Citrus Sinensis ID: 047287

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MYSFSLITPCENLISMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLPC
Secondary Structure (PSIPRED)
cEEEcccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mysfslitpcENLISMVKTLERYqkcnygapepnvsAREALELSSQQEYLKLKARYEALQRSQRNLlgeelgplnskELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQvntlqlnpsaedcgyglkpaqpqgdtffhaleceptlqigyqpadpisvvtagpslnnymqgwlpc
Flexible Loop (DISEMBL)
mysfslitpceNLISMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRnllgeelgplnskELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLPC
Low Complexity Region (SEG)
MYSFSLITPCENLISMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLPC
Disordered region (IsUnstruct)
***FSLITPCENLISMVKTLERYQKCNYG**********************************************************************YMLDTL********************TMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGW***
Disordered Region (DISOPRED)
MYSFSLITPCENLISMVKTLERYQK********************QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ***************************************************ECEPTLQI********************MQGWLPC
Disordered Region (DISEMBL)
MYSFSLITPCENLISMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLPC
Disordered Region (DISPRO)
MYSFSLI*****LISMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRH***AG*Q******************************DTFFHALECEPTLQIGYQPADPISV********N*MQGWLPC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYSFSLITPCENLISMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKExxxxxxxxxxxxxxxxxxxxxYMLDTxxxxxxxxxxxxxxxxxxxxxTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLPC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q03489	241	Agamous-like MADS-box pro	N/A	no	0.857	0.746	0.733	3e-73
O65874	247	MADS-box transcription fa	N/A	no	0.861	0.732	0.685	7e-70
O22456	251	Developmental protein SEP	yes	no	0.852	0.713	0.62	2e-57
O04067	254	Agamous-like MADS-box pro	N/A	no	0.857	0.708	0.613	2e-56
Q38694	250	Agamous-like MADS-box pro	N/A	no	0.847	0.712	0.593	8e-54
Q42464	224	Agamous-like MADS-box pro	N/A	no	0.566	0.531	0.772	3e-49
P29384	250	Developmental protein SEP	no	no	0.857	0.72	0.485	6e-41
Q0J466	249	MADS-box transcription fa	yes	no	0.876	0.738	0.492	2e-39
P0C5B0	249	MADS-box transcription fa	N/A	no	0.876	0.738	0.492	2e-39
P29382	251	Developmental protein SEP	no	no	0.866	0.725	0.467	5e-38

>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2

 Score =  274 bits (701), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/195 (73%), Positives = 156/195 (80%), Gaps = 15/195 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPE N+S REALE+SSQQEYLKLKARYEALQRSQRNLLGE+LGPL
Sbjct: 62  SMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           NSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQR         
Sbjct: 122 NSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQR--------- 172

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
               LMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V 
Sbjct: 173 ----LMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQN-DPITVG 226

Query: 195 TAGPSLNNYMQGWLP 209
            AGPS+NNYM GWLP
Sbjct: 227 GAGPSVNNYMAGWLP 241

Probable transcription factor.
Petunia hybrida (taxid: 4102)

>sp|O65874|MTF1_PEA MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1

 Score =  263 bits (671), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 155/200 (77%), Gaps = 19/200 (9%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELG 72
           SM+KTLERYQKCNYGAPE NV+++EAL  ELSSQQEYLKLKARYE+LQRSQRNL+GE+LG
Sbjct: 62  SMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLG 121

Query: 73  PLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 132
           PL+SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR       
Sbjct: 122 PLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR------- 174

Query: 133 DFAGLQLMEGYQVNTLQLNPSAEDCGYGLKP-AQPQGDTFFHA--LECEPTLQIGYQPAD 189
                  MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   D
Sbjct: 175 -------MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGD 227

Query: 190 PISVVTAGPSLNNYMQGWLP 209
           P SVVTAGPS+NNYM GWLP
Sbjct: 228 PGSVVTAGPSMNNYMGGWLP 247

Probable transcription factor.

Pisum sativum (taxid: 3888)

>sp|O22456|SEP3_ARATH Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 146/200 (73%), Gaps = 21/200 (10%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELG 72
           SM++TLERYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGE+LG
Sbjct: 62  SMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLG 121

Query: 73  PLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 132
           PL++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+         
Sbjct: 122 PLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLR--------- 172

Query: 133 DFAGLQLMEGYQVNTLQLNPSAEDC---GYGLKPAQPQGDTFFHALECEPTLQIGYQPAD 189
               L+L +GYQ+  LQLNP+ E+    G      Q     FF  LECEP LQIGYQ   
Sbjct: 173 ----LRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ 227

Query: 190 PISVVTAGPSLNNYMQGWLP 209
               + AGPS+NNYM GWLP
Sbjct: 228 --DGMGAGPSVNNYMLGWLP 245

Probable transcription factor active in inflorescence development and floral organogenesis. Functions with SEPALLATA1/AGL2 and SEPALLATA2/AGL4 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Interacts with APETALA1, AGAMOUS or APETALA3/PISTILLATA to form complexes, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|O04067|AGL9_SINAL Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1

 Score =  218 bits (556), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/202 (61%), Positives = 147/202 (72%), Gaps = 22/202 (10%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELG 72
           SM++TLERYQKCNYG PEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGE+LG
Sbjct: 62  SMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLG 121

Query: 73  PLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 132
           PL++KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+         
Sbjct: 122 PLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLR--------- 172

Query: 133 DFAGLQLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPTLQIGYQP 187
               L+L +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ 
Sbjct: 173 ----LRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQ- 226

Query: 188 ADPISVVTAGPSLNNYMQGWLP 209
                 + AGPS NNYM GWLP
Sbjct: 227 GQQDHGMEAGPSENNYMLGWLP 248

Probable transcription factor active in inflorescence development and floral organogenesis.

