Citrus Sinensis ID: 047296

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
MVTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVSASGFVQPNSCLRL
cEEEEccccccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEcccccccccEEEEcEEEEEEEEccEEEEccEEEccccccccccccccccccccccccccEEEEEEEEccEEEEcEEEEccccEEEEEEcEEEEEEEEEEEEcccccccccEEEccccccEEEEEEEEEccccEEEEcccEEEEEccccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEcEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEccccccEEEEEEEEEEEcEEcccccccc
cEEEEEcccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEccccccEEEEEccEEEEEEEEcEEEEEEEEEcccccHHccccccccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccEEEcEccccccccccEEEEEEEEEcccccccEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEccccccccEEccccccccccccccccccc
MVTYNVISlgaksdgqtdSTKAFLAAWAKACGstaastiyvppgryllHNVVfqgqcrnnditihagNWILFEHVNGVYIYGGILDGQGAGLwarkrsgnnncpsgakESWKIILGfsnsnnilingltsqnsqMFHVVINGCHNVKVQGMrvsasgnspntdgihvqsssDVTILNArigtgddcvsvghgisigslgkeVHEAGVQNVTvkyswgrpstgfsrnILFQHAvmksvdnpividqnycrdnkncpgkasgvkisdvtyqdihgtsVTKVVVKIdcsqkypcsgikfedvkliyknqpaeascrnadvsasgfvqpnsclrl
MVTYNVISlgaksdgqtdSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEascrnadvsasgfvqpnsclrl
MVTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVSASGFVQPNSCLRL
*******************TKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRS***NCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGM********************DVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKN**************************
MVTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDN***P**ASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVSASGFVQPNSCLRL
MVTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVSASGFVQPNSCLRL
MVTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVSASGFVQPNSCLR*
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MVTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVSASGFVQPNSCLRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query331 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.975 0.821 0.613 1e-122
O22818405 Probable polygalacturonas no no 0.972 0.795 0.505 2e-92
O23147431 Polygalacturonase ADPG1 O no no 0.951 0.730 0.364 7e-56
P35336467 Polygalacturonase OS=Acti N/A no 0.963 0.683 0.355 3e-55
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.960 0.724 0.354 1e-54
Q39786407 Polygalacturonase OS=Goss N/A no 0.963 0.783 0.331 3e-51
P35339410 Exopolygalacturonase OS=Z N/A no 0.963 0.778 0.350 4e-51
P49062422 Exopolygalacturonase clon no no 0.867 0.680 0.349 1e-50
Q39766407 Polygalacturonase OS=Goss N/A no 0.963 0.783 0.328 1e-50
P26216410 Exopolygalacturonase OS=Z N/A no 0.960 0.775 0.355 3e-50
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/373 (61%), Positives = 261/373 (69%), Gaps = 50/373 (13%)

Query: 2   VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNND 61
           +TYNV SLGAK+DG+TDSTKAFL+AWAKAC S     IYVP G + L +VVF G C+NN 
Sbjct: 26  LTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAGTFFLRDVVFSGPCKNNA 85

Query: 62  ITI----------------HAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPS 105
           IT                 +A NWI F HVNGV I GGILDGQG  LWA K     +CPS
Sbjct: 86  ITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQGTALWACKACHGESCPS 145

Query: 106 GAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGI 165
           GA       LGFS+SNNI+++GL S NSQMFH+VIN   NV++QG+RVS SGNSPNTDGI
Sbjct: 146 GATT-----LGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGI 200

Query: 166 HVQSSSDVTILNARIGTGDDCVSVG----------------HGISIGSLGKEVHEAGVQN 209
           HVQ SS VTILN++I TGDDCVS+G                HGISIGSLGKE  EAGVQN
Sbjct: 201 HVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQN 260

Query: 210 VTVKY-------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPG 256
           VTVK              SWGRPSTGF+RNILFQHA M +V+NPIVIDQ+YC DNK CPG
Sbjct: 261 VTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPG 320

Query: 257 KASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNAD 316
           + SGV+ISDVTY+DIHGTS T+V VK DCS K+PC  IK EDVKL YKNQ AE+SC +AD
Sbjct: 321 QVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHAD 380

