~  103 (395)
T COG2807          31 VGPLLDEIRQDLGLS------FSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLF  103 (395)
T ss_pred             hhhhHHHHHHHhccc------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence            467788888787754      5889999999999999999999999999999999999999999999886555 788899


Q ss_pred             HHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275           93 LGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus        93 ~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      .+-.+.|.|++......+..+-|.+|++. +..++.+.....+|...+..+...+....  .+||..+.+-.+++++.++
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~  180 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALL  180 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998654 66677777777776554444333222111  4799988887777766555


Q ss_pred             hcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhh
Q 047275          173 GALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQL  252 (319)
Q Consensus       173 ~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  252 (319)
                      .|  +|...|..    . ...+                            +..++...++    +.+..+.....+-.+.
T Consensus       181 ~W--lPq~~r~~----~-~~~~----------------------------~~~~~~~~vw----~~~~aW~vtLfmGlqS  221 (395)
T COG2807         181 IW--LPQALREQ----A-ASIA----------------------------TKLVSVRKVW----RSPLAWQVTLFMGLQS  221 (395)
T ss_pred             HH--hhhccccc----c-cccc----------------------------cccccccccc----cCchhHHHHHHHHhhH
Confidence            43  33322110    0 0000                            0000111122    2222233333344445


Q ss_pred             hhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhhHHh
Q 047275          253 TGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGR-KVLFLVGGILM  315 (319)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~g~~~~  315 (319)
                      ..+|.+..|+|.++.+.|.+..++- ....+......+.++....+.+|..- |+..+....++
T Consensus       222 ~~~Y~~~~WLP~ili~~G~sa~~aG-~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~  284 (395)
T COG2807         222 LLYYIVIGWLPAILIDRGLSAAEAG-SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM  284 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            5567778899999999998877655 44556678889999999999998644 55544444444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.45  E-value=2.8e-11  Score=114.88  Aligned_cols=131  Identities=17%  Similarity=0.164  Sum_probs=95.8

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhch-hhhHHHHHHHHHhhhhhhccchhh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAAF-NVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a~-~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      +..+.....+.+........+++|+++|| +|||++++.+.+++.++..+++++. +.+.+.++|+++|+|.|...+...
T Consensus        55 s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~  134 (500)
T PRK09584         55 SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPS  134 (500)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHH
Confidence            34444555555444444555789999999 5999999999999999998888874 566778899999999999999998


Q ss_pred             HHHHhcCCCCC--CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHH
Q 047275          111 LYLSEMAPPKH--RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAP  166 (319)
Q Consensus       111 ~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~  166 (319)
                      .++.|++|+++  |+...+..+.+..+|...+..+...+.   +.+|||+.|.+.++.
T Consensus       135 ~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~---~~~g~~~~F~i~~i~  189 (500)
T PRK09584        135 SLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA---AKYGWSVAFALSVVG  189 (500)
T ss_pred             HHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH---HhhCHHHHHHHHHHH
Confidence            99999998654  333455566667777665554433222   246899999886643

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.38  E-value=1.4e-11  Score=116.34  Aligned_cols=249  Identities=14%  Similarity=0.084  Sum_probs=137.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhh----hhch-hHHHHHHHHHHHHHHHHhhhch------hhhHHHHHHHHHhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTR----ALGR-KASILVGGVAFLAGSALGGAAF------NVYMLILGRVLLGV  100 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~d----r~GR-r~~~~~~~~~~~~~~~~~~~a~------~~~~li~~R~l~Gi  100 (319)
                      +++...+.+....-+--.+..++.|+++|    |+|| |+.++++.....++..+.-..+      .+..+++.-++.++
T Consensus        39 ls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~  118 (473)
T PRK10429         39 LSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM  118 (473)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH
Confidence            45666666666666666788899999999    6799 4566667776666654443322      13456667777788


Q ss_pred             hhhhccchhhHHHHhcC-CCCCCcchhhHHHHHHHHHH-HHHHHHHhh---ccccCCCcchHHHHHhhHHHHHH-HHHhc
Q 047275          101 GIGFSNQSVPLYLSEMA-PPKHRGAFNIGFQVCTAIGV-LGANLLNYG---TQKIKGGWGWRISLSMAAAPASI-LTLGA  174 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~-~~~~~~~~~---~~~~~~~~gWr~~f~~~~~~~~~-~~~~~  174 (319)
                      +......+-.++..|.+ ++++|.+..+.-..+..+|. +.+.+....   .+...+..+|+....+.++..++ ..+..
T Consensus       119 ~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~  198 (473)
T PRK10429        119 TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL  198 (473)
T ss_pred             HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88888888889999998 68899986666445445442 222222211   11112224688776655554443 32334


Q ss_pred             ccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcc-cchhHHHHHHHHHHHHhhh
Q 047275          175 LILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQR-KYRPQLVMAILIPFFQQLT  253 (319)
Q Consensus       175 ~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~  253 (319)
                      +..+|.+.....+.+                                ++.+.++++.++. .++|+.+..+...++.. .
T Consensus       199 ~~~~e~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~-~  245 (473)
T PRK10429        199 RNVHEVYSSDNQVSA--------------------------------EGSHLTLKDIVALIYKNDQLSCLLGMALAYN-I  245 (473)
T ss_pred             cCceecCCccccccc--------------------------------cccCCCHHHHHHHHhcCHHHHHHHHHHHHHH-H
Confidence            445664321000000                                0001112222210 11233443333333332 2


Q ss_pred             hhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHH
Q 047275          254 GINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGIL  314 (319)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~  314 (319)
                      ..+....+.+++++......+ .........++..+++.++.+++.||+|||+.++++..+
T Consensus       246 ~~~~~~~~~~y~~~y~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~  305 (473)
T PRK10429        246 ASNIINGFAIYYFTYVIGDAD-LFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIF  305 (473)
T ss_pred             HHHHHhhheeeEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            333433444555444332222 222334445567788889999999999999987655544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.37  E-value=7.6e-12  Score=116.56  Aligned_cols=250  Identities=15%  Similarity=0.216  Sum_probs=146.3

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhh----hhchhHHHH-HHHHHHHHHHHHhhhc-h-------hhhHHHHHHHHH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTR----ALGRKASIL-VGGVAFLAGSALGGAA-F-------NVYMLILGRVLL   98 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~d----r~GRr~~~~-~~~~~~~~~~~~~~~a-~-------~~~~li~~R~l~   98 (319)
                      +++...+.+....-+-..+-.++.|.++|    |+|||+-++ .+.....++..+.... +       ....+.+.-++.
T Consensus        34 l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~  113 (428)
T PF13347_consen   34 LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILF  113 (428)
T ss_pred             CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHH
Confidence            45555666555555556677789999999    899887544 5666666666655544 3       234467778888


Q ss_pred             hhhhhhccchhhHHHHhcCC-CCCCcchhhHHHHHHHHHHH-HHHHHHhhccccCCC---cchHHHHHhhHHHHHHHHH-
Q 047275           99 GVGIGFSNQSVPLYLSEMAP-PKHRGAFNIGFQVCTAIGVL-GANLLNYGTQKIKGG---WGWRISLSMAAAPASILTL-  172 (319)
Q Consensus        99 Gig~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~---~gWr~~f~~~~~~~~~~~~-  172 (319)
                      .++......+..++..|.++ +++|.+..+.-..+..+|.+ ...+.........+.   .+|++...+.++...+..+ 
T Consensus       114 ~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i  193 (428)
T PF13347_consen  114 DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLI  193 (428)
T ss_pred             HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999997 57899887777777777764 233333222222111   3799988777666555443 


Q ss_pred             hcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhh
Q 047275          173 GALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQL  252 (319)
Q Consensus       173 ~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  252 (319)
                      .....+|.++..      +++.                         ...+.++.++++++.   |+....+...++ ..
T Consensus       194 ~~~~~ke~~~~~------~~~~-------------------------~~~~~~~~~~~~~~n---r~~~~l~~~~~~-~~  238 (428)
T PF13347_consen  194 TFFFVKERSVEV------TEQE-------------------------KKISLRDSLRSLFRN---RPFRILLLAFFL-QW  238 (428)
T ss_pred             hhheeeeccccc------cccc-------------------------cccccccchhhhccc---chHHHHHHHHHH-HH
Confidence            445567721100      0000                         000011223333332   223333333222 22


Q ss_pred             hhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          253 TGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      ...+......+++.+..-..++... .......+..+++.++.++++||+|+|+....+..+..+
T Consensus       239 ~~~~~~~~~~~y~~~~vl~~~~~~~-~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  239 LAFALMNTFLPYYFTYVLGNEGLIS-IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAAL  302 (428)
T ss_pred             hhhhhhhhHHHHHHHHHhcCchhhH-HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHH
Confidence            2333333444555544322222222 333455667788999999999999999988777766544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.34  E-value=1.2e-10  Score=110.41  Aligned_cols=245  Identities=16%  Similarity=0.188  Sum_probs=144.6

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh-----chhhhHHHHHHHHHhhhhhhccch
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA-----AFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~-----a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      +...+.+....++-.++.++++|.++||+.||++++.+.++..+...+.++     ..+.+.+++.-++.|++.+...|.
T Consensus        44 ~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA  123 (524)
T PF05977_consen   44 PLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPA  123 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777788888899999999999999999999999887765544332     257889999999999999999999


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhcc
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRS  188 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~  188 (319)
                      -.+++.|..|+++-..+++..+....+..+++..++..+-.   .+|=.+.|.+..+.-++..+....++..++.    +
T Consensus       124 ~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva---~~G~~~~f~inalsfl~~i~~l~~~~~~~~~----~  196 (524)
T PF05977_consen  124 WQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA---FFGAAAAFLINALSFLISILALLRWKPPPPP----S  196 (524)
T ss_pred             HHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccccccc----c
Confidence            99999999999998877777776666554433322221110   1234456666554322222222222222110    0


Q ss_pred             CChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHh
Q 047275          189 NGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRT  268 (319)
Q Consensus       189 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (319)
                      +  .+.+...+.+                       ++.++-+.+.+..+..+   ...+...+. ...+...+|.+.++
T Consensus       197 ~--~~~e~~~~~l-----------------------~~G~ryv~~~~~l~~~l---~~~~~~~l~-~~a~~aLlPl~a~~  247 (524)
T PF05977_consen  197 S--LPRERFFSAL-----------------------REGLRYVRSSPPLRSVL---LRSFLFNLF-ASAVWALLPLFARD  247 (524)
T ss_pred             c--cchhhhhhhH-----------------------HHHHHHHhcchHHHHHH---HHHHHHHHh-hhHHHHhhhHHHHH
Confidence            0  0001110000                       00011111111112111   111111111 12223346777654


Q ss_pred             -cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          269 -IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       269 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                       .+.+ ....++.....++..++|+++.+++.+|.+++++...+.+..
T Consensus       248 ~l~~~-a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~  294 (524)
T PF05977_consen  248 VLGGG-ASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLF  294 (524)
T ss_pred             HhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHH
Confidence             4444 344556666778888899999999999988887765555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.32  E-value=1.2e-11  Score=121.23  Aligned_cols=136  Identities=15%  Similarity=-0.007  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCC
Q 047275           41 TSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK  120 (319)
Q Consensus        41 ~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~  120 (319)
                      .....++.++|.++.|+++||+|||++++.+.++.+++.++.+++++...+++.+++.|++.++..+...++++|++|.+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~  680 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSD  680 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            44556788999999999999999999999999999999988888888888999999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHH-hhccccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 047275          121 HRGAFNIGFQVCTAIGVLGANLLN-YGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTP  181 (319)
Q Consensus       121 ~Rg~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~  181 (319)
                      .|++..++......+|.++++.+. .+..     .+...+|++.++..++..+...++||+.
T Consensus       681 ~Rgta~Gi~~~~~rlGaiigp~i~g~L~~-----~~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       681 KRATAFGFLNALCKAAAVLGILIFGSFVG-----ITKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999988888888888877666554 3322     1245677766666555555566778874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.5e-10  Score=101.78  Aligned_cols=246  Identities=15%  Similarity=0.160  Sum_probs=159.4

Q ss_pred             ccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh---hhchhhhHHHHHHHHHhhh
Q 047275           25 NVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG---GAAFNVYMLILGRVLLGVG  101 (319)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~---~~a~~~~~li~~R~l~Gig  101 (319)
                      +..+..+.+..+.+.+...++.|..++++..+++.+|+|+|+.++.++.++.++..+.   +...+|..++++-|+.|.|
T Consensus        38 ~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~G  117 (422)
T COG0738          38 HLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASG  117 (422)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            3444566778899999999999999999999999999999999999999999999886   4668999999999999999


Q ss_pred             hhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-Hhhccc-----c----------CCCcchHHHHHhhHH
Q 047275          102 IGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQK-----I----------KGGWGWRISLSMAAA  165 (319)
Q Consensus       102 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~-----~----------~~~~gWr~~f~~~~~  165 (319)
                      .|...+.+..|+....|+++........+.+.++|.+.+.++ ++++..     .          ..--.|++++...+.
T Consensus       118 i~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~  197 (422)
T COG0738         118 IGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAG  197 (422)
T ss_pred             hHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            999999999999999999877766777777777776554433 222220     0          001247888776555


Q ss_pred             HHHHHHHhccc--ccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHH
Q 047275          166 PASILTLGALI--LPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMA  243 (319)
Q Consensus       166 ~~~~~~~~~~~--l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  243 (319)
                      ..+++.+....  .||.+..-.      ++.                           +..+....++++.   |+....
T Consensus       198 ~lvll~v~~~~~k~p~~~~~~~------~~~---------------------------~~~~~~~~~l~~~---~~~~~g  241 (422)
T COG0738         198 LLVLLAVLILLSKLPDLQVAAP------SLG---------------------------ASGSAGLSSLFQN---KHLRLG  241 (422)
T ss_pred             HHHHHHHHHHhccCCcCCcccc------ccc---------------------------ccccchHHHHHhC---hHHHHH
Confidence            54444333322  233211000      000                           0000022333332   333333


Q ss_pred             HHHHHHHhhhhhhHhHhhhHHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Q 047275          244 ILIPFFQQLTGINVISFYAPVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLF  308 (319)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  308 (319)
                      ....++.... -..+..|++.++.+ .+.+..+...... ..=...++|-.++.++..|+...+.+
T Consensus       242 vl~~FlYVG~-Eva~gsfl~~y~~~~~g~~~~~aa~~~s-~~~~~~~vGRFig~~lm~~~~~~k~L  305 (422)
T COG0738         242 VLAIFLYVGA-EVAIGSFLVSYLEELLGLNEQQAAYYLS-FFWVGFMVGRFIGSALMSRIKPEKYL  305 (422)
T ss_pred             HHHHHHHHhH-HHHHHHHHHHHHHhcCCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            3333333333 23344556666555 4545544443333 33355678888888999999776654

>PRK09669 putative symporter YagG; Provisional

Probab=99.31  E-value=4.8e-11  Score=111.76  Aligned_cols=148  Identities=11%  Similarity=0.060  Sum_probs=94.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhh----hchhH-HHHHHHHHHHHHHHHhhhchh------hhHHHHHHHHHhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA----LGRKA-SILVGGVAFLAGSALGGAAFN------VYMLILGRVLLGV  100 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr----~GRr~-~~~~~~~~~~~~~~~~~~a~~------~~~li~~R~l~Gi  100 (319)
                      +++...+.+....-+.-.+..++.|+++||    +|||+ .++++...+.+...+....++      ...+++.-++.+.
T Consensus        42 ls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~  121 (444)
T PRK09669         42 LSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSL  121 (444)
T ss_pred             CCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence            456777777777777788999999999998    88854 555666666666555444432      4566777777787


Q ss_pred             hhhhccchhhHHHHhcC-CCCCCcchhhHHHHHHHHHHHHHH-----HHHhhccccCCCcchHHHHHhhHHHHHHHHH-h
Q 047275          101 GIGFSNQSVPLYLSEMA-PPKHRGAFNIGFQVCTAIGVLGAN-----LLNYGTQKIKGGWGWRISLSMAAAPASILTL-G  173 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~~~-----~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~  173 (319)
                      +......+-.++.+|++ ++++|++..+....+..+|..++.     +.... ..-....+|+..+.+.++.+.+..+ .
T Consensus       122 ~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~-~~~~~~~g~~~~~~i~~ii~~v~~~~~  200 (444)
T PRK09669        122 VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL-GKGDEQKGYFYAMMVMGLLGVVLFFCC  200 (444)
T ss_pred             HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            77777777788999998 568898765555555555533332     22221 1111235899887766655444333 3


Q ss_pred             cccccCC
Q 047275          174 ALILPDT  180 (319)
Q Consensus       174 ~~~l~es  180 (319)
                      .+..+|.
T Consensus       201 ~~~~~e~  207 (444)
T PRK09669        201 FFMTKER  207 (444)
T ss_pred             hCCeEEe
Confidence            3344443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.30  E-value=2.2e-11  Score=113.10  Aligned_cols=148  Identities=18%  Similarity=0.234  Sum_probs=109.6

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-h---hhhHHHHHHHHHhhhhhhccchhh
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-F---NVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-~---~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      .+.+...+...++..++.++.|++.||+|||+++..+.++..++..+...+ .   +++.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444666677777888889999999999999999999999888876655543 2   346778899999999999989989


Q ss_pred             HHHHhcCCCCCCcchhhHHH-HHHHHHHHHHHHHH-hhcccc--CCCcchHHHHHhhHHHHHH-HHHhcccccCChh
Q 047275          111 LYLSEMAPPKHRGAFNIGFQ-VCTAIGVLGANLLN-YGTQKI--KGGWGWRISLSMAAAPASI-LTLGALILPDTPN  182 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~-~~~~~~--~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~~  182 (319)
                      .+++|.+|+++||+..+..+ ....+|...+..++ +..+..  .+.+||+..|.+.++..++ ..+..++++|+.+
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999888875 45666765554443 333322  1126899988776665444 3344556777743

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.24  E-value=2.7e-10  Score=107.32  Aligned_cols=261  Identities=13%  Similarity=0.005  Sum_probs=140.0

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhc-----hhHHHHHHHHHHH-HHHHHhhhchhhh-HHHHHHHHHhhhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALG-----RKASILVGGVAFL-AGSALGGAAFNVY-MLILGRVLLGVGIGF  104 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~G-----Rr~~~~~~~~~~~-~~~~~~~~a~~~~-~li~~R~l~Gig~g~  104 (319)
                      +++.+.+.+.+...+...+-.+ +|+++||++     ||+.++++.++.. +.....+..++.. ...+.+++.+++.+.
T Consensus        58 ~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~  136 (468)
T TIGR00788        58 LDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKAL  136 (468)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            4556777777777777777665 999999998     7777777766652 3322233334544 444589999999999


Q ss_pred             ccchhhHHHHhcCCCCCCcchhhHHHHHHH---HHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 047275          105 SNQSVPLYLSEMAPPKHRGAFNIGFQVCTA---IGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTP  181 (319)
Q Consensus       105 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~---~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~  181 (319)
                      .-..+-.+..|..+ ++++..+...+..+.   +|.+++..++...   .+.++||..|.+.+...++..+...++||++
T Consensus       137 ~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l---~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       137 YDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL---LDKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             HHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH---HHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999998 555543333333332   4554443333221   1235899999876665555555566778864


Q ss_pred             hhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHH--HhhhhhhHhH
Q 047275          182 NSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFF--QQLTGINVIS  259 (319)
Q Consensus       182 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  259 (319)
                      +....+.  .++.........  .......             ++.++++.+..+++.......+.++  ....+. ...
T Consensus       213 ~~~~~~~--~~~~~~~~~~~~--~~~~~~~-------------~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~-~~~  274 (468)
T TIGR00788       213 AFVRPRI--GTYLEMNMALLT--LGVLANV-------------KVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA-SGS  274 (468)
T ss_pred             ccccccc--cccchhhhhhhh--hhHHHHH-------------HHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC-Cce
Confidence            2100000  000000000000  0000000             0001111111112333222222222  111111 111


Q ss_pred             hhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          260 FYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      ++. +..+..+.+... .+......++..+++....+++.+|++.|+++.++.++..+
T Consensus       275 ~f~-~~~~~lG~s~~~-~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~  330 (468)
T TIGR00788       275 VFC-ATTQCLPGGPSF-SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTL  330 (468)
T ss_pred             eEE-EEcccCCCCcch-hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence            111 111234555443 44555567788899999999999999999988877766554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.20  E-value=4.4e-09  Score=96.81  Aligned_cols=246  Identities=13%  Similarity=0.122  Sum_probs=143.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhc-hhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALG-RKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~G-Rr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      +++.+.+.+.+...+...++++++|.++||.+ +|+.+.+..+...+.........+++.+.+.-++..+...+..|..-
T Consensus        34 ~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~d  113 (400)
T PF03825_consen   34 FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSD  113 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHH
Confidence            56788999999999999999999999999986 56677666666666556666778888888888888888888888888


Q ss_pred             HHHHhcCCCCCC--cchhhHHHHHHHHHHHH-HH-HHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHh
Q 047275          111 LYLSEMAPPKHR--GAFNIGFQVCTAIGVLG-AN-LLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQ  186 (319)
Q Consensus       111 ~~i~e~~p~~~R--g~~~~~~~~~~~~G~~~-~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~  186 (319)
                      ++..+...++++  |+...-=++++.++... +. +.+.     .+..+..+.+++......+.....+.+|+.|+....
T Consensus       114 si~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~  188 (400)
T PF03825_consen  114 SIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGY-----LGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSA  188 (400)
T ss_pred             HHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhh-----hccccccHHHHHHHHHHHHHHHHHHhCCCCcccccc
Confidence            888888764332  22222222333333221 11 1111     111122234444444333333344567887631100


Q ss_pred             ccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHH
Q 047275          187 RSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLF  266 (319)
Q Consensus       187 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (319)
                      +    ++.    ++..                      .+....+++   +|+....+...++.+.+ ...+..|.+.++
T Consensus       189 ~----~~~----~~~~----------------------~~~~~~llk---~~~~~~Fll~~~l~~~~-~~~~~~f~~~yl  234 (400)
T PF03825_consen  189 K----ESV----KKLL----------------------GLDALKLLK---NPRFLVFLLAAFLIGIS-HAAYYTFFSIYL  234 (400)
T ss_pred             C----CCc----cccc----------------------chHHHHHhc---CccHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            0    000    0000                      000011221   23333333343333332 334445666677


Q ss_pred             HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          267 RTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      ++.+..+.........+..+.+++.....+++..|+|.|++++++.++.+
T Consensus       235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~  284 (400)
T PF03825_consen  235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYA  284 (400)
T ss_pred             HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            77774322333333345667899999999999999999999888877654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.19  E-value=4.4e-10  Score=103.53  Aligned_cols=143  Identities=17%  Similarity=0.129  Sum_probs=103.7

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +..+.+.+.+...++.+++.++.|+++||+|||+.+..+.....+.......+++.+.+++.|++.+++.|...+....+
T Consensus       250 ~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~  329 (393)
T PRK15011        250 PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLY  329 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666565566678899999999999999998887766555544444556788888899999999988888888888


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD  179 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~e  179 (319)
                      ..|..|+ +||...+..+....+|...+..+...+   .+.+||+..|.+..++.++..+..+++||
T Consensus       330 ~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        330 FQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIV---AEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8999885 588877777666667665555443322   22368999988877776665555555554

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.19  E-value=1.8e-10  Score=107.00  Aligned_cols=143  Identities=13%  Similarity=0.155  Sum_probs=106.2

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLS  114 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~  114 (319)
                      .+.+.+.+...++..++.++.|++.||+|||+.+..+.++..++..+.+++++.+.+++.+++.|++.+...+....++.
T Consensus       262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  341 (420)
T PRK09528        262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT  341 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666677777899999999999999999999999988888888888999999999999999999888888888999


Q ss_pred             hcCCCCCCcchhhH-HHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCCh
Q 047275          115 EMAPPKHRGAFNIG-FQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDTP  181 (319)
Q Consensus       115 e~~p~~~Rg~~~~~-~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~  181 (319)
                      |..|++.|+...+. .+....+|..++. +.++..    +.+|||..|.+.++..++ ..+....+++.+
T Consensus       342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~----~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY----DSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH----HhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999865332 4444555554433 333322    346899998876555444 333344445443

>PRK09848 glucuronide transporter; Provisional

Probab=99.18  E-value=1.2e-09  Score=102.35  Aligned_cols=101  Identities=18%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh----chhHHH-HHHHHHHHHHHHHhh-----hch--hhhHHHHHHHHHh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL----GRKASI-LVGGVAFLAGSALGG-----AAF--NVYMLILGRVLLG   99 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~----GRr~~~-~~~~~~~~~~~~~~~-----~a~--~~~~li~~R~l~G   99 (319)
                      ++..+.+.+.....+...+..++.|+++||.    |||+.+ +++.+...+...+..     ...  ....+++.-++.+
T Consensus        41 l~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (448)
T PRK09848         41 VGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLG  120 (448)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHH
Confidence            4567788888888888899999999999996    777755 445444444333321     111  2233455667788


Q ss_pred             hhhhhccchhhHHHHhcCC-CCCCcchhhHHHHH
Q 047275          100 VGIGFSNQSVPLYLSEMAP-PKHRGAFNIGFQVC  132 (319)
Q Consensus       100 ig~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~  132 (319)
                      ++.+...++..++..|..+ +++|....+.-..+
T Consensus       121 ~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~  154 (448)
T PRK09848        121 LCYSLVNIPYGSLATAMTQQPQSRARLGAARGIA  154 (448)
T ss_pred             HHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHH
Confidence            8888888888788888775 46788765554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.18  E-value=3.8e-10  Score=101.23  Aligned_cols=140  Identities=25%  Similarity=0.287  Sum_probs=117.9

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhH-HHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKA-SILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~-~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ++.+.+.......++..++.++.+++.||+|||+ .+..+.....++.+.....++.+.+.+..++.|++.+...+....
T Consensus       209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  288 (352)
T cd06174         209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT  288 (352)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHH
Confidence            4567778888899999999999999999999999 999999999999998888888999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcc
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGAL  175 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~  175 (319)
                      ++.|..|+++|++..+.......+|...+..+....   .+..+|+..+.+.++..++..+...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l---~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL---LDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCcchHHHHHHHHHHHHHHHhe
Confidence            999999999999998888888888866555443322   2246899998887777666544433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.13  E-value=6.2e-10  Score=102.56  Aligned_cols=137  Identities=19%  Similarity=0.143  Sum_probs=106.6

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCC
Q 047275           39 TFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAP  118 (319)
Q Consensus        39 ~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p  118 (319)
                      ...+...++..++.++.|++.||+|||+.+..+..+..++..+....++.+.+++.+++.|++.++..+.....+.|..|
T Consensus       253 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~  332 (399)
T PRK05122        253 LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVP  332 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence            34455667778899999999999999999999888888888777778888889999999999999998888888899999


Q ss_pred             CCCCcchhhHHHHHHHHHHH-HHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 047275          119 PKHRGAFNIGFQVCTAIGVL-GANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD  179 (319)
Q Consensus       119 ~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~e  179 (319)
                      +++||+..+.......+|.. .+.+.+...    +.+||+..+.+.++..++..+..+.+++
T Consensus       333 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        333 PQNRGAALGAYSVFLDLSLGITGPLAGLVA----SWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988888777777754 334444433    2368999988777665555444444443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.12  E-value=2e-09  Score=95.90  Aligned_cols=196  Identities=11%  Similarity=0.073  Sum_probs=118.7

Q ss_pred             hhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHh-hccccC----------
Q 047275           83 GAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNY-GTQKIK----------  151 (319)
Q Consensus        83 ~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~-~~~~~~----------  151 (319)
                      +...+|..++++=|+.|.|.+...+....|+++..|++++++..+..+.++++|.++++++.. .+....          
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            345789999999999999999999999999999999999999888999999988776665543 221100          


Q ss_pred             --CCcchHHHHHhhHHHHHHHHHh--cccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccc
Q 047275          152 --GGWGWRISLSMAAAPASILTLG--ALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHP  227 (319)
Q Consensus       152 --~~~gWr~~f~~~~~~~~~~~~~--~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (319)
                        +.+.||+++.+.+....+..+.  +.-+||...      +++++..       .++.                   ..
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~~~~-------~~~~-------------------~~  132 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVARVS-------SGDT-------------------TQ  132 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------ccccccc-------cccc-------------------cc
Confidence              1157999988544433332222  223455321      1000000       0000                   00


Q ss_pred             hhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhc---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047275          228 FQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTI---KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGR  304 (319)
Q Consensus       228 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr  304 (319)
                      .+.+.   ++++.... .+..+.....-..+..|.+.++++.   +.+..... ..........++|.++++++.||+|+
T Consensus       133 ~~~~~---~~~~~~l~-~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~g~  207 (310)
T TIGR01272       133 KTSAF---QFTHLVLG-ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMISQ  207 (310)
T ss_pred             hhhHH---hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            00011   12333333 3333333333445556777777643   55544433 33445556677999999999999999