Sinapis alba (taxid: 3728)

>sp|Q38694|AGL9_ARADE Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1

 Score =  209 bits (533), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 117/197 (59%), Positives = 139/197 (70%), Gaps = 19/197 (9%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLE+YQKCN+G+PE  + +RE    SSQQEYLKLK R EALQRSQRNLLGE+LGPL
Sbjct: 62  SMLKTLEKYQKCNFGSPESTIISRETQ--SSQQEYLKLKNRVEALQRSQRNLLGEDLGPL 119

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
            SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R         
Sbjct: 120 GSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRR--------- 170

Query: 135 AGLQLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPIS 192
                 E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEPTLQIGY     ++
Sbjct: 171 ----FEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMA 226

Query: 193 VVTAGPSLNNYM-QGWL 208
             TA  ++NNYM  GWL
Sbjct: 227 TATAS-TVNNYMPPGWL 242

Probable transcription factor active in inflorescence development and floral organogenesis.

Aranda deborah (taxid: 29714)

>sp|Q42464|AGL9_SOLLC Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 110/132 (83%), Gaps = 13/132 (9%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPEPN+S REALE+SSQQEYLKLK RYEALQRSQRNLLGE+LGPL
Sbjct: 62  SMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           NSKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQR         
Sbjct: 122 NSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQR--------- 172

Query: 135 AGLQLMEGYQVN 146
               LMEG Q+N
Sbjct: 173 ----LMEGSQLN 180

Probable transcription factor active in inflorescence development and floral organogenesis.

Solanum lycopersicum (taxid: 4081)

>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1

 Score =  167 bits (422), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 129/202 (63%), Gaps = 22/202 (10%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           +M+KTLERYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGE+LGPL
Sbjct: 62  NMLKTLERYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRH 131
           NSKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +    + +RH
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query: 132 ADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---A 188
               G     G++          ++  YG   A  QG   + +LEC+PTLQIGY     +
Sbjct: 181 HHIGG-----GWE------GGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCS 227

Query: 189 DPISVVTAGPSL--NNYMQGWL 208
           + ++V   G S   N Y+ GW+
Sbjct: 228 EQMAVTVQGQSQQGNGYIPGWM 249

Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/199 (49%), Positives = 130/199 (65%), Gaps = 15/199 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALEL-SSQQEYLKLKARYEALQRSQRNLLGEELGP 73
           SM KTLE+YQKC+Y  PE  V  RE+ +L +S+ EYLKLKAR E LQR+QRNLLGE+L  
Sbjct: 62  SMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDS 121

Query: 74  LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAD 133
           L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H  
Sbjct: 122 LGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV- 180

Query: 134 FAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADP 190
             G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+ 
Sbjct: 181 -RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEH 231

Query: 191 ISVVTAGPSLNNYMQGWLP 209
              + +   +N YM  WLP
Sbjct: 232 HEAMNSA-CMNTYMPPWLP 249

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C5B0|MADS7_ORYSI MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/199 (49%), Positives = 130/199 (65%), Gaps = 15/199 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALEL-SSQQEYLKLKARYEALQRSQRNLLGEELGP 73
           SM KTLE+YQKC+Y  PE  V  RE+ +L +S+ EYLKLKAR E LQR+QRNLLGE+L  
Sbjct: 62  SMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDS 121

Query: 74  LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAD 133
           L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H  
Sbjct: 122 LGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV- 180

Query: 134 FAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADP 190
             G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+ 
Sbjct: 181 -RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEH 231

Query: 191 ISVVTAGPSLNNYMQGWLP 209
              + +   +N YM  WLP
Sbjct: 232 HEAMNSA-CMNTYMPPWLP 249

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P29382|SEP1_ARATH Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2

 Score =  157 bits (397), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 124/201 (61%), Gaps = 19/201 (9%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           +M+KTL+RYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGE+LGPL
Sbjct: 62  NMLKTLDRYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           NSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N     R + ++  D 
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETN-----RALAMKLDDM 175

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPI--- 191
            G++    +           ++  Y    AQ QG   +  LEC PTLQ+GY   +P+   
Sbjct: 176 IGVR--SHHMGGGGGWEGGEQNVTYAHHQAQSQG--LYQPLECNPTLQMGYD--NPVCSE 229

Query: 192 ----SVVTAGPSLNNYMQGWL 208
               +        N Y+ GW+
Sbjct: 230 QITATTQAQAQQGNGYIPGWM 250

Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
116078097	245	MADS-box protein [Citrus unshiu]	0.871	0.746	0.928	6e-99
255547672	182	mads box protein, putative [Ricinus comm	0.866	1.0	0.786	5e-81
449445548	242	PREDICTED: agamous-like MADS-box protein	0.861	0.747	0.789	5e-80
449529604	196	PREDICTED: agamous-like MADS-box protein	0.861	0.923	0.789	8e-80
224057774	242	predicted protein [Populus trichocarpa]	0.857	0.743	0.778	7e-79
225425372	242	PREDICTED: MADS-box protein 4 [Vitis vin	0.861	0.747	0.774	8e-79
346683573	244	SEPALLATA3-like protein [Mangifera indic	0.866	0.745	0.775	1e-78
60100342	243	MADS box protein SEP3 [Lotus japonicus]	0.861	0.744	0.75	3e-78
30314024	242	SEP3-related MADS-box protein [Populus t	0.857	0.743	0.768	4e-78
224072562	243	predicted protein [Populus trichocarpa]	0.866	0.748	0.753	8e-78

>gi|116078097|dbj|BAF34912.1| MADS-box protein [Citrus unshiu]

 Score =  365 bits (937), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 182/196 (92%), Positives = 183/196 (93%), Gaps = 13/196 (6%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL
Sbjct: 63  SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 122

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR         
Sbjct: 123 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR--------- 173

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
               LMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV
Sbjct: 174 ----LMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 229

Query: 195 TAGPSLNNYMQGWLPC 210
           TAGPSLNNYMQGWLPC
Sbjct: 230 TAGPSLNNYMQGWLPC 245

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547672|ref|XP_002514893.1| mads box protein, putative [Ricinus communis] gi|223545944|gb|EEF47447.1| mads box protein, putative [Ricinus communis]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 155/197 (78%), Positives = 170/197 (86%), Gaps = 15/197 (7%)

Query: 13  LISMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELG 72
           ++SM+KTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGE+LG
Sbjct: 1   MLSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLG 60