Query: 317 VSASGFVQPNSCL 329
            +  G VQP SCL
Sbjct: 381 GTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
255576396393 Polygalacturonase precursor, putative [R 0.966 0.814 0.649 1e-128
85680276393 endo-polygalacturonase [Prunus persica] 0.975 0.821 0.627 1e-124
3747093393 endopolygalacturonase [Prunus persica] g 0.975 0.821 0.627 1e-124
224092840392 predicted protein [Populus trichocarpa] 0.966 0.816 0.622 1e-124
157313320393 endopolygalacturonase [Prunus persica] 0.975 0.821 0.627 1e-124
85680278393 endo-polygalacturonase [Prunus persica] 0.975 0.821 0.627 1e-124
87242603393 polygalacturonase [Prunus domestica subs 0.975 0.821 0.621 1e-123
315143143393 endopolygalacturonase [Prunus armeniaca] 0.975 0.821 0.616 1e-122
380469906393 endopolygalacturonase [Prunus armeniaca] 0.975 0.821 0.613 1e-122
255576398392 Polygalacturonase precursor, putative [R 0.972 0.821 0.603 1e-120
>gi|255576396|ref|XP_002529090.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531441|gb|EEF33274.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/371 (64%), Positives = 273/371 (73%), Gaps = 51/371 (13%)

Query: 4   YNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDIT 63
           YNV+S GAK DG+TDSTKAFLAAW +ACGST   TIYVP G++ L ++ F G C+NN I 
Sbjct: 29  YNVLSYGAKPDGRTDSTKAFLAAWTQACGSTKPPTIYVPSGKFFLKDLSFGGPCKNNAIL 88

Query: 64  I----------------HAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGA 107
                            +AG W+ F+HVNGV I GGILDGQG+GLWA K SG N CPSGA
Sbjct: 89  FRIDGTLVAPSDYKVIGNAGYWLYFQHVNGVTISGGILDGQGSGLWACKASGKN-CPSGA 147

Query: 108 KESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHV 167
                  LGFSNS NI INGLTSQNSQMFH+VINGC NVKVQG+ VSASG+SPNTDGIHV
Sbjct: 148 TS-----LGFSNSKNIAINGLTSQNSQMFHIVINGCQNVKVQGVTVSASGDSPNTDGIHV 202

Query: 168 QSSSDVTILNARIGTGDDCVSVG----------------HGISIGSLGKEVHEAGVQNVT 211
           Q S  VTILN++I TGDDC+S+G                HGISIGSLGK++ EAGVQNVT
Sbjct: 203 QQSGGVTILNSKIRTGDDCISIGPGATNLWIENIACGPGHGISIGSLGKDLQEAGVQNVT 262

Query: 212 VKY-------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKA 258
           VK              SWGRPS+GF+RNILFQHA+M +V NPIVIDQNYC DNKNCPG+ 
Sbjct: 263 VKTVTFTGTQNGVRIKSWGRPSSGFARNILFQHAIMTNVQNPIVIDQNYCPDNKNCPGQE 322

Query: 259 SGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVS 318
           SGVKIS VTYQDIHGTS T+V VK DCS+K PC+GIK EDVKL YKNQPA+ASC NAD +
Sbjct: 323 SGVKISGVTYQDIHGTSATEVAVKFDCSKKEPCTGIKLEDVKLTYKNQPADASCNNADGT 382