Q ss_pred             chHHHHhhHHh
Q 047275          305 KVLFLVGGILM  315 (319)
Q Consensus       305 r~~~~~g~~~~  315 (319)
                      |+++.++..++
T Consensus       208 ~~~l~~~~~l~  218 (310)
T TIGR01272       208 GRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHH
Confidence            88776655444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.10  E-value=6.7e-08  Score=90.86  Aligned_cols=248  Identities=22%  Similarity=0.216  Sum_probs=141.4

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHH-HHHHHhhh-c-hhhhHHHHHHHHHhhhhhhccchhhHHHH
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFL-AGSALGGA-A-FNVYMLILGRVLLGVGIGFSNQSVPLYLS  114 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~-~~~~~~~~-a-~~~~~li~~R~l~Gig~g~~~~~~~~~i~  114 (319)
                      ....+...+-..+-.++.|-++|+-|+||-++....... +.+.+..+ . .+++...+.-++.-++-+.......+++.
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP  152 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP  152 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            345566677777888999999999998876665444333 33444333 2 33444445555556677777888888999


Q ss_pred             hcCCCCCC--------------------------cchhhHHHHHHHHHHHHHHHHHhhc-ccc----CCCcchHHHHHhh
Q 047275          115 EMAPPKHR--------------------------GAFNIGFQVCTAIGVLGANLLNYGT-QKI----KGGWGWRISLSMA  163 (319)
Q Consensus       115 e~~p~~~R--------------------------g~~~~~~~~~~~~G~~~~~~~~~~~-~~~----~~~~gWr~~f~~~  163 (319)
                      |.++++++                          ++.++.-.....+|.++..++.... ...    .+.+.-|..+.+.
T Consensus       153 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~  232 (477)
T PF11700_consen  153 DLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIV  232 (477)
T ss_pred             hhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHH
Confidence            99998888                          7754333222223332222222221 111    1234568877776


Q ss_pred             HHHHHHHH-HhcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHH
Q 047275          164 AAPASILT-LGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVM  242 (319)
Q Consensus       164 ~~~~~~~~-~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  242 (319)
                      ++.-+++. ...+++||.|+....+.. ..-.....+++                       .+.++++   ++.|++ .
T Consensus       233 a~ww~vfsiP~~~~~~~~~~~~~~~~~-~~~~~~g~~~l-----------------------~~t~k~~---~~~~~~-~  284 (477)
T PF11700_consen  233 ALWWLVFSIPLFLWLPDRPGPRPLPSG-SSYLRFGFKRL-----------------------WRTFKEI---RKLRQL-F  284 (477)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcc-hhHHHHHHHHH-----------------------HHHHHHH---HhChHH-H
Confidence            66544433 345677887653111100 00011111111                       0111111   112333 3


Q ss_pred             HHHHHHHHhhhhhhHhHhhhHHHHH-hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHhhHH
Q 047275          243 AILIPFFQQLTGINVISFYAPVLFR-TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRK--VLFLVGGIL  314 (319)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~g~~~  314 (319)
                      .++++++....+++++......+.+ +.+++..+ .....++..+.+++|+++.+++.||+|.|  +.++++...
T Consensus       285 ~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~-l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  285 LFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ-LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL  358 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            4555555555667777666666655 67777554 44667777889999999999999999999  665444433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.09  E-value=1.7e-09  Score=101.59  Aligned_cols=132  Identities=15%  Similarity=0.256  Sum_probs=93.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHHHHHHHHhhhch-hhhHHHHHHHHHhhhhhhccchh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL-GRKASILVGGVAFLAGSALGGAAF-NVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~~~~~~~~~a~-~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      ++..+.+.+.+.+.....++++++|+++||+ |||++++++.++..++..+.+... +...+.++-.+.++|.|...+..
T Consensus        42 ls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~  121 (493)
T PRK15462         42 YDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNV  121 (493)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccH
Confidence            3456667777777788889999999999999 999999999999999887665432 22334444445556667777777


Q ss_pred             hHHHHhcCCCC--CCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHH
Q 047275          110 PLYLSEMAPPK--HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAP  166 (319)
Q Consensus       110 ~~~i~e~~p~~--~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~  166 (319)
                      .++++|.+|++  +|+...+.......+|...+..+...+   .+.+|||+.|.+.++.
T Consensus       122 ~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L---~~~~Gw~~~F~iaaig  177 (493)
T PRK15462        122 SCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA---QEEYSWAMGFGLAAVG  177 (493)
T ss_pred             HHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH---HhhhChHHHHHHHHHH
Confidence            88999999875  677666666666666655444433222   2246899999876543

>PRK11462 putative transporter; Provisional

Probab=99.08  E-value=1.5e-08  Score=95.41  Aligned_cols=149  Identities=11%  Similarity=0.052  Sum_probs=90.2

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhh----hchhHHHH-HHHHHHHHHHHHhhhchh------hhHHHHHHHHHhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA----LGRKASIL-VGGVAFLAGSALGGAAFN------VYMLILGRVLLGV  100 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr----~GRr~~~~-~~~~~~~~~~~~~~~a~~------~~~li~~R~l~Gi  100 (319)
                      +++...+.+....-+--.+..++.|+++||    +|||+.++ ++...+.++..+.-..++      ...+.+.-++..+
T Consensus        42 l~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~  121 (460)
T PRK11462         42 IPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL  121 (460)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence            344444444444444445777889999995    79986554 455666666555433332      3456666677788


Q ss_pred             hhhhccchhhHHHHhcCC-CCCCcchhhHHHHHHHHHHHHHHHHH-hhcccc---CCCcchHHHHHhhHHHHHHHH-Hhc
Q 047275          101 GIGFSNQSVPLYLSEMAP-PKHRGAFNIGFQVCTAIGVLGANLLN-YGTQKI---KGGWGWRISLSMAAAPASILT-LGA  174 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~-~~~~~~---~~~~gWr~~f~~~~~~~~~~~-~~~  174 (319)
                      +......+-.++..|.++ +++|+...+....+..+|..+..++. ......   ....+|+....+.+++.++.. +..
T Consensus       122 ~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        122 LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            888888888899999986 78899888777777777644333221 111111   112478876665555444333 233


Q ss_pred             ccccCC
Q 047275          175 LILPDT  180 (319)
Q Consensus       175 ~~l~es  180 (319)
                      ...+|.
T Consensus       202 ~~~kE~  207 (460)
T PRK11462        202 FTTKER  207 (460)
T ss_pred             hcceec
Confidence            334443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.07  E-value=1.4e-09  Score=98.67  Aligned_cols=133  Identities=14%  Similarity=0.035  Sum_probs=103.5

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhh--hHHHHHHHHHhhhhhhccchhhH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNV--YMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~--~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ....+.+.+...++..++.++.|++.||+|||+.+..+.....++.++..+.++.  ..+++..++.|++.|...+..+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  318 (377)
T TIGR00890       239 DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPS  318 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHH
Confidence            4455667777888889999999999999999999999988888887776666543  34557788999999988888889


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      ++.|.+|+++|++..+.......+|...+..+....   .+..||+..|.+.++..++
T Consensus       319 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l---~~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       319 LVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHA---LTEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH---HhhhchhhHHHHHHHHHHH
Confidence            999999999999988888888888766555443222   2346899998876665443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.03  E-value=2.7e-09  Score=98.39  Aligned_cols=131  Identities=17%  Similarity=0.121  Sum_probs=102.6

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCC
Q 047275           39 TFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAP  118 (319)
Q Consensus        39 ~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p  118 (319)
                      .+.+...++..++.++.|++.||+|||+.+..+.....++.+.....++.+.+++.+++.|++.|...+....++.|..|
T Consensus       262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  341 (408)
T PRK09874        262 MIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSS  341 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCC
Confidence            34445566778888899999999999999999888877777777777888889999999999999999999999999999


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275          119 PKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus       119 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      +++||+..+.......+|...+..+...+   .+.+||+..|.+.+...++..+
T Consensus       342 ~~~~g~~~~~~~~~~~~g~~~gp~~~G~l---~~~~g~~~~f~~~~~~~l~~~~  392 (408)
T PRK09874        342 NQIAGRIFSYNQSFRDIGNVTGPLMGAAI---SANYGFRAVFLVTAGVVLFNAV  392 (408)
T ss_pred             cccceeeehHHHHHHHHHHHhhHHHHHHH---HhhcchhHHHHHHHHHHHHHHH
Confidence            99999987777776777765555443322   2346899999877765555333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.03  E-value=4.4e-09  Score=95.79  Aligned_cols=142  Identities=16%  Similarity=0.195  Sum_probs=100.5

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      ++.+.+...........++.++.|++.||+|||+.+..+.+...+........++.+.+.+.+++.|++.|...+....+
T Consensus       233 ~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~  312 (375)
T TIGR00899       233 PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLY  312 (375)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555567788899999999999999888777655555555566788888899999999999988888889


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD  179 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~e  179 (319)
                      +.|..|++ |+...+.......+|...+..+ +...    +.+||+..|.+.++..++..+...+++|
T Consensus       313 ~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       313 FQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA----ERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHHHHHheecC
Confidence            99988764 5676777666666665554433 3322    2357999888877766555554444443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.02  E-value=8.1e-09  Score=97.46  Aligned_cols=143  Identities=17%  Similarity=0.114  Sum_probs=91.2

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhch--hh-h-HHHHHHHHHhhhhhhc-cchhhHHH
Q 047275           39 TFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAF--NV-Y-MLILGRVLLGVGIGFS-NQSVPLYL  113 (319)
Q Consensus        39 ~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~--~~-~-~li~~R~l~Gig~g~~-~~~~~~~i  113 (319)
                      .......+...++.++.+++.||+|||+.++.+..+..++.++.+...  +. . ....+-++.+.+.+.. .+....++
T Consensus       310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (479)
T PRK10077        310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLL  389 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHh
Confidence            333444556678999999999999999999999998888776654321  11 1 2223334444444432 35678899


Q ss_pred             HhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhc--cccCCCcchHHHHHhhHHHHHHHHH-hcccccCCh
Q 047275          114 SEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGT--QKIKGGWGWRISLSMAAAPASILTL-GALILPDTP  181 (319)
Q Consensus       114 ~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~--~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es~  181 (319)
                      +|.+|+++|+...+.......+|...+. +.+...  ....+.++|++.|.+.++.+++..+ .+++.||+.
T Consensus       390 ~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        390 SEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             HhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence            9999999999988877766666654432 222211  1223457888888776655444333 344567763

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.00  E-value=4.8e-08  Score=86.56  Aligned_cols=84  Identities=20%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ++..+.+.+-..-+...++.+.+.|.++||+|||+.-+.-.++..++.+. -..+++..|+++|++.|++.....+.-=+
T Consensus        66 ~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEs  144 (354)
T PF05631_consen   66 FSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFES  144 (354)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666677777888889999999999999999888888888864 45689999999999999999988887755


Q ss_pred             -HHHhc
Q 047275          112 -YLSEM  116 (319)
Q Consensus       112 -~i~e~  116 (319)
                       ++.|.
T Consensus       145 W~V~Eh  150 (354)
T PF05631_consen  145 WMVHEH  150 (354)
T ss_pred             HHHHHH
Confidence             56776

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.99  E-value=6.8e-09  Score=95.85  Aligned_cols=138  Identities=15%  Similarity=0.058  Sum_probs=102.3

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +....+.+.+...++..++.++.|++.||+|||+.+..+.+...++..+....++.+.+.+.-++.|++.++..+....+
T Consensus       253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  332 (406)
T PRK11551        253 SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYAL  332 (406)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            44566677777788899999999999999999999888777666666666667778888888899999988888888999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHHHHHh
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASILTLG  173 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~  173 (319)
                      +.|.+|+++||+..+.......+|...+..+ ++..+.   ..+|...+.......++..+.
T Consensus       333 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        333 APLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL---GRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             HHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc---CCchHHHHHHHHHHHHHHHHH
Confidence            9999999999998888877777776555544 333221   135666665544444333333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.98  E-value=2.4e-08  Score=92.09  Aligned_cols=236  Identities=17%  Similarity=0.141  Sum_probs=140.6

Q ss_pred             HHHHhhhhhhhhh----hchhH-HHHHHHHHHHHHHHHhhhch------hhhHHHHHHHHHhhhhhhccchhhHHHHhcC
Q 047275           49 LIASLFASKVTRA----LGRKA-SILVGGVAFLAGSALGGAAF------NVYMLILGRVLLGVGIGFSNQSVPLYLSEMA  117 (319)
Q Consensus        49 ~ig~~~~g~l~dr----~GRr~-~~~~~~~~~~~~~~~~~~a~------~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~  117 (319)
                      ++..++.|.+.||    +||+| -++++.+.+.+...++-.++      +....++.-++.|++-.....+-.++..|++
T Consensus        62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT  141 (467)
T COG2211          62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEIT  141 (467)
T ss_pred             HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhc
Confidence            4566778888884    88875 56667688888888776665      3456778889999999999999999999998


Q ss_pred             -CCCCCcchhhHHHHHHHHHHHHHH-HHHhhc---cccCCCcchHHHHHhhHHHHHHHH-HhcccccCChhhHHhccCCh
Q 047275          118 -PPKHRGAFNIGFQVCTAIGVLGAN-LLNYGT---QKIKGGWGWRISLSMAAAPASILT-LGALILPDTPNSIIQRSNGH  191 (319)
Q Consensus       118 -p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~---~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es~~~~~~~~~~~  191 (319)
                       +++||....+.-+.+..+|.++.. +.....   ..-+..+||+..-.+.++.+++.. ..++..+|.+......   +
T Consensus       142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~---~  218 (467)
T COG2211         142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPT---K  218 (467)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccC---c
Confidence             478899888777777777744332 222222   222225789887766555544433 3344455544311000   0


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhc-ccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcC
Q 047275          192 EKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQ-RKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIK  270 (319)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (319)
                                                    .+.+.++++.+. -.++|+.+..+. ..+...++.+.......++.+..-
T Consensus       219 ------------------------------~~~~~~~~~~~~~~~~Nrp~~~~l~-~~l~~~~~~~i~~s~~~yy~~y~l  267 (467)
T COG2211         219 ------------------------------TGVKLKLKDSFLLIFKNRPLLLLLL-MNLLLFIAFNIRGSIMVYYVTYVL  267 (467)
T ss_pred             ------------------------------ccccccHHHHHHHHHccchHHHHHH-HHHHHHHHHHHHhhhhheeEEEEc
Confidence                                          001222222221 122333333332 344444444444444444443322


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhhc
Q 047275          271 LSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVS  318 (319)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~~  318 (319)
                      ...+..........+...+++.++...+.+|+|+|++...+.++.+++
T Consensus       268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~  315 (467)
T COG2211         268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG  315 (467)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence            222333334455555666677899999999999999988887665543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.97  E-value=8.3e-11  Score=111.88  Aligned_cols=267  Identities=16%  Similarity=0.206  Sum_probs=3.0

Q ss_pred             ccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc----h------------------
Q 047275           29 YCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA----F------------------   86 (319)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a----~------------------   86 (319)
                      -+++++.+.+.+.+.+=++..+..++..++++|..|-+.+-.+.+++++++++.++=    .                  
T Consensus        32 RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~  111 (539)
T PF03137_consen   32 RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISS  111 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccc
Confidence            345678999999999999999999999999999777788888888888887765430    0                  


Q ss_pred             ----------------------------hhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHH
Q 047275           87 ----------------------------NVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVL  138 (319)
Q Consensus        87 ----------------------------~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~  138 (319)
                                                  -+..++++.++.|+|..+.++...+|+-|.+++++-+.+.++......+|..
T Consensus       112 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa  191 (539)
T PF03137_consen  112 NLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPA  191 (539)
T ss_dssp             ----------------------------------------SSS-------------------------------------
T ss_pred             ccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHH
Confidence                                        1357889999999999999999999999999999999888888777777766


Q ss_pred             HHHHHHhhc-----c--cc----------CCCc-c-hHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHHHHHH
Q 047275          139 GANLLNYGT-----Q--KI----------KGGW-G-WRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQ  199 (319)
Q Consensus       139 ~~~~~~~~~-----~--~~----------~~~~-g-Wr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~~  199 (319)
                      ++.+++...     +  ..          ++.| | |..-|++.+...++..+-.+..|++-+.....   +++.+...+
T Consensus       192 ~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~---~~~~~~~~~  268 (539)
T PF03137_consen  192 LGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSER---QEEKESSER  268 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccc---cchhhhhhc
Confidence            665554321     1  00          1112 2 66667777766655555555666654322100   010100000


Q ss_pred             HHcCChhHHHHHHHHHHHHhhccccccchhhhh---cccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHH-hcCCCchh
Q 047275          200 RVRGTADVQAELDDLIRASIVSRTVKHPFQTII---QRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFR-TIKLSEST  275 (319)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  275 (319)
                      +... .+. ++.    +.........+.++|++   ++..++++.+....+..........+..+.|=++| +++.+...
T Consensus       269 ~~~~-~~~-~~~----~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~  342 (539)
T PF03137_consen  269 KEED-SDK-DSF----KDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ  342 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhh-hhh-hcc----cccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            0000 000 000    00000001122333333   22234455555666666666667777788887765 56666544


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047275          276 SLLMSAVVTGGVSTIATITSMILTDKLGR  304 (319)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr  304 (319)
                      +..+...+.--...+|.+++|++++|+.-
T Consensus       343 A~~l~G~v~ip~~~~G~llGG~ivkk~kl  371 (539)
T PF03137_consen  343 ASLLTGIVSIPGAALGILLGGYIVKKFKL  371 (539)
T ss_dssp             -----------------------------
T ss_pred             HHHHHhhhhcchhheehheEEEEEEEecC
Confidence            44333333333456889999999999854

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK12382 putative transporter; Provisional

Probab=98.97  E-value=5.1e-09  Score=96.29  Aligned_cols=128  Identities=14%  Similarity=0.084  Sum_probs=101.6

Q ss_pred             HhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCC
Q 047275           40 FTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPP  119 (319)
Q Consensus        40 ~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~  119 (319)
                      ......++..++.++.|++.||+|||+.+..+..+..++..+....++.+.+.+.+++.|++.+...+.....+.|..|+
T Consensus       254 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  333 (392)
T PRK12382        254 TLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPS  333 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH
Confidence            33445566788999999999999999999999888888887777888888889999999999999888888889999999


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHH-HHhhccccCCCcchHHHHHhhHHHHHHHH
Q 047275          120 KHRGAFNIGFQVCTAIGVLGANL-LNYGTQKIKGGWGWRISLSMAAAPASILT  171 (319)
Q Consensus       120 ~~Rg~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  171 (319)
                      ++||+..+..+....+|...+.. .++..    ++.||+..|.+.+...++..
T Consensus       334 ~~~g~~~g~~~~~~~~g~~ig~~~~g~l~----~~~g~~~~~~~~~~~~~~~~  382 (392)
T PRK12382        334 QVRGTALGGYAAFQDIAYGVSGPLAGMLA----TSFGYPSVFLAGAISAVLGI  382 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCchHHHHHHHHHHHHHH
Confidence            99999888887777777554443 33332    23589999887766555433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.92  E-value=1.5e-08  Score=95.51  Aligned_cols=139  Identities=15%  Similarity=0.028  Sum_probs=92.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHH--hhhchhhhHHHHHHHHHhhhhhhccchh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL--GGAAFNVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~--~~~a~~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      ++..+.+...+...+++.+|.++.|+++||+|||+.+........++..+  .....+...+.+.+++.|+...+.....
T Consensus       291 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  370 (467)
T PRK09556        291 FSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLI  370 (467)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHH
Confidence            34455666777788899999999999999999998776654444333222  2234566677788999997655544444


Q ss_pred             hHHHHhcCCCCCCcchhhHHHHHHHH-H-HHHHHHHHhhccc-cC-------CCcchHHHHHhhHHHHHHH
Q 047275          110 PLYLSEMAPPKHRGAFNIGFQVCTAI-G-VLGANLLNYGTQK-IK-------GGWGWRISLSMAAAPASIL  170 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~~~~~~~~-G-~~~~~~~~~~~~~-~~-------~~~gWr~~f~~~~~~~~~~  170 (319)
                      .....|..|+++||...++......+ | .+...+.++..+. .+       ...+|+..|.+..+..++.
T Consensus       371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~  441 (467)
T PRK09556        371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGC  441 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHH
Confidence            46777999999999988877655554 4 3444455554441 00       0357999887665544443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.91  E-value=5e-09  Score=98.45  Aligned_cols=134  Identities=9%  Similarity=-0.043  Sum_probs=98.0

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhh--hchhHHHHH--HHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccch
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRA--LGRKASILV--GGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr--~GRr~~~~~--~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      +..+.+.+.+...++..++.++.|+++||  +++|+...+  +.+...++.++...+++++.+++.+++.|++.++..+.
T Consensus       274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~  353 (455)
T TIGR00892       274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL  353 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence            44556666677777788888999999997  334443333  33333444555667789999999999999999999999


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCc-chHHHHHhhHHHHHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGW-GWRISLSMAAAPASI  169 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~  169 (319)
                      ...++.|.+|+++||...+.......+|..++..+...+.   +.. +|++.|.+.++..++
T Consensus       354 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~---~~~g~~~~~f~~~~~~~li  412 (455)
T TIGR00892       354 LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV---DATKNYKYIFYASGSIVVS  412 (455)
T ss_pred             HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee---hhcCCcchHHHHhhHHHHH
Confidence            9999999999999999888888888888766655443222   223 598888876665444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.88  E-value=6.3e-09  Score=88.63  Aligned_cols=99  Identities=14%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHH---hhhchhhhHHHHHHHHHhhhhhhccchhhHHHH
Q 047275           39 TFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSAL---GGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLS  114 (319)
Q Consensus        39 ~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~---~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~  114 (319)
                      .+-+.+..=-.+-++++|++.|| ||-|..-++-.++..+|.++   .+...++|++..+||+-|+|.......-..|++
T Consensus        83 LlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav  162 (459)
T KOG4686|consen   83 LLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAV  162 (459)
T ss_pred             eeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeE
Confidence            33344444445677889999995 88886555544555556554   345689999999999999998888888889999


Q ss_pred             hcCCCCCCcchhhHHHHHHHHHH
Q 047275          115 EMAPPKHRGAFNIGFQVCTAIGV  137 (319)
Q Consensus       115 e~~p~~~Rg~~~~~~~~~~~~G~  137 (319)
                      .|+..++-+.+.++.....-+|.
T Consensus       163 ~wFKGKELn~vfGlqlSvAR~Gs  185 (459)
T KOG4686|consen  163 YWFKGKELNFVFGLQLSVARLGS  185 (459)
T ss_pred             EEecCccccchhhHHHHHHHhhc
Confidence            99999998877666655555553

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.88  E-value=3.2e-07  Score=82.72  Aligned_cols=248  Identities=18%  Similarity=0.165  Sum_probs=143.7

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHH-HHHhhhchh---hhHHHHHHHHHhhhhhhccchhh
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAG-SALGGAAFN---VYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~-~~~~~~a~~---~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      ...+...+...+...+-+++.|.++|+.|+||..+.-.....+. .....++++   ++..++.-.+..++.......-.
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            34445556666666778889999999999998666544444443 333344433   45566777888888888888889


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHH---HHHHHhh---cc------------ccCCCcchHHHHHhhHHHHHHHH-
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLG---ANLLNYG---TQ------------KIKGGWGWRISLSMAAAPASILT-  171 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~---~~~~~~~---~~------------~~~~~~gWr~~f~~~~~~~~~~~-  171 (319)
                      ++..+.+++++-++.++   .++..|.+.   ..+..++   ..            +..+...=|..+.+.++--+++. 
T Consensus       138 s~L~~~~~k~~~~riS~---lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i  214 (438)
T COG2270         138 SMLPRLTTKDNMGRISG---LGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL  214 (438)
T ss_pred             hHhhhhcCccccCcccc---cccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence            99999999988776532   223333221   1111100   00            00122445666655554433322 


Q ss_pred             HhcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHh
Q 047275          172 LGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQ  251 (319)
Q Consensus       172 ~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  251 (319)
                      -+.+..||.++-   .....+..+.             ..+++          +.+++++.    +++.+..++++.+.-
T Consensus       215 Pm~~~v~~~~~~---~~~~~~~l~~-------------g~k~L----------~~t~k~i~----~~~~i~~FLiA~~~~  264 (438)
T COG2270         215 PMILNVHDAEKI---SSPPPTALRN-------------GFKEL----------KSTFKEIR----GRKNLVLFLIARFFY  264 (438)
T ss_pred             HHHhcccccccc---cccchHHHHH-------------HHHHH----------HHHHHHHh----cccchHHHHHHHHHH
Confidence            233444444321   0000000111             11111          11222222    222344555666666


Q ss_pred             hhhhhHhHhhhHHHHH-hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          252 LTGINVISFYAPVLFR-TIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       252 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      ..+.+++......+-. ..+.++. +.++..+...+++++|+++.|+|.||+|-|++++++.+...
T Consensus       265 ~DGv~til~~~~~fg~~~~gls~~-~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~  329 (438)
T COG2270         265 IDGVNTILAMGGVFGAADLGLSST-ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS  329 (438)
T ss_pred             HhhHHHHHHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence            6777777666666655 5666644 45567778889999999999999999999988777766553

>PRK09952 shikimate transporter; Provisional

Probab=98.86  E-value=4.9e-08  Score=91.31  Aligned_cols=136  Identities=13%  Similarity=0.053  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh---c-hhhhHHHHHHHHHhhhhhhccchhhHHHHhcCC
Q 047275           43 SPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA---A-FNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAP  118 (319)
Q Consensus        43 ~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~---a-~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p  118 (319)
                      ...+.+.++.++.|+++||+|||++++.+.+...++......   . .+...+++.-++.|++.+...+....++.|.+|
T Consensus       294 ~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p  373 (438)
T PRK09952        294 LVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFG  373 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            334455678889999999999999988876655444332222   1 234455566777889988888888999999999


Q ss_pred             CCCCcchhhH-HHHHHHHHH-HHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCC
Q 047275          119 PKHRGAFNIG-FQVCTAIGV-LGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT  180 (319)
Q Consensus       119 ~~~Rg~~~~~-~~~~~~~G~-~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es  180 (319)
                      ++.|+...+. ..++..+|. +.+.+.++..+..  +.+|+..+....+..++..+..+.++|+
T Consensus       374 ~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        374 ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF--GGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            9999865444 233333432 3333444433321  2358887776666655555555555654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.84  E-value=4.1e-08  Score=90.03  Aligned_cols=134  Identities=13%  Similarity=0.066  Sum_probs=96.1

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +..+.+.+.+...++..++.++.|++.||+|||+++..+.....++.....   +........++.|++.++..+....+
T Consensus       233 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~p~~~~~  309 (381)
T PRK03633        233 SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGAAGFTLYPVAMAW  309 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            345666777778888899999999999999999999888877777655432   23345567889999888888999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      +.|..|+++++...........+|...+..+...+   .++.+|++.|.+.+...++..+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l---~~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        310 ACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAML---MQNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCccHHHHHHHHHHHHHHH
Confidence            99999988877666665566667665554433322   1235788888776655544433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.81  E-value=6e-07  Score=81.45  Aligned_cols=122  Identities=13%  Similarity=0.058  Sum_probs=88.8

Q ss_pred             hhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc------hhhh--HHHHHHHHHhhhhhhccch
Q 047275           37 LTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA------FNVY--MLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        37 ~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a------~~~~--~li~~R~l~Gig~g~~~~~  108 (319)
                      .-+..-++.+....-.+.+-|+.|++|-|...+++..+..+|..+-..+      +.++  ..+.+-.+.+.+---....
T Consensus        81 ~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~l  160 (480)
T KOG2563|consen   81 ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGL  160 (480)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcc
Confidence            3345555666777778888999999999999999999999999875544      2334  5557777777765555555


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcccc---CCCcchHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKI---KGGWGWRI  158 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~gWr~  158 (319)
                      -.-+..-|+|+++|..++.+...+..+|...+.+++-.+-..   .++..|..
T Consensus       161 PskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~  213 (480)
T KOG2563|consen  161 PSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLF  213 (480)
T ss_pred             ccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHH
Confidence            555667889999999998888888888887777765543221   23467865

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.80  E-value=9.5e-09  Score=97.47  Aligned_cols=130  Identities=12%  Similarity=-0.059  Sum_probs=91.1

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--hhhhHHHHHHHHHhhhhhhccchh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      ++..+.+.+.+...++..+|+++.|+++||+|||+++..+..+..+..++....  .+.+.+.+..++.|....+..+..
T Consensus       308 ~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (496)
T PRK03893        308 YDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLL  387 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhh
Confidence            345677788888889999999999999999999999888876666554433322  344455566666655554555677