Query: 73  PLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 132
           PL+SK+LESLERQLDMSLKQIRSTRTQYMLD LT+LQ KE +L+EANKTLKQR       
Sbjct: 61  PLSSKDLESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHMLNEANKTLKQR------- 113

Query: 133 DFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPIS 192
                 L+EGYQVN +QLNPSAED G+G + AQPQGD FFH L+CEPTLQIGY P D I 
Sbjct: 114 ------LVEGYQVNAMQLNPSAEDVGFGRQAAQPQGDGFFHPLDCEPTLQIGYHP-DQI- 165

Query: 193 VVTAGPSLNNYMQGWLP 209
           VVTAGPS+NNYM GWLP
Sbjct: 166 VVTAGPSVNNYMSGWLP 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445548|ref|XP_004140534.1| PREDICTED: agamous-like MADS-box protein AGL9 homolog [Cucumis sativus]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 167/195 (85%), Gaps = 14/195 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPEPNVS REALELSSQQEYLKLKARYEALQRSQRNLLGE+LGPL
Sbjct: 62  SMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           +SKELESLERQLDMSLKQIRSTRTQYMLD LT+LQ KE LL+EANKTLKQR         
Sbjct: 122 SSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQR--------- 172

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
               L+EGYQVN LQLN SA+D  YG + AQP GD FFH L+CEPTLQIGYQP DPI+VV
Sbjct: 173 ----LVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQP-DPITVV 227

Query: 195 TAGPSLNNYMQGWLP 209
           TAGPS+NN++ GWLP
Sbjct: 228 TAGPSMNNFLPGWLP 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529604|ref|XP_004171788.1| PREDICTED: agamous-like MADS-box protein AGL9 homolog, partial [Cucumis sativus]

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 167/195 (85%), Gaps = 14/195 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPEPNVS REALELSSQQEYLKLKARYEALQRSQRNLLGE+LGPL
Sbjct: 16  SMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPL 75

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           +SKELESLERQLDMSLKQIRSTRTQYMLD LT+LQ KE LL+EANKTLKQR         
Sbjct: 76  SSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQR--------- 126

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
               L+EGYQVN LQLN SA+D  YG + AQP GD FFH L+CEPTLQIGYQP DPI+VV
Sbjct: 127 ----LVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQP-DPITVV 181

Query: 195 TAGPSLNNYMQGWLP 209
           TAGPS+NN++ GWLP
Sbjct: 182 TAGPSMNNFLPGWLP 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057774|ref|XP_002299317.1| predicted protein [Populus trichocarpa] gi|222846575|gb|EEE84122.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 151/194 (77%), Positives = 166/194 (85%), Gaps = 14/194 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQR+QRNLLGEELGPL
Sbjct: 62  SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRTQRNLLGEELGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           +SKELESLERQLDMSLKQIRSTRTQYMLD L +LQHKE +L+ ANK+LK+R         
Sbjct: 122 SSKELESLERQLDMSLKQIRSTRTQYMLDQLHDLQHKEHMLTAANKSLKER--------- 172

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
               LMEGYQ+N+LQLNPSAED  Y  + AQPQGD FFHALECEPTLQIGYQP + I++V
Sbjct: 173 ----LMEGYQLNSLQLNPSAEDVEYARQQAQPQGDGFFHALECEPTLQIGYQPEN-ITMV 227

Query: 195 TAGPSLNNYMQGWL 208
           TAGPS+  YM GWL
Sbjct: 228 TAGPSMTTYMPGWL 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425372|ref|XP_002275705.1| PREDICTED: MADS-box protein 4 [Vitis vinifera] gi|297738477|emb|CBI27678.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 151/195 (77%), Positives = 165/195 (84%), Gaps = 14/195 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPE NVS REALELSSQQEYLKLKARYEALQRSQRNLLGE+LGPL
Sbjct: 62  SMLKTLERYQKCNYGAPETNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           ++KELESLERQLD+SLKQIRSTRTQYMLD LT+LQ KE +L+EANKTLKQR         
Sbjct: 122 STKELESLERQLDVSLKQIRSTRTQYMLDQLTDLQRKEHMLNEANKTLKQR--------- 172

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
               L+EG QVN LQ NP+A+D GYG + AQPQGD FFH LECEPTLQIGYQP DPI+V 
Sbjct: 173 ----LLEGTQVNQLQWNPNAQDVGYGRQQAQPQGDGFFHPLECEPTLQIGYQP-DPITVA 227

Query: 195 TAGPSLNNYMQGWLP 209
            AGPS+NNYM GWLP
Sbjct: 228 AAGPSVNNYMPGWLP 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346683573|gb|AEO45959.1| SEPALLATA3-like protein [Mangifera indica]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/196 (77%), Positives = 166/196 (84%), Gaps = 14/196 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQ+CNYGAPEPNVS REALE+SSQQEYLKLKARYEALQRSQRNLLGEELGPL
Sbjct: 62  SMLKTLERYQRCNYGAPEPNVSTREALEISSQQEYLKLKARYEALQRSQRNLLGEELGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           +SKELESLE+QLDMSLKQIRSTRTQYMLD L ELQHKEQ+LSE NKTLKQR         
Sbjct: 122 SSKELESLEKQLDMSLKQIRSTRTQYMLDQLMELQHKEQVLSETNKTLKQR--------- 172

Query: 135 AGLQLMEGYQVNT-LQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISV 193
               LMEGYQV++ LQLNPSAE+ GYG +PAQ  GDTFFH LECEPTLQIG    + I+ 
Sbjct: 173 ----LMEGYQVSSVLQLNPSAEEMGYGRQPAQLHGDTFFHPLECEPTLQIGSYQHEQITA 228

Query: 194 VTAGPSLNNYMQGWLP 209
           V+AGPS+NNYM GWLP
Sbjct: 229 VSAGPSVNNYMPGWLP 244

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60100342|gb|AAX13298.1| MADS box protein SEP3 [Lotus japonicus]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 147/196 (75%), Positives = 165/196 (84%), Gaps = 15/196 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPE NVS REALELSSQQEYLKLKARYEALQRSQRNL+GE+LGPL
Sbjct: 62  SMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           NSKELESLERQLD SLKQIRSTRTQ+MLD L++LQ KE +LSEAN++L+QR         
Sbjct: 122 NSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRQ-------- 173