Query: 319 ASGFVQPNSCL 329
           ASGFVQP+SCL
Sbjct: 383 ASGFVQPSSCL 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|85680276|gb|ABC72324.1| endo-polygalacturonase [Prunus persica] gi|110293963|gb|ABG66443.1| endo-polygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|3747093|gb|AAC64184.1| endopolygalacturonase [Prunus persica] gi|337730173|gb|AEI70577.1| endo-polygalacturonase [Prunus persica] gi|337730175|gb|AEI70578.1| endo-polygalacturonase [Prunus persica] gi|337730177|gb|AEI70579.1| endo-polygalacturonase [Prunus persica] gi|337730179|gb|AEI70580.1| endo-polygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|224092840|ref|XP_002309718.1| predicted protein [Populus trichocarpa] gi|222852621|gb|EEE90168.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|157313320|gb|ABV32553.1| endopolygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|85680278|gb|ABC72325.1| endo-polygalacturonase [Prunus persica] gi|110293961|gb|ABG66442.1| endo-polygalactoronase [Prunus persica] gi|337730171|gb|AEI70576.1| endo-polygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|87242603|gb|ABD33834.1| polygalacturonase [Prunus domestica subsp. insititia] Back     alignment and taxonomy information
>gi|315143143|gb|ADT82706.1| endopolygalacturonase [Prunus armeniaca] Back     alignment and taxonomy information
>gi|380469906|gb|AFD62267.1| endopolygalacturonase [Prunus armeniaca] Back     alignment and taxonomy information
>gi|255576398|ref|XP_002529091.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531442|gb|EEF33275.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.613 0.517 0.475 7.2e-86
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.613 0.511 0.432 1.4e-78
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.619 0.528 0.549 1.4e-62
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.619 0.533 0.536 9e-61
TAIR|locus:2046555 664 AT2G33160 [Arabidopsis thalian 0.625 0.311 0.363 1.1e-54
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.619 0.506 0.530 1.6e-54
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.631 0.530 0.463 2.5e-49
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.625 0.525 0.418 1e-45
TAIR|locus:2032125404 AT1G78400 [Arabidopsis thalian 0.555 0.455 0.326 1.6e-44
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.622 0.522 0.423 8.1e-44
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 498 (180.4 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
 Identities = 114/240 (47%), Positives = 152/240 (63%)

Query:     4 YNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNN--- 60
             YNV+S GAK DG+TDSTKAFL AW  AC S AA T+ VP G +LL  V F+G CR+    
Sbjct:    29 YNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVTVPRGSFLLKPVEFRGPCRSRITF 88

Query:    61 DI--TIHA-------GN---WILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAK 108
              I  TI A       GN   WILF  VN + I GG LD +GA  WA ++SG + CP GA+
Sbjct:    89 QIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTLDARGASFWACRKSGKS-CPVGAR 147

Query:   109 ESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQ 168
                   + F+ +N+++++GLTS NSQ  H+VIN C+NV V+ +++ A   SPNTDG+HVQ
Sbjct:   148 S-----MTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQSPNTDGLHVQ 202

Query:   169 SSSDVTILNARIGTGDDCVSVG----------------HGISIGSLGKEVHEAGVQNVTV 212
              S+ VT+ +    TGDDC+S+G                HGISIGSLG++ +EAGV+N+T+
Sbjct:   203 GSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRDANEAGVENITL 262
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046555 AT2G33160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032125 AT1G78400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.61390.97580.8218N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-102
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 5e-83
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-66
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 8e-66
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 5e-61
PLN03010409 PLN03010, PLN03010, polygalacturonase 7e-54
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 9e-54
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-11
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 1e-05
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  305 bits (783), Expect = e-102
 Identities = 166/374 (44%), Positives = 228/374 (60%), Gaps = 53/374 (14%)

Query: 2   VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNND 61
             +NV+S GAK DG TDST AFL AW  ACGS +++T+ VP G +LL  + F G C++  
Sbjct: 26  NVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSK- 84

Query: 62  ITI----------------HAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPS 105
           IT                 ++G WILF  VN   + GG  D +  G W+ ++SG N CP 
Sbjct: 85  ITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQN-CPP 143

Query: 106 GAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGI 165
           G +      + F+++ +++I+G+ S NSQ+ H+ +NGC NV V+ +++ A GNSPNTDG 
Sbjct: 144 GVRS-----ISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF 198

Query: 166 HVQSSSDVTILNARIGTGDDCVSVG----------------HGISIGSLGKEVHEAGVQN 209
           HVQ S+ VT   + + TGDDCV++G                HG+SIGSL KE++E GV+N
Sbjct: 199 HVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVEN 258

Query: 210 VTVKYS-------------WGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPG 256
           VTV  S             W RPSTGF RN+ FQ  VMK+V+NPI+IDQNYC  ++ CP 
Sbjct: 259 VTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPN 318

Query: 257 KASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIY-KNQPAEASCRNA 315
           + SGVKIS VTY++I GTS T+  +K+ CS+  PC+GI  +D+KL Y K  PA + C NA
Sbjct: 319 EYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNA 378