Q ss_pred             hHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhH
Q 047275          110 PLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAA  164 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~  164 (319)
                      +.++.|.+|+++||...+.......+|..++..+...   +.+.+||+..+.+.+
T Consensus       388 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~---l~~~~g~~~~~~~~~  439 (496)
T PRK03893        388 PKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGAL---IAQRLDLGTALASLS  439 (496)
T ss_pred             HHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHH---HhccCChHHHHHHHH
Confidence            7889999999999998777766666665555444322   223467887765433

>PRK03545 putative arabinose transporter; Provisional

Probab=98.80  E-value=1.2e-07  Score=87.18  Aligned_cols=134  Identities=18%  Similarity=0.076  Sum_probs=94.9

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHH-HHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGS-ALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~-~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      +.++.+.+.+...+++.++.++.|++.||+|||+... +..+...+. .+....++.+.+++.-++.|++.+...+....
T Consensus       239 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  317 (390)
T PRK03545        239 SENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQV  317 (390)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHH
Confidence            4556667777777888999999999999999987544 444333333 33445677888889999999998888777888


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT  171 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  171 (319)
                      .+.|..| ++|++..+.......+|...+.++...+   .+++|++..|.+.+...++..
T Consensus       318 ~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~---~~~~g~~~~~~~~~~~~~~~~  373 (390)
T PRK03545        318 KVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQV---SLHLGLSSIGYVGAALALAAL  373 (390)
T ss_pred             HHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccChhHHHHHHHHHHHHHH
Confidence            8888876 5788877766666666655554443222   235789999887766555433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.79  E-value=5e-08  Score=90.52  Aligned_cols=146  Identities=14%  Similarity=0.012  Sum_probs=108.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+.+.+...++..++.++.+++.||.++++.+..+.+...++.++..+.++.+.+.++.++.|++.+...+....
T Consensus       256 ~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  335 (417)
T PRK10489        256 MGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYT  335 (417)
T ss_pred             CChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777778888899999999999999988888888888877777777777888888889999999999888788888


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCCh
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDTP  181 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~  181 (319)
                      ++.|..|++.||+..+.......+|..++..+ ++..    +.+|++..+.+.+....+ ..+....+||..
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        336 LLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG----AMMTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH----HHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999998888777676665544433 3332    235677777655544333 334445556553

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.77  E-value=6.7e-08  Score=90.45  Aligned_cols=144  Identities=10%  Similarity=-0.019  Sum_probs=95.0

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh-----ch------hhhHHHHHHHHHhhhh
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA-----AF------NVYMLILGRVLLGVGI  102 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~-----a~------~~~~li~~R~l~Gig~  102 (319)
                      ....+.......++..++.++.|+++||+|||+.+..+.++..++.++.++     .+      +...+....++.+...
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (481)
T TIGR00879       318 TDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFA  397 (481)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHH
Confidence            344456666777788899999999999999999999887777776655541     11      2333333344433333


Q ss_pred             hhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHH-HHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccCC
Q 047275          103 GFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANL-LNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPDT  180 (319)
Q Consensus       103 g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es  180 (319)
                      .+..+....++.|.+|+++|+...+.......+|...+.. .++..+    ..+|++.|.+.+..+++..+ ..++.||+
T Consensus       398 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~----~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       398 MGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE----SIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             ccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCccceehhHHHHHHHHHHHHheecccC
Confidence            3444666678899999999999888888877777655443 333322    25788887766655544333 34456665


Q ss_pred             h
Q 047275          181 P  181 (319)
Q Consensus       181 ~  181 (319)
                      .
T Consensus       474 ~  474 (481)
T TIGR00879       474 K  474 (481)
T ss_pred             C
Confidence            3

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=98.77  E-value=7e-08  Score=91.83  Aligned_cols=131  Identities=21%  Similarity=0.110  Sum_probs=97.1

Q ss_pred             HHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhh--hHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCc
Q 047275           46 IAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNV--YMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRG  123 (319)
Q Consensus        46 ~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~--~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg  123 (319)
                      +...++.++.+++.||+|||+.+..+.++..++.++..+.++.  +..++.-++.+++.++..+....+.+|.+|++.|+
T Consensus       366 ~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  445 (505)
T TIGR00898       366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN  445 (505)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh
Confidence            3446788889999999999999999988888887776666544  55666677888888888888999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 047275          124 AFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTP  181 (319)
Q Consensus       124 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~  181 (319)
                      ...+.......+|.+++..+.. ..    ..++..++.+.+...++..+...++||+.
T Consensus       446 ~~~g~~~~~~~ig~~i~p~i~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       446 LGVGVCSTMARVGSIISPFLVY-LG----EKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             hhHhHHHHHHHHHHHHHhHHHH-HH----HHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            8877777777777665554433 21    13455666665555555555566788874

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.76  E-value=7.8e-08  Score=87.73  Aligned_cols=129  Identities=15%  Similarity=0.045  Sum_probs=88.7

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHH--HHhhh--chhhhHHHHHHHHHhhhhhhccch
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGS--ALGGA--AFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~--~~~~~--a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      ++.+.+.......++..++.++.|+++||+|||+.+.....+..+..  ....+  ..+.+.+++..++.|++.+...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  332 (394)
T TIGR00883       253 SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGP  332 (394)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhh
Confidence            34556666777778889999999999999999998775554444333  12222  246777788899999999999999


Q ss_pred             hhHHHHhcCCCCCCcchhhH-HHHHHHHHHHHHH-HHHhhccccCCCcc-hHHHHHhhHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIG-FQVCTAIGVLGAN-LLNYGTQKIKGGWG-WRISLSMAAA  165 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~-~~~~~~~G~~~~~-~~~~~~~~~~~~~g-Wr~~f~~~~~  165 (319)
                      ...++.|.+|+++|++..+. ...+..+|...+. +.++..+.    .| |+..++...+
T Consensus       333 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~----~g~~~~~~~~~~~  388 (394)
T TIGR00883       333 MGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM----TGDWYAIGYYLAA  388 (394)
T ss_pred             HHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH----cCcchhHHHHHHH
Confidence            99999999999999987655 3444455543333 33333322    34 7766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.74  E-value=4e-07  Score=84.35  Aligned_cols=112  Identities=17%  Similarity=0.251  Sum_probs=87.7

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhch-hHHHHHHHHHHHHHHHHh-hhc---h-hhhHHHHHHHHHhhhhhhccc
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGR-KASILVGGVAFLAGSALG-GAA---F-NVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GR-r~~~~~~~~~~~~~~~~~-~~a---~-~~~~li~~R~l~Gig~g~~~~  107 (319)
                      .+-.+++.++.-+|.+++++.+|+...|.|. |+-++.+.+...++.++- .++   . .-+.++++|++.|+|.|... 
T Consensus        70 ~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-  148 (488)
T KOG2325|consen   70 ATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-  148 (488)
T ss_pred             cchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-
Confidence            4667888999999999999999999999996 677788888888888775 332   3 56789999999999977664 


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhh
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYG  146 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  146 (319)
                      ..-.|+++-+.+++|.++.+....+..+|.+.|..++..
T Consensus       149 ~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  149 VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            566899998888888877666666666666655554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.74  E-value=1.2e-07  Score=86.25  Aligned_cols=134  Identities=17%  Similarity=0.101  Sum_probs=86.0

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhH--HHH------HHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKA--SIL------VGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGF  104 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~--~~~------~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~  104 (319)
                      ++.+.+.+.+...++..++.++.|++.||+|||+  ...      .+.+...+........++.+..+..-.+.+.+.+ 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  327 (399)
T TIGR00893       249 SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-  327 (399)
T ss_pred             cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-
Confidence            3455666777778888999999999999999996  111      1111111112222223344444445555555544 


Q ss_pred             ccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcc-hHHHHHhhHHHHHHH
Q 047275          105 SNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWG-WRISLSMAAAPASIL  170 (319)
Q Consensus       105 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~  170 (319)
                      ..+....++.|..|+++||...+.......+|...+..+...+   .+..| |+..|.+.++..++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l---~~~~g~~~~~~~~~~~~~~~~  391 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI---AATTGSFAGALMVVAALALIG  391 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhh---ccCCCchhHHHHHHHHHHHHH
Confidence            7888889999999999999988888887777765554433222   23356 888877766554443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.73  E-value=1.2e-07  Score=82.51  Aligned_cols=131  Identities=29%  Similarity=0.345  Sum_probs=98.5

Q ss_pred             hhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchh--hhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           36 LLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFN--VYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        36 ~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~--~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      ..+...+...++..++.++.|+++||+|||+.+..+...+.++.++.++..+  .+.+++.|+++|++.|...+....++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  119 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL  119 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4667788888888899999999999999999888888776666677777766  89999999999999999999999999


Q ss_pred             HhcCCC-CCCcchhhHHHH-HHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHH
Q 047275          114 SEMAPP-KHRGAFNIGFQV-CTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPA  167 (319)
Q Consensus       114 ~e~~p~-~~Rg~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~  167 (319)
                      .|+.|+ ++|+...+.... ...+|.+.+...+...... ...+||+.|.......
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  174 (338)
T COG0477         120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHH
Confidence            999998 567765555554 3445544444332222211 3468999766655544

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.72  E-value=3.6e-08  Score=94.91  Aligned_cols=262  Identities=16%  Similarity=0.170  Sum_probs=167.0

Q ss_pred             ccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--------------------h--
Q 047275           29 YCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--------------------F--   86 (319)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--------------------~--   86 (319)
                      -+++++...+.+.+.+=+|..+...+..+.+.|.-|-+.+-++.++++++++++++=                    +  
T Consensus       126 RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~  205 (735)
T KOG3626|consen  126 RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSS  205 (735)
T ss_pred             hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcc
Confidence            344567778888999999999999999999999888889999999999998887641                    0  


Q ss_pred             -------------------------h----h-hHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHH
Q 047275           87 -------------------------N----V-YMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIG  136 (319)
Q Consensus        87 -------------------------~----~-~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G  136 (319)
                                               .    + ..++++-++.|+|..+.++...+|+-|.+.+++-+.+.++......+|
T Consensus       206 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lG  285 (735)
T KOG3626|consen  206 SLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILG  285 (735)
T ss_pred             ccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhh
Confidence                                     0    1 267899999999999999999999999999888888877777777777


Q ss_pred             HHHHHHHHhhc----ccc----------CCCc--chHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHHHHHHH
Q 047275          137 VLGANLLNYGT----QKI----------KGGW--GWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQR  200 (319)
Q Consensus       137 ~~~~~~~~~~~----~~~----------~~~~--gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~~~  200 (319)
                      ...+.+++...    .+.          ++.|  -|+.=|++.+...++..+-.++.|.+.+....+    .++ +..+.
T Consensus       286 PaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~----~~~-~~~~~  360 (735)
T KOG3626|consen  286 PAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR----KRA-RDLHV  360 (735)
T ss_pred             hHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc----chh-hhhcc
Confidence            66555544332    111          1112  266667777766666556666777765421110    000 00000


Q ss_pred             HcCChhHHHHHHHHHHHHhhccccccchhhhh---cccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHH-HhcCCCchhh
Q 047275          201 VRGTADVQAELDDLIRASIVSRTVKHPFQTII---QRKYRPQLVMAILIPFFQQLTGINVISFYAPVLF-RTIKLSESTS  276 (319)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  276 (319)
                      ...+.+          ......+..+.++|++   ++....++.+............+..+..|+|=++ ++++.+....
T Consensus       361 ~k~~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~A  430 (735)
T KOG3626|consen  361 LKTESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLA  430 (735)
T ss_pred             cccccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHH
Confidence            000000          0000001111222222   2222344555666666666677788888888666 5678876665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047275          277 LLMSAVVTGGVSTIATITSMILTDKLGRK  305 (319)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr  305 (319)
                      ..+...+.-....+|.+++|+++.|+.-+
T Consensus       431 n~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  431 NILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            54444444445668889999999998554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.72  E-value=2.4e-07  Score=85.03  Aligned_cols=112  Identities=12%  Similarity=0.118  Sum_probs=93.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+....+...+...++..++.++.+++.||+|+|+.+.++.+...+.....+++++.+.+++.+++.|++.|...+....
T Consensus       237 ~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~  316 (382)
T TIGR00902       237 ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMR  316 (382)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666677777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHH-HHHHHHHHHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQ-VCTAIGVLGANLLN  144 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~  144 (319)
                      ++.+. |+++|+...+... ....+|...+.+++
T Consensus       317 ~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~  349 (382)
T TIGR00902       317 YIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA  349 (382)
T ss_pred             HHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998 9999987766654 44556655554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.70  E-value=2.7e-07  Score=87.92  Aligned_cols=138  Identities=17%  Similarity=0.038  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchh----hhHHHHHHHHHhhhhhhccchhhHHHHhcCCC
Q 047275           44 PFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFN----VYMLILGRVLLGVGIGFSNQSVPLYLSEMAPP  119 (319)
Q Consensus        44 ~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~----~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~  119 (319)
                      ..++..+|.++.+++.||+|||+.++.+.....++..+.+...+    ...+...=+...++..+..+....+.+|.+|.
T Consensus       344 ~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~  423 (502)
T TIGR00887       344 ALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT  423 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence            34456678899999999999999998887776666554443221    11122111112222223345666788999999


Q ss_pred             CCCcchhhHHHHHHHHHHHHHH-HHHhhccccCC------CcchHHHHHhhHHHHHHHHHhcccccCCh
Q 047275          120 KHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKG------GWGWRISLSMAAAPASILTLGALILPDTP  181 (319)
Q Consensus       120 ~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~------~~gWr~~f~~~~~~~~~~~~~~~~l~es~  181 (319)
                      +.|++..+.......+|...+. +.++..+...+      +.++...|.+.+..+++..+..+++||+.
T Consensus       424 ~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence            9999987777766666644433 34443331110      23455555555544444444456779874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.70  E-value=7.3e-07  Score=81.49  Aligned_cols=247  Identities=19%  Similarity=0.167  Sum_probs=119.1

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHH--HHHHh-hhc----hhhh-HHHHHHHHHhhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLA--GSALG-GAA----FNVY-MLILGRVLLGVGIG  103 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~--~~~~~-~~a----~~~~-~li~~R~l~Gig~g  103 (319)
                      +++++.+.+.+...+..++.+++.|.++||.|.||-+++......+  +-+.. .+.    .|.+ ..+++=...|+...
T Consensus        40 Ls~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~  119 (412)
T PF01306_consen   40 LSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFN  119 (412)
T ss_dssp             --HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5678999999999999999999999999999977765544432222  22211 121    2221 12222223333344


Q ss_pred             hccchhhHHHHhcCCCC--CCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccC
Q 047275          104 FSNQSVPLYLSEMAPPK--HRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPD  179 (319)
Q Consensus       104 ~~~~~~~~~i~e~~p~~--~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~e  179 (319)
                      +..++.-+|+.+++..+  +=|+..+--++++.++...++ +.+.         +=+..|++....+++..+. ....|+
T Consensus       120 ~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i---------~p~~~fwi~s~~~~il~lll~~~~~~  190 (412)
T PF01306_consen  120 AGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI---------NPNIIFWIASAAAIILLLLLLLLKPD  190 (412)
T ss_dssp             THHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             ccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee---------CccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            44445544544443221  113333334455555543333 2221         1124455444443333322 333444


Q ss_pred             ChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhH
Q 047275          180 TPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVIS  259 (319)
Q Consensus       180 s~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (319)
                      .++....++.+.++.                             .+...+++.+..+.|+.+. +.+......+.++...
T Consensus       191 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~k~~~fw~-~~l~v~g~~~~Y~vfd  240 (412)
T PF01306_consen  191 VPPQAEVADALGAKK-----------------------------DKVSLKDVLSLFKMRNFWF-FVLFVIGVAAIYDVFD  240 (412)
T ss_dssp             SSSSS-SSTTSSS-----------------------------------HHHHHHHTTSHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             CchhhhhhcccccCC-----------------------------CCCcHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHH
Confidence            433221111100000                             0111222222223344433 2222222333344443


Q ss_pred             hhhHHHHHhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          260 FYAPVLFRTIKLSE---STSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       260 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      ...|.++...-.+.   +...++...+..+.+.+...+..++.+|+|.|+.++++++++.+
T Consensus       241 qqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~i  301 (412)
T PF01306_consen  241 QQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAI  301 (412)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence            33444444332222   22345566677788999999999999999999999888887753

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.70  E-value=1.4e-07  Score=86.69  Aligned_cols=112  Identities=16%  Similarity=0.035  Sum_probs=86.2

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHH-HhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSA-LGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~-~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      .+..+.+.+.+...+++.++.++.|++.||+|||+.+..+.....+... +.....+.+.+.+..++.|+..++..+..+
T Consensus       271 ~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (405)
T TIGR00891       271 LSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILP  350 (405)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHH
Confidence            3455667777788889999999999999999999998887765533322 233446677778888889988888888888


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL  143 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~  143 (319)
                      .++.|.+|+++||+..+.......+|...+..+
T Consensus       351 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~  383 (405)
T TIGR00891       351 KHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII  383 (405)
T ss_pred             HHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999998877766666665544433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.69  E-value=1.2e-06  Score=80.68  Aligned_cols=134  Identities=20%  Similarity=0.241  Sum_probs=97.8

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhc--hhhhHHHHHHHHHhhhhhhccchhh
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      ++....+.+.+.--.-..++++|+++|| +|+|+++..+.++..+|-++.+..  .+...+.++=.+.++|.|+.=+...
T Consensus        60 ~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS  139 (498)
T COG3104          60 ETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNIS  139 (498)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHH
Confidence            3333333333333334678889999998 899999999999999999888777  4788999999999999999999999


Q ss_pred             HHHHhcCCCCC--CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHH
Q 047275          111 LYLSEMAPPKH--RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASIL  170 (319)
Q Consensus       111 ~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~  170 (319)
                      .++.|..|+++  |....+++..+..+|.+.+.++..+..   +..||+.-|...++.-.+.
T Consensus       140 ~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~---~~~g~~~gF~~aavGm~~g  198 (498)
T COG3104         140 SLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA---INYGWHVGFGLAAVGMIIG  198 (498)
T ss_pred             HHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH---HhhCHHHHHHHHHHHHHHH
Confidence            99999998653  444455555666677665554433222   2368999998877654443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.66  E-value=7.9e-07  Score=82.84  Aligned_cols=104  Identities=20%  Similarity=0.256  Sum_probs=81.8

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-hhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-FNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      ...+.+.....++.+++.++.++++||+|||+++..+..+..++.....+. .+.+.+++..++.|++.+...+...+++
T Consensus       257 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  336 (437)
T TIGR00792       257 ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALV  336 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666778889999999999999999999999988888776665554 4667778889999999999999999999


Q ss_pred             HhcCC-------CCCCcchhhHHHHHHHHHHH
Q 047275          114 SEMAP-------PKHRGAFNIGFQVCTAIGVL  138 (319)
Q Consensus       114 ~e~~p-------~~~Rg~~~~~~~~~~~~G~~  138 (319)
                      +|..|       ++++|...+..+....+|..
T Consensus       337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~  368 (437)
T TIGR00792       337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA  368 (437)
T ss_pred             hhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence            98865       45567776666666666543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.66  E-value=6.3e-07  Score=83.72  Aligned_cols=96  Identities=16%  Similarity=0.044  Sum_probs=67.1

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHH----hhhchhhhHHHHHHHHHhhhhhhccch
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL----GGAAFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~----~~~a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      +..+.........++..++.++.|+++||+|||+.+..+..+..+....    ....+++..+.+.-++.|++.|...+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  351 (434)
T PRK15075        272 SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGA  351 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhh
Confidence            3344555666677788899999999999999999887765443322211    111234444555667777777777777


Q ss_pred             hhHHHHhcCCCCCCcchhhH
Q 047275          109 VPLYLSEMAPPKHRGAFNIG  128 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~  128 (319)
                      ...++.|..|++.|+...+.
T Consensus       352 ~~~~~~e~~p~~~rg~~~g~  371 (434)
T PRK15075        352 MVVALTEVMPAEVRTAGFSL  371 (434)
T ss_pred             HHHHHHHHCCCCccchheeH
Confidence            77889999999999986655

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.64  E-value=2e-07  Score=84.18  Aligned_cols=110  Identities=14%  Similarity=0.020  Sum_probs=92.9

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchh-hhHHHHHHHHHhhhhhhccchhhH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFN-VYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~-~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ++.+.+.+.....++.+++.++.+++.||+|||+.+..+.....++..+..+.++ .+.+.+..++.|++.+...+....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  324 (365)
T TIGR00900       245 GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGT  324 (365)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777888889999999999999999999998887777777777666664 888899999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANL  142 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~  142 (319)
                      ++.|..|+++||+..+.......+|...+..
T Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~  355 (365)
T TIGR00900       325 LLQRRVPAELLGRVFGAQFSLSHAAWPLGLI  355 (365)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888887777777555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.63  E-value=3.4e-06  Score=76.17  Aligned_cols=233  Identities=15%  Similarity=0.152  Sum_probs=124.6

Q ss_pred             HHHhhhhhhhhhhc-----hhHHHHHHH-HHHHHHHHHhhhc-----h-----------hhhHHHHHHHHHhhhhhhccc
Q 047275           50 IASLFASKVTRALG-----RKASILVGG-VAFLAGSALGGAA-----F-----------NVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        50 ig~~~~g~l~dr~G-----Rr~~~~~~~-~~~~~~~~~~~~a-----~-----------~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ...+.+|+.+|+.+     ||.-|++.- ..+..+..+..++     .           ........-.+.|+|.+...+
T Consensus        29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T  108 (403)
T PF03209_consen   29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGT  108 (403)
T ss_pred             HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHH
Confidence            35677999999999     886655544 4444433333221     2           123455777889999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHHHHH--hcccccCChhhH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASILTL--GALILPDTPNSI  184 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~~~~--~~~~l~es~~~~  184 (319)
                      +..++++|.+|+++|++..++......+|.+.+.+. +...++..   .=|....+.....+...+  ...+-.|.....
T Consensus       109 ~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s---~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~  185 (403)
T PF03209_consen  109 SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS---PERLIQVIQGVALIALLLNLIALWGQEPRRSR  185 (403)
T ss_pred             HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC---HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence            999999999999999999888888888887766544 33433221   234444444433332222  222222322110


Q ss_pred             HhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHH
Q 047275          185 IQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPV  264 (319)
Q Consensus       185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (319)
                      ..+..++           ++....                 +.++++..+..-++.......   .......--...=||
T Consensus       186 ~~~~~~~-----------~~~~f~-----------------~a~~~~~~~~~a~~f~~fl~l---~t~a~~~QD~iLEPy  234 (403)
T PF03209_consen  186 RAAAAER-----------PRPPFR-----------------EAWRQVWASPQARRFFVFLFL---GTLAFFMQDVILEPY  234 (403)
T ss_pred             cccCCCC-----------CCccHH-----------------HHHHHHHhCCChhHHHHHHHH---HHHHHHhhHHHcCCc
Confidence            0000000           000000                 011122222222322222211   111111111122333


Q ss_pred             HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCchHHHHhhHHhhh
Q 047275          265 LFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTD-KLGRKVLFLVGGILMFV  317 (319)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~g~~~~~~  317 (319)
                      ==+..+++..+++ ..+.+.+....+|....+++.. |.++++....|+..+.+
T Consensus       235 gg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~  287 (403)
T PF03209_consen  235 GGEVFGMSVGETT-RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGAL  287 (403)
T ss_pred             hhHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence            3455677766666 3455667777889988888888 56667776666655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.62  E-value=6e-07  Score=82.70  Aligned_cols=133  Identities=12%  Similarity=0.140  Sum_probs=97.6

Q ss_pred             hhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHh
Q 047275           36 LLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSE  115 (319)
Q Consensus        36 ~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e  115 (319)
                      +.+...+...+...++.++.|++.||+|||+.+.++..+..++..+...+++.+.+++.++++|++..........+..|
T Consensus       255 ~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  334 (396)
T TIGR00882       255 VFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITS  334 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555666677788999999999999999999998888877776778899999999999999987776667777888


Q ss_pred             cCCCCCCcchhhH-HHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275          116 MAPPKHRGAFNIG-FQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus       116 ~~p~~~Rg~~~~~-~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      ..|++.++...+. .+....+|...+. +.++..    +.+||+..|.+.++...+..+
T Consensus       335 ~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~----~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       335 QFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY----DSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             hCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH----HhcccHHHHHHHHHHHHHHHH
Confidence            8888888764433 4455566654443 333332    235899998887766555443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.62  E-value=1.4e-06  Score=81.25  Aligned_cols=144  Identities=17%  Similarity=0.120  Sum_probs=89.4

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc---hhhh------HHHHHHHHHhhhhh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA---FNVY------MLILGRVLLGVGIG  103 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a---~~~~------~li~~R~l~Gig~g  103 (319)
                      +.++..+.+....+-..+.++++..+.||+|||+.++.+..+..+..++....   .+..      ..+++.++..++.+
T Consensus       303 ~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~  382 (485)
T KOG0569|consen  303 TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFA  382 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence            34444555555555667888999999999999999999999888887765443   1111      22444444444444


Q ss_pred             hc-cchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCC
Q 047275          104 FS-NQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDT  180 (319)
Q Consensus       104 ~~-~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es  180 (319)
                      .. .|....+.+|.+|++.|+.+.+......-+........-..+...   +|= +.|++-.+++++ .++.++.+|||
T Consensus       383 ~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~---~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  383 IGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV---IGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             cCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            33 456677889999999999877666666555533322222112222   221 444444444444 44557789999

>PRK10504 putative transporter; Provisional

Probab=98.62  E-value=7.2e-07  Score=84.11  Aligned_cols=104  Identities=11%  Similarity=-0.007  Sum_probs=80.1

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc---hhhhHHHHHHHHHhhhhhhccchhh
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA---FNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a---~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      +...+.......++..++.++.+++.||+|||+++..+..+..++..+..+.   .+.+.+.+.-++.|++.+...+...
T Consensus       296 ~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  375 (471)
T PRK10504        296 PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMN  375 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555666777788899999999999999998888777776654442   3444455677888999999888999


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHH
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGV  137 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~  137 (319)
                      .++.+..|+++||...+..+....+|.
T Consensus       376 ~~~~~~~~~~~~g~~~~~~~~~~~~g~  402 (471)
T PRK10504        376 TLTLKDLPDNLASSGNSLLSMIMQLSM  402 (471)
T ss_pred             HHHHHcCCHHhccchHHHHHHHHHHHH
Confidence            999999999999988777776665553

>PRK03699 putative transporter; Provisional

Probab=98.59  E-value=5e-07  Score=83.23  Aligned_cols=136  Identities=13%  Similarity=0.003  Sum_probs=96.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ++..+.+.+.+...++..+|.++.|+++||+|||+.+........+...+....++...+.+.-++.|++.++..+....
T Consensus       238 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~  317 (394)
T PRK03699        238 MSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIIT  317 (394)
T ss_pred             CChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777888889999999999999999999988877766666555556677777888889999999988888888


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      +..|..|.+ ++...+.......+|..++. +.++..+    ..||+..++...+...+...
T Consensus       318 ~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~----~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        318 LGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVA----HFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHH----HhCchhhhhhhHHHHHHHHH
Confidence            888877644 45444444444555544443 3333332    35788887766655444433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.59  E-value=1e-06  Score=82.97  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=93.4

Q ss_pred             cccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchh--HHHHHHHHHHHHHHHHhhh--------chhhhHHHHHHHHHh
Q 047275           30 CKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRK--ASILVGGVAFLAGSALGGA--------AFNVYMLILGRVLLG   99 (319)
Q Consensus        30 ~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr--~~~~~~~~~~~~~~~~~~~--------a~~~~~li~~R~l~G   99 (319)
                      .+++..+...+.-...+.+.+|++++|++.||+|.|  ++++.+++.+.+..+...+        ..+.+.+.+.=++.|
T Consensus       312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G  391 (477)
T PF11700_consen  312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG  391 (477)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence            335566666777777888899999999999999999  8999998888666555544        567788888999999


Q ss_pred             hhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 047275          100 VGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       100 ig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  144 (319)
                      +..|+.++..-++.+|..|+++.+.+.+++.+..-....+++++-
T Consensus       392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~  436 (477)
T PF11700_consen  392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF  436 (477)
T ss_pred             HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887777766655555554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.59  E-value=4.7e-07  Score=94.57  Aligned_cols=131  Identities=15%  Similarity=0.065  Sum_probs=102.9