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
                +EGYQ+N+LQLNP  ED GYG  PAQ  GD F+H++ECEPTLQIGYQP DP+SVV
Sbjct: 174 -----LEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHSIECEPTLQIGYQP-DPVSVV 227

Query: 195 TAGPSL-NNYMQGWLP 209
           TAGPS+ NNYM GWLP
Sbjct: 228 TAGPSMNNNYMAGWLP 243

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30314024|gb|AAO49811.1| SEP3-related MADS-box protein [Populus tremuloides]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/194 (76%), Positives = 165/194 (85%), Gaps = 14/194 (7%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYE LQR+QRNLLGEELGPL
Sbjct: 62  SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEGLQRTQRNLLGEELGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           +SK+LESLERQLDMSLKQIRSTRTQYMLD L +LQHKE +L+ ANK+LK+R         
Sbjct: 122 SSKDLESLERQLDMSLKQIRSTRTQYMLDQLNDLQHKEHMLTAANKSLKER--------- 172

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
               LMEGYQ+N+LQLNPSAED  Y  + AQPQGD FFHALECEPTLQIGYQP + I++V
Sbjct: 173 ----LMEGYQLNSLQLNPSAEDVEYARQQAQPQGDGFFHALECEPTLQIGYQPEN-ITMV 227

Query: 195 TAGPSLNNYMQGWL 208
           TAGPS+  YM GWL
Sbjct: 228 TAGPSMTTYMPGWL 241

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072562|ref|XP_002303783.1| predicted protein [Populus trichocarpa] gi|222841215|gb|EEE78762.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 147/195 (75%), Positives = 164/195 (84%), Gaps = 13/195 (6%)

Query: 15  SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
           SM+KTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQR+QRNLLGE+LGPL
Sbjct: 62  SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRTQRNLLGEDLGPL 121

Query: 75  NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
           +SKELESLERQLDMSLKQIRSTRTQYMLD L +LQHKE +L+ ANK+L++R         
Sbjct: 122 SSKELESLERQLDMSLKQIRSTRTQYMLDQLNDLQHKEHMLTAANKSLRER--------- 172

Query: 135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
               LMEGY+VN+LQLN SAED G+  + AQPQG  FFH LECEPTLQIGYQP   I+VV
Sbjct: 173 ----LMEGYEVNSLQLNLSAEDVGFSRQQAQPQGYGFFHPLECEPTLQIGYQPDSAITVV 228

Query: 195 TAGPSLNNYMQGWLP 209
           T+GPS+  YM GWLP
Sbjct: 229 TSGPSMTAYMPGWLP 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
UNIPROTKB|Q03489	241	FBP2 "Agamous-like MADS-box pr	0.857	0.746	0.733	5.1e-67
UNIPROTKB|O65874	247	MTF1 "MADS-box transcription f	0.861	0.732	0.685	1.6e-63
UNIPROTKB|D2T2F9	252	grcd5 "GRCD5 protein" [Gerbera	0.866	0.722	0.678	2.1e-61
TAIR|locus:2032372	251	SEP3 "SEPALLATA3" [Arabidopsis	0.852	0.713	0.63	2.3e-55
TAIR|locus:2076522	250	SEP2 "SEPALLATA 2" [Arabidopsi	0.857	0.72	0.495	6.8e-40
UNIPROTKB|Q0J466	249	MADS7 "MADS-box transcription	0.876	0.738	0.492	8.7e-40
UNIPROTKB|Q9ATF2	246	FBP5 "MADS-box transcription f	0.852	0.727	0.512	2.9e-39
TAIR|locus:2143261	262	SEP1 "SEPALLATA1" [Arabidopsis	0.747	0.599	0.526	4.4e-36
UNIPROTKB|Q6EUV7	247	grcd2 "MADS domain protein" [G	0.866	0.736	0.461	1.1e-34
UNIPROTKB|Q9FST1	242	grcd1 "MADS box protein" [Gerb	0.823	0.714	0.482	5.8e-34

UNIPROTKB|Q03489 FBP2 "Agamous-like MADS-box protein AGL9 homolog" [Petunia x hybrida (taxid:4102)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 143/195 (73%), Positives = 156/195 (80%)

Query:    15 SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
             SM+KTLERYQKCNYGAPE N+S REALE+SSQQEYLKLKARYEALQRSQRNLLGE+LGPL
Sbjct:    62 SMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPL 121

Query:    75 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
             NSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQR         
Sbjct:   122 NSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQR--------- 172

Query:   135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVV 194
                 LMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V 
Sbjct:   173 ----LMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQN-DPITVG 226

Query:   195 TAGPSLNNYMQGWLP 209
              AGPS+NNYM GWLP
Sbjct:   227 GAGPSVNNYMAGWLP 241

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O65874 MTF1 "MADS-box transcription factor 1" [Pisum sativum (taxid:3888)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 137/200 (68%), Positives = 155/200 (77%)

Query:    15 SMVKTLERYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELG 72
             SM+KTLERYQKCNYGAPE NV+++EAL  ELSSQQEYLKLKARYE+LQRSQRNL+GE+LG
Sbjct:    62 SMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLG 121

Query:    73 PLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 132
             PL+SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR       
Sbjct:   122 PLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR------- 174

Query:   133 DFAGLQLMEGYQVNTLQLNPSAEDCGYGLK-PAQPQGDTFFHA--LECEPTLQIGYQPAD 189
                    MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   D
Sbjct:   175 -------MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGD 227

Query:   190 PISVVTAGPSLNNYMQGWLP 209
             P SVVTAGPS+NNYM GWLP
Sbjct:   228 PGSVVTAGPSMNNYMGGWLP 247

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0009888 "tissue development" evidence=NAS