Query: 316 DVSASGFVQPNSCL 329
              + G +QP SCL
Sbjct: 379 VGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 331
PLN02155394 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03010409 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.9
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.77
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.74
PLN02793443 Probable polygalacturonase 99.56
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.56
PLN02218431 polygalacturonase ADPG 99.55
PLN02155394 polygalacturonase 99.52
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.52
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.52
PLN03010409 polygalacturonase 99.5
PLN03003456 Probable polygalacturonase At3g15720 99.5
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.16
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.16
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.09
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 97.99
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 97.99
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 97.94
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.78
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.48
PLN02480343 Probable pectinesterase 97.39
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.31
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.19
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.14
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.13
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.07
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.06
smart00656190 Amb_all Amb_all domain. 97.05
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.02
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.97
PLN02773317 pectinesterase 96.64
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.44
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.36
PRK10531422 acyl-CoA thioesterase; Provisional 96.19
PLN02665366 pectinesterase family protein 96.01
PLN02432293 putative pectinesterase 95.92
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.89
PLN02682369 pectinesterase family protein 95.79
PLN02176340 putative pectinesterase 95.74
PLN02634359 probable pectinesterase 95.49
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.41
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.31
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.12
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.11
PLN02304379 probable pectinesterase 95.11
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.07
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.01
smart00656190 Amb_all Amb_all domain. 94.95
PLN02497331 probable pectinesterase 94.93
PLN02671359 pectinesterase 94.92
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.78
PLN02301548 pectinesterase/pectinesterase inhibitor 94.73
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.7
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.57
PLN02197588 pectinesterase 94.51
PLN02916502 pectinesterase family protein 94.43
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.21
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.08
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.99
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.9
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.72
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.67
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.54
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.46
PLN02314586 pectinesterase 92.86
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 92.83
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.7
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.91
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 89.04
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 87.93
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-71  Score=526.17  Aligned_cols=322  Identities=51%  Similarity=0.962  Sum_probs=288.4

Q ss_pred             cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEEEEEEecccccceEEE---c-------------
Q 047296            2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITI---H-------------   65 (331)
Q Consensus         2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~~l~l~~~~~~~~itl---g-------------   65 (331)
                      ++|||+||||++||++|||+|||+||++||++.+|++|+||+|+|++++|.|+++|++ +++|   |             
T Consensus        26 ~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d~~~~~~  104 (394)
T PLN02155         26 NVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGTVVAPEDYRTFGN  104 (394)
T ss_pred             cEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeEEECccccccccc
Confidence            5899999999999999999999999987899889999999999999999999665543 3544   1             


Q ss_pred             cceeEEEeeeeeEEEEceeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEeceec
Q 047296           66 AGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHN  145 (331)
Q Consensus        66 ~~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~n  145 (331)
                      ...|+.+.+.+++.|+||+|||+|+.||+....+ ..++.+|+     +|.|.+|++++|+|++++|||+|++++..|++
T Consensus       105 ~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~-~~~~~~p~-----~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~n  178 (394)
T PLN02155        105 SGYWILFNKVNRFSLVGGTFDARANGFWSCRKSG-QNCPPGVR-----SISFNSAKDVIISGVKSMNSQVSHMTLNGCTN  178 (394)
T ss_pred             cceeEEEECcCCCEEEccEEecCceeEEEcccCC-CCCCCccc-----ceeEEEeeeEEEECeEEEcCCCeEEEEECeee
Confidence            1358999999999999999999999999865433 34455778     99999999999999999999999999999999


Q ss_pred             EEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe----------------ecceEecccCcccccccEEE
Q 047296          146 VKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVHEAGVQN  209 (331)
Q Consensus       146 v~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~~~~v~n  209 (331)
                      |+|++++|.++.+++|+||||+.+|+||+|+||+|.+||||||+                |||++|||+|+++..+.|+|
T Consensus       179 v~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~n  258 (394)
T PLN02155        179 VVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVEN  258 (394)
T ss_pred             EEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEE
Confidence            99999999999888999999999999999999999999999999                79999999988765688999