Q ss_pred             Ccc-hhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           33 NSQ-LLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        33 ~~~-~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      +.. ..+.+.+...++.++|+++.|+++||+++|+.+.++.++..++.++..+..+.+.++++-++.|++.++..+...+
T Consensus       266 s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  345 (1146)
T PRK08633        266 DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNA  345 (1146)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            344 6677778888899999999999999999999998888888888777777788888999999999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAA  165 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~  165 (319)
                      ++.|.+|++.||+..+..+....+|.+++..++.....  ..++|...+.+.+.
T Consensus       346 ~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~--~~~~~~~~~~~~~~  397 (1146)
T PRK08633        346 LIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG--LGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHH
Confidence            99999999999998888777777776544444433221  12456555554443

>TIGR00897 2A0118 polyol permease family

Probab=98.58  E-value=9.6e-07  Score=81.62  Aligned_cols=135  Identities=15%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHH-HHHHHHHHHHHHhh-----hchhhhHHHHHHHHHhhhhhhcc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASIL-VGGVAFLAGSALGG-----AAFNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~-~~~~~~~~~~~~~~-----~a~~~~~li~~R~l~Gig~g~~~  106 (319)
                      +..+.+...+...+++.+++++.|+++||+|||+.+. .+.+...++.....     ...+.+.+++..++.|++.++..
T Consensus       255 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  334 (402)
T TIGR00897       255 STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYV  334 (402)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Confidence            3445556666777889999999999999999998764 33333333322222     13466777889999999988865


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHHHHHh
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASILTLG  173 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~  173 (319)
                      +. ...+.|.. |++||+..+..+....+|...++.+ +...    +.+||+..+.+.+...++..+.
T Consensus       335 ~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~----~~~g~~~~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       335 PL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFI----GFFGAIGVVWIFAALYVVSAFL  396 (402)
T ss_pred             HH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchHHHHHHHHHHHHHHHHH
Confidence            54 45667764 5689998888888787776555443 3333    2367888887766555444333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.58  E-value=7.9e-07  Score=81.97  Aligned_cols=146  Identities=14%  Similarity=0.044  Sum_probs=93.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh-chhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA-AFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~-a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      .+....+...+...+++.+|.++.|++.||+|||+.+..+..+..++..+... ..+...+.  -++.|++.|...+...
T Consensus       237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~  314 (393)
T PRK09705        237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCL  314 (393)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHH
Confidence            34566677778888899999999999999999999988887776666554332 22222222  2467888888888777


Q ss_pred             HHHHhcCC-CCCCcchhhHHHHHHHHHHHHH-HHHHhhccccCCCcchHHHHHhhHHHHHHHH-HhcccccCChh
Q 047275          111 LYLSEMAP-PKHRGAFNIGFQVCTAIGVLGA-NLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGALILPDTPN  182 (319)
Q Consensus       111 ~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es~~  182 (319)
                      ....|..+ +++||+..+..+....++...+ .+.++..+.. +  +|...|.+..+.+++.. ....+.||++.
T Consensus       315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-G--NYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            77777775 5678876665555554443333 3334433321 1  37777766555544433 33556677653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.56  E-value=1.3e-06  Score=80.13  Aligned_cols=108  Identities=11%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +.++.+.+.+...++..++.++.|++.||+|+|+.+..+.+...++.++.+.+++.+.+++..++.|++.+...+....+
T Consensus       238 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  317 (382)
T PRK11128        238 SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRY  317 (382)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666777888999999999999999999999888888777888999999999999999999999999989


Q ss_pred             HHhcCCCCCCcchhhHHH-HHHHHHHHHHH
Q 047275          113 LSEMAPPKHRGAFNIGFQ-VCTAIGVLGAN  141 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~-~~~~~G~~~~~  141 (319)
                      +.+. +++++++..+... ....+|..++.
T Consensus       318 ~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~  346 (382)
T PRK11128        318 IAAR-PGSEVIRLQALYSALAMGGSIAIMT  346 (382)
T ss_pred             HHHC-CHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8886 5666677655554 43445533333

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.56  E-value=2.2e-06  Score=77.99  Aligned_cols=263  Identities=15%  Similarity=0.086  Sum_probs=147.1

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCC
Q 047275           39 TFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAP  118 (319)
Q Consensus        39 ~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p  118 (319)
                      .+....+-..+..-++...+.|..|.|+++++..+...+...+.-+.++...+-+.-+.-|++.+... +-.+|+--..|
T Consensus        45 ~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v~  123 (412)
T PF01770_consen   45 EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEV-AYYSYIYSVVD  123 (412)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHH-HHHHHheeecC
Confidence            45555555666677778889999999999999999999999998899999999999999999988864 45567777777


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHHHHH
Q 047275          119 PKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKML  198 (319)
Q Consensus       119 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~  198 (319)
                      +++=-++.+..-....+|...+.+++-.+-. .++.+.+.+..+......+.++..+++|..++...-+++..++..  .
T Consensus       124 ~~~yq~vts~~raa~l~g~~~s~~lgQllvs-~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~--~  200 (412)
T PF01770_consen  124 KEHYQKVTSYTRAATLVGRFISSLLGQLLVS-FGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD--A  200 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc--c
Confidence            7665455544455555555555444433221 123456777666655545555566778776654432222111000  0


Q ss_pred             HHHcCCh--hHHHHHHHH-HHHHhhccccccchhhhh---cccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCCC
Q 047275          199 QRVRGTA--DVQAELDDL-IRASIVSRTVKHPFQTII---QRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLS  272 (319)
Q Consensus       199 ~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (319)
                      ++...+.  +.+++.++. ...+......+..++.+.   ++-+.++.+....+.+....++++.+..|...+.++...+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~  280 (412)
T PF01770_consen  201 NESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPS  280 (412)
T ss_pred             ccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCC
Confidence            0000000  000000000 000000000111111221   2223344455566666677888899989988888877322


Q ss_pred             chhhH--HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047275          273 ESTSL--LMSAVVTGGVSTIATITSMILTDKLGRK  305 (319)
Q Consensus       273 ~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~Grr  305 (319)
                      .+...  +..-....+.+.++.+..|++-.++.+.
T Consensus       281 ~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~  315 (412)
T PF01770_consen  281 DNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW  315 (412)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH
Confidence            22221  1222233344455666677765555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.54  E-value=9.1e-07  Score=82.19  Aligned_cols=110  Identities=12%  Similarity=-0.023  Sum_probs=71.8

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHhhhhhhccchhh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAF--NVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~--~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      ++...+...+...+++.++.++.|++.||+|||+.+..+.+...+........+  +...+...-+..+.+..+..+..+
T Consensus       264 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (426)
T PRK12307        264 DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVP  343 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHH
Confidence            344555566667778899999999999999999998888776655544333222  222222333333333333445667


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHHHH
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGANL  142 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~  142 (319)
                      .++.|.+|+++||+..+.......+|...++.
T Consensus       344 ~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~  375 (426)
T PRK12307        344 KFLYDYFPLEVRGLGTGLIYNLAATSGTFNSM  375 (426)
T ss_pred             HHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHH
Confidence            78899999999999877766555555544443

>TIGR00895 2A0115 benzoate transport

Probab=98.54  E-value=4.9e-07  Score=82.61  Aligned_cols=111  Identities=15%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +..+.+.+.+...++..++.++.|++.||+|||+......+.......+.....+.+.+.+..++.|++.++..+....+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  362 (398)
T TIGR00895       283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYAL  362 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777788888999999999999999999955544443333333333335677778889999999999999999999


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANLL  143 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~  143 (319)
                      +.|.+|+++||...+.......+|..++..+
T Consensus       363 ~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  393 (398)
T TIGR00895       363 MALFYPTAIRATGVGWAIGIGRLGAIIGPIL  393 (398)
T ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988777776666665555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.53  E-value=1.7e-06  Score=81.32  Aligned_cols=133  Identities=14%  Similarity=0.072  Sum_probs=79.0

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhh--chhHHHH-HHHHHHHHHHHHh--hhchhhhHHHHHHHHHhhhhhhccch
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRAL--GRKASIL-VGGVAFLAGSALG--GAAFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~--GRr~~~~-~~~~~~~~~~~~~--~~a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      ..+.+.......++..++.++.|+++||+  |||+... ....+..++....  ....+...+++.-++.|.+..+....
T Consensus       288 ~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  367 (452)
T PRK11273        288 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVML  367 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHH
Confidence            34555556666677888999999999999  5554322 2222222222221  12234455556666666654443334


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHH-HHHH-HHHHhhccccCCCcchHHHHHhhHHHHHHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIG-VLGA-NLLNYGTQKIKGGWGWRISLSMAAAPASIL  170 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G-~~~~-~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~  170 (319)
                      ...++.|.+|+++||...+.......+| .+.+ .+.++..    +.+||+..|.+.+..+++.
T Consensus       368 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~----~~~g~~~~f~~~~~~~~~~  427 (452)
T PRK11273        368 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV----DFFGWDGGFMVMIGGSILA  427 (452)
T ss_pred             HHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH----HHhcchHHHHHHHHHHHHH
Confidence            4456789999999999888776655554 3333 3334433    3367998887666554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.52  E-value=1e-06  Score=83.33  Aligned_cols=141  Identities=11%  Similarity=0.006  Sum_probs=85.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhH-------HHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKA-------SILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGF  104 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~-------~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~  104 (319)
                      ++....+.+.+...++..+|.++.|+++||+|||+       .......+..+..++.....+.+..++.-++.|++.++
T Consensus       285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~  364 (476)
T PLN00028        285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQA  364 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            34456667777788889999999999999999762       22222222222223334455555556666677777666


Q ss_pred             ccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 047275          105 SNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALIL  177 (319)
Q Consensus       105 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l  177 (319)
                      ..+....++.|.. +++||...+....+..+|...+..+   .. ..+..+|+..|.+.++..++..+..+++
T Consensus       365 ~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l---~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        365 ACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLL---FF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHH---HH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            6666666666754 4688887766655555554433322   22 2234579988887766655544444444

>TIGR00901 2A0125 AmpG-related permease

Probab=98.51  E-value=5.9e-07  Score=81.43  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=78.2

Q ss_pred             CcchhhHHhHH-HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-----------hhhhHHHHHHHHHhh
Q 047275           33 NSQLLTTFTSS-PFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-----------FNVYMLILGRVLLGV  100 (319)
Q Consensus        33 ~~~~~~~~~~~-~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-----------~~~~~li~~R~l~Gi  100 (319)
                      ++++.+.+... ..++..+|.+++|++.||+|||+.+..+.++..++..+..+.           ++.+.++.+.++.|+
T Consensus       242 ~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  321 (356)
T TIGR00901       242 SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV  321 (356)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence            34455544443 335678999999999999999999888888777665544332           355778889999999


Q ss_pred             hhhhccchhhHHHHhcCCCCCCcchhhHHHHH
Q 047275          101 GIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVC  132 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~  132 (319)
                      +.+...+...+++.|.+|+++||+..++.+..
T Consensus       322 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  353 (356)
T TIGR00901       322 TGGLGTVAFVAFLSKLSNPKFGATQMALLSSL  353 (356)
T ss_pred             HhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            99999999999999999999999877666543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.50  E-value=2.3e-06  Score=79.94  Aligned_cols=97  Identities=11%  Similarity=0.010  Sum_probs=59.5

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh--h--chhhhHHHHHHHHHhhhhhhccchh
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG--A--AFNVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~--~--a~~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      ..+.+...+...++..++.++.|+++||+|||+.+........+......  .  ..+....+..=.+.+...+...+..
T Consensus       278 ~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
T PRK10406        278 ANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSIS  357 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666667778888999999999999987776554333322111  1  1222222221122333344444556


Q ss_pred             hHHHHhcCCCCCCcchhhHHH
Q 047275          110 PLYLSEMAPPKHRGAFNIGFQ  130 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~~~  130 (319)
                      ..+.+|++|++.|+...+...
T Consensus       358 ~~~~~e~fp~~~r~t~~g~~~  378 (432)
T PRK10406        358 GILKAEMFPAQVRALGVGLSY  378 (432)
T ss_pred             HHHHHHHCCCCccchhhhHHH
Confidence            778899999999998766554

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.49  E-value=2.4e-06  Score=81.12  Aligned_cols=144  Identities=13%  Similarity=0.134  Sum_probs=96.1

Q ss_pred             cCcchhhHHh-HHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHH---hhhc-hhhhHHHHHHHHHhhhhhhcc
Q 047275           32 FNSQLLTTFT-SSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL---GGAA-FNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        32 ~~~~~~~~~~-~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~---~~~a-~~~~~li~~R~l~Gig~g~~~  106 (319)
                      ++.++.+... ....++..+|.++.|++.||+|||+.+..+.++..+..++   .+.. ++...+.+.=+++.+..|...
T Consensus       255 ~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~  334 (491)
T PRK11010        255 FDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGT  334 (491)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            4556666665 4556788999999999999999998877665554444322   1222 355555566677666666666


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHHHHH-HHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVL-GANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD  179 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~e  179 (319)
                      +....+..|..|++.++...+..+....+|.. .+.+.++..+    .+||+..|.+..+.++...+....+++
T Consensus       335 ~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        335 AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----AHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67778888999999888876666666666643 4444444433    358999888777666655444444444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.47  E-value=4.3e-06  Score=77.28  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=82.3

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-----FNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-----~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++.+.+.......++..+|.++.|++.||+|||+.+..+..+..++..+....     .+.+.+++.-++.|+|.+...+
T Consensus       249 ~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~  328 (406)
T PRK15402        249 SSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANA  328 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhh
Confidence            34455555555667788999999999999999999988888777766655443     3566778899999999998877


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL  143 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~  143 (319)
                      ....... ..++++||+..+..+....+|..++..+
T Consensus       329 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~  363 (406)
T PRK15402        329 GLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIEL  363 (406)
T ss_pred             hHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHH
Confidence            7666553 3456899998888888777776555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.46  E-value=1.5e-06  Score=82.66  Aligned_cols=135  Identities=16%  Similarity=0.155  Sum_probs=108.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++...+.+.+...+|+++|+++.+++.+|+++++.+..+.+.+.++.+..+++++.+..++.-++.|++.....+...+
T Consensus       251 ~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t  330 (524)
T PF05977_consen  251 GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNT  330 (524)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788999999999999999999999999999999999999999999999999999999999999999999989899


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      .+-+..|++.||+..++.......+..++.++...+   .+.+|-+..+.+.++..++
T Consensus       331 ~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l---a~~~g~~~al~~a~~~lll  385 (524)
T PF05977_consen  331 LVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL---ADHFGVRTALLIAGAALLL  385 (524)
T ss_pred             HHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHH
Confidence            999999999999988777766655544444332221   1235677777666654333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.44  E-value=2e-06  Score=79.57  Aligned_cols=109  Identities=11%  Similarity=0.013  Sum_probs=82.1

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhh-hhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTR-ALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~d-r~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      .+.+...+...++...+....+++.| |++.++.+..+.....++..+.+.+++++.+.+..++.|++.+...+...+++
T Consensus       243 ~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~  322 (400)
T PRK11646        243 SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLS  322 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            44455545555555545555565555 56767777788877888877777888888888888999999998889999999


Q ss_pred             HhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 047275          114 SEMAPPKHRGAFNIGFQVCTAIGVLGANLL  143 (319)
Q Consensus       114 ~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~  143 (319)
                      .|.+|+++||+..+..+....+|...+..+
T Consensus       323 ~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l  352 (400)
T PRK11646        323 ASLADARARGSYMGFSRLGLALGGAIGYIG  352 (400)
T ss_pred             HhcCCcccchhhhhHHHHHHHHHHHhcccc
Confidence            999999999998888888877776555433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.43  E-value=5.1e-06  Score=75.81  Aligned_cols=126  Identities=18%  Similarity=0.273  Sum_probs=89.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHHHHHhhhhhhcc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-----FNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-----~~~~~li~~R~l~Gig~g~~~  106 (319)
                      .++.+.+.+.+...++..++.++.|++.||+|||+.+..+..+..++..+....     .+...+++.-++.|++.+...
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  318 (385)
T TIGR00710       239 VSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMIS  318 (385)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            345667777777888889999999999999999999988877777766554432     234556667888999999999


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHH-HHHHHHHHHHHhhccccCCCcchHHHHHh
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCT-AIGVLGANLLNYGTQKIKGGWGWRISLSM  162 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~gWr~~f~~  162 (319)
                      +....+..|..| ++||...+..+... ..|.+.+.+.+. .   .+..+|...+..
T Consensus       319 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~-~---~~~~~~~~~~~~  370 (385)
T TIGR00710       319 SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL-I---HGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh-c---cccChHHHHHHH
Confidence            999889888876 67887766655443 345555555552 1   222356555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09848 glucuronide transporter; Provisional

Probab=98.42  E-value=5.3e-06  Score=77.80  Aligned_cols=96  Identities=11%  Similarity=0.131  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--hhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCC-
Q 047275           44 PFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK-  120 (319)
Q Consensus        44 ~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~-  120 (319)
                      ..++.+++.++.+++.||+|+|+++..+..+..++..+..+.  .+++.+++.-++.|+|.+...+...++.+|..|.+ 
T Consensus       273 ~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~  352 (448)
T PRK09848        273 NLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE  352 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            356677899999999999999999999998888877665554  36677788889999999999999999999988754 


Q ss_pred             ------CCcchhhHHHHHHHHHHHH
Q 047275          121 ------HRGAFNIGFQVCTAIGVLG  139 (319)
Q Consensus       121 ------~Rg~~~~~~~~~~~~G~~~  139 (319)
                            ++|.+.+..+...-+|..+
T Consensus       353 ~~~g~r~~G~~~~~~~~~~klg~ai  377 (448)
T PRK09848        353 YLTGVRIEGLTYSLFSFTRKCGQAI  377 (448)
T ss_pred             HhhCccchhHHHHHHHHHHHHHHHH
Confidence                  3476666666666666433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.41  E-value=5.2e-06  Score=71.09  Aligned_cols=145  Identities=16%  Similarity=0.140  Sum_probs=103.0

Q ss_pred             cccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-------hhhhHHHHHHHHHhhhh
Q 047275           30 CKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-------FNVYMLILGRVLLGVGI  102 (319)
Q Consensus        30 ~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-------~~~~~li~~R~l~Gig~  102 (319)
                      ++.+.++.+.+....-+|..+| ++.|.+.|++|.+.+++++.+...+|..+.-++       ..+|.+++.-++.|.+.
T Consensus        32 l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~  110 (250)
T PF06813_consen   32 LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSS  110 (250)
T ss_pred             hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccH
Confidence            4456788888888889998775 889999999999999999999999987764432       47789999999999987


Q ss_pred             hhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHH-HHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCC
Q 047275          103 GFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGV-LGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT  180 (319)
Q Consensus       103 g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es  180 (319)
                      +...........+.+| ++||.+.++.-...+++. +...+-....++    -.-+..+.+...+.++.++..+++++.
T Consensus       111 ~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~----~~~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  111 CWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD----DPSSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             HHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence            7766666666667787 689998888777777763 333333333332    234566666666665554444444433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.40  E-value=2.8e-06  Score=79.33  Aligned_cols=130  Identities=19%  Similarity=0.197  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhh--ccchhhHHHHhcCCCCC
Q 047275           44 PFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGF--SNQSVPLYLSEMAPPKH  121 (319)
Q Consensus        44 ~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~--~~~~~~~~i~e~~p~~~  121 (319)
                      ..+..++.+...|.++||+|||..+.+..+...+...+..+.. +|.++    +.|+..+.  ..+...+|++|.+..++
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~  145 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE  145 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence            3556678899999999999999999999998888877766555 44433    55554433  34555678999999999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHH-hhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCChh
Q 047275          122 RGAFNIGFQVCTAIGVLGANLLN-YGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDTPN  182 (319)
Q Consensus       122 Rg~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~~  182 (319)
                      |....++....+..+...++..+ +....    .|.-..|.+.....++ ....+.++||+-.
T Consensus       146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~----~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  146 RSSSIGLLSGTFGAGLVIGPALGGYLVKF----LGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            98776666665555544444333 22211    2444566666655544 4455677898854

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.37  E-value=2.5e-06  Score=79.74  Aligned_cols=137  Identities=16%  Similarity=0.054  Sum_probs=81.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh--ch-hHHHHHHHH--HHHHHHHHhhhchhhhHHHHHHHHHhhhhhhcc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL--GR-KASILVGGV--AFLAGSALGGAAFNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~--GR-r~~~~~~~~--~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~  106 (319)
                      ++....+...+...+++.+|.++.|+++||+  ++ |.......+  ......+......+...+...-+..|++..+..
T Consensus       276 ~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  355 (434)
T PRK11663        276 VDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQ  355 (434)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHH
Confidence            3445566677778889999999999999999  33 332222111  111111111112233344445555555433333


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHH-HHHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGA-NLLNYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      .....+++|..|+++||...+..+....+|...+ .+.++..    +++||+..|.+.++..++..+
T Consensus       356 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~----~~~g~~~~f~~~~~~~~~~~~  418 (434)
T PRK11663        356 MLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL----EIWHWTGFFVVISIAAGISAL  418 (434)
T ss_pred             HHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH----HhcccHHHHHHHHHHHHHHHH
Confidence            3345677899999999998888877777776544 3444433    346899988876666554433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.36  E-value=3.1e-06  Score=79.97  Aligned_cols=110  Identities=11%  Similarity=0.096  Sum_probs=88.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh----chhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA----AFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~----a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      .++.+.+.......++..++.++.|++.||+|||+.+..+..+..++..+...    ..+++.+...-++.|+|.|...+
T Consensus       288 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  367 (485)
T TIGR00711       288 YTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFM  367 (485)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777888999999999999999999999988888877766542    23556777788999999999888


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGAN  141 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~  141 (319)
                      .....+.|..|+++||...+.......+|..++.
T Consensus       368 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~  401 (485)
T TIGR00711       368 PLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGT  401 (485)
T ss_pred             HHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence            8888888889999999988888777777755443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.35  E-value=5.8e-06  Score=76.23  Aligned_cols=131  Identities=11%  Similarity=-0.098  Sum_probs=92.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .++.+.+.+.....+|..+|+++.+++.||+++|+++..+.. ..+...+.++.++++...+.-++.|++.+...++..+
T Consensus       238 ~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~  316 (393)
T PRK11195        238 ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNA  316 (393)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            456677788888889999999999999999999988877753 3444444455677777788888999999998888888


Q ss_pred             HHHhcCCCCC-CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHH
Q 047275          112 YLSEMAPPKH-RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAA  165 (319)
Q Consensus       112 ~i~e~~p~~~-Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~  165 (319)
                      .+.|..|++. +|+..+..+....+|...+..+.......  ...++..|...+.
T Consensus       317 ~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  369 (393)
T PRK11195        317 LLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--GVPVVAVIVGFGL  369 (393)
T ss_pred             HHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence            8888766654 68877777777777755554443332211  2356665544443

>PRK10054 putative transporter; Provisional

Probab=98.34  E-value=4.4e-06  Score=77.09  Aligned_cols=112  Identities=11%  Similarity=0.043  Sum_probs=79.4

Q ss_pred             HHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-hhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhh
Q 047275           49 LIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-FNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNI  127 (319)
Q Consensus        49 ~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~  127 (319)
                      .....+.|++.||++||+.+..+..+..++.....++ .+.+.+++..++.|+|.+...+....++.|..|++.|+.+.+
T Consensus       258 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~  337 (395)
T PRK10054        258 VSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFS  337 (395)
T ss_pred             eeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHh
Confidence            3445677899999999999999988888777666554 577778889999999999988888899999999999998765


Q ss_pred             HHHHHHHHHHHHHHH-HHhhccccCCCcchHHHHHhhHH
Q 047275          128 GFQVCTAIGVLGANL-LNYGTQKIKGGWGWRISLSMAAA  165 (319)
Q Consensus       128 ~~~~~~~~G~~~~~~-~~~~~~~~~~~~gWr~~f~~~~~  165 (319)
                      ..+. ..+|...+.. .++..+    +.|-...|.+...
T Consensus       338 ~~~~-~~~G~~~Gp~~~G~l~~----~~g~~~~~~~~~~  371 (395)
T PRK10054        338 AQSL-GWLGAAINPLVSGVILT----TLPPWSLFVILAL  371 (395)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHH----HcChhhHHHHHHH
Confidence            4442 2234333332 223222    2455555555433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.33  E-value=2.6e-06  Score=75.57  Aligned_cols=130  Identities=15%  Similarity=0.112  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchh--h--hHHHHHHHHHhhhhhhccchhhHHHHhcCC
Q 047275           43 SPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFN--V--YMLILGRVLLGVGIGFSNQSVPLYLSEMAP  118 (319)
Q Consensus        43 ~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~--~--~~li~~R~l~Gig~g~~~~~~~~~i~e~~p  118 (319)
                      +..+..+-|.++.+++.||+|||+.+..+.+++.++.++.....+  .  ..++.+|++.    .+.+..+++|.-|.+|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyP  464 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYP  464 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccc
Confidence            345566889999999999999999999999999999887554433  2  2345666554    4556678899999999


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 047275          119 PKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTP  181 (319)
Q Consensus       119 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~  181 (319)
                      ...|+...+..+...=+|.++.++++...+.     +=-.+..+.+...++..+..-++|-++
T Consensus       465 TavRatgvGtcSsmaRIggI~~p~iA~~~e~-----s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  465 TAVRATGVGTCSSMARIGGIFSPVIAMRAEL-----STSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhhcchhhhhhHHhhhhhhhhHHHHHhcc-----ceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999986666555556666666655532221     111344455555455556666666554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.32  E-value=4.6e-06  Score=77.03  Aligned_cols=135  Identities=12%  Similarity=0.040  Sum_probs=85.1

Q ss_pred             CcchhhHHhHH-HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh---hhc-hhhhHHHHHH----HHHhhhhh
Q 047275           33 NSQLLTTFTSS-PFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG---GAA-FNVYMLILGR----VLLGVGIG  103 (319)
Q Consensus        33 ~~~~~~~~~~~-~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~---~~a-~~~~~li~~R----~l~Gig~g  103 (319)
                      ++++.+.+... ...+..+|.++.|++.||+|||+.+..+.....+..+..   +.. .+.+.+++.=    +..|++.+
T Consensus       243 ~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (402)
T PRK11902        243 SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTA  322 (402)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            34555555443 344678999999999999999998877776655554322   333 3445444433    56777788


Q ss_pred             hccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhc
Q 047275          104 FSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGA  174 (319)
Q Consensus       104 ~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~  174 (319)
                      ...+..+.++.+..|.++++.......++...+   +.+.+...    +.+||+..|.+..+.+++..+..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~G~l~----~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        323 AFVALLMALCNRSFSATQYALLSALASVGRVYV---GPTSGYLV----EAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHhChHHHHHHHHHHHHHHHHHH
Confidence            888888889899888877765443333333222   22222222    34789999988777765544433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.32  E-value=6.3e-06  Score=74.49  Aligned_cols=147  Identities=16%  Similarity=0.129  Sum_probs=106.9

Q ss_pred             ccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           31 KFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      ++++.+...+.-...+.+++|+++.|++.||+|-|+++..+++...+..+...+......+.+.=.+.|...|+.++.+-
T Consensus       284 gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SR  363 (438)
T COG2270         284 GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSR  363 (438)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHH
Confidence            34566777777777888899999999999999999999999999999888877777777788888999999999999999


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCC
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDT  180 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es  180 (319)
                      +|.++.+|+++-+++.+++.+.--.+...++ +.+... .+.+  .=|.-+....+...+-++..+.+|+.
T Consensus       364 Sy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t-~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         364 SYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVIT-QITG--SSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHH-HHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence            9999999999999877777666555544443 333322 2222  24443333333323333444455554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.31  E-value=5.8e-06  Score=78.65  Aligned_cols=110  Identities=13%  Similarity=-0.026  Sum_probs=87.0

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh---chhhhHHHHHHHHHhhhhhhccchh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA---AFNVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~---a~~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      ++.+.+.......++..+++++.|++.||+|||+.+..+.++..++..+...   ..+.+.....-++.|+|.|...+..
T Consensus       293 s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~  372 (495)
T PRK14995        293 SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLAS  372 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHH
Confidence            3455566666667788899999999999999999998888877776654332   3456667778899999999999989


Q ss_pred             hHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHH
Q 047275          110 PLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANL  142 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~  142 (319)
                      ...+.+..|++++|...+.......+|...+..
T Consensus       373 ~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~a  405 (495)
T PRK14995        373 TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIA  405 (495)
T ss_pred             HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHH
Confidence            889999999999999888887777777554443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.31  E-value=3.6e-06  Score=76.02  Aligned_cols=135  Identities=19%  Similarity=0.153  Sum_probs=92.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhh-h-chhHHHH-HHHHHHHHHHHHhhhc--hhhhHHHHHHHHHhhhhhhcc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA-L-GRKASIL-VGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~-GRr~~~~-~~~~~~~~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~  106 (319)
                      ++....++..+.+=.+++.|++++|+++|+ | |||.... +.++...++-...-.+  .|+.+..++=++.|+.+-+-.
T Consensus       285 ~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq  364 (448)
T COG2271         285 FSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ  364 (448)
T ss_pred             CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH
Confidence            445666677788888999999999999998 4 7885332 2222222222222233  466899999999999998888