UNIPROTKB|D2T2F9 grcd5 "GRCD5 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 139/205 (67%), Positives = 154/205 (75%)

Query:    15 SMVKTLERYQKCNYGAPEP-NVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP 73
             SM+KTLERYQKCNYGAP+  NVSAREALELSSQQEYLKLKARYEALQRSQRNLLGE+LGP
Sbjct:    62 SMLKTLERYQKCNYGAPDQTNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 121

Query:    74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAD 133
             LN KELESLERQLD SLK IRS RTQ MLDTLT+LQ KE  L+EAN+TLKQR        
Sbjct:   122 LNCKELESLERQLDTSLKHIRSARTQLMLDTLTDLQKKEHALNEANRTLKQR-------- 173

Query:   134 FAGLQLMEGYQVNTLQLNPSA-EDCGYGLKPAQPQGDT---FFHALECEPTLQIGYQPAD 189
                  L+EG Q+N+L   P A ++  Y  +   PQ  T   FFH L+C PTLQIGYQ  D
Sbjct:   174 -----LIEGTQINSLHWYPQAPQEVCYDDRQHAPQHQTDEAFFHPLDCGPTLQIGYQ-TD 227

Query:   190 PISVV----TAGPSLNNYMQGWLPC 210
             PI+V      AGPS+NNYMQGWLPC
Sbjct:   228 PINVAGAEAVAGPSMNNYMQGWLPC 252

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2032372 SEP3 "SEPALLATA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 126/200 (63%), Positives = 148/200 (74%)

Query:    15 SMVKTLERYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELG 72
             SM++TLERYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGE+LG
Sbjct:    62 SMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLG 121

Query:    73 PLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 132
             PL++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+         
Sbjct:   122 PLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLR--------- 172

Query:   133 DFAGLQLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPTLQIGYQPAD 189
                 L+L +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ   
Sbjct:   173 ----LRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ 227

Query:   190 PISVVTAGPSLNNYMQGWLP 209
                 + AGPS+NNYM GWLP
Sbjct:   228 --DGMGAGPSVNNYMLGWLP 245

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0010093 "specification of floral organ identity" evidence=RCA;IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2076522 SEP2 "SEPALLATA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 100/202 (49%), Positives = 130/202 (64%)

Query:    15 SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
             +M+KTLERYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGE+LGPL
Sbjct:    62 NMLKTLERYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:    75 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT---MTLRH 131
             NSKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +    + +RH
Sbjct:   121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query:   132 ADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ-P--A 188
                 G     G++    Q      +  YG   A  QG   + +LEC+PTLQIGY  P  +
Sbjct:   181 HHIGG-----GWEGGDQQ------NIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCS 227

Query:   189 DPISVVTAGPSL--NNYMQGWL 208
             + ++V   G S   N Y+ GW+
Sbjct:   228 EQMAVTVQGQSQQGNGYIPGWM 249

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009908 "flower development" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0J466 MADS7 "MADS-box transcription factor 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 98/199 (49%), Positives = 130/199 (65%)

Query:    15 SMVKTLERYQKCNYGAPEPNVSAREALEL-SSQQEYLKLKARYEALQRSQRNLLGEELGP 73
             SM KTLE+YQKC+Y  PE  V  RE+ +L +S+ EYLKLKAR E LQR+QRNLLGE+L  
Sbjct:    62 SMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDS 121

Query:    74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAD 133
             L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H  
Sbjct:   122 LGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV- 180

Query:   134 FAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADP 190
               G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+ 
Sbjct:   181 -RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEH 231

Query:   191 ISVVTAGPSLNNYMQGWLP 209
                + +   +N YM  WLP
Sbjct:   232 HEAMNSA-CMNTYMPPWLP 249

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATF2 FBP5 "MADS-box transcription factor FBP5" [Petunia x hybrida (taxid:4102)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 102/199 (51%), Positives = 128/199 (64%)

Query:    15 SMVKTLERYQKCNYGAPEPNV-SAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP 73
             +MVKTL+RYQKC+YG  E N  S ++  E    +EYLKLKA+YE+LQR QR LLG+ELGP
Sbjct:    62 NMVKTLDRYQKCSYGTLEVNHRSVKDNNEERIYREYLKLKAKYESLQRYQRQLLGDELGP 121

Query:    74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAD 133
             LN  ELE LE QLD SLK I+STRTQ MLD L++LQ KE+L  EANK L+++        
Sbjct:   122 LNIDELEHLELQLDSSLKLIKSTRTQLMLDQLSDLQTKEKLWVEANKVLERK-------- 173

Query:   134 FAGLQLMEGYQVNTLQLN-PSAEDCG-YGLKPAQPQGDTFFHALECEPTLQIGYQPA--D 189
                  L + Y  N +Q +    E  G YG + AQ QG  FF  LEC  TLQIGY PA   
Sbjct:   174 -----LEQIYAENNIQQSWGGGEQSGAYGQQHAQTQG--FFQPLECNSTLQIGYDPATSS 226

Query:   190 PISVVTAGPSLNNYMQGWL 208
              I+ VT+G ++N  + GW+
Sbjct:   227 QITAVTSGQNVNGIIPGWM 245

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2143261 SEP1 "SEPALLATA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 91/173 (52%), Positives = 113/173 (65%)

Query:    15 SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
             +M+KTL+RYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGE+LGPL
Sbjct:    62 NMLKTLDRYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:    75 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT---MTLRH 131
             NSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +    + +R 
Sbjct:   121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRS 180

Query:   132 ADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIG 184
                 G    EG + N            Y    AQ QG   +  LEC PTLQ+G
Sbjct:   181 HHMGGGGGWEGGEQNVT----------YAHHQAQSQG--LYQPLECNPTLQMG 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=IDA

UNIPROTKB|Q6EUV7 grcd2 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 91/197 (46%), Positives = 119/197 (60%)

Query:    15 SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPL 74
             +M+K LERYQ C YG+ E + S   A E SS +EY+KLKA+YE+LQ+ QR L GE+LGPL
Sbjct:    62 NMLKMLERYQNCTYGSMEVDRSTPNA-EQSSYKEYMKLKAKYESLQQYQRQLFGEDLGPL 120