Q ss_pred             EEEEe-------------eeCCCCCceEEEEEEEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEee
Q 047296          210 VTVKY-------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSV  276 (331)
Q Consensus       210 v~i~n-------------~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~  276 (331)
                      |+|+|             +|++.++|.|+||+|+||+|+++++||.|++.|++....|+...+.+.|+||+|+||+++..
T Consensus       259 V~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~  338 (394)
T PLN02155        259 VTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSA  338 (394)
T ss_pred             EEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEec
Confidence            99998             57655789999999999999999999999999986544465556678999999999999988


Q ss_pred             cceEEEEecCCCCceeeEEEEeEEEEeCC-CCCcceeecceecccceecCCCCCC
Q 047296          277 TKVVVKIDCSQKYPCSGIKFEDVKLIYKN-QPAEASCRNADVSASGFVQPNSCLR  330 (331)
Q Consensus       277 ~~~~~~i~~~~~~~~~ni~~~nv~i~~~~-~~~~~~C~~v~~~~~~~~~p~~c~~  330 (331)
                      ...++.|.|++..||+||+|+||+++..+ .+..+.|+|+++...+++.|++|++
T Consensus       339 ~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~  393 (394)
T PLN02155        339 TQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN  393 (394)
T ss_pred             CCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence            66789999999999999999999999876 4568999999999999889999986

>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-11
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 1e-08
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-08
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 2e-06
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 2e-06
1nhc_A336 Structural Insights Into The Processivity Of Endopo 5e-05
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 6e-04
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 111/262 (42%), Gaps = 53/262 (20%)
Query: 80  IYG-GILDGQGAGLWARKRSGNNNCPSGAK-----ESWKIILGFSNSNNILINGLTSQNS 133
           IYG G +DGQG      K+       + AK     ++   ++  + S N  +  ++  NS
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINS 172
Query: 134 QMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV---- 189
             FHVV +           +     + NTDGI   SS ++TI  + I TGDD V++    
Sbjct: 173 PNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK 232
Query: 190 -----------------GHGISIGSLGKEVHEAGVQNVTV------------KYSWGRPS 220
                            GHG+SIGS        GV NVTV            +    + +
Sbjct: 233 GRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKSA 287
Query: 221 TGFSRNILFQHAVMKSVDNPIVIDQNY-CRDNKNCPGKASGVKISDVTYQDIHGTSVTKV 279
            G    + + + VMK+V  PIVID  Y  ++  N P        SD+T++D+  TS TK 
Sbjct: 288 AGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVP------DWSDITFKDV--TSETKG 339
Query: 280 VVKIDCSQKYPCSGIKFEDVKL 301
           VV ++         +  ++VKL
Sbjct: 340 VVVLNGENAKKPIEVTMKNVKL 361
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 5e-92
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 7e-88
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 3e-79
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-75
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-74
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 2e-74
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 8e-72
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-69
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-68
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-64
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 4e-23
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-22
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-20
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 7e-18
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 5e-12
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 2e-09
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-09
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 1e-05
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 2e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  279 bits (716), Expect = 5e-92
 Identities = 78/371 (21%), Positives = 141/371 (38%), Gaps = 67/371 (18%)

Query: 3   TYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLL-HNVVFQGQCRNN- 60
           T N++S GA +D  TD   A  +AWA AC S     +Y+P G Y L   V   G      
Sbjct: 20  TCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVTLTGGSATAI 76

Query: 61  --DITIHA-----GNWILFEHVNGVYIYG----GILDGQGAGLWARKRSGNNNCPSGAKE 109
             D  I+      GN I         ++     G + G G    A    G          
Sbjct: 77  QLDGIIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYG---------- 126

Query: 110 SWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQS 169
               IL  ++  +  ++ +   ++  FH  ++ C + +V  M +   GN    DGI V  
Sbjct: 127 --ARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVW- 182

Query: 170 SSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVHEAGVQNVTVK 213
            S++ + +  +   D+CV+V                  G ++GSLG    +  V ++  +
Sbjct: 183 GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYR 239

Query: 214 YSW-----------GRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVK 262
             +               +G   N+L ++ +       + ID  +            GV+
Sbjct: 240 NVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAG---DGVQ 296