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHH-HHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAI-GVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      -.......|..|++--|.+.+....+..+ |...+.   +....+.+++||...|.+..+.+++
T Consensus       365 mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~---~~~g~i~d~~gW~g~Fi~~~~~a~l  425 (448)
T COG2271         365 MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAG---LPLGYIADTWGWDGGFIVLSIAALL  425 (448)
T ss_pred             HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcC---CcceeeEecCCCcchHHHHHHHHHH
Confidence            88888889999999999888887777766 543332   2223333447898887664444333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.28  E-value=1.7e-05  Score=72.88  Aligned_cols=135  Identities=12%  Similarity=-0.002  Sum_probs=88.2

Q ss_pred             CcchhhHHhHHHH-HHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh------chhhhHHHHHHHHHhhhhhhc
Q 047275           33 NSQLLTTFTSSPF-IAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA------AFNVYMLILGRVLLGVGIGFS  105 (319)
Q Consensus        33 ~~~~~~~~~~~~~-~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~------a~~~~~li~~R~l~Gig~g~~  105 (319)
                      ++++.+....... .+..+|.++.|++.||+|+|+.+..+.....+.......      .++...+...-.+.+++.|..
T Consensus       241 s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  320 (390)
T TIGR02718       241 PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGIT  320 (390)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHH
Confidence            4555666555443 466788999999999999999988877655333222111      233444556666777778888


Q ss_pred             cchhhHHHHhcCCC-CCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHH
Q 047275          106 NQSVPLYLSEMAPP-KHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASIL  170 (319)
Q Consensus       106 ~~~~~~~i~e~~p~-~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~  170 (319)
                      .+.....+.+..++ +++|+..+..+....+|...+..++...   .+.+||+..|.+.++..++.
T Consensus       321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l---~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       321 SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL---TDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHccHHHHHHHHHHHHHH
Confidence            78888887777776 7889877777777777765554443222   12357888887766654443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.27  E-value=6.8e-06  Score=86.01  Aligned_cols=131  Identities=15%  Similarity=0.054  Sum_probs=95.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--------------------hhhhHH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--------------------FNVYML   91 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--------------------~~~~~l   91 (319)
                      .+....+.+.+...+|+++|+++.|++.|+.++++.+..+.++..++.+..++.                    .+.+.+
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRI  337 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHH
Confidence            345677888888999999999999999998887776555555555444433332                    677888


Q ss_pred             HHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhH
Q 047275           92 ILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAA  164 (319)
Q Consensus        92 i~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~  164 (319)
                      +++-++.|++.|...+...+++.+.+|++.||++.+..+....+|..++.++...+..  ...++...+.+.+
T Consensus       338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~--~~~~~~~~~~~~~  408 (1140)
T PRK06814        338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA--LGFSIPWIILFIA  408 (1140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHH
Confidence            8999999999999999999999999999999998888877777765555443322211  1235555554433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.27  E-value=0.00015  Score=70.89  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=90.5

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhchh--------hhHHHHHHHHHhhhhhh
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAAFN--------VYMLILGRVLLGVGIGF  104 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a~~--------~~~li~~R~l~Gig~g~  104 (319)
                      ......+...+....-+.+++.|+++|+ +||++.++++.++..+|..+.+++..        ...++++=.+..+|.|+
T Consensus        22 ~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~Gg  101 (654)
T TIGR00926        22 ESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGG  101 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccc
Confidence            3444444455555556888889999994 99999999999999998877655321        23466888899999999


Q ss_pred             ccchhhHHHHhcCCCCCCcc---hhhHHHHHHHHHHHHHH-HHHhhcccc---CCCcchHHHHHhhHHHHHH
Q 047275          105 SNQSVPLYLSEMAPPKHRGA---FNIGFQVCTAIGVLGAN-LLNYGTQKI---KGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       105 ~~~~~~~~i~e~~p~~~Rg~---~~~~~~~~~~~G~~~~~-~~~~~~~~~---~~~~gWr~~f~~~~~~~~~  169 (319)
                      .-+...+...|-++++++..   +-..+..+..+|.+++. +..+..+..   ....+|...|.+..+..++
T Consensus       102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~i  173 (654)
T TIGR00926       102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMIL  173 (654)
T ss_pred             cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHH
Confidence            99999999999987654432   33344444455544333 333332221   1234799988877665444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.26  E-value=6.9e-06  Score=76.84  Aligned_cols=144  Identities=14%  Similarity=0.068  Sum_probs=79.4

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHH---HHHHHhhh--chhhhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFL---AGSALGGA--AFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~---~~~~~~~~--a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++.+.+.......+++.++.++.|+++||+|+++....+.....   ++......  ..+.+...+.-++.|.+..+...
T Consensus       285 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  364 (438)
T TIGR00712       285 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVM  364 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHH
Confidence            44555666666777889999999999999965432222222111   11111111  22334444555566655433222


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHH-HHHH-HHHHhhccccCCCcchHHHHHhhHHHHHH-HHHhcccccCC
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIG-VLGA-NLLNYGTQKIKGGWGWRISLSMAAAPASI-LTLGALILPDT  180 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G-~~~~-~~~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es  180 (319)
                      .......|.+|+++||...+..+....+| ...+ .+.+...    +++||...+.+.....++ ..+....+||+
T Consensus       365 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       365 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV----DFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH----HhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33356789999999998877776544443 3333 3333332    235788877654443333 33444556665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.24  E-value=3.7e-05  Score=70.09  Aligned_cols=112  Identities=12%  Similarity=0.117  Sum_probs=74.3

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh---hh-chhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG---GA-AFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~---~~-a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      +++++.+.+.....++..++.++.|++.||+|||+.+..+..+..+.....   .. ..+++.+.++-.+.+.+.+...+
T Consensus       227 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T PRK11102        227 VSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISS  306 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence            345667777777888889999999999999999999988877654433222   11 23455555555556666666666


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHH-HHHHHHHHHHHHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQV-CTAIGVLGANLLN  144 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~-~~~~G~~~~~~~~  144 (319)
                      ....++.|..| ++||...+.... ...+|...+.+.+
T Consensus       307 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        307 NAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677778766 788876655433 2345555555544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.24  E-value=2.7e-05  Score=71.83  Aligned_cols=132  Identities=8%  Similarity=-0.025  Sum_probs=87.4

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHH-HHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLA-GSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~-~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      +.+..+.......++..+|.++.+++.||.+|+ .++.+...... ..++.....+.+.+.+.-++.|++.+...+...+
T Consensus       250 s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  328 (394)
T PRK10213        250 GVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWST  328 (394)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            455666777777788899999999999996544 44444343333 3344445667788888999999999999999998


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      ++.+..| +++++..+.......+|...+..+...+   .+..|++..+...++...+
T Consensus       329 ~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l---~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        329 WITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYA---LDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccChhhHHHHHHHHHHH
Confidence            9998887 4455555444455555554444332222   1235788877776654433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.23  E-value=4.2e-06  Score=75.86  Aligned_cols=125  Identities=22%  Similarity=0.189  Sum_probs=80.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhch-hHHHH-HHHHHH-HHHHHHhhh--chhhhHHHHHHHHHhhhhhhcc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGR-KASIL-VGGVAF-LAGSALGGA--AFNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GR-r~~~~-~~~~~~-~~~~~~~~~--a~~~~~li~~R~l~Gig~g~~~  106 (319)
                      .++.+.+...+...++..++.++.|++.||+++ |+... ...... .++......  ..+....++.-++.|+..++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  328 (379)
T TIGR00881       249 FSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQ  328 (379)
T ss_pred             CCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhh
Confidence            344566667777788889999999999998643 33222 211111 111111111  3455667777888888777766


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHH
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISL  160 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f  160 (319)
                      +....++.|..|+++||+..+..+....+|...+. +.+...    +.+||++.|
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~----~~~g~~~~f  379 (379)
T TIGR00881       329 MLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA----DGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH----HhhcccccC
Confidence            77778899999999999988888877777755444 333332    346787653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.22  E-value=6.3e-06  Score=74.02  Aligned_cols=106  Identities=23%  Similarity=0.285  Sum_probs=86.5

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc---hhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA---FNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a---~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+.+.+.+...+++.++.++.|++.||+|+|+..........+........   .+....++.-++.|++.+...+....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  322 (352)
T PF07690_consen  243 SQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFS  322 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566777788888889999999999999888777777777766654443   35577778889999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGA  140 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~  140 (319)
                      ++.|..|+++||+..+.......+|..++
T Consensus       323 ~~~~~~~~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  323 LIQELVPPEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             HHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999998888887777776544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09669 putative symporter YagG; Provisional

Probab=98.22  E-value=5.6e-05  Score=70.82  Aligned_cols=81  Identities=22%  Similarity=0.219  Sum_probs=63.8

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh--chhhhHHHHHHHHHhhhhhhccchhhHHHHh
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA--AFNVYMLILGRVLLGVGIGFSNQSVPLYLSE  115 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~--a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e  115 (319)
                      ..+.....+..+++.+++++++||+|||+.+..+.+...+......+  ..+.+.+++.-++.|++.++..+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444556677789999999999999999999887766654432222  3567778888999999999999999999999


Q ss_pred             cCC
Q 047275          116 MAP  118 (319)
Q Consensus       116 ~~p  118 (319)
                      ..+
T Consensus       347 ~~d  349 (444)
T PRK09669        347 VVD  349 (444)
T ss_pred             hhh
Confidence            886

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.22  E-value=1.3e-05  Score=76.28  Aligned_cols=97  Identities=16%  Similarity=0.066  Sum_probs=79.8

Q ss_pred             HHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchh---------hhHHHHHHHHHhhhhhhccchhhHHHHhcC
Q 047275           47 AGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFN---------VYMLILGRVLLGVGIGFSNQSVPLYLSEMA  117 (319)
Q Consensus        47 g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~---------~~~li~~R~l~Gig~g~~~~~~~~~i~e~~  117 (319)
                      .+.+.+.+++++.+|++..+.+.++.++..++.+..+.+.+         .+.++..+++.|+|++...|....++.+.+
T Consensus       332 ~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a  411 (500)
T PRK09584        332 GSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLV  411 (500)
T ss_pred             HHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            33445555678888888778889999988888877666654         458999999999999999999999999999


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHH
Q 047275          118 PPKHRGAFNIGFQVCTAIGVLGANLL  143 (319)
Q Consensus       118 p~~~Rg~~~~~~~~~~~~G~~~~~~~  143 (319)
                      |++.||++.+.+.+..++|..++...
T Consensus       412 P~~~rg~~~g~~~l~~a~g~~~~g~~  437 (500)
T PRK09584        412 PQRLMGFIMGSWFLTTAGAALIAGYV  437 (500)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888886655443

>TIGR00896 CynX cyanate transporter

Probab=98.19  E-value=1.1e-05  Score=73.14  Aligned_cols=104  Identities=13%  Similarity=0.013  Sum_probs=72.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL-GRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      .+..+.+.+.+...++..++.++.|++.||+ +||+.+..+..+..++.++..+.++..... .-++.|++.|...+...
T Consensus       229 ~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~  307 (355)
T TIGR00896       229 ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLAL  307 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHH
Confidence            3456677788888889999999999999999 566777777777777766655554433322 34688999999988877


Q ss_pred             HHHHhcCC-CCCCcchhhHHHHHHHHH
Q 047275          111 LYLSEMAP-PKHRGAFNIGFQVCTAIG  136 (319)
Q Consensus       111 ~~i~e~~p-~~~Rg~~~~~~~~~~~~G  136 (319)
                      ..+.+..+ +++++...+..+....+|
T Consensus       308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~  334 (355)
T TIGR00896       308 TLIGLRSRQAAQAAALSAMAQSIGYLL  334 (355)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            77765554 456676655544433333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.18  E-value=3.1e-05  Score=69.08  Aligned_cols=126  Identities=8%  Similarity=0.012  Sum_probs=85.0

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      ++++..+...+.+..+..+|.++.+++.||+|+|+.+..+..+..++.++....++... ..+=++.|++.+..+|...+
T Consensus       175 ~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s  253 (310)
T TIGR01272       175 LPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFS  253 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            45667777788888888999999999999999999988888777776655544444332 23555899999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHH-HHHHHHHHhhccccCCCcchHHHHHhhH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIG-VLGANLLNYGTQKIKGGWGWRISLSMAA  164 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~gWr~~f~~~~  164 (319)
                      ...+..|++. +...++.. ...+| .+...+++...    +..|-+..|.+..
T Consensus       254 ~a~~~~~~~~-~~asai~~-~~~~Gg~i~P~l~G~la----d~~g~~~a~~v~~  301 (310)
T TIGR01272       254 LALNALGRHT-SQGSGILC-LAIVGGAIVPLLQGSLA----DCLGIQLAFALPV  301 (310)
T ss_pred             HHHhhhhhhh-hhhHHHHH-HHHhcchHHHHHHHHHH----HhccchHHHHHHH
Confidence            9888877643 33333332 22333 23333344332    3356677665433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.17  E-value=1.9e-05  Score=74.52  Aligned_cols=112  Identities=6%  Similarity=-0.029  Sum_probs=89.3

Q ss_pred             ccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh----------chhhhHHHHHHHHHhh
Q 047275           31 KFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA----------AFNVYMLILGRVLLGV  100 (319)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~----------a~~~~~li~~R~l~Gi  100 (319)
                      .++++..+.+.....++.++|..+.+++.+|++.|+++.++.++..++......          .++.+.++..-++.++
T Consensus       284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~  363 (468)
T TIGR00788       284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEV  363 (468)
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHH
Confidence            356777887777777899999999999999999999999999999988755321          1344456677889999


Q ss_pred             hhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHH
Q 047275          101 GIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANL  142 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~  142 (319)
                      +.|....+...++++..|++.+|...++......+|..++..
T Consensus       364 ~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~  405 (468)
T TIGR00788       364 LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGF  405 (468)
T ss_pred             HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998766666666666544443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.13  E-value=1.9e-05  Score=72.28  Aligned_cols=142  Identities=18%  Similarity=0.238  Sum_probs=103.7

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLS  114 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~  114 (319)
                      +..+...+...+...+.-.+..++.+|+|.|+.++++.....+=...+++++|.+.+.+.+.+.|+-.+.....+.-|+.
T Consensus       259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~  338 (412)
T PF01306_consen  259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYIT  338 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCcchhh-HHHHHHHHHHHH-HHHHHhhccccCCCcchHHHHHhhHHHHHHHH-HhcccccCC
Q 047275          115 EMAPPKHRGAFNI-GFQVCTAIGVLG-ANLLNYGTQKIKGGWGWRISLSMAAAPASILT-LGALILPDT  180 (319)
Q Consensus       115 e~~p~~~Rg~~~~-~~~~~~~~G~~~-~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~es  180 (319)
                      +.+|+|..++... ..++...+|..+ ..+.++..    ++.|.+-.|.+.+...+.+. +..+.++++
T Consensus       339 ~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly----d~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  339 AHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY----DRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH----hhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            9999988665332 245555666433 33444433    34688888876665544433 344445444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.13  E-value=1.3e-05  Score=74.39  Aligned_cols=127  Identities=12%  Similarity=0.072  Sum_probs=71.7

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHH-HHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKAS-ILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~-~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      ....+.......+++.+|.++.|+++||+|||+. .........++..+.....+.....++=.+.++|.....+.....
T Consensus       278 ~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  357 (412)
T TIGR02332       278 NIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTT  357 (412)
T ss_pred             HHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhh
Confidence            3455666777888999999999999999997764 333333333332222122221111111122233333333344455


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHHH-HHhhccccCCCc-chHHHHHhhH
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGANL-LNYGTQKIKGGW-GWRISLSMAA  164 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~-gWr~~f~~~~  164 (319)
                      ..|..|+++|+...+..+....+|...+.. .+...    +.. +|++.+.+..
T Consensus       358 ~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~----~~~g~~~~~~~~~~  407 (412)
T TIGR02332       358 PDQSISLQARAIAIAVINATGNIGSALSPFLIGILK----DATGSFNSGLWFVA  407 (412)
T ss_pred             cccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc----ccCCCCchhHHHHH
Confidence            567889999998877777666666554433 33322    223 4777665443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.12  E-value=4.3e-05  Score=70.05  Aligned_cols=132  Identities=10%  Similarity=-0.019  Sum_probs=84.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG-AAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~-~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      .++++.+.+.+...++..++.++.|++.||+|||+.+..+..+..++.++.. ..++.+...+.-++.|.+.++..++..
T Consensus       232 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  311 (382)
T PRK10091        232 FSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQ  311 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3456677777888889999999999999999999999988887777765543 345556667777778887766555444


Q ss_pred             H-HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HhhccccCCCcchHHHHHhhHHHHH
Q 047275          111 L-YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL-NYGTQKIKGGWGWRISLSMAAAPAS  168 (319)
Q Consensus       111 ~-~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~  168 (319)
                      . ...+..|++.++...  ......+|...+... ++..+   ...+|+..+.+..+...
T Consensus       312 ~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~---~~~~~~~~~~~~~~~~~  366 (382)
T PRK10091        312 ILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLT---LGLAYNYVALPAALLSF  366 (382)
T ss_pred             HHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHH---cccCcchHHHHHHHHHH
Confidence            3 344444555566431  233344554443333 22222   12568777766554433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.11  E-value=7.3e-05  Score=68.71  Aligned_cols=104  Identities=12%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      ++.+.+.......++..++.++.+++.||+|||+.+..+..+..++..+..+.++....+..-.+.+.|.+...+.  ..
T Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~  314 (392)
T PRK10473        237 SRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AM  314 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HH
Confidence            4455666667777888899999999999999999999999988888877777666555555555555555544433  34


Q ss_pred             HHhcCCCCCCc-chhhHHHHHHHHHHH
Q 047275          113 LSEMAPPKHRG-AFNIGFQVCTAIGVL  138 (319)
Q Consensus       113 i~e~~p~~~Rg-~~~~~~~~~~~~G~~  138 (319)
                      ..+..|.++|+ ...+....+..+|..
T Consensus       315 ~~~~~~~~~~~g~~~~~~~~~~~~g~~  341 (392)
T PRK10473        315 SQALGPFSLRAGVASSTLGIAQVCGSS  341 (392)
T ss_pred             HHHhccCcccccHHHHHHHHHHHHHHH
Confidence            45556665554 344444444444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.10  E-value=6.3e-05  Score=71.13  Aligned_cols=83  Identities=12%  Similarity=0.195  Sum_probs=64.6

Q ss_pred             hhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh-----chhhhHHHHHHHHHhhhhhhccchhh
Q 047275           36 LLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA-----AFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        36 ~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~-----a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      ..+.+.....++.+++.+++++++||+|||+.+..+..+..++.+....     ..+.+.+++.=++.|++.+...+...
T Consensus       267 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~  346 (473)
T PRK10429        267 LFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQV  346 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555777899999999999999999999888776666544322     34566777777899999999999999


Q ss_pred             HHHHhcCC
Q 047275          111 LYLSEMAP  118 (319)
Q Consensus       111 ~~i~e~~p  118 (319)
                      ++++|..|
T Consensus       347 am~ad~id  354 (473)
T PRK10429        347 IMVADTVD  354 (473)
T ss_pred             HHHhhhhh
Confidence            99999876

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.10  E-value=5.2e-05  Score=60.12  Aligned_cols=102  Identities=23%  Similarity=0.214  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCC
Q 047275           42 SSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKH  121 (319)
Q Consensus        42 ~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~  121 (319)
                      +.......+.+++.+.+.+++|.|+.++++.+.+.+-... -+.++.+.++.+-.+.|++.+..++....|+.+..++++
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~  122 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET  122 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence            4444455678888889999999999999999988865443 467888999999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHH
Q 047275          122 RGAFNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       122 Rg~~~~~~~~~~~~G~~~~~~~~  144 (319)
                      |++..+++-.....+.+.+.+..
T Consensus       123 ~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  123 IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHH
Confidence            99866555444444555554443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK10133 L-fucose transporter; Provisional

Probab=98.09  E-value=5.9e-05  Score=70.61  Aligned_cols=127  Identities=6%  Similarity=-0.023  Sum_probs=87.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      +++.+.+.....+.+++.+|.++.|++.||+|||+++..+.++..++..+..+.++.. -+..=.+.|++.+..+|....
T Consensus       292 ~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~~s  370 (438)
T PRK10133        292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTIFS  370 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHH
Confidence            4566777778888889999999999999999999999888777766665555555532 245567899999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcc-hHHHHHhhH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWG-WRISLSMAA  164 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~  164 (319)
                      ...|..|++ .+...++.......|.+++.+++...+    ..| =|..|.+..
T Consensus       371 ~a~~~~~~~-~~~as~l~~~~~~g~~~~~~i~G~l~~----~~g~~~~~~~v~~  419 (438)
T PRK10133        371 LGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSD----AAGNIPTAELIPA  419 (438)
T ss_pred             HHHcccchh-hccchhHHhHHhccchHHHHHHHHHHH----hccchHHHHHHHH
Confidence            999987764 444444444333223444445554332    234 455555433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.08  E-value=5e-05  Score=71.55  Aligned_cols=144  Identities=17%  Similarity=0.109  Sum_probs=79.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHH--------HHHHHHHHHH--HHHhhh-chhhhHHHHHHHHHhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASI--------LVGGVAFLAG--SALGGA-AFNVYMLILGRVLLGV  100 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~--------~~~~~~~~~~--~~~~~~-a~~~~~li~~R~l~Gi  100 (319)
                      ++..+.+...+...+++.++.++.|+++||+++|+..        ..+......+  .++... ..+....++.=.+.|.
T Consensus       294 ~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  373 (465)
T TIGR00894       294 VSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANA  373 (465)
T ss_pred             cChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3456677778888999999999999999998765321        1111111111  111111 2233344444455555


Q ss_pred             hhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 047275          101 GIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTLGALIL  177 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l  177 (319)
                      +.++..+.......|..|+ .+|...++.+....+|..+.+ +.++..+. .+..+|+..|.+.+...++..+.....
T Consensus       374 ~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~-~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       374 VSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQ-DSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCC-CCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            5555555444455566654 778777777666666544433 33333221 111348888887776655544444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.05  E-value=1.7e-05  Score=75.23  Aligned_cols=145  Identities=14%  Similarity=0.068  Sum_probs=115.2

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhc--hhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALG--RKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~G--Rr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      ++.++.+...+..-+...+|.++.|+++|+..  ++.++.++++...++.+.+.++++++.++..-.+.|+..|...+..
T Consensus       330 ~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~  409 (509)
T KOG2504|consen  330 LSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLT  409 (509)
T ss_pred             CChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778888888888999999999999988  5567777777777788889999999999999999999999999999


Q ss_pred             hHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhccccc
Q 047275          110 PLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILP  178 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~  178 (319)
                      ...+.|..+.++-..+.++..+..+++.+.+..+.....+..+  .|...|...++..++....+...+
T Consensus       410 ~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  410 PVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999998887777778888888887666544433333332  388888888877666555554444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.03  E-value=2.3e-05  Score=73.07  Aligned_cols=102  Identities=18%  Similarity=0.216  Sum_probs=84.5

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAF--NVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~--~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +..+.+.....++..++.+++++++||+|||+++..+.++..++.++..+.+  |.+.+++.-++.|++.|+......++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            4566677778889999999999999999999999999999999998887775  99999999999999999999999999


Q ss_pred             HHhcCCCC-------CCcchhhHHHHHHHHH
Q 047275          113 LSEMAPPK-------HRGAFNIGFQVCTAIG  136 (319)
Q Consensus       113 i~e~~p~~-------~Rg~~~~~~~~~~~~G  136 (319)
                      ++|..+.+       +.|...+......-+|
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~  370 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIG  370 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence            99988743       2344454544444444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.0027  Score=59.06  Aligned_cols=88  Identities=20%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCC
Q 047275           41 TSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK  120 (319)
Q Consensus        41 ~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~  120 (319)
                      .+..+....+.+++.+.+.|..|.|..+.++..++....... +-+|-+.++++-.+.|+|.+..+..-..|++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf-l~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF-LFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH-HhcchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            444555567888999999999999999999999887765433 4567889999999999999999999999999999999


Q ss_pred             CCcchhhHH
Q 047275          121 HRGAFNIGF  129 (319)
Q Consensus       121 ~Rg~~~~~~  129 (319)
                      .+.+..++.
T Consensus       135 tie~Nisi~  143 (461)
T KOG3098|consen  135 TIERNISIF  143 (461)
T ss_pred             hHHHHHHHH
Confidence            888754433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.96  E-value=0.00018  Score=66.44  Aligned_cols=126  Identities=19%  Similarity=0.276  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-hhhhHHH----HHHHHHhhhhhhccchhhHHHHhcCC
Q 047275           44 PFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-FNVYMLI----LGRVLLGVGIGFSNQSVPLYLSEMAP  118 (319)
Q Consensus        44 ~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-~~~~~li----~~R~l~Gig~g~~~~~~~~~i~e~~p  118 (319)
                      ..+...+.-++.+++..|+|-|++++++.+...+=..+.+.. ++.+...    ..-.++|+.-|........|+.|.+|
T Consensus       252 ~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p  331 (400)
T PF03825_consen  252 GVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP  331 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC
Confidence            334444555678999999999999999999999988887776 5544433    33456999999999999999999999


Q ss_pred             CCCCcchhhHHHH-HHHHHHHHHHHH-HhhccccC--CCcchHHHHHhhHHHHHH
Q 047275          119 PKHRGAFNIGFQV-CTAIGVLGANLL-NYGTQKIK--GGWGWRISLSMAAAPASI  169 (319)
Q Consensus       119 ~~~Rg~~~~~~~~-~~~~G~~~~~~~-~~~~~~~~--~~~gWr~~f~~~~~~~~~  169 (319)
                      ++.|+...++... ..++|...+..+ ++..+...  ..+.|...+.+.+...++
T Consensus       332 ~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~  386 (400)
T PF03825_consen  332 PELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALV  386 (400)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence            9999987776544 345665544433 33332211  124566666665554444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.92  E-value=0.00032  Score=67.05  Aligned_cols=86  Identities=12%  Similarity=0.023  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhh-------------hHHHHHHHHHhhhhhhccchhhH
Q 047275           45 FIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNV-------------YMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        45 ~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~-------------~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+-..++..+...+.||+|||+.++.+...+.++.++.+.....             ..+...=+.......+..+....
T Consensus       339 ~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~  418 (513)
T KOG0254|consen  339 GVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWV  418 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhh
Confidence            33445677777999999999999999999999998876644211             12222223333333334455567


Q ss_pred             HHHhcCCCCCCcchhhHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQ  130 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~  130 (319)
                      +.+|.+|.+.|+...++..
T Consensus       419 ~~sEifp~~~r~~~~s~~~  437 (513)
T KOG0254|consen  419 IVSEIFPLRLRSKGASLAV  437 (513)
T ss_pred             hhhccCcHhHHhhhHHHHH
Confidence            8899999999998654443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.91  E-value=0.00014  Score=68.77  Aligned_cols=126  Identities=13%  Similarity=0.029  Sum_probs=86.4

Q ss_pred             hHHhHHHHHHHHHHHhhhh----hhhhh-hchhHH--HHHHHHHHHHHHHHhhh---------chhhhHHHHHHHHHhhh
Q 047275           38 TTFTSSPFIAGLIASLFAS----KVTRA-LGRKAS--ILVGGVAFLAGSALGGA---------AFNVYMLILGRVLLGVG  101 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g----~l~dr-~GRr~~--~~~~~~~~~~~~~~~~~---------a~~~~~li~~R~l~Gig  101 (319)
                      +++.+...+..++..++..    ++.+| .+.+..  +.++.++..++....++         ..|++.++...++.|+|
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            3445555555555554444    44443 222333  35666666666555543         46899999999999999


Q ss_pred             hhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHH
Q 047275          102 IGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAP  166 (319)
Q Consensus       102 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~  166 (319)
                      +....|....+++|.+|++.||.+.+...+...+|..++..+......   ..+|...|...++.
T Consensus       395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~---~~~~~~~~~~~~~~  456 (475)
T TIGR00924       395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV---PQGVTGVFGKIGLV  456 (475)
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHH
Confidence            999999999999999999999999999999999987766554432221   23576666554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.00034  Score=63.65  Aligned_cols=137  Identities=13%  Similarity=0.064  Sum_probs=97.1

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG-GAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~-~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      ++.+..++.--.+-+++.+|+.+.|+++|| +.|+.+.....+..+..+.. ....+.+..++.=++-|++.+.....-.
T Consensus       244 ~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~  322 (394)
T COG2814         244 FSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQ  322 (394)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHH
Confidence            456777788888888999999999999999 88888888877777766554 4455666677777778888777666666