Query:    75 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADF 134
             + KELE LERQLD +L+QIRS RTQ MLD L+ELQ KE++  EANK L+ +   +   + 
Sbjct:   121 SLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKERMWVEANKALQNKLEEVYAENQ 180

Query:   135 AGLQLMEGYQVNTLQLNPSAEDCGYGLKPA-QPQGDTFFHALECEPTLQIGYQPADP--I 191
             AG     G   ++           YG +   Q Q   FF  L+C   LQIGY   D   I
Sbjct:   181 AGPSWAAGEHHSS-----------YGQEHQHQHQSQGFFQPLDCNSNLQIGYNTVDSSHI 229

Query:   192 SVVTAGPSLNNYMQGWL 208
             +  T G +LN  + GW+
Sbjct:   230 TASTNGQNLNGLIPGWM 246

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9FST1 grcd1 "MADS box protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 96/199 (48%), Positives = 122/199 (61%)

Query:    15 SMVKTLERYQKCNYGAPEPN-VSAREAL-ELSSQQEYLKLKARYEALQRSQRNLLGEELG 72
             SM+KTLERY+KC++G PE    +A+E L E SS QEY++LK RY+AL+R +RN  GEE+ 
Sbjct:    62 SMLKTLERYEKCSFGPPEQRRPAAKEDLQEQSSYQEYMRLKERYDALKRLERNYYGEEID 121

Query:    73 PLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 132
              L + ELESLERQL  SLKQIR+ RTQ +LD L E Q  E  L E+NKTL+         
Sbjct:   122 SLTTSELESLERQLHCSLKQIRTIRTQSLLDKLYEQQKMEHQLYESNKTLR--------- 172

Query:   133 DFAGLQLMEGYQVNTLQLNPSAEDCG--YGLKP--AQPQGDTFFHALECEPTLQIGYQPA 188
                 L+L E  Q   LQ +  A   G  Y  +   +QP  DTF+H   CE TLQIGYQ +
Sbjct:   173 ----LRLDEEGQAEALQWDAHAHANGMVYAHQHQVSQPMRDTFYHPTGCETTLQIGYQ-S 227

Query:   189 DPISVVTAGPSLNNYMQGW 207
             + +S V      N+ MQGW
Sbjct:   228 EQMSAV------NHQMQGW 240

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q03489	AGL9_PETHY	No assigned EC number	0.7333	0.8571	0.7468	N/A	no
O22456	SEP3_ARATH	No assigned EC number	0.62	0.8523	0.7131	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00010481 hypothetical protein (242 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam01486	100	pfam01486, K-box, K-box region	3e-30

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  106 bits (268), Expect = 3e-30
 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 1/98 (1%)

Query: 28  YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLD 87
           Y     N       E + QQE  KLK + E LQR QR+LLGE+LG L+ KEL+ LE+QL+
Sbjct: 1   YQKLSGNDLWESKYE-NLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLE 59

Query: 88  MSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 125
             LK IRS + + +L+ + ELQ KE+ L E N+ L+Q+
Sbjct: 60  NGLKHIRSRKNELLLNQIEELQKKERELQEENRNLRQK 97

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.91
KOG0014	195	consensus MADS box transcription factor [Transcrip	98.71
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	95.88
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.17
PRK15422	79	septal ring assembly protein ZapB; Provisional	88.27
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.5
PRK13169	110	DNA replication intiation control protein YabA; Re	85.0
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	82.99
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	82.64
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	80.79
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	80.39

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.91  E-value=7.5e-24  Score=160.97  Aligned_cols=82  Identities=43%  Similarity=0.667  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           44 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK  123 (210)
Q Consensus        44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~  123 (210)
                      .|+.|+.+|+.+++.|+..+||++||||++||++||++||++|+.||++||+||+++|.++|+.|++|++.|.++|..|+
T Consensus        16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~   95 (100)
T PF01486_consen   16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLR   95 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH
Q 047287          124 QR  125 (210)
Q Consensus       124 ~k  125 (210)
                      .+
T Consensus        96 ~~   97 (100)
T PF01486_consen   96 QK   97 (100)
T ss_pred             HH
Confidence            99

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=98.71  E-value=5.2e-09  Score=86.88  Aligned_cols=116  Identities=30%  Similarity=0.271  Sum_probs=86.3

Q ss_pred             cCccccccCCCCCHHHHHHHHhhhhCCCCCCCCchHHH----------------HH---HHHHHHHHHHHHHHHHHHHH-
Q 047287            3 SFSLITPCENLISMVKTLERYQKCNYGAPEPNVSAREA----------------LE---LSSQQEYLKLKARYEALQRS-   62 (210)
Q Consensus         3 sGKLyEfsS~s~Sm~kiLeRY~k~s~~~~~~~~~~~e~----------------~~---~~~~~E~~kLk~~ie~Lq~~-   62 (210)
                      +||||+|++++.+|..+++||...............+.                .+   +.+..+...++..++.|+.. 
T Consensus        51 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (195)
T KOG0014|consen   51 SGKLYEFGSSDESVDAVVDRFLNLTEPSRKKKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLE  130 (195)
T ss_pred             CCCccccCCcchhHHHHHHHHHhhhhhhhcccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhH
Confidence            69999999885349999999987655421111001110                00   12456667788888887754 


Q ss_pred             --hhhhhcCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 047287           63 --QRNLLGEELGPLNS-KELESLERQLDMSLKQIRSTRTQYMLDTLT-ELQHKEQLLSEA  118 (210)
Q Consensus        63 --~R~l~GEdL~~Ls~-~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~-~LqkKe~~L~ee  118 (210)
                        +|+++|++|.++++ ++|..+|.+|+.++..+|..+...+.+++. .++.++..+.+.
T Consensus       131 ~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (195)
T KOG0014|consen  131 LEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEAE  190 (195)
T ss_pred             HHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcccc
Confidence              99999999999999 999999999999999999999999998887 666665555443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=95.88  E-value=0.0059  Score=44.40  Aligned_cols=25  Identities=40%  Similarity=0.331  Sum_probs=22.3