Query: 263 ISDVTYQDIHGTS---VTKVVVKIDCSQKYPCSGIKFEDVKLIYKN-QPAEASCRNADVS 318
           ++++T ++  GT     T+  +++ CS   PC+ +  ED+ +  ++       CR+A  S
Sbjct: 297 LNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGS 356

Query: 319 ASGFVQPNSCL 329
                  +S  
Sbjct: 357 GYCLKDSSSHT 367
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.98
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.94
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.89
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.81
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.73
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.62
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.61
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.6
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.56
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.56
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.55
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.53
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.49
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.39
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.37
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.32
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.32
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.07
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.93
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.89
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.7
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.69
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 98.53
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.3
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.23
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.09
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.08
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.04
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.04
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.89
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.86
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.84
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.65
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.53
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 97.37
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 97.24
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.1
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.78
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.67
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.53
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.4
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.19
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.07
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.04
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.74
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.55
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.52
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.42
2inu_A410 Insulin fructotransferase; right-handed parallel b 95.08
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 94.88
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 94.66
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 93.27
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 93.2
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 92.62
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 92.4
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 92.16
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 87.11
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 84.74
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.3e-57  Score=439.70  Aligned_cols=292  Identities=25%  Similarity=0.382  Sum_probs=247.4

Q ss_pred             cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEEEEEEecccc---cceEEEc-----c-------
Q 047296            2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCR---NNDITIH-----A-------   66 (331)
Q Consensus         2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~~l~l~~~~~---~~~itlg-----~-------   66 (331)
                      ++|||+||||++||++|||+|||+||+ +|++.+|++|+||+|+|++++|.|++++.   ...|.+.     +       
T Consensus        26 ~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~ggg~v~vP~G~yl~~~l~l~s~v~l~l~gtL~~s~d~~~y~p~~~~~  104 (448)
T 3jur_A           26 REVNLLDFGARGDGRTDCSESFKRAIE-ELSKQGGGRLIVPEGVFLTGPIHLKSNIELHVKGTIKFIPDPERYLPVVLTR  104 (448)
T ss_dssp             CEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHTCEEEEECSSEEEESCEECCTTEEEEESSEEEECCCGGGGCSCEEEE
T ss_pred             cEEEEEecccCCCCCeecHHHHHHHHH-hhhhcCCeEEEECCCcEEEeeeEeCCCcEEEEEEEEEecCCHHHhCcccccc
Confidence            579999999999999999999999996 57777899999999999999999998532   1112111     1       


Q ss_pred             ---------ceeEEEeeeeeEEEEc-eeeeCCC--CceeecccC---C------------------------------CC
Q 047296           67 ---------GNWILFEHVNGVYIYG-GILDGQG--AGLWARKRS---G------------------------------NN  101 (331)
Q Consensus        67 ---------~~~i~~~~~~ni~I~G-G~idg~g--~~~~~~~~~---~------------------------------~~  101 (331)
                               .+||++.+++||+|+| |+|||+|  +.||+....   +                              +.
T Consensus       105 ~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~  184 (448)
T 3jur_A          105 FEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGK  184 (448)
T ss_dssp             ETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHTCCGGGCBCST
T ss_pred             cccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcccCcchhhhccc
Confidence                     2479999999999999 9999999  899974321   0                              01


Q ss_pred             CCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEc
Q 047296          102 NCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIG  181 (331)
Q Consensus       102 ~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~  181 (331)
                      ....||+     +|.|.+|+|++|+|++++|+|+|++++..|++++|++++|.++  ++|+||||+.+|+||+|+||+|.
T Consensus       185 ~~~~RP~-----~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i~  257 (448)
T 3jur_A          185 GHYLRPS-----FVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFD  257 (448)
T ss_dssp             TCCCCCC-----SEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEEE
T ss_pred             cccCCce-----EEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEEE
Confidence            1235788     9999999999999999999999999999999999999999997  58999999999999999999999


Q ss_pred             cCCCeEEe-----------------------------ec-ceEecccCcccccccEEEEEEEe-------------eeCC
Q 047296          182 TGDDCVSV-----------------------------GH-GISIGSLGKEVHEAGVQNVTVKY-------------SWGR  218 (331)
Q Consensus       182 ~gDD~i~i-----------------------------~~-Gi~iGs~g~~~~~~~v~nv~i~n-------------~~~~  218 (331)
                      ++||||++                             +| ||+|||++    .+.|+||+|+|             +|.+
T Consensus       258 ~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~GirIKt~~g  333 (448)
T 3jur_A          258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALRLKTNSR  333 (448)
T ss_dssp             ESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEEEECCTT
T ss_pred             eCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEEEEEEcC
Confidence            99999998                             45 79999985    46899999999             3443