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHh
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLG  173 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~  173 (319)
                      .-+++ .-|+.++...++......+|+-.+..++...   .+++|+....+.+++..++....
T Consensus       323 ~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v---~~~~g~~~~~~~~a~l~~~a~~~  381 (394)
T COG2814         323 TRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLV---LDALGYAATGWVGAALLLLALLL  381 (394)
T ss_pred             HHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHHHHH
Confidence            66666 4467777777777777777765554443322   12378988888877766554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.80  E-value=0.00054  Score=62.66  Aligned_cols=133  Identities=13%  Similarity=0.023  Sum_probs=72.6

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchh---HHHHH-HHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRK---ASILV-GGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr---~~~~~-~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      +.......+.+.++   .++++||..||   +.... ..+...+...+.+...+....++.=.+.|++..+..+....+.
T Consensus       229 ~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  305 (368)
T TIGR00903       229 GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWI  305 (368)
T ss_pred             HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            33344444444444   47777777654   33222 2222233333333344444445555677787887878888899


Q ss_pred             HhcCCCCCCcchhhHHHHHHHHHHH-HHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 047275          114 SEMAPPKHRGAFNIGFQVCTAIGVL-GANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD  179 (319)
Q Consensus       114 ~e~~p~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~e  179 (319)
                      +|.+|++.||+..+.......+|.+ ...+.+....      +-+..|.+.+.+.++..+....+++
T Consensus       306 ~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~------~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       306 GKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS------SAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999987777665555543 3333333221      3344454445554444333333343

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.79  E-value=0.00082  Score=62.52  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=68.4

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--hhhhHHHHHHHHHhhhhhhccchhhHHHHhc
Q 047275           39 TFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSNQSVPLYLSEM  116 (319)
Q Consensus        39 ~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~  116 (319)
                      ........+.+++.+++.++++|+|+|+++.++.++..++..+.-+.  .+.+.+++..++.++|.+...+...++++|.
T Consensus       276 ~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~  355 (467)
T COG2211         276 LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADT  355 (467)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcch
Confidence            34455555666779999999999999999999999999998876665  4789999999999999999999999999877


Q ss_pred             CC
Q 047275          117 AP  118 (319)
Q Consensus       117 ~p  118 (319)
                      .+
T Consensus       356 vD  357 (467)
T COG2211         356 VD  357 (467)
T ss_pred             hh
Confidence            65

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.79  E-value=0.00067  Score=62.36  Aligned_cols=111  Identities=19%  Similarity=0.108  Sum_probs=75.1

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHH-HHHHHhhh--chhhhHHHHHHHHHhhhhhhccchh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFL-AGSALGGA--AFNVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~-~~~~~~~~--a~~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      ++.+.+.+.....++.++|+++.+++.||+||+........... +.......  ..+.+.+++..++.|++.+...+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (394)
T PRK11652        241 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLA  320 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666777888899999999999984433322221111 11111111  2456778888999999999999999


Q ss_pred             hHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 047275          110 PLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  144 (319)
                      ..+..|..| +++|...++.+....+|...+..+.
T Consensus       321 ~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~  354 (394)
T PRK11652        321 TSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS  354 (394)
T ss_pred             HHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887 5788887777777777765555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.73  E-value=0.014  Score=54.97  Aligned_cols=109  Identities=11%  Similarity=0.041  Sum_probs=76.9

Q ss_pred             chhhHHhHHHHHHHHH-HHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--h-------------------------
Q 047275           35 QLLTTFTSSPFIAGLI-ASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--F-------------------------   86 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~i-g~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~-------------------------   86 (319)
                      +...++-+..++-+.+ ..++.+++++|++|++.+-.....|...-.+.++.  +                         
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            4555555555554444 48889999999999999888888777766554443  1                         


Q ss_pred             ----hhhHHHHHHHHHhhhhhhccc-hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 047275           87 ----NVYMLILGRVLLGVGIGFSNQ-SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL  143 (319)
Q Consensus        87 ----~~~~li~~R~l~Gig~g~~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~  143 (319)
                          +.|...+.-+...+-.....+ .-..+++|.++.++-.+.-+.++++..+|.+.++.+
T Consensus       123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~  184 (472)
T TIGR00769       123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT  184 (472)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                233444555555565555565 667889999998888888888999999987766543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.72  E-value=9.8e-05  Score=66.92  Aligned_cols=98  Identities=16%  Similarity=0.096  Sum_probs=68.2

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--h--hhhHHHHHHHHHhhhhhhccch
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--F--NVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~--~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      ++.+.+.+.+...+++.++.++.|++.||+|||+.+..+......+..+..+.  .  +.+.+.+.-++.+++.|...+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  338 (366)
T TIGR00886       259 SKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGS  338 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccch
Confidence            34556666777777888999999999999999988877776666655544332  2  5555555555566666666666


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQV  131 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~  131 (319)
                      ...++.|..| +++|...+..+.
T Consensus       339 ~~~~~~~~~~-~~~g~~~g~~~~  360 (366)
T TIGR00886       339 TFALVPHIFR-RATGAVSGLVGA  360 (366)
T ss_pred             hhhcchhhch-hhcccHHHHHHH
Confidence            6677788776 678876665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.64  E-value=2.8e-06  Score=79.59  Aligned_cols=132  Identities=16%  Similarity=0.180  Sum_probs=74.2

Q ss_pred             HHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh--h--c-h-----hhhHHHHHHHHHhhhhhhccchhhHHHHhc
Q 047275           47 AGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG--A--A-F-----NVYMLILGRVLLGVGIGFSNQSVPLYLSEM  116 (319)
Q Consensus        47 g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~--~--a-~-----~~~~li~~R~l~Gig~g~~~~~~~~~i~e~  116 (319)
                      ...++.++...+.||+|||+.++.+.....++.+..+  .  . .     +...+...-...-....+..+....+.+|.
T Consensus       298 ~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~El  377 (451)
T PF00083_consen  298 VNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAEL  377 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccc
Confidence            3456667777999999999999999888877776654  1  1 1     222222222111111113345556888999


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcc-hHHHHHhhHHHHHHHHHhcccccCCh
Q 047275          117 APPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWG-WRISLSMAAAPASILTLGALILPDTP  181 (319)
Q Consensus       117 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~es~  181 (319)
                      +|.+.|+...+......-++   +.+.+.......+..+ |.......++..+...+...++||+.
T Consensus       378 fPt~~R~~~~~~~~~~~~i~---~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  378 FPTKVRSTGIGLSYAVGRIG---GFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             cccccccccccccccccccc---ccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence            99999998655554333333   2222222222222223 43333344444444556678899994

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.63  E-value=4e-05  Score=70.00  Aligned_cols=130  Identities=18%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             HHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhh--------hHHHHHHHHHhhhhhhccchhhHHHHhcCCCC
Q 047275           49 LIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNV--------YMLILGRVLLGVGIGFSNQSVPLYLSEMAPPK  120 (319)
Q Consensus        49 ~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~--------~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~  120 (319)
                      +.|-.+...+.|+.|||+..+.+.+++.+..+..+...|.        ....+.-++.=+|   -..++-++-+|.+|.+
T Consensus       362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FPar  438 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPAR  438 (538)
T ss_pred             CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHH
Confidence            4577788899999999999999999999999988888772        1222233333333   3344455668999999


Q ss_pred             CCcchhhHHHHHHHHHHHHHH-HHHhhcc-ccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 047275          121 HRGAFNIGFQVCTAIGVLGAN-LLNYGTQ-KIKGGWGWRISLSMAAAPASILTLGALILPDTP  181 (319)
Q Consensus       121 ~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~-~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~  181 (319)
                      .||.+-++.....-+|.+++. ...+..+ ......+-|..|++.+....+..+..+++||+.
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence            999877666555545544333 2233222 111135678888887777777778888899884

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.62  E-value=0.00017  Score=50.65  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=64.3

Q ss_pred             hhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHH
Q 047275           13 FPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLI   92 (319)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li   92 (319)
                      +.|+.|.|.+|.+      ++.++.+++.+.+++|.++|++...++.++..+++.+..+.+...+..+.+++..+.+.+.
T Consensus        11 yTplLP~M~~~~~------ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   11 YTPLLPLMQADGG------LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHhHhHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            4677788877765      4578999999999999999999999999998889999999999999999999988876653

Note that many members are hypothetical proteins.

>PRK11043 putative transporter; Provisional

Probab=97.61  E-value=0.0025  Score=58.71  Aligned_cols=112  Identities=12%  Similarity=-0.059  Sum_probs=74.3

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh---hh--chhhhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG---GA--AFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~---~~--a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++.+.+.......++..+|.++.+++.||+|||+.+........++....   ..  .++...+++.-.+.|++.+...+
T Consensus       236 s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (401)
T PRK11043        236 SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYP  315 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555566778899999999999999987766555444443321   11  34555566677888999999998


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHH-HHHHHHHHh
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIG-VLGANLLNY  145 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G-~~~~~~~~~  145 (319)
                      .......|..| ++||...+........+ ...+.+.+.
T Consensus       316 ~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~  353 (401)
T PRK11043        316 IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSA  353 (401)
T ss_pred             HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777765 57898777766554433 333344443

>PRK11462 putative transporter; Provisional

Probab=97.56  E-value=0.0043  Score=58.51  Aligned_cols=81  Identities=12%  Similarity=0.007  Sum_probs=53.9

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--hhhhHHHHHHHHHhhhhhhccchhhHHHHh
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--FNVYMLILGRVLLGVGIGFSNQSVPLYLSE  115 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~~~~~~~i~e  115 (319)
                      +.+.....++.++|.+++++++||+|+|+++..+.....+..++..+.  .+...+++.=++.|++.++..+....+++|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555667778899999999999999998876555444433333222  222234445567788887777766777777


Q ss_pred             cCC
Q 047275          116 MAP  118 (319)
Q Consensus       116 ~~p  118 (319)
                      ..+
T Consensus       346 ~~d  348 (460)
T PRK11462        346 TVD  348 (460)
T ss_pred             hHh
Confidence            655

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.54  E-value=0.00086  Score=46.43  Aligned_cols=65  Identities=18%  Similarity=0.334  Sum_probs=50.3

Q ss_pred             HhhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          250 QQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      ..++....+..|.|.++++.|.+..+.- +...+.-.+++++.++.|.++||++|++..+.+..++
T Consensus        11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   11 FYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3444555666788888998888876544 5555667889999999999999999999887776655

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.52  E-value=0.0011  Score=62.95  Aligned_cols=107  Identities=14%  Similarity=0.102  Sum_probs=81.6

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchhHH-------HHHHHHHHHHHHHHh-----hh-----chhhhHHHHHHHHHhh
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRKAS-------ILVGGVAFLAGSALG-----GA-----AFNVYMLILGRVLLGV  100 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~-------~~~~~~~~~~~~~~~-----~~-----a~~~~~li~~R~l~Gi  100 (319)
                      +++.+...+..++.+++.+++.||.|||+.       +.++.++..++.+..     ..     ..+.+.++..-+++|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            344455556677888889999999999973       555555555443211     11     2457788899999999


Q ss_pred             hhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 047275          101 GIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  144 (319)
                      |++...++...++.+.+|++.+|..++.+.+...+|..++..++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888866665544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.50  E-value=0.0025  Score=60.13  Aligned_cols=136  Identities=15%  Similarity=0.059  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhhhhhhhhhc-hhHHHHHHHHHHHHHHHHhhhchh---------------------hhHHHHHHHHHhhhh
Q 047275           45 FIAGLIASLFASKVTRALG-RKASILVGGVAFLAGSALGGAAFN---------------------VYMLILGRVLLGVGI  102 (319)
Q Consensus        45 ~~g~~ig~~~~g~l~dr~G-Rr~~~~~~~~~~~~~~~~~~~a~~---------------------~~~li~~R~l~Gig~  102 (319)
                      .+-..+.+++..++.+++| ||+++..+.++..++.....+..+                     .+..++.-.+.|+.-
T Consensus       315 s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~  394 (477)
T TIGR01301       315 SVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPL  394 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHH
Confidence            3333477778889999999 578889998888887766654432                     267778889999999


Q ss_pred             hhccchhhHHHHhcCCC--CCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH-hcccccC
Q 047275          103 GFSNQSVPLYLSEMAPP--KHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL-GALILPD  179 (319)
Q Consensus       103 g~~~~~~~~~i~e~~p~--~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~e  179 (319)
                      +..++.-.+++++..|+  ++.|.++++.+.+..+.+++..+.........++ +=...+.++++..++..+ ..+.+|+
T Consensus       395 A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       395 AITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-GNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999995  4558899999999999977666433222222221 234566777777666444 4555676


Q ss_pred             Ch
Q 047275          180 TP  181 (319)
Q Consensus       180 s~  181 (319)
                      .+
T Consensus       474 ~~  475 (477)
T TIGR01301       474 PR  475 (477)
T ss_pred             CC
Confidence            64

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.49  E-value=0.00025  Score=66.10  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=98.9

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      +...+........|-++.=++.+++-.++||-+++..++.++.+=-+......|.|+.+-.-+++|+..+..+.++.+|+
T Consensus       405 ~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~  484 (618)
T KOG3762|consen  405 KTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYA  484 (618)
T ss_pred             ceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHH
Confidence            34444455556667677778889999999999999999999999988889999999999999999999999999999999


Q ss_pred             HhcCCCCCCcchhhHHHH-----HHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH
Q 047275          114 SEMAPPKHRGAFNIGFQV-----CTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT  171 (319)
Q Consensus       114 ~e~~p~~~Rg~~~~~~~~-----~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  171 (319)
                      +..+||+.|....++.+.     +-++|.+++..+   +.    .++=|..|...++.+++.+
T Consensus       485 s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~---v~----~fg~~ttf~~~giAcl~~l  540 (618)
T KOG3762|consen  485 SHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV---VE----RFGARTTFRIFGIACLVTL  540 (618)
T ss_pred             HhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh---he----eehhHHHHHHHHHHHHHHH
Confidence            999999999876555432     223444333322   11    2455667766665554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.43  E-value=0.0019  Score=60.51  Aligned_cols=74  Identities=16%  Similarity=0.021  Sum_probs=47.1

Q ss_pred             HHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh------chhhhHHHHHHHHHhhhhhhccchhhHHHHhcCC
Q 047275           45 FIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA------AFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAP  118 (319)
Q Consensus        45 ~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~------a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p  118 (319)
                      .+.+.++.+++|+++||+|+|++++++.....++......      ..+++.+.+.-+...++.|.....+.-++.+.+|
T Consensus       296 ~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~  375 (462)
T PRK15034        296 PFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFR  375 (462)
T ss_pred             HHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHh
Confidence            3445677789999999999999999888877776543211      1245555555444444444444455555555555

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.00063  Score=61.71  Aligned_cols=129  Identities=14%  Similarity=0.083  Sum_probs=78.9

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhch-----------hhhHHHHHHHHHhhh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAF-----------NVYMLILGRVLLGVG  101 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~-----------~~~~li~~R~l~Gig  101 (319)
                      ++...+.+++...+-+.+.-+..|+++||+|.+|+.+.......++..+-++..           .+..++...+..|+|
T Consensus       252 ~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~G  331 (417)
T COG2223         252 SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLG  331 (417)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccC
Confidence            345566666666666677778899999999999999998888888777655442           334567778888888


Q ss_pred             hhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHH-HHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          102 IGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGV-LGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       102 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      .|..+-..+.+-    |+ +-|...++......+|. ......+...+. .  -.|...|.+-....++
T Consensus       332 nGsvfk~Ip~if----~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~-t--g~~~~~f~~~~~~~~~  392 (417)
T COG2223         332 NGSVFKMIPVIF----PK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDL-T--GSYTGAFMLLLAFYLV  392 (417)
T ss_pred             cchheeechHHH----Hh-hhhHHHHHHHHhccccccchhHHHHHHHHh-c--ccHHHHHHHHHHHHHH
Confidence            887776666553    33 33444444444444431 111222222111 1  1477777654444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.39  E-value=0.0024  Score=57.02  Aligned_cols=132  Identities=14%  Similarity=0.095  Sum_probs=95.1

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      +++++.+...+...+.++..++....+.+| -.+|+......+++.++..-..+.+....+.- -++.|+|.|+..+...
T Consensus       240 ~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL  318 (395)
T COG2807         240 LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLAL  318 (395)
T ss_pred             CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHH
Confidence            356788888888888889999998888884 66778888888888888777667765544443 3999999999999999


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCC-cchHHHHHhhHHH
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGG-WGWRISLSMAAAP  166 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~gWr~~f~~~~~~  166 (319)
                      ..+.+-++..++.  .......+++|+++.....+..+.++|. -+|+.+...-...
T Consensus       319 ~li~~rs~~a~~A--a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~  373 (395)
T COG2807         319 TLILLRSSDAAIA--AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA  373 (395)
T ss_pred             HHHHhhcCChHHH--HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence            9999887655554  2344555777777666655555444332 4788776544433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.30  E-value=0.0034  Score=60.13  Aligned_cols=130  Identities=18%  Similarity=0.116  Sum_probs=93.0

Q ss_pred             HHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhh---HHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchh
Q 047275           50 IASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVY---MLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFN  126 (319)
Q Consensus        50 ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~---~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~  126 (319)
                      .+....+...|++|||.....+.++..++.++.+...+..   ...+.-.+...+.+........+.+|..|...|+...
T Consensus       365 p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~  444 (521)
T KOG0255|consen  365 PAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAV  444 (521)
T ss_pred             hHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            4445567999999999999999999999999888776554   3677777777888888888899999999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 047275          127 IGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPN  182 (319)
Q Consensus       127 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~  182 (319)
                      +.......+|.+.+..+........+  .+.... ...+..+...+...++||+..
T Consensus       445 ~~~~~~~~~~~i~ap~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  445 GAISAAARLGSILAPLFPLLLRQMFP--LLGLIL-FGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc--cchHHH-HHHHHHHHHHHHHhcCcccCC
Confidence            88888888887776666543332211  121111 223333334444578899854

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.002  Score=55.75  Aligned_cols=132  Identities=10%  Similarity=0.045  Sum_probs=88.0

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      +++...+.+.+....-..+.++++|.+.|+.||+...+.+.....+.+= +.+..+++.=.++-.+.|+...........
T Consensus       297 lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H-~~l~Ft~lsPy~~m~~lGLsysllAcslWP  375 (459)
T KOG4686|consen  297 LSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGH-SGLFFTFLSPYTSMTFLGLSYSLLACSLWP  375 (459)
T ss_pred             CChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHh-hhHHhhhccHHHHHHHHhhhHHHHHHHHhh
Confidence            3456667777777777889999999999999999776666554444321 122333444455666788888877777777


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAA  164 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~  164 (319)
                      .++-..|+++-|+.-+..+.-..+|.....++...+.+-.+++.|--.|.+..
T Consensus       376 ~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  376 CVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             hhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            88888999999987777777777775555544433333333355654554433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.22  E-value=0.018  Score=53.80  Aligned_cols=144  Identities=15%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhc----hhHH-HHHHHHHHHHHHHHhhh----chhhhHHHHHHHHHhhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALG----RKAS-ILVGGVAFLAGSALGGA----AFNVYMLILGRVLLGVGI  102 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~G----Rr~~-~~~~~~~~~~~~~~~~~----a~~~~~li~~R~l~Gig~  102 (319)
                      +++.+.+.+.+...+- ...-++.|.++|-+-    ||+- ++++.++..++....+.    ..+.....+.=++..+|.
T Consensus        22 ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~  100 (433)
T PF03092_consen   22 LSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGY  100 (433)
T ss_pred             CCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence            3455555555544444 355678899999874    4444 44444444333333332    235666677778889999


Q ss_pred             hhccchhhHHHHhcCC--CCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 047275          103 GFSNQSVPLYLSEMAP--PKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPD  179 (319)
Q Consensus       103 g~~~~~~~~~i~e~~p--~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~e  179 (319)
                      ...-..+-.+++|...  |+.||...+.......+|.+.+..++..   ..+..++|..|.+......+..+...++.|
T Consensus       101 a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~---l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  101 AFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGP---LLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             HHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhh---hhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            9999999999999984  3335665556566666676655544322   223356777777655444443333333333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.21  E-value=0.0034  Score=58.28  Aligned_cols=106  Identities=8%  Similarity=-0.017  Sum_probs=76.2

Q ss_pred             HhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCC
Q 047275           40 FTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPP  119 (319)
Q Consensus        40 ~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~  119 (319)
                      ..+....+..+|.++.+++.||+++|+++.++.....+..++....++... ...=++.|++.++.+|+......+..++
T Consensus       274 ~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~  352 (410)
T TIGR00885       274 YNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQ  352 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            444455666899999999999999999998888888888777777766544 5777888999999999999999999887


Q ss_pred             CCCcchhhHHHHHHHHH-HHHHHHHHhhcc
Q 047275          120 KHRGAFNIGFQVCTAIG-VLGANLLNYGTQ  148 (319)
Q Consensus       120 ~~Rg~~~~~~~~~~~~G-~~~~~~~~~~~~  148 (319)
                      +.+.. ......+. +| .+...+.++..+
T Consensus       353 ~~~~~-s~~l~~~~-~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       353 DTKYG-AAGLVMAI-IGGGIVPPLQGFIID  380 (410)
T ss_pred             hhhhh-HHHHHHHH-hccchHHHHHHHHHH
Confidence            76532 22222222 43 344455555443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.08  E-value=0.017  Score=52.68  Aligned_cols=140  Identities=17%  Similarity=0.167  Sum_probs=101.7

Q ss_pred             cccCcchhhHHhHHHHHHHHHHHhhhhhhhh-hhchhHHHHHHHHHHHHHHHH---hhhchhhhHHHHHHHHHhhhhhhc
Q 047275           30 CKFNSQLLTTFTSSPFIAGLIASLFASKVTR-ALGRKASILVGGVAFLAGSAL---GGAAFNVYMLILGRVLLGVGIGFS  105 (319)
Q Consensus        30 ~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~d-r~GRr~~~~~~~~~~~~~~~~---~~~a~~~~~li~~R~l~Gig~g~~  105 (319)
                      +.++..+.+.++..+-.|.++|-...|++.. |.++|+.-.+++..-.++-.+   .+...+.+.+..+=++.|++.|..
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f  318 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF  318 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence            5566788889999999999999999998887 677777666666655555433   444568889999999999999999


Q ss_pred             cchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcc----cc---CCCcchHHHHHhhHHHHHH
Q 047275          106 NQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQ----KI---KGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       106 ~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~----~~---~~~~gWr~~f~~~~~~~~~  169 (319)
                      ...+.+.+.|..++++-|.+.+.+...+++..-++..++....    ..   .+..++-..|.+..+..++
T Consensus       319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~  389 (403)
T PF03209_consen  319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA  389 (403)
T ss_pred             HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999998877777776665322222221111    11   1335788888887765444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.07  E-value=0.0036  Score=59.30  Aligned_cols=68  Identities=13%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             HHhhhhhhHhHhhhHHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHhhHHhhh
Q 047275          249 FQQLTGINVISFYAPVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKL-GRKVLFLVGGILMFV  317 (319)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~g~~~~~~  317 (319)
                      ......++.+..++|.++++ .+.+..+.. ...........++.+++|+++||+ |||+.+++|.+++.+
T Consensus        19 ~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462         19 IWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            33444567777788877754 566655443 334455566778899999999999 999998877766654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.0019  Score=58.27  Aligned_cols=131  Identities=15%  Similarity=0.068  Sum_probs=91.4

Q ss_pred             hhhHHhHHHHHHHHHHHhhhhhhhhhhc--hhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHH
Q 047275           36 LLTTFTSSPFIAGLIASLFASKVTRALG--RKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYL  113 (319)
Q Consensus        36 ~~~~~~~~~~~g~~ig~~~~g~l~dr~G--Rr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i  113 (319)
                      +.+..---.++...+|+.++|.++||++  |-..-+.++....+.+....+++++..+++-++..|++.+...+...-..
T Consensus       307 ~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l  386 (464)
T KOG3764|consen  307 EVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTL  386 (464)
T ss_pred             ceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence            3333333356677899999999999999  65555666666666677778899999999999999999999888777777


Q ss_pred             HhcCCCCCCc------chhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          114 SEMAPPKHRG------AFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       114 ~e~~p~~~Rg------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      .+..++++-.      ...+++..++++|...+...+..   +...+|.+|.-.+.++..++
T Consensus       387 ~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~---iv~~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  387 GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGS---LVEAIGFEWLMTIIGILNLI  445 (464)
T ss_pred             HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccch---heeehhHHHHHHHHHHHHHH
Confidence            7777665543      34555666666665555443322   23346788876665555444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.82  E-value=0.018  Score=51.32  Aligned_cols=241  Identities=12%  Similarity=0.086  Sum_probs=129.7

Q ss_pred             HhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHH
Q 047275           52 SLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQV  131 (319)
Q Consensus        52 ~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~  131 (319)
                      -++.=.+.|..--|++++.-.+.+.....+--+.++.+.+=+.-+.-|...+... +-++|+-+..||+++-+..+-.-.
T Consensus        59 LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-AYysYIYs~Vd~~~Yqrvt~y~Ra  137 (433)
T KOG3810|consen   59 LVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-AYYSYIYSKVDPEMYKRVTGYCRA  137 (433)
T ss_pred             HHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-hhhheeeeecCHHHHHHHHHHhHH
Confidence            3334457888889999999888888888888889999999999999999977764 556788888888876655444444


Q ss_pred             HHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHH
Q 047275          132 CTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAEL  211 (319)
Q Consensus       132 ~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  211 (319)
                      ....|...+..++-+.-.. +.++.+.+=.+......+..+...++|.-++.+.-+..+++......++...    +.+.
T Consensus       138 A~L~g~~~g~vlaQlLvs~-~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~----~~~~  212 (433)
T KOG3810|consen  138 AFLVGKFVGSVLAQLLVSL-ETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNP----QASY  212 (433)
T ss_pred             HHHHHhHHHhHHHHHHhhh-cccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCc----cchh
Confidence            4444444444433322111 1233433323333332334445567776665544332222211111111111    1111


Q ss_pred             HHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCCCchhhH--HHHHHHHHHHHH
Q 047275          212 DDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSL--LMSAVVTGGVST  289 (319)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  289 (319)
                      .+..+.     ....-.+++-.. ++++.+....+......++++-+..|...+.++.. +.+.+.  +..=....+...
T Consensus       213 ~~~l~~-----~~~~l~~~l~~~-y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa  285 (433)
T KOG3810|consen  213 MSYLRG-----AFVLLWRDLQEC-YSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGA  285 (433)
T ss_pred             hHHHHH-----HHHHHHHHHHHH-hcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHH
Confidence            110000     000011122111 22333445556666678888999899888877764 322222  111122233455


Q ss_pred             HHHHHHHHHHHhcCCc
Q 047275          290 IATITSMILTDKLGRK  305 (319)
Q Consensus       290 ~~~~~~g~l~dr~Grr  305 (319)
                      ++.+..|++--.+.|+
T Consensus       286 ~~~~~~g~l~i~w~r~  301 (433)
T KOG3810|consen  286 IAALAAGYLNINWNRW  301 (433)
T ss_pred             HHHHHHHheeeccchh
Confidence            6677777776666665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.46  E-value=0.03  Score=52.78  Aligned_cols=144  Identities=17%  Similarity=0.099  Sum_probs=76.5

Q ss_pred             ccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchh-------HHHHHHHHHHHHHHHH--hhhchh-hhHHHHHHHHH
Q 047275           29 YCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRK-------ASILVGGVAFLAGSAL--GGAAFN-VYMLILGRVLL   98 (319)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr-------~~~~~~~~~~~~~~~~--~~~a~~-~~~li~~R~l~   98 (319)
                      .++++-++.+.+++..++.+.+..+++|+++|+.-+|       +-+.-+......+..+  .++.++ ...+.+.=+..
T Consensus       288 VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~  367 (466)
T KOG2532|consen  288 VLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTI  367 (466)
T ss_pred             HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHH
Confidence            3456778899999999999999999999999998662       2222222222222222  233332 22122222222


Q ss_pred             hhhhhhccchhhHHHHhcC-CCCCCcchhhHHHHHHHHHHHH-HHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhc
Q 047275           99 GVGIGFSNQSVPLYLSEMA-PPKHRGAFNIGFQVCTAIGVLG-ANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGA  174 (319)
Q Consensus        99 Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~  174 (319)
                      +++..+...... +..-.. -|++-+...++.+....+..++ ..+++....+ ...-.||+.|.+.+...++..+.+
T Consensus       368 ~~~~~g~~~~Gf-~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~-~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  368 AIGLSGFNISGF-YKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTD-NTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHHcccchhhh-HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC-CCHHHHHHHHHHHHHHHHHhchhe
Confidence            233333222222 222212 3455566666655555554433 3344444421 123579999998777665544433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.35  E-value=0.021  Score=55.16  Aligned_cols=56  Identities=23%  Similarity=0.242  Sum_probs=38.6