Q ss_pred             cCccccccCCCCCHHHHHHHHhhhhCC
Q 047287            3 SFSLITPCENLISMVKTLERYQKCNYG   29 (210)
Q Consensus         3 sGKLyEfsS~s~Sm~kiLeRY~k~s~~   29 (210)
                      +|++|+|+|+  |+..||+||.++++.
T Consensus        50 ~gk~~~f~s~--s~~~vl~ry~~~~~~   74 (77)
T cd00265          50 SGKLYEFSSP--SMEKIIERYQKTSGS   74 (77)
T ss_pred             CCceEEecCC--CHHHHHHHHHhcccc
Confidence            6999999998  689999999998764

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.17  E-value=0.21  Score=36.08  Aligned_cols=48  Identities=27%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT  126 (210)
Q Consensus        74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~  126 (210)
                      +|+..|.+||.++..|+..|..     +..++++|+.+-..|.++|..|+...
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en   48 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEEN   48 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5789999999999999999954     45556788888666666666666663

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=88.27  E-value=3.3  Score=30.47  Aligned_cols=43  Identities=21%  Similarity=0.357  Sum_probs=33.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKT  121 (210)
Q Consensus        74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~  121 (210)
                      +|++=|.+||..+..|+.-|     .++.-+|++|+.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999888     56666778888776666665444

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.50  E-value=1.1  Score=31.27  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047287           65 NLLGEELGPLNSKELESLERQLDMSLKQIRS   95 (210)
Q Consensus        65 ~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRs   95 (210)
                      +.+|+||+.||+.||..==..|+.=+.++|+
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999998766666655555543

The function of this family is unknown.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=85.00  E-value=7  Score=30.43  Aligned_cols=46  Identities=28%  Similarity=0.432  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           76 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT  126 (210)
Q Consensus        76 ~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~  126 (210)
                      ++-|.+||+++..-+..|..-|.++     .+|-..-..|+-+|..||+++
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l   52 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERL   52 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            4668899999988888877666554     356666677777788888884

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=82.99  E-value=9.6  Score=29.43  Aligned_cols=46  Identities=28%  Similarity=0.407  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           76 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT  126 (210)
Q Consensus        76 ~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~  126 (210)
                      ++.|.+||++|..-+..|..-|.++     ..|-..-..|.-+|..||..+
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l   52 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERL   52 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888877776665555443     344444555566666666663

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.64  E-value=14  Score=26.79  Aligned_cols=40  Identities=23%  Similarity=0.385  Sum_probs=29.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEA  118 (210)
Q Consensus        74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~ee  118 (210)
                      +|++=|.+||..+..|+.-|     .++.-+|++|+.|...|..+
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e   40 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQE   40 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHH
Confidence            57888999999999999887     56666777777765544333

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=80.79  E-value=4.1  Score=28.35  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           99 QYMLDTLTELQHKEQLLSEANKTLKQR  125 (210)
Q Consensus        99 qlm~~qi~~LqkKe~~L~eeN~~L~~k  125 (210)
                      +.+.++|.+|..+...|+.+|..|+..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567788899999999999999999887

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=80.39  E-value=2.5  Score=32.89  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 047287          104 TLTELQHKEQLLSEANKTLKQRT  126 (210)
Q Consensus       104 qi~~LqkKe~~L~eeN~~L~~k~  126 (210)
                      .+..|+||.+.|+|||+.|+-|+
T Consensus        73 e~~rlkkk~~~LeEENNlLklKi   95 (108)
T cd07429          73 EVLRLKKKNQQLEEENNLLKLKI   95 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44578889999999999999995

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	97.28
1egw_A	77	MADS box transcription enhancer factor 2, polypept	97.27
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	94.71
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	91.88
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.64
1hbx_A	92	SRF, serum response factor; gene regulation, trans	88.65
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	83.41
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	80.72

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=97.28  E-value=9.2e-05  Score=54.66  Aligned_cols=27  Identities=26%  Similarity=0.207  Sum_probs=23.4

Q ss_pred             ccCccccccCCCCCHHHHHHHHhhhhCCC
Q 047287            2 YSFSLITPCENLISMVKTLERYQKCNYGA   30 (210)
Q Consensus         2 ~sGKLyEfsS~s~Sm~kiLeRY~k~s~~~   30 (210)
                      -+||+|+|||+  +|.+||+||++++...
T Consensus        49 ~~gk~~~f~s~--~~~~il~rY~~~~~~~   75 (90)
T 3p57_A           49 SSNKLFQYAST--DMDKVLLKYTEYNEPH   75 (90)
T ss_dssp             TTCCEEEEESS--CHHHHHHHHHHCCSCC
T ss_pred             CCCCEEEeCCC--CHHHHHHHHHhcCccc
Confidence            37999999996  7999999999987643

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=97.27  E-value=9.5e-05  Score=53.04  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=20.6

Q ss_pred             cCccccccCCCCCHHHHHHHHhhhhC
Q 047287            3 SFSLITPCENLISMVKTLERYQKCNY   28 (210)
Q Consensus         3 sGKLyEfsS~s~Sm~kiLeRY~k~s~   28 (210)
                      +||+|+|+|+  +|.+||+||++++.
T Consensus        50 ~gk~~~~~s~--~~~~il~ry~~~~~   73 (77)
T 1egw_A           50 SNKLFQYAST--DMDKVLLKYTEYNE   73 (77)
T ss_dssp             TCCEEEEESS--CHHHHHHHHHHC--
T ss_pred             CCCEeeCCCC--CHHHHHHHHHhccC
Confidence            7999999987  79999999998764

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=94.71  E-value=0.007  Score=45.35  Aligned_cols=23  Identities=9%  Similarity=-0.064  Sum_probs=19.7