Q ss_pred             CCCceEEEEEEEeeeecCCCccE-EEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeecceEEEEecCCCCceeeEEEE
Q 047296          219 PSTGFSRNILFQHAVMKSVDNPI-VIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFE  297 (331)
Q Consensus       219 ~~~g~v~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~~~~~~~i~~~~~~~~~ni~~~  297 (331)
                       ++|.|+||+|+||+|+++.+|+ .|++.|+..     .....+.|+||+|+||+++. ...++.|.|.++.||+||+|+
T Consensus       334 -~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~-----~~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~~~I~~~  406 (448)
T 3jur_A          334 -RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYVKDILIS  406 (448)
T ss_dssp             -TCSEEEEEEEESCEEEEESSEEEEEESCGGGC-----CCSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCEEEEEEE
T ss_pred             -CCceEeeEEEEEEEEECCccccEEEEeeccCC-----CCCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCEeeEEEE
Confidence             6799999999999999999988 999999863     12345699999999999998 457899999999999999999


Q ss_pred             eEEEEeCCCCCcceeec
Q 047296          298 DVKLIYKNQPAEASCRN  314 (331)
Q Consensus       298 nv~i~~~~~~~~~~C~~  314 (331)
                      ||+++...  ....|.+
T Consensus       407 nv~i~~~~--~~~~~~~  421 (448)
T 3jur_A          407 DTIIEGAK--ISVLLEF  421 (448)
T ss_dssp             EEEEESCS--EEEEEEE
T ss_pred             EEEEEccc--cceeEec
Confidence            99998543  2244554
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 331
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 5e-64
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-62
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-61
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-54
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-47
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 6e-46
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 2e-44
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 4e-40
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  206 bits (525), Expect = 5e-64
 Identities = 74/366 (20%), Positives = 138/366 (37%), Gaps = 59/366 (16%)

Query: 3   TYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHN-VVFQGQCRNN- 60
           T N++S GA +D  TD   A  +AWA AC S     +Y+P G Y L+  V   G      
Sbjct: 20  TCNILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSGNYALNTWVTLTGGSATAI 76

Query: 61  --DITIHA-----GNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKI 113
             D  I+      GN I         ++     G   G      +               
Sbjct: 77  QLDGIIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGAR-------- 128

Query: 114 ILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDV 173
           IL  ++  +  ++ +   ++  FH  ++ C + +V  M +   GN    DGI V   S++
Sbjct: 129 ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVW-GSNI 186

Query: 174 TILNARIGTGDDCVSVGHG----------------ISIGSLGKEVHEAGVQNVTVKYSW- 216
            + +  +   D+CV+V                    ++GSLG    +  V ++  +  + 
Sbjct: 187 WVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYRNVYT 243

Query: 217 ----------GRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDV 266
                         +G   N+L ++ +       + ID  +            GV+++++
Sbjct: 244 WSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAG---DGVQLNNI 300

Query: 267 TYQDIHGTS---VTKVVVKIDCSQKYPCSGIKFEDVKLIYKN-QPAEASCRNADVSASGF 322
           T ++  GT     T+  +++ CS   PC+ +  ED+ +  ++       CR+A  S    
Sbjct: 301 TVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGYCL 360

Query: 323 VQPNSC 328
              +S 
Sbjct: 361 KDSSSH 366
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.61
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.58
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.55
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.55
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.48
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.36
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.35
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.08
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.07
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.11
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.67
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.46
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.17
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 96.83
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.82
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.62
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.26
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.85
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 95.76
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.41
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.4
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.08
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 91.88
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 91.49
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 91.23
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 90.35
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 88.01
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=7.4e-56  Score=423.54  Aligned_cols=294  Identities=26%  Similarity=0.471  Sum_probs=246.0