Q ss_pred             hhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhhc
Q 047275          261 YAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVS  318 (319)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~~  318 (319)
                      -++++.+..|.+....  .......+...++.++.|.++|.+|||...+.+.++..+.
T Consensus        66 ~l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG  121 (599)
T PF06609_consen   66 ILPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVG  121 (599)
T ss_pred             HHHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhH
Confidence            3456666666654332  2333455566777889999999999999988877776554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.33  E-value=0.064  Score=49.77  Aligned_cols=103  Identities=15%  Similarity=0.108  Sum_probs=57.6

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh-----hchhhhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG-----AAFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~-----~a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++.+.++.......+..+++.+.+++.++.++++.......+..++..+..     ..++++.+++.-++.|+|.+...+
T Consensus       252 s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p  331 (413)
T PRK15403        252 TTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFP  331 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhH
Confidence            445556666556677788888888766544444433222222233322221     123444467888999999999888


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIG  136 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G  136 (319)
                      ...... ...+...+|+..+........+
T Consensus       332 ~~~~~a-l~~~~~~~G~a~a~~~~~~~~~  359 (413)
T PRK15403        332 TLFRFT-LFSNNLPKGTVSASLNMVILMV  359 (413)
T ss_pred             HHHHHH-hccCCCCCcHHHHHHHHHHHHH
Confidence            777533 2223334676665555444333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.31  E-value=0.039  Score=50.41  Aligned_cols=103  Identities=20%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhc---hh------hhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcc---hhhHHHHHH
Q 047275           66 ASILVGGVAFLAGSALGGAA---FN------VYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGA---FNIGFQVCT  133 (319)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~a---~~------~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~---~~~~~~~~~  133 (319)
                      ++++++.++..+|.++..++   ..      ...+.++-++.++|.|+.=+....+.+|-++++++..   +-..+..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56677777788887763322   22      2678999999999999999999999999998775443   334455556


Q ss_pred             HHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH
Q 047275          134 AIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT  171 (319)
Q Consensus       134 ~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  171 (319)
                      .+|.+++.....   .+.++.||.+.|.+..+..++..
T Consensus        82 n~G~~~~~~~~~---~i~~~~~~~~~f~i~~~~~~~~~  116 (372)
T PF00854_consen   82 NIGSLFSPTLVP---YIQQNYGWFLGFGIPAIGMLLAL  116 (372)
T ss_dssp             HHHHHHHHHCCC---HHHHCS-HHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccch---hhccccchhhhhhHHHHHHHHHH
Confidence            666655543322   22345789999988776544433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.22  E-value=0.012  Score=40.71  Aligned_cols=44  Identities=11%  Similarity=0.267  Sum_probs=38.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAF   75 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~   75 (319)
                      +++++.+.+.+...+..+++++++|.++||+||++..+....++
T Consensus        32 l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   32 LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            56789999999999999999999999999999999887766543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.11  E-value=0.031  Score=52.99  Aligned_cols=126  Identities=10%  Similarity=-0.010  Sum_probs=72.8

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhh----hchhHHHHHHHHHHHHHHHHhhhchh-hhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRA----LGRKASILVGGVAFLAGSALGGAAFN-VYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr----~GRr~~~~~~~~~~~~~~~~~~~a~~-~~~li~~R~l~Gig~g~~~~  107 (319)
                      +....+.++....++++++.+++|+++||    +.+|..+...+.++.+.+.+...+.+ ......+=+..+.+.+...+
T Consensus       307 s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  386 (495)
T KOG2533|consen  307 SELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAI  386 (495)
T ss_pred             ChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHH
Confidence            34555667777888999999999999999    78887777777777666543333333 33333334444444555555


Q ss_pred             hhhHHHHhcCCCCCCcc-hhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHH
Q 047275          108 SVPLYLSEMAPPKHRGA-FNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISL  160 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f  160 (319)
                      .....+++...++.|.. ..++...+.+.+..+.+.+  ......+.++|-..|
T Consensus       387 ~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~--~~~~~ap~y~~~~~f  438 (495)
T KOG2533|consen  387 IALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL--FRSLDAPRYGWGAVF  438 (495)
T ss_pred             HHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh--cccccCcchhhhhHH
Confidence            66666677766555543 2233333333322222221  122334446777776

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.07  E-value=0.11  Score=48.87  Aligned_cols=110  Identities=17%  Similarity=0.212  Sum_probs=87.4

Q ss_pred             cccCcchhhHHhHHHHHHHHHHHhhhh-hhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccch
Q 047275           30 CKFNSQLLTTFTSSPFIAGLIASLFAS-KVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        30 ~~~~~~~~~~~~~~~~~g~~ig~~~~g-~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      +.++.++.+.+.+....-..++..+.. .+...+|-|+.+..+++...+..+..+++++.|+......+.++. +...+.
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~pa  350 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFPA  350 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhHH
Confidence            334566666666666666667776665 777789999999999999999999999999999999999998887 555677


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGA  140 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~  140 (319)
                      ..++++-+.++++||+..+..+...++..+.+
T Consensus       351 ~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~  382 (463)
T KOG2816|consen  351 IRAFASILVSPEEQGKVFGIISGIEGLSGVVS  382 (463)
T ss_pred             HHhHHHhhcccccccchhhHHHHHHHHhhhhh
Confidence            77899999999999998777776666654433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.78  E-value=0.094  Score=47.76  Aligned_cols=86  Identities=8%  Similarity=-0.023  Sum_probs=72.1

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHH
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~  112 (319)
                      +.+..+...+.+..+.++|-++..++..|+-..+.+.+..+.-.+-.+..+++.+... +.+=++.|...++.+|+..+.
T Consensus       270 ~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-~~~l~~ig~F~simfPTIfsl  348 (422)
T COG0738         270 NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-LYALFLIGLFNSIMFPTIFSL  348 (422)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHhHHHHHHHHHH
Confidence            4567778888888899999999999999999999998888777777777777777544 455678899999999999999


Q ss_pred             HHhcCCC
Q 047275          113 LSEMAPP  119 (319)
Q Consensus       113 i~e~~p~  119 (319)
                      ..+-.|+
T Consensus       349 al~~l~~  355 (422)
T COG0738         349 ALKNLGE  355 (422)
T ss_pred             HHhccCc
Confidence            9999983

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.68  E-value=2  Score=40.80  Aligned_cols=100  Identities=17%  Similarity=0.119  Sum_probs=63.6

Q ss_pred             HHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc--h-----------------------------hhhHHHHHH
Q 047275           47 AGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA--F-----------------------------NVYMLILGR   95 (319)
Q Consensus        47 g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a--~-----------------------------~~~~li~~R   95 (319)
                      ...+...+..+++++++|.+++...+..|...-.+.++.  |                             +.|...+.-
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            455667778999999999999888887777665554442  1                             112222222


Q ss_pred             HHHhhhhhhccc-hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhh
Q 047275           96 VLLGVGIGFSNQ-SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYG  146 (319)
Q Consensus        96 ~l~Gig~g~~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~  146 (319)
                      ...-+-.....+ .-..+..|.++.++-.++-..+.++..+|.+.++ ...+.
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~  203 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF  203 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222233333 3467788999988888888888888888866544 44443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.66  E-value=0.017  Score=53.17  Aligned_cols=97  Identities=24%  Similarity=0.318  Sum_probs=66.0

Q ss_pred             HHHHHhhhhhhhh----hhchhHHHHHHHHHHHHHH-HHhhhchhh-----------------hHHHHHHHHHhhhhhhc
Q 047275           48 GLIASLFASKVTR----ALGRKASILVGGVAFLAGS-ALGGAAFNV-----------------YMLILGRVLLGVGIGFS  105 (319)
Q Consensus        48 ~~ig~~~~g~l~d----r~GRr~~~~~~~~~~~~~~-~~~~~a~~~-----------------~~li~~R~l~Gig~g~~  105 (319)
                      +++-+++.|..+|    ||||||-++.+..+....+ ++.+.+.++                 ..++++--+.=++.-..
T Consensus        80 G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~  159 (498)
T KOG0637|consen   80 GLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTL  159 (498)
T ss_pred             cceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhh
Confidence            3444566777777    6999998887776655544 455655444                 23344444444555567


Q ss_pred             cchhhHHHHhcCCCCCCcc-hhhHHHHHHHHHHHHHHHHH
Q 047275          106 NQSVPLYLSEMAPPKHRGA-FNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       106 ~~~~~~~i~e~~p~~~Rg~-~~~~~~~~~~~G~~~~~~~~  144 (319)
                      ..++-++.+|...+++|-+ .++.+..+.++|..++...+
T Consensus       160 qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g  199 (498)
T KOG0637|consen  160 QGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG  199 (498)
T ss_pred             hhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence            7788899999987766665 88889998999877666554

>PTZ00207 hypothetical protein; Provisional

Probab=95.52  E-value=0.25  Score=47.97  Aligned_cols=135  Identities=9%  Similarity=-0.016  Sum_probs=82.8

Q ss_pred             HhHHHHHHHHHHHhhhhhhh---hh------hchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           40 FTSSPFIAGLIASLFASKVT---RA------LGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        40 ~~~~~~~g~~ig~~~~g~l~---dr------~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      +++..-++..+|-+..|.+.   .|      +.|--.+.+..+ ..++.++.+++..-..|.+.-++.|++.|..++...
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            44555555555555555544   22      222223444444 555555555553336899999999999999999999


Q ss_pred             HHHHhcCCCCCCcchhhHHHHHHHHHHHHH--HHHHhhccccC---------CCcchHHHHHhhHHHHHHHHHhccc
Q 047275          111 LYLSEMAPPKHRGAFNIGFQVCTAIGVLGA--NLLNYGTQKIK---------GGWGWRISLSMAAAPASILTLGALI  176 (319)
Q Consensus       111 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~--~~~~~~~~~~~---------~~~gWr~~f~~~~~~~~~~~~~~~~  176 (319)
                      ..++|.+- ++-|+.-....+...+|.++-  .+.+.+.+...         +..-.|.+|++....+....+....
T Consensus       475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            99999999 777875555566666764432  33343332111         1145788888776666655444333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.17  E-value=0.33  Score=42.00  Aligned_cols=72  Identities=17%  Similarity=0.319  Sum_probs=51.2

Q ss_pred             HHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH-HHHhcCCCCCCc
Q 047275           49 LIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL-YLSEMAPPKHRG  123 (319)
Q Consensus        49 ~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~-~i~e~~p~~~Rg  123 (319)
                      ++.+.+.|-++|+-|||+.-..-.+.++++ .++-.++.|..++++|.+.|++.+...+.--+ +++|.-  ++|+
T Consensus        86 mLFGtivgSLaDkqGRKracvtycitYiLs-CiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~  158 (454)
T KOG4332|consen   86 MLFGTIVGSLADKQGRKRACVTYCITYILS-CITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRG  158 (454)
T ss_pred             HHHHHHHHHHHhhhccccceeeehHHHHHH-HHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccC
Confidence            344445567899999999655444444433 33446789999999999999999988877644 677875  3444

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.80  E-value=0.18  Score=46.56  Aligned_cols=117  Identities=12%  Similarity=-0.021  Sum_probs=81.0

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhH-HHHHHHHHHHHHHHH----hhhchhhhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKA-SILVGGVAFLAGSAL----GGAAFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~-~~~~~~~~~~~~~~~----~~~a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++...++......+++++|+.+.|.+.||...-+ +.+.......++.+.    .-.-...+.+...-.+.|.+.-+.+|
T Consensus       299 ~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~P  378 (480)
T KOG2563|consen  299 EGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLP  378 (480)
T ss_pred             CccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCC
Confidence            4567889999999999999999999999966543 444444444444221    11123345677788889999999999


Q ss_pred             hhhHHHHhcC-CCCCCcchhhHHHHHHHHHHHHHHHHHhhccc
Q 047275          108 SVPLYLSEMA-PPKHRGAFNIGFQVCTAIGVLGANLLNYGTQK  149 (319)
Q Consensus       108 ~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~  149 (319)
                      ....+-.|.+ |..++...+-+...+...|.+.....+...+.
T Consensus       379 ig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~  421 (480)
T KOG2563|consen  379 IGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED  421 (480)
T ss_pred             cceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence            9888888885 76776654444555566666666666665443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.59  E-value=0.21  Score=46.80  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh----------chhhhHHHHHHHHHhhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA----------AFNVYMLILGRVLLGVG  101 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~----------a~~~~~li~~R~l~Gig  101 (319)
                      +++...+.......++.++|..++.+..-++.-|+++.++.++..+.++....          .++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            56666666666667777888888888888888899999988887777664221          12334444555667777


Q ss_pred             hhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHH
Q 047275          102 IGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIG  136 (319)
Q Consensus       102 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G  136 (319)
                      .+...-+....++|..|+..-|...++......+|
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg  366 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLG  366 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            77777778889999999999887544444444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.55  E-value=4.1  Score=38.11  Aligned_cols=44  Identities=9%  Similarity=-0.003  Sum_probs=31.7

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL   81 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~   81 (319)
                      +.....-.+..++.+...|.+.||..|.++...+++..-++-.+
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~   84 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAA   84 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHH
Confidence            34444455566777888899999999999988887766555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.48  E-value=4.4  Score=38.18  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=68.8

Q ss_pred             chhhHHhHHHHH-HHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc---------hh-----------------
Q 047275           35 QLLTTFTSSPFI-AGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA---------FN-----------------   87 (319)
Q Consensus        35 ~~~~~~~~~~~~-g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a---------~~-----------------   87 (319)
                      +....+-.-..+ ++++..++..++.++.-|.+++-..+..|...-++.++.         ++                 
T Consensus        61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~  140 (509)
T COG3202          61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW  140 (509)
T ss_pred             hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence            333344444444 667888889999999999999988888888777776653         11                 


Q ss_pred             ------hhHHHHHHHHHhhhhhhccc-hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhh
Q 047275           88 ------VYMLILGRVLLGVGIGFSNQ-SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYG  146 (319)
Q Consensus        88 ------~~~li~~R~l~Gig~g~~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  146 (319)
                            .|...+.-...=+=.....+ .-.....|....++-.++...++++..++.++++.+..+
T Consensus       141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~  206 (509)
T COG3202         141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW  206 (509)
T ss_pred             eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                  12222222222222122222 223455788877777788888888888887665544433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=93.77  E-value=0.42  Score=44.83  Aligned_cols=107  Identities=20%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchh-------HHHHHHHHHHHHHHHHhhhc----------hhhhHHHHHHHHHhh
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRK-------ASILVGGVAFLAGSALGGAA----------FNVYMLILGRVLLGV  100 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr-------~~~~~~~~~~~~~~~~~~~a----------~~~~~li~~R~l~Gi  100 (319)
                      +++.+...+.-++.+++..++-.+.+||       .-+-+++.+.+.+-++...+          .+.++++..-+++++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            3445555555555555555555554443       12344444444443332222          467899999999999


Q ss_pred             hhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 047275          101 GIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  144 (319)
                      |+=...|+..+++....|++-.+..++.+-+..+.|..++..++
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va  450 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVA  450 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceec
Confidence            99999999999999999999999888888888888876655443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.67  E-value=0.25  Score=45.46  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=58.7

Q ss_pred             hchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcc
Q 047275           84 AAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQ  148 (319)
Q Consensus        84 ~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~  148 (319)
                      +.++.|..++.-+..|+-.|+.+..+...+.|-.|+++|....+..+++-++|++++.+++...+
T Consensus       331 fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  331 FIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999998888876543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=93.27  E-value=0.64  Score=41.86  Aligned_cols=49  Identities=24%  Similarity=0.202  Sum_probs=32.3

Q ss_pred             HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHh
Q 047275          266 FRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM  315 (319)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~  315 (319)
                      .++.+.+..+...+.. .-.+.+.+.+.+.|.++||+|||+..++.+++-
T Consensus        61 Y~~yg~~~~qIa~Lf~-~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily  109 (354)
T PF05631_consen   61 YESYGFSEHQIAILFV-AGFASSAIFGTFVGSLADRYGRKKACLLFCILY  109 (354)
T ss_pred             HHHcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            4667777665443322 223445677778899999999999866655544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.77  E-value=3.1  Score=39.11  Aligned_cols=94  Identities=22%  Similarity=0.277  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhhhhhhh---hhhchhHHHHHHHHHHHHHHHHhhhc------------------hhhhHHHHHHHHHhhhh
Q 047275           44 PFIAGLIASLFASKVT---RALGRKASILVGGVAFLAGSALGGAA------------------FNVYMLILGRVLLGVGI  102 (319)
Q Consensus        44 ~~~g~~ig~~~~g~l~---dr~GRr~~~~~~~~~~~~~~~~~~~a------------------~~~~~li~~R~l~Gig~  102 (319)
                      .-+|..+++.+.+.++   +++||++.+..+..+..++.++.-+.                  +++..-.+.=+++|++-
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D  367 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD  367 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence            3445566666666666   56899998888888777776664332                  24567778889999999


Q ss_pred             hhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHH
Q 047275          103 GFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVL  138 (319)
Q Consensus       103 g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~  138 (319)
                      +......+.++.+.. |++|..+.++.-.-..++..
T Consensus       368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~  402 (461)
T KOG3098|consen  368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASC  402 (461)
T ss_pred             HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH
Confidence            999999999999999 56666555555555555543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.72  E-value=1.1  Score=42.22  Aligned_cols=33  Identities=15%  Similarity=0.100  Sum_probs=23.5

Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  144 (319)
                      ..-.+..+++++.+.+...++..+|...+..+-
T Consensus       142 WALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF  174 (544)
T PF13000_consen  142 WALTMLSPENVGYASTCQTVGQTAGYFLSFTVF  174 (544)
T ss_pred             hhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence            344556778889888888888888877665443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=92.50  E-value=5.7  Score=36.69  Aligned_cols=123  Identities=19%  Similarity=0.156  Sum_probs=72.3

Q ss_pred             HHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchh
Q 047275           47 AGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFN  126 (319)
Q Consensus        47 g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~  126 (319)
                      -.++--+++.+..+|..-+.=...+..+..++.++.+++++.+.=+++=.+.+++.|..-.....+.+ .+++..-+   
T Consensus        71 P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~~~l~---  146 (402)
T PF02487_consen   71 PSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGKSSLS---  146 (402)
T ss_pred             HHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCccccc---
Confidence            33444455666777776554455556677888888899999999889999999998888777777644 56654333   


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhccc
Q 047275          127 IGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALI  176 (319)
Q Consensus       127 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~  176 (319)
                       .++.+.+.+.+++.+....... . .++=|..+.+.....++..+..++
T Consensus       147 -~wssGTG~aGl~Ga~~y~~lT~-~-g~s~~~tll~~~~lp~~~~~~~f~  193 (402)
T PF02487_consen  147 -AWSSGTGGAGLVGALYYLGLTT-L-GLSPRTTLLIMLVLPAIFLLSYFF  193 (402)
T ss_pred             -cccCCcChhhHHHHHHHHHHHH-h-CcCHHHHHHHHHHHHHHHHHHHHH
Confidence             3333344333333333222222 1 133455555544443444444333

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=91.68  E-value=1.1  Score=42.25  Aligned_cols=78  Identities=19%  Similarity=0.219  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHhhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          237 RPQLVMAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      ++.+...+...++..+=  ....+-.|++.++.+++..+............-.++-+.+|+++||+|-|+.+.++.+...
T Consensus        26 ~~~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Ws  103 (511)
T TIGR00806        26 RVLVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFV  103 (511)
T ss_pred             hHHHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            34444444444444321  2344567777777887765522233333344456778899999999999998876665443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.22  E-value=1.8  Score=41.94  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=74.2

Q ss_pred             HHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhc---h----------------------hhhHHHHHHHHHhhhh
Q 047275           49 LIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAA---F----------------------NVYMLILGRVLLGVGI  102 (319)
Q Consensus        49 ~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a---~----------------------~~~~li~~R~l~Gig~  102 (319)
                      ...+++.+.++|. +||-+++.++.++..+|..+..++   +                      -...+..+..+..+|.
T Consensus        87 ~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~  166 (571)
T KOG1237|consen   87 FLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGA  166 (571)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheecc
Confidence            4666778888884 899999999988888875432221   1                      1136778888899999


Q ss_pred             hhccchhhHHHHhcCC---CCC-Cc--chhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHH
Q 047275          103 GFSNQSVPLYLSEMAP---PKH-RG--AFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAP  166 (319)
Q Consensus       103 g~~~~~~~~~i~e~~p---~~~-Rg--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~  166 (319)
                      |+.-+....+-+|-++   +++ +.  .+..-+......|.+....+-...   .+..+|.+-|.+....
T Consensus       167 gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi---q~~~~w~lgf~i~~~~  233 (571)
T KOG1237|consen  167 GGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI---QDNVGWKLGFGIPTVL  233 (571)
T ss_pred             CCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh---hhcccceeeccHHHHH
Confidence            9999999999999888   322 22  233344455566655444332222   2335677766554443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=90.70  E-value=1.3  Score=40.40  Aligned_cols=114  Identities=18%  Similarity=0.132  Sum_probs=86.3

Q ss_pred             ccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhc--hhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccch
Q 047275           31 KFNSQLLTTFTSSPFIAGLIASLFASKVTRALG--RKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~G--Rr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      .+++.+.+..-+..-+++.+......+..||..  -+-.+..++.+..-.-++.+.++....+..+-.+--+..+...+.
T Consensus       293 g~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~  372 (451)
T KOG2615|consen  293 GYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTC  372 (451)
T ss_pred             CCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHH
Confidence            345666666655556666666666667777766  666777777776666777778888888999999999998888888


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  144 (319)
                      ...++....|+++||..+++.....+++-.++++++
T Consensus       373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~  408 (451)
T KOG2615|consen  373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS  408 (451)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence            889999999999999988887777777655555554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=90.57  E-value=0.27  Score=48.43  Aligned_cols=75  Identities=19%  Similarity=0.104  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          242 MAILIPFFQQLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      .......+.+.........-.|.+.++.+.++.+.- +......+...++.++.+++.||.|||+.+.+|.+++.+
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            333334444443334444556677777777765432 334444556677888999999999999887666665544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.29  E-value=3.3  Score=38.87  Aligned_cols=92  Identities=11%  Similarity=0.043  Sum_probs=48.9

Q ss_pred             hhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCC---cchHHH--HH
Q 047275           87 NVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGG---WGWRIS--LS  161 (319)
Q Consensus        87 ~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~---~gWr~~--f~  161 (319)
                      .++..++.=++.|++.|...+....+.+. +|++.-+    ....+.+++.+++.++........+.   ..+...  |.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~~~~----a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPSTYSS----AVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHHHHH----HHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            56777788889999999999888888764 6655433    33444444433333322221111111   233332  33


Q ss_pred             hhHHHHHHHHHhcccccCChhh
Q 047275          162 MAAAPASILTLGALILPDTPNS  183 (319)
Q Consensus       162 ~~~~~~~~~~~~~~~l~es~~~  183 (319)
                      +..+..++.++....++..|..
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~~~  201 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLPFA  201 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHH
Confidence            3444444444445566666543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=89.92  E-value=4.1  Score=38.07  Aligned_cols=124  Identities=19%  Similarity=0.165  Sum_probs=77.4

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh---ch-------hhhHHHHHHHHHhhhh
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA---AF-------NVYMLILGRVLLGVGI  102 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~---a~-------~~~~li~~R~l~Gig~  102 (319)
                      ++...+.+-+...+.++.|.+.+.++.+|+|..+.=++++......-.++..   ++       +...|+.+=.+.=+|.
T Consensus       291 s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GL  370 (432)
T PF06963_consen  291 SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGL  370 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Confidence            4556666666677778899999999999999998877777655544433322   22       2222322222222333


Q ss_pred             hhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchH
Q 047275          103 GFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWR  157 (319)
Q Consensus       103 g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr  157 (319)
                      =+.=-...-++-|..|+++||..++.......+--+...++...... ..+++|-
T Consensus       371 W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~-P~~F~~l  424 (432)
T PF06963_consen  371 WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR-PSQFGWL  424 (432)
T ss_pred             HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC-hHhcChH
Confidence            23333445577899999999999888877777766666665543322 2335553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=88.99  E-value=1.7  Score=37.37  Aligned_cols=61  Identities=28%  Similarity=0.347  Sum_probs=44.1

Q ss_pred             hhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          255 INVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      .+.+..|.|.+-++.+.++.+...+ .....+.... ++..|.+.||+|.|..+++|++...+
T Consensus        18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l-~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen   18 TYTFSAYSPQLKSRLGYSQSQLNTL-STAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ccchhhhhHHHHHHhCCCHHHHHHH-HHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            4667889999999888887654422 2222233333 57889999999999999988887654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=86.30  E-value=0.61  Score=44.27  Aligned_cols=61  Identities=16%  Similarity=0.161  Sum_probs=44.8

Q ss_pred             hhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          255 INVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      ...+...++.++.+.|.+.+..- +....--++++.+.++.|+++||+-+|+.++.|..++.
T Consensus        27 ~g~l~pll~vy~kQLGl~p~~~G-tl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~   87 (618)
T KOG3762|consen   27 FGSLFPLLAVYFKQLGLNPAVVG-TLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLS   87 (618)
T ss_pred             ccccchHHHHHHHHcCCCHHHhh-hhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            34445667888899999876543 44444557889999999999999988777766665554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=85.45  E-value=4.8  Score=28.26  Aligned_cols=59  Identities=15%  Similarity=0.014  Sum_probs=40.2

Q ss_pred             HhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          257 VISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      .++..+|...++.+++..+.. .....+.+.-.+|.+...++.++..+++.+..+.+..+
T Consensus        10 ayTplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~   68 (85)
T PF06779_consen   10 AYTPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTV   68 (85)
T ss_pred             HHHhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            345677888888777765544 55666667777888888888887666666655554443

Note that many members are hypothetical proteins.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=85.28  E-value=2.1  Score=39.95  Aligned_cols=55  Identities=24%  Similarity=0.157  Sum_probs=37.1

Q ss_pred             HHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhhc
Q 047275          263 PVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFVS  318 (319)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~~  318 (319)
                      +.+.+..+.+.+. .++......+...+.++++|++.||+.|+.++.+|..+...+
T Consensus        57 ~~v~~~fni~~s~-~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A  111 (493)
T KOG1330|consen   57 KEVQTYFNISDSE-LGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA  111 (493)
T ss_pred             HHHHHhcCCCchh-ccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence            3333334444332 334444555667788999999999999999988887765543

>PRK03612 spermidine synthase; Provisional

Probab=85.22  E-value=24  Score=34.00  Aligned_cols=100  Identities=11%  Similarity=0.030  Sum_probs=48.9

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHH-HHHHHH-HHHHHh----hhc-hhhhHHHHHHHHHhhhhhhccchhh
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRKASILV-GGVAFL-AGSALG----GAA-FNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~-~~~~~~-~~~~~~----~~a-~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      +.+.+.+..|..+|+.+.+++.++--|+....- .+.+.. +...+.    +.. .....+...-++.|+-.|+..|...
T Consensus        53 ~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~  132 (521)
T PRK03612         53 STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLM  132 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777888999988887644333322111 111111 001010    111 1112234455677888888888877


Q ss_pred             HHHHhcCC---CCCCcchhhHHHHHHHHHH
Q 047275          111 LYLSEMAP---PKHRGAFNIGFQVCTAIGV  137 (319)
Q Consensus       111 ~~i~e~~p---~~~Rg~~~~~~~~~~~~G~  137 (319)
                      -+..+...   .+.-|+......++..+|.
T Consensus       133 ~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~  162 (521)
T PRK03612        133 RILQRIRDQHLGHNVATVLAADYLGALVGG  162 (521)
T ss_pred             HHHHhccccchhhhhhhhHhHHhHHHHHHH
Confidence            66655433   1222344444444444443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=81.90  E-value=38  Score=31.38  Aligned_cols=37  Identities=14%  Similarity=-0.014  Sum_probs=28.0

Q ss_pred             hhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCc
Q 047275           86 FNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRG  123 (319)
Q Consensus        86 ~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg  123 (319)
                      ..+...++.=.+.|.+.|..........++ .|++.-.
T Consensus       115 ~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq  151 (406)
T KOG1479|consen  115 GFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ  151 (406)
T ss_pred             hhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH
Confidence            466777888889999999888888877666 5666543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=80.60  E-value=9.6  Score=35.78  Aligned_cols=62  Identities=13%  Similarity=0.131  Sum_probs=53.7

Q ss_pred             hhhhHHHHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhc
Q 047275           86 FNVYMLILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGT  147 (319)
Q Consensus        86 ~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  147 (319)
                      ++-+..++.-++.|+..|-..+..+.+..+..++++|..++.+..++..+|...|..+++..
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888899999999999999999999999999999888888888888988888776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-14

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 33/222 (14%)
Query: 110 PLYLSEMAPPKHRG---AFNIGFQVCTAIGVLGANLLNYGTQKI-KGGW----GWRISLS 161
           P+Y++E+AP   RG   +FN   Q     G L    +NY   +     W    GWR   +
Sbjct: 148 PMYIAELAPAHIRGKLVSFN---QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204
Query: 162 MAAAPASILTLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVS 221
               PA +  +    +P++P  ++ R    E+A+ +L+++ G             A+   
Sbjct: 205 SECIPALLFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNT----------LATQAV 253
Query: 222 RTVKHPFQTIIQRKYRPQLVM--------AILIPFFQQLTGINVISFYAPVLFRTIKLSE 273
           + +KH       RK   +L+M         +++  FQQ  GINV+ +YAP +F+T+  S 
Sbjct: 254 QEIKHSLDH--GRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311
Query: 274 STSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILM 315
             +LL + ++ G ++   T+ +++  DK GRK L ++G + M
Sbjct: 312 DIALLQT-IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM 352

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	4e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 40  FTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSAL---GGAAFNVYMLILGRV 96
             S+ +    I  + A  + + L  KA I+ G   +  G+AL        N  + ++G  
Sbjct: 66  IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125

Query: 97  LLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLL 143
           ++  G+G    +   +++ + P           Q   + G + A + 
Sbjct: 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.92
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.86
2xut_A	524	Proton/peptide symporter family protein; transport	99.73
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.66
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.98
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.9
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.87
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.85
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.84
2xut_A	524	Proton/peptide symporter family protein; transport	98.16
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.85

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=9e-35  Score=272.74  Aligned_cols=278  Identities=24%  Similarity=0.426  Sum_probs=218.8

Q ss_pred             cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh------------------hchhhhHHHHHH
Q 047275           34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG------------------AAFNVYMLILGR   95 (319)
Q Consensus        34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~------------------~a~~~~~li~~R   95 (319)
                      +...+++++++++|.++|++++|+++||+|||++++++.+++.+++++++                  +++|+++++++|
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R  133 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR  133 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999988                  578999999999


Q ss_pred             HHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcccc-----CCCcchHHHHHhhHHHHHHH
Q 047275           96 VLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKI-----KGGWGWRISLSMAAAPASIL  170 (319)
Q Consensus        96 ~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~gWr~~f~~~~~~~~~~  170 (319)
                      +++|+|.|+..+..+++++|++|+++|++..+..+.+...|.+.+.+.++.....     .+.+.||+++.+..++.++.
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF  213 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence            9999999999999999999999999999999999999999988777766544322     22367999999999998888


Q ss_pred             HHhcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHH
Q 047275          171 TLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQ  250 (319)
Q Consensus       171 ~~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  250 (319)
                      .+..+++||||+|+..+++ .+++++.+++..++...+++..+..+.....++ .......   ...++........+++
T Consensus       214 ~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~  288 (491)
T 4gc0_A          214 LMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRK-TGGRLLM---FGVGVIVIGVMLSIFQ  288 (491)
T ss_dssp             HHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHH---SCCTHHHHHHHHHHHH
T ss_pred             hhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhh-hhhHHHH---hcccHHHHHHHHHHHH
Confidence            8888999999999998877 677778777776544333332222211111111 1111111   2234455667777888


Q ss_pred             hhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          251 QLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      +..+++.+.+|.|.+.+..+....... ..+.+.++..++++++++++.||+|||+.++.+...+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          289 QFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            888999999999999988877655433 556777888999999999999999999988777665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.92  E-value=1.8e-24  Score=200.05  Aligned_cols=260  Identities=16%  Similarity=0.071  Sum_probs=182.6

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh----chhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA----AFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~----a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      .++.+.+++.+...++..++++++|+++||+|||++++.+.+++.++.+++++    +++++.++++|+++|++.|...+
T Consensus        59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~  138 (451)
T 1pw4_A           59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP  138 (451)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccc
Confidence            35678899999999999999999999999999999999999999999999999    99999999999999999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHh-hccccCCCcc-hHHHHHhhHHHHHHH-HHhcccccCChhhH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNY-GTQKIKGGWG-WRISLSMAAAPASIL-TLGALILPDTPNSI  184 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~g-Wr~~f~~~~~~~~~~-~~~~~~l~es~~~~  184 (319)
                      ....+++|++|+++|++..+....+..+|.+++..++. ..+    .++ ||+.|.+.++..++. ++..+++||+|++.
T Consensus       139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  214 (451)
T 1pw4_A          139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA----WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC  214 (451)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH----HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence            99999999999999999999998888888766655543 222    256 999998877766553 34456789988753


Q ss_pred             HhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhh-hcc-cchhHHHHHHHHHHHHhhhhhhHhHhhh
Q 047275          185 IQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTI-IQR-KYRPQLVMAILIPFFQQLTGINVISFYA  262 (319)
Q Consensus       185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (319)
                      ..++.++.+.           +.+.+. +   .   +++.+.+.++. .+. .++++.+ ......+......+.+..+.
T Consensus       215 ~~~~~~~~~~-----------~~~~~~-~---~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  275 (451)
T 1pw4_A          215 GLPPIEEYKN-----------DYPDDY-N---E---KAEQELTAKQIFMQYVLPNKLLW-YIAIANVFVYLLRYGILDWS  275 (451)
T ss_dssp             CCCSCTTTCC-----------C--------------------CCTHHHHHHTSSCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhhcc-----------cccccc-h---h---hhhcccccccchHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            2211110000           000000 0   0   00011122221 111 1223333 33333444444556677788


Q ss_pred             HHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHhhHHh
Q 047275          263 PVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKL--GRKVLFLVGGILM  315 (319)
Q Consensus       263 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~g~~~~  315 (319)
                      |.++++ .+.+... ........++..+++.++.+++.||+  |||+.++.+..++
T Consensus       276 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          276 PTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHBTTBSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            888776 5555443 34556667788899999999999999  9998876665443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=1.7e-23  Score=192.94  Aligned_cols=250  Identities=12%  Similarity=0.112  Sum_probs=175.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh---hhchhhhHHHHHHHHHhhhhhhccch
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG---GAAFNVYMLILGRVLLGVGIGFSNQS  108 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~---~~a~~~~~li~~R~l~Gig~g~~~~~  108 (319)
                      .+..+.+++.+...++..+++++.|+++||+|||++++.+.+++.++.++.   +.+++++.++++|+++|++.|...+.
T Consensus        58 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  137 (438)
T 3o7q_A           58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA  137 (438)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhh
Confidence            456788999999999999999999999999999999999999999999998   88899999999999999999999999


Q ss_pred             hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcc-ccCCC----------------cc------hHHHHHhhHH
Q 047275          109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQ-KIKGG----------------WG------WRISLSMAAA  165 (319)
Q Consensus       109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~----------------~g------Wr~~f~~~~~  165 (319)
                      ...+++|++|+++|++..+..+.+..+|.+++..+..... ...+.                |+      ||+.|.+.+.
T Consensus       138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  217 (438)
T 3o7q_A          138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVA  217 (438)
T ss_dssp             HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHH
Confidence            9999999999999999888899889998777766554332 22111                11      9999876655


Q ss_pred             HHHHHHHh--cccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHH
Q 047275          166 PASILTLG--ALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMA  243 (319)
Q Consensus       166 ~~~~~~~~--~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  243 (319)
                      ...+..+.  ....||+++...   ++++           +.+                 .+++++++++.   ++....
T Consensus       218 ~~~~~~~~~~~~~~p~~~~~~~---~~~~-----------~~~-----------------~~~~~~~~~~~---~~~~~~  263 (438)
T 3o7q_A          218 IVLLVALLIMLTKFPALQSDNH---SDAK-----------QGS-----------------FSASLSRLARI---RHWRWA  263 (438)
T ss_dssp             HHHHHHHHHHHCCCCCCTTTCC---CCSS-----------TTS-----------------HHHHHHHHTTC---SHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccc---cccc-----------ccc-----------------hhhhHHHHHhC---hHHHHH
Confidence            54443332  233566653210   0000           000                 01112233322   222222


Q ss_pred             HHHHHHHhhhhhhHhHhhhHHH-HHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275          244 ILIPFFQQLTGINVISFYAPVL-FRTI-KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV  317 (319)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~  317 (319)
                      . ...+........+..|.|.+ +++. +.+... ......+..+..+++.++.+++.||+|||+++..+..++.+
T Consensus       264 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~  337 (438)
T 3o7q_A          264 V-LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF-AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA  337 (438)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHhhhccCCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            2 22222333345555677777 7665 655443 33555566778889999999999999999988776665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.88  E-value=3.2e-22  Score=180.96  Aligned_cols=245  Identities=15%  Similarity=0.204  Sum_probs=175.3

Q ss_pred             hhhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHH
Q 047275           12 FFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYML   91 (319)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~l   91 (319)
                      .+.+.++.+.+|.+      .++.+.+++.+...++..+++++.|+++||+|||+++..+.....++.++.+++++++.+
T Consensus        18 ~~~~~~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l   91 (375)
T 2gfp_A           18 IYIPAIADMARDLN------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVL   91 (375)
T ss_dssp             HHHHHHHHHHTTSS------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            33444444444544      356788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH
Q 047275           92 ILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT  171 (319)
Q Consensus        92 i~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  171 (319)
                      ++.|+++|++.+...+....++.|++|+++|++..+....+..+|...+..++...   .+.++||+.|.+.++..++..
T Consensus        92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A           92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL---DTMWNWRACYLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHhccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887776665433   234689999988777766655


Q ss_pred             H-hcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHH
Q 047275          172 L-GALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQ  250 (319)
Q Consensus       172 ~-~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  250 (319)
                      + ..+.+||++++..   + +                              ++.+++++++++   +|+..... ...+.
T Consensus       169 ~~~~~~~~~~~~~~~---~-~------------------------------~~~~~~~~~~~~---~~~~~~~~-~~~~~  210 (375)
T 2gfp_A          169 FSMARWMPETRPVDA---P-R------------------------------TRLLTSYKTLFG---NSGFNCYL-LMLIG  210 (375)
T ss_dssp             CCCCCSSCCCSTTTC---C-C------------------------------CCTTTCSTHHHH---HHHHHHHH-HHHHH
T ss_pred             HHHHHHCcccCCCCc---c-c------------------------------ccHHHHHHHHhc---CcchHHHH-HHHHH
Confidence            4 4566788765311   0 0                              001112222322   12222222 22233


Q ss_pred             hhhhhhHhHhhhHHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047275          251 QLTGINVISFYAPVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGR  304 (319)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr  304 (319)
                      .....+.+..+.|.++++ .+.+... ........++..+++.++.+++.||.||
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          211 GLAGIAAFEACSGVLMGAVLGLSSMT-VSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHHHHHHHHHHCSCSSHHHHHHHHHH-HHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445555666666554 4544332 3344555667777888888888888877

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.86  E-value=1.1e-20  Score=176.83  Aligned_cols=136  Identities=18%  Similarity=0.225  Sum_probs=114.8

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP  110 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~  110 (319)
                      .+..+.+++.+...++..+++++.|+++|| +|||+++..+.+++.++.+++++++|++.++++|+++|++.|...+...
T Consensus        51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  130 (491)
T 4aps_A           51 ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVS  130 (491)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHH
Confidence            456888899999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCC--CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHH
Q 047275          111 LYLSEMAPPKH--RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASIL  170 (319)
Q Consensus       111 ~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~  170 (319)
                      .+++|++|+++  |+...+..+.+..+|..++..+...+.   +.+|||+.|.+.++..++.
T Consensus       131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g~~~~f~~~~~~~~~~  189 (491)
T 4aps_A          131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ---EAAGYHVAFSLAAIGMFIG  189 (491)
T ss_dssp             HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHH
Confidence            99999999998  555666666777777666554443322   2368999998876654443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.73  E-value=3.8e-17  Score=154.11  Aligned_cols=138  Identities=14%  Similarity=0.152  Sum_probs=115.5

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHHHHHHHHhhhch-hhhHHHHHHHHHhhhhhhccchh
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL-GRKASILVGGVAFLAGSALGGAAF-NVYMLILGRVLLGVGIGFSNQSV  109 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~~~~~~~~~a~-~~~~li~~R~l~Gig~g~~~~~~  109 (319)
                      .++.+.+++.+...++..+++++.|+++||+ |||+++..+.++..++.++.++++ +++.++++|+++|++.|...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            4567888999999999999999999999999 999999999999999999999998 99999999999999999999999


Q ss_pred             hHHHHhcCCCCCCcchhhH---HHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275          110 PLYLSEMAPPKHRGAFNIG---FQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL  172 (319)
Q Consensus       110 ~~~i~e~~p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  172 (319)
                      ..+++|++|+++|++..+.   ...+..+|...+..+...+.   +.++||+.|.+.++..++..+
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~f~~~~~~~~~~~~  193 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL---KNFGAAVAFGIPGVLMFVATV  193 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH---HTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999876655   66666666655554433222   236899999887766554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.66  E-value=1e-16  Score=147.29  Aligned_cols=248  Identities=11%  Similarity=0.065  Sum_probs=130.1

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHH---Hhhhchhh-hHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSA---LGGAAFNV-YMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~---~~~~a~~~-~~li~~R~l~Gig~g~~~~  107 (319)
                      .++.+.+.+.+...++..++++++|+++||+|||++++.+...+.++..   ...+++.. ..+...|++.|++.|...+
T Consensus        40 ~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  119 (417)
T 2cfq_A           40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN  119 (417)
T ss_dssp             CCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567788999999999999999999999999999999988877655321   11222221 1245667777777666555


Q ss_pred             hhhHHHHhcCCC--CCCcchhhHH----HHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 047275          108 SVPLYLSEMAPP--KHRGAFNIGF----QVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTP  181 (319)
Q Consensus       108 ~~~~~i~e~~p~--~~Rg~~~~~~----~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~  181 (319)
                      .....+.++.++  ++|+...+..    .++..+|..++..+   .+     ++||+.|++.+++.++..+..+..+|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l---~~-----~~~~~~f~~~~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM---FT-----INNQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH---HH-----HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred             hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH---HH-----hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence            444444444433  3344322222    33333433322222   11     4699999887766544444444555443


Q ss_pred             hhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhh
Q 047275          182 NSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFY  261 (319)
Q Consensus       182 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (319)
                      ++.. +.+++++        .+.++                ...+.++++++   .++.+..... .+.....+.....+
T Consensus       192 ~~~~-~~~~~~~--------~~~~~----------------~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~  242 (417)
T 2cfq_A          192 PSSA-TVANAVG--------ANHSA----------------FSLKLALELFR---QPKLWFLSLY-VIGVSCTYDVFDQQ  242 (417)
T ss_dssp             SCSS-CSSSSSS--------SCCCC----------------CCHHHHHHHTT---CHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             cccc-ccccccc--------ccccc----------------ccHHHHHHHhc---CCchhhHHHH-HHHHHHHHHHHHHH
Confidence            2100 0000000        00000                00001122222   1222222222 11111222333344


Q ss_pred             hHHHHHhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275          262 APVLFRTIKLSE---STSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF  316 (319)
Q Consensus       262 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~  316 (319)
                      .|.++.+.....   .........+..+...++.++.++++||+|||+++..+..++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence            565554432111   1122333445556677889999999999999998776665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.98  E-value=4.5e-09  Score=96.47  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=107.4

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh--chhHHHHHHHHHHH-HHHHHhhhc--hhhhHHHHHHHHHhhhhhhcc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL--GRKASILVGGVAFL-AGSALGGAA--FNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~--GRr~~~~~~~~~~~-~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~  106 (319)
                      .+..+.+.+.+...++..++.++.|++.||+  |||+.+..+..+.. ++.++..+.  .+.+.+.+.-++.|++.++..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  364 (451)
T 1pw4_A          285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV  364 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchH
Confidence            3456677788888889999999999999999  99999888877766 555555555  477888889999999999999


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHH-HHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHHHHHh
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAI-GVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASILTLG  173 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~  173 (319)
                      +....++.|.+|+++||...+.......+ |..++..+ ++..+    ..||+..|.+.++..++..+.
T Consensus       365 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~----~~g~~~~~~~~~~~~~~~~~~  429 (451)
T 1pw4_A          365 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD----FFGWDGGFMVMIGGSILAVIL  429 (451)
T ss_dssp             HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHH
Confidence            99899999999999999988888877777 76555433 33332    357888887766655554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.90  E-value=2.8e-09  Score=97.52  Aligned_cols=141  Identities=13%  Similarity=0.096  Sum_probs=101.3

Q ss_pred             hHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcC
Q 047275           38 TTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMA  117 (319)
Q Consensus        38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~  117 (319)
                      +...+...++..++.++.|++.||+|||+.+..+..+..++..+.++.++.+.+++..++.|++.+...+....+++|..
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            44455556677888999999999999999999888888887777777788888888888999988877777888999999


Q ss_pred             CCCCCcchhhH-HHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChh
Q 047275          118 PPKHRGAFNIG-FQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPN  182 (319)
Q Consensus       118 p~~~Rg~~~~~-~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~  182 (319)
                      |++.||...+. .+....+|...+. +.++..+    .+||+..|.+.++..++..+. ....||.++
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----SIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            99999986555 3444555543333 3333322    256888887766655554333 444565543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.87  E-value=1.1e-08  Score=95.25  Aligned_cols=142  Identities=14%  Similarity=0.057  Sum_probs=83.4

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-----hhhhHHH-HHHHHHhhhhhhccchhhHH
Q 047275           39 TFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-----FNVYMLI-LGRVLLGVGIGFSNQSVPLY  112 (319)
Q Consensus        39 ~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-----~~~~~li-~~R~l~Gig~g~~~~~~~~~  112 (319)
                      ..+....+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...++ +.-+..+.+ .+..+....+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  394 (491)
T 4gc0_A          316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA-MSWGPVCWVL  394 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence            34445556778899999999999999999988888777766554332     1222222 222222333 2334566789


Q ss_pred             HHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccc--cCCCcchHHHHHhhHHHHHH-HHHhcccccCCh
Q 047275          113 LSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQK--IKGGWGWRISLSMAAAPASI-LTLGALILPDTP  181 (319)
Q Consensus       113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~--~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~  181 (319)
                      .+|.+|.+.|+...++.....-+|..+.. ..+.....  .....++.+.|.+.+..+++ ..+.++++||+.
T Consensus       395 ~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          395 LSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            99999999999877666555545433322 22222110  01113344555554544444 334567899983

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.85  E-value=2e-08  Score=93.39  Aligned_cols=131  Identities=11%  Similarity=-0.053  Sum_probs=95.5

Q ss_pred             chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHH-----HHHHHHHHHHHHhhhch---------hhhHHHHHHHHHhh
Q 047275           35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASIL-----VGGVAFLAGSALGGAAF---------NVYMLILGRVLLGV  100 (319)
Q Consensus        35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~-----~~~~~~~~~~~~~~~a~---------~~~~li~~R~l~Gi  100 (319)
                      ...+...+...++..++.++.+++.||+|||+...     .+.++..++..+.+...         +.+.+++.-++.|+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  398 (491)
T 4aps_A          319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL  398 (491)
T ss_dssp             SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH
T ss_pred             cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence            34555666677788889999999999999986554     66666666665555432         77788888999999


Q ss_pred             hhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          101 GIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       101 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      +.+...+....++.|.+|++.||...+.......+|..++..+.....+    .++...|.+.+...++
T Consensus       399 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~  463 (491)
T 4aps_A          399 GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----KSEVAYFSYFGLGSVV  463 (491)
T ss_dssp             HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG----SSTTHHHHHTHHHHHH
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888888887766655443332    2444555554444343

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.84  E-value=2e-08  Score=91.79  Aligned_cols=132  Identities=8%  Similarity=-0.010  Sum_probs=97.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL  111 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~  111 (319)
                      .+..+.+.+.+...+++.++.++.|++.||+|||+.+..+.++..++.++..+.++.+.++.. ++.|++.+...+....
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~  370 (438)
T 3o7q_A          292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFS  370 (438)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHH
Confidence            345677788888888999999999999999999999999999998888888888887766655 8999999999999999


Q ss_pred             HHHhcCCCCCCcchhhHHHHHHHHHHH-HHHHHHhhccccCCCcc-hHHHHHhhHHHHHHH
Q 047275          112 YLSEMAPPKHRGAFNIGFQVCTAIGVL-GANLLNYGTQKIKGGWG-WRISLSMAAAPASIL  170 (319)
Q Consensus       112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~  170 (319)
                      +..|..|++ |+...+.... ..+|.. ...+.++..+    ..| ++..|.+..+..++.
T Consensus       371 ~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~~g~l~~----~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          371 LGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSD----AAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHSSCGGG-HHHHHHHHHH-TTHHHHHHHHHHHHHHH----HHTSSGGGGHHHHHHHHHH
T ss_pred             HHHhhcccc-ccchhhHHHH-HHHHHHHHHHHHHHHHH----HhcchHHHHHHHHHHHHHH
Confidence            999999976 6665544443 234433 3333333332    245 777777655444333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.16  E-value=4.6e-06  Score=78.06  Aligned_cols=103  Identities=17%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhhhhhhh----hhhchh----HHHHHHHHHHHHHHHHhhhc---------hhhhHHHHHHHHHhhhhhh
Q 047275           42 SSPFIAGLIASLFASKVT----RALGRK----ASILVGGVAFLAGSALGGAA---------FNVYMLILGRVLLGVGIGF  104 (319)
Q Consensus        42 ~~~~~g~~ig~~~~g~l~----dr~GRr----~~~~~~~~~~~~~~~~~~~a---------~~~~~li~~R~l~Gig~g~  104 (319)
                      ....++..++..+.+++.    ||.|||    +.+..+.++..++.++.++.         .+.+.+++.-++.|++.+.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  421 (524)
T 2xut_A          342 ALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVL  421 (524)
T ss_dssp             TTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHH
Confidence            333445556666666654    555443    45666777777776666553         3677888899999999999


Q ss_pred             ccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 047275          105 SNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN  144 (319)
Q Consensus       105 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  144 (319)
                      ..+....++.|.+|+++||...+.......+|..++..+.
T Consensus       422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~  461 (524)
T 2xut_A          422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN  461 (524)
T ss_dssp             HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888888888866655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.85  E-value=3.1e-06  Score=75.59  Aligned_cols=126  Identities=17%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHH-HHHHHHHhhh----chhhhHHHHHHHHHhhhhhhccc
Q 047275           33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVA-FLAGSALGGA----AFNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~-~~~~~~~~~~----a~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++.+.+.+.+...++..++.++.+++.||+||+  +..+... ...+..+...    .++.+.+++.-++.|++.+...+
T Consensus       233 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  310 (375)
T 2gfp_A          233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFP  310 (375)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhH
Confidence            345666777777888899999999999999983  2333332 2222221111    23777788899999999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAA  164 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~  164 (319)
                      ....++.|..| ++||+..+.......+|...+..+.   +.+.+..+|+..+.+..
T Consensus       311 ~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~---g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          311 LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS---AMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC---THHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH---HHHhcCCcccHHHHHHH
Confidence            99999999998 8899888887776666654433221   11112245666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.57
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.14
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.64

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.2e-24  Score=192.31  Aligned_cols=256  Identities=17%  Similarity=0.065  Sum_probs=169.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc----hhhhHHHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA----FNVYMLILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a----~~~~~li~~R~l~Gig~g~~~~  107 (319)
                      ++..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++++++    .+++.+++.|+++|++.|...+
T Consensus        56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  135 (447)
T d1pw4a_          56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP  135 (447)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhh
Confidence            467889999999999999999999999999999999999999999999888776    4788999999999999999999


Q ss_pred             hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHh-hccccCCCcchHHHHHhhHHHHHHHHH-hcccccCChhhHH
Q 047275          108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNY-GTQKIKGGWGWRISLSMAAAPASILTL-GALILPDTPNSII  185 (319)
Q Consensus       108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~es~~~~~  185 (319)
                      ....+++|++|+++|++..+..+.+..+|..++..... ....   ..+||+.|.+.+...++..+ ...+++|+|+...
T Consensus       136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (447)
T d1pw4a_         136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG  212 (447)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTC
T ss_pred             HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh---hhcccccchhhhhhHHHHHHHHHHhcccchhhcc
Confidence            99999999999999999998888888888665544332 2221   13699988877766555443 4455666665432


Q ss_pred             hccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhhhHHH
Q 047275          186 QRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFYAPVL  265 (319)
Q Consensus       186 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (319)
                      ....++.+.           +..++..+   ..+.+   ....+...+...+++..+......+......+....+.|.+
T Consensus       213 ~~~~~~~~~-----------~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (447)
T d1pw4a_         213 LPPIEEYKN-----------DYPDDYNE---KAEQE---LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY  275 (447)
T ss_dssp             CCSCTTTCC-----------C-------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhh-----------hcccchhh---ccccc---cchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhh
Confidence            211110000           00000000   00000   00001111111122222333333333444455666777777


Q ss_pred             HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q 047275          266 FRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVL  307 (319)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  307 (319)
                      +++....+.........+..+..+++.++.+++.||++||+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  317 (447)
T d1pw4a_         276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR  317 (447)
T ss_dssp             BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred             cccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccc
Confidence            765444333344455667778888999999999999998754

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.7e-15  Score=134.26  Aligned_cols=148  Identities=10%  Similarity=-0.017  Sum_probs=94.7

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhH----HHHHHHHHhhhhhhccc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYM----LILGRVLLGVGIGFSNQ  107 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~----li~~R~l~Gig~g~~~~  107 (319)
                      .++.+.+++.+...++..+++++.|+++||+|||++++++.....++..+..+..+...    ..+.+.+.|.+.+....
T Consensus        40 ~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (417)
T d1pv7a_          40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN  119 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhccccccc
Confidence            45688999999999999999999999999999999999999998888887777655544    45666666666666666


Q ss_pred             hhhHHHHhcCCCC--CCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhH-HHHHHHHHhcccccCChhh
Q 047275          108 SVPLYLSEMAPPK--HRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAA-APASILTLGALILPDTPNS  183 (319)
Q Consensus       108 ~~~~~i~e~~p~~--~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~-~~~~~~~~~~~~l~es~~~  183 (319)
                      .......+..+++  ++.............+...+..++....    .++|+..+.... ...+...+..+..+|+++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T d1pv7a_         120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF----TINNQFVFWLGSGCALILAVLLFFAKTDAPSS  194 (417)
T ss_dssp             THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred             chhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc----cccccccccchhhHHHHHHHHHHHHhcccccc
Confidence            6555544444332  2233333344444444443333322221    135655554443 3434444556667777653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=4.5e-11  Score=105.11  Aligned_cols=140  Identities=13%  Similarity=0.106  Sum_probs=108.7

Q ss_pred             hhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHh
Q 047275           36 LLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSE  115 (319)
Q Consensus        36 ~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e  115 (319)
                      ..........++..++..+.+++.||+|||+.+..+.++..++.++..+.++.+.+++.-++.|++.+...+....++.|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  339 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS  339 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566667778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcchhhH-HHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccC
Q 047275          116 MAPPKHRGAFNIG-FQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPD  179 (319)
Q Consensus       116 ~~p~~~Rg~~~~~-~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~e  179 (319)
                      .+|+++||+..+. ..+...+|..++. +.++..    +..||+..|.+.++..++..+. .+.+++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY----ESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999987665 3455556654443 333433    2368999887766655554443 334433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=1.1e-07  Score=84.58  Aligned_cols=134  Identities=16%  Similarity=0.091  Sum_probs=92.9

Q ss_pred             cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHH---HHHH--hhhchhhhHHHHHHHHHhhhhhhcc
Q 047275           32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLA---GSAL--GGAAFNVYMLILGRVLLGVGIGFSN  106 (319)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~---~~~~--~~~a~~~~~li~~R~l~Gig~g~~~  106 (319)
                      .+....+.......++..++.++.|++.||++||+..........+   +..+  .....+.+..++.=++.|++.++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  361 (447)
T d1pw4a_         282 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV  361 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHH
T ss_pred             cccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence            3456677778888888899999999999999987644333332222   2222  2224567778888889999999999


Q ss_pred             chhhHHHHhcCCCCCCcchhhHHHHHHHH-HHHHHHH-HHhhccccCCCcchHHHHHhhHHHHHH
Q 047275          107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAI-GVLGANL-LNYGTQKIKGGWGWRISLSMAAAPASI  169 (319)
Q Consensus       107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~~~~~-~~~~~~~~~~~~gWr~~f~~~~~~~~~  169 (319)
                      +....++.|.+|++.||...+.......+ |.+.+.. .++..    +..||+..|.+.....++
T Consensus       362 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~----~~~g~~~~~~~~~~~~~~  422 (447)
T d1pw4a_         362 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV----DFFGWDGGFMVMIGGSIL  422 (447)
T ss_dssp             HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhChHHHHHHHHHHHHH
Confidence            99999999999999999887776655444 4444433 33333    346898887765554444