Q ss_pred             cCccccccCCCCCHHHHHHHHhhhh
Q 047287            3 SFSLITPCENLISMVKTLERYQKCN   27 (210)
Q Consensus         3 sGKLyEfsS~s~Sm~kiLeRY~k~s   27 (210)
                      +||+|+|+|+  +|..||+||....
T Consensus        66 ~gk~~~f~sp--s~~~il~r~~G~~   88 (100)
T 1mnm_A           66 TGLVYTFSTP--KFEPIVTQQEGRN   88 (100)
T ss_dssp             TCCEEEEECT--TTTHHHHSHHHHH
T ss_pred             CCCcceecCC--CHHHHHHHhhCCc
Confidence            6999999998  7999999996543

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=91.88  E-value=0.017  Score=43.40  Aligned_cols=28  Identities=7%  Similarity=0.038  Sum_probs=22.6

Q ss_pred             ccCccccccCCCCCHHHHHHH-----HhhhhCCCC
Q 047287            2 YSFSLITPCENLISMVKTLER-----YQKCNYGAP   31 (210)
Q Consensus         2 ~sGKLyEfsS~s~Sm~kiLeR-----Y~k~s~~~~   31 (210)
                      .+||+|+|+|+  +|..+|++     |.+++....
T Consensus        58 ~~gk~~~f~s~--~~~~vi~~~~Gk~l~~~c~~~~   90 (103)
T 1k6o_B           58 ETGHVYTFATR--KLQPMITSETGKALIQTCLNSP   90 (103)
T ss_dssp             SSSCEEEEECG--GGGGGTSSHHHHHHHHHTTCC-
T ss_pred             CCCCeeeecCc--cHHHHHHhhhhhHHHHHHhcCC
Confidence            37999999998  79999998     777776543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.64  E-value=1  Score=32.32  Aligned_cols=46  Identities=20%  Similarity=0.345  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ  124 (210)
Q Consensus        74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~  124 (210)
                      +|++=|.+||..++.|+..|     .++..+|++|+.|-..|.++|..++.
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999987     56677778888887776666665333

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=88.65  E-value=0.037  Score=40.77  Aligned_cols=21  Identities=5%  Similarity=-0.094  Sum_probs=18.1

Q ss_pred             ccCccccccCCCCCHHHHHHHHh
Q 047287            2 YSFSLITPCENLISMVKTLERYQ   24 (210)
Q Consensus         2 ~sGKLyEfsS~s~Sm~kiLeRY~   24 (210)
                      .+||+|+|+|+  +|..+|++|.
T Consensus        59 ~~gk~~~f~s~--~~~~~i~~~~   79 (92)
T 1hbx_A           59 ETGHVYTFATR--KLQPMITSET   79 (92)
T ss_dssp             TTSCEEEEECG--GGGGGTSSHH
T ss_pred             CCCCEEEecCC--CHHHHHhhhc
Confidence            37999999998  7999999773

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=83.41  E-value=8.2  Score=26.02  Aligned_cols=53  Identities=25%  Similarity=0.335  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287           72 GPLNSKELESLERQLDMSLKQIRS--TRTQYMLDTLTELQHKEQLLSEANKTLKQ  124 (210)
Q Consensus        72 ~~Ls~~EL~~LE~qLe~sL~~IRs--rK~qlm~~qi~~LqkKe~~L~eeN~~L~~  124 (210)
                      ++.++.|...+-+-|-.|=.+|-.  +=+.-+.+++.-||+|.+.|+.+|..||.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            456677777776666666555542  33455678889999999999999999874

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=80.72  E-value=5.2  Score=26.94  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287           89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL  129 (210)
Q Consensus        89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~  129 (210)
                      |-.+.|.||.+.+    .+|..+...|..+|..|..++..+
T Consensus        20 AArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~L   56 (63)
T 2dgc_A           20 AARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARL   56 (63)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677888887765    789999999999999999985443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	96.49
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	94.65
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	93.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00049  Score=46.88  Aligned_cols=22  Identities=27%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             cCccccccCCCCCHHHHHHHHhhh
Q 047287            3 SFSLITPCENLISMVKTLERYQKC   26 (210)
Q Consensus         3 sGKLyEfsS~s~Sm~kiLeRY~k~   26 (210)
                      +||+|+|+|+  ++..||+||+++
T Consensus        50 ~gk~~~f~s~--~~~~vl~ry~~~   71 (71)
T d1egwa_          50 SNKLFQYAST--DMDKVLLKYTEY   71 (71)
T ss_dssp             TCCEEEEESS--CHHHHHHHHHHC
T ss_pred             CCCEEEeeCC--CHHHHHHHHhcC
Confidence            6999999997  799999999875

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=0.0035  Score=43.94  Aligned_cols=23  Identities=9%  Similarity=-0.064  Sum_probs=20.3

Q ss_pred             cCccccccCCCCCHHHHHHHHhhhh
Q 047287            3 SFSLITPCENLISMVKTLERYQKCN   27 (210)
Q Consensus         3 sGKLyEfsS~s~Sm~kiLeRY~k~s   27 (210)
                      +||+|+|+|+  +|..||+||+..+
T Consensus        52 ~gk~~~f~sp--~v~~vl~r~~~~~   74 (85)
T d1mnma_          52 TGLVYTFSTP--KFEPIVTQQEGRN   74 (85)
T ss_dssp             TCCEEEEECT--TTTHHHHSHHHHH
T ss_pred             CCCEEeccCC--CHHHHHHHHhccc
Confidence            7999999998  7999999998643

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.0082  Score=41.88  Aligned_cols=22  Identities=5%  Similarity=-0.108  Sum_probs=19.5

Q ss_pred             cCccccccCCCCCHHHHHHHHhhh
Q 047287            3 SFSLITPCENLISMVKTLERYQKC   26 (210)
Q Consensus         3 sGKLyEfsS~s~Sm~kiLeRY~k~   26 (210)
                      +||+|+|+|+  ++..+|+||+..
T Consensus        52 ~gk~~~f~s~--~~~~vi~~~~~~   73 (84)
T d1srsa_          52 TGHVYTFATR--KLQPMITSETGK   73 (84)
T ss_dssp             TCCEEEEECG--GGHHHHSSHHHH
T ss_pred             CCCEEEeeCC--CHHHHHHHHHHH
Confidence            7999999998  799999999743