Q ss_pred             cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEE-EEEEecccccceEEE-c--------cceeEE
Q 047296            2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLH-NVVFQGQCRNNDITI-H--------AGNWIL   71 (331)
Q Consensus         2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~-~l~l~~~~~~~~itl-g--------~~~~i~   71 (331)
                      |+|||+||||+|||++|||+|||+||+ ||+  +|++|+||+|+|++. +|.|++.+.- .+.+ |        .+.|+.
T Consensus        19 k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~~~~-~l~~~G~i~~~~~~~~~~~~   94 (422)
T d1rmga_          19 KTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGGSAT-AIQLDGIIYRTGTASGNMIA   94 (422)
T ss_dssp             CEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESCEEE-EEEECSEEEECCCCSSEEEE
T ss_pred             cEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCCCce-EEEEeEEEEeccCCccCEEE
Confidence            799999999999999999999999995 786  478999999999875 6888875321 2222 1        344555


Q ss_pred             Eee---eeeEEEEc-eeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEeceecEE
Q 047296           72 FEH---VNGVYIYG-GILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVK  147 (331)
Q Consensus        72 ~~~---~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~  147 (331)
                      +.+   ...+.+.| |+|||+|+.||...       ..+|+     +|.|.+|+|++|++++++|+|.|++.+..|++++
T Consensus        95 ~~~~~~~~~~~~~g~G~IdG~G~~~~~~~-------~~~p~-----~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~  162 (422)
T d1rmga_          95 VTDTTDFELFSSTSKGAVQGFGYVYHAEG-------TYGAR-----ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGE  162 (422)
T ss_dssp             EEEEEEEEEECSSSCCEEECCTHHHHTTT-------CCCCE-----EEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEE
T ss_pred             eccCccEEEEEeecceEEecCcceecCCC-------CCCCc-----EEEEEeeeeeEEECcEecCCCceEEEEeccccEE
Confidence            444   44455567 99999999999532       23688     9999999999999999999999999999999999


Q ss_pred             EEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe----------------ecceEecccCcccccccEEEEE
Q 047296          148 VQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVHEAGVQNVT  211 (331)
Q Consensus       148 i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~~~~v~nv~  211 (331)
                      |+|++|.++ +.+|+||||+.+ +||+|+||+|.++||||++                +||++|||++.   ...|+||+
T Consensus       163 i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~nV~  237 (422)
T d1rmga_         163 VYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIV  237 (422)
T ss_dssp             EEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEEEE
T ss_pred             EEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEEEE
Confidence            999999986 457999999975 5899999999999999998                78999999975   34799999


Q ss_pred             EEe------------eeCCCCCceEEEEEEEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEee---
Q 047296          212 VKY------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSV---  276 (331)
Q Consensus       212 i~n------------~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~---  276 (331)
                      |+|            ++. .+.|.|+||+||||+|+++++||.|+++|++....   ..+...|+||+|+||+++..   
T Consensus       238 v~n~~~~~s~~g~~ik~~-~g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~---~~~~v~isnIt~~Ni~GT~~~~~  313 (422)
T d1rmga_         238 YRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AGDGVQLNNITVKNWKGTEANGA  313 (422)
T ss_dssp             EEEEEEESSSCSEEEEEB-BCCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB---SSSCCEEEEEEEEEEEEEESCTT
T ss_pred             EEeEEEeCCCceEEEEEc-CCCceecceEEEEEEEecccccEEEecccCCCCCC---CCCCeEEEEEEEEeEEEEecCCc
Confidence            999            222 25689999999999999999999999999864322   24467899999999999874   


Q ss_pred             cceEEEEecCCCCceeeEEEEeEEEEeCC-CCCcceeecceeccc
Q 047296          277 TKVVVKIDCSQKYPCSGIKFEDVKLIYKN-QPAEASCRNADVSAS  320 (331)
Q Consensus       277 ~~~~~~i~~~~~~~~~ni~~~nv~i~~~~-~~~~~~C~~v~~~~~  320 (331)
                      .+.++.|.|++..||+||+|+||++++++ +.+.+.|+|+++...
T Consensus       314 ~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~~  358 (422)
T d1rmga_         314 TRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY  358 (422)
T ss_dssp             TSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEEST
T ss_pred             ccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeEE
Confidence            35689999999999999999999999877 566789999998764
